lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 33333333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222 222222 44444444444444444444444444444444444444444444444444444444444444444444444444444 111111 22 2222
lowQualScore : 6 444 88 00000000000 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 2 3 99 2 3333 5 1 888888 0 8 99999999999999999999999999999999999999999999999999999999999999999999999999999 000000 3 77 3 55 3 4444
lowQualScore : . ... .. ........... ............................................................................................................................................................................................................................................................. . . . . .. . .... . . ...... . . ............................................................................. ...... . .. . .. . ....
lowQualScore : 0 444 88 00000000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 2 9 1 00 7 3333 3 4 000000 4 8 33333333333333333333333333333333333333333333333333333333333333333333333333333 555555 6 33 6 00 6 7777
consensus : GTTTTCAAATATTTCTGTACAAAATGTGAAA---TA-----AATATACGGG-------AA------TCG------CAACATNACAAACTGAAT------AAAGTCA----N-------ACTG-GT-AAATTGT-CGTGTTT-TCG--GGGTATTTGTTTG---------CC--CGTATAGAGACACTCTGTAATCGC--TTG--NA----C-TCTTC---ACA-CATT-G---A----------------TTAAAA-AA----TGCTCTA--GGTGCATCATGTT-GGT-AT-----GTAAATAAGTATCAA-TAA-ATAC-TCTACAGTNA-GGA-AACTTTCAAA---ACATGCCCAAATTTT---GT-C---------A--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA------CTCT-TCNAAAG-GAGGTA--GAA-AAAT-TGTTTGTAGCAAGTGTC
Reference ( gi|5 ) : GTTTTCAAACATTTCGGAACAAAATGTGAA----TA-----AATATAC----------AA------TAA------CAACATTACCAACTGAAT------GAAGTCA----A-------ACTG-ATCAAATTGTAAGTGTTT-TTG--GGGTATTTGTTTG---------CC--CATATAAAGGCACTCTGTAATCAC--TTG--TA----C-T-------ACA-CATT-G---T----------------TTAAAA-AA----TGCTCTG--AGTGCATCATGTT-GGT-ATTAA-AGTAAATAAGTATTAA-TAG-ATAC-TCTACAGTTA-CGA-AACTTTCAAA---ACTTGCCCCAATTTT---AT-C---------A--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA------CTCT-TATAAAG-GAGGTA--GAA-AAATGTGTTTGTAGCAAGTGTC
gi|14 : GTTTTCATATATTTCTGTACAAAATGTGAA----TA-----AATATAC----------AAAACATGTAAAAATACCAACATAACAAACTGAAT------GAAGTCA----T-------TTGG-GTCAAATT-T-AGTGTT
gi|20 : cgaacaaatcaacttctctGCTTTAAAATATTTCTGCACAAAATATTAA----TA-----AATAT
gi|3 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTTCAAATATTTCTGTACAAAAT----A----TA-----AATATAG----------AA------ACA------AAACATG--CAAC--AAT------AGCACCACTATA-------ACTGGAT---ATT-----TGTTT-TCT--GGGC-----TTT----------CCAGTATATAGAGACACTTTGTAATTTT--TTGATCG----C-TTTTC---ACA-CATT-G---A----------------TTAAATTCA----TGTTTTA--GGTTCACCATAT--GAT-ATCGATGGTAAGTGAGTATCAA-TAA-ATAT-TATACAGT-A-AGACAACTCTCAAA----CATGCCCAGATTTG---GT-C---------A--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA------CTCTCCAAAAAG-GAGGT----AA-AAAT-TGTTTGTAGCA
gi|6 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATTTTTCTATACAAAATGTGAAACAGTATGCAGAATGTATGAA-------AA------TAG------CAACATTACAAACTGAA---------AGTCA----GGACGTTTACTG-G-------GTATTTGTTT-TCA--GAGAATCT--TTG---------------TATAGAGACACTCTGTAATCGC--TTG--AA----C-TCTTTTC-ACA-CATT-G---A----------------T-AAAA-AT----TACTCTA--GGTGCACGATATT-GAT-AT---------ATAAGAATCAG-TAG-AAAC-TCTATATTCA-GGA-AACTTTC-AA---ACATGCCGAAAATTT---GTCC---------A--------AA----------AAA---G-------TAAAAAT-------------------TTGAA------TCCT-T-----------------C-AAATTTGTTTGTAGCAAGTG
gi|4 : TTTCAAATATCTCTGCACAGGATG-GAAAA--TA-----AAGGTGCGGGTCGCAAAAA------TTG------TAACATTACAAACTGAATTTGGCTAAAGTCG----C-------GTTG-ATAAAATCATTCGCGTTTACTG--GG---TTCGCTCT---------CC--CG----------CTC---AACCTC--TT---T-----C-T-------CCGTCATT-G---A----------------TTAAAC-AT----TGCTGTAGAAGTGCTTCATGTT-G-----T-----TGAATAAGTATCAA-TAA-ATAT-TCTGAAG------A-AAGTTTCAAAC--ATTT--TAAAATTTT---GT-C---------A--------AA----------AA-TT-G---------AAAAT-------------------TGGAA------TTCT-TCTAAAG-GAGGTA--AGA-AAATTTGTGTGTAGC
gi|21 : ttagagatgcttgcaacaaaccacaaggaccactcagaT-TTGCCGGGTATTTATCT-----------T--CATAGGAA--CACTCGGTAATCGC--TGG--AA----C-TTTTAAA-ACA-CATT-G---A----------------TTAAAA-A
gi|17 : TG--GGATATTTGTTTGGAGAGCTTTTC--CATACAGAGACACTCTATAATCAC--TGG--TA----C-TCTTCTC-ATA-CATC-G---A----------------TTAATA-AA----TGGTCTT--GGTTCA
gi|11 : G--GGATATTTGTTTGGAGAGCTTTTC--CATATAAAGGCACTCTGTAATCAC--TGG--TA----C-T-------CCT-C-TC-A---T-----------------------------TGGTCTT--GGTTCATCGTGTC---------C-AG-AAATAAGTATCAA-TAA-ATAC-TATACCGTAA-GGA-AACTTTCAAA---
gi|8 : TGCTTT---------CT--CGTATAGAGGCACACTTTAATCGC--GTG--AA----C-TTCTTTCCCCA-CATT-G---A----------------TAAAAA-AAAT--TGCTCTA--GGAGCATCATTGT-G----------GTAAATCTGTATTAA--AA-ATTC-TCTAGAGTGA-AGA-AACTTACAAA---CATGGCCAC-ATTTT---GT-----------A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA------CTTG-TCAAAAG-GAGGTA--AAACAAAT---TTTGTAGCAAGcatagc
gi|12 : gggttttgttgtcaaTATAGAGAAACTCGGTAATCGC--TTG--AA----C-TCTCCTC-ACA-TATT-GATTT----------------TTAAAA-AA----TACTCAG--A-TACATCATGTT-GGT-A--AA-ATTATTTAAATATTAGCTGGTATGCATTTATAGTT--CAA-AA
gi|13 : gcttttgagTATAGAGATAATCTGTAATCAC--TTAATTAAACTC-TTTTC---AAA-CGTT-G---A----------------TTAAAA-AT----TGTACTA----------------GGT-AT-----GTAAAC---TATCAA-TAA-ACAT-TCTATTTTAA-GGA-AACTTTC-AA---GCATGTCCCAATTT
gi|15 : gCTCTGTAATCACGTTTA--CA----T-T-------AGA-CACT-G---TCTTTTCAAACGTTGATTTAAAA-AA----T----------TGTATCA-----GGT-AT---------GTAACTATCAA-TAA-ACAT-TCTATTTTAA-GGA-AACTTTCAA
gi|10 : CTGTAATCA----------------T-------ACA-CATTTG---A----------------TTAAAA-AAACATTGCT--------GCATTATGTTCGGCCATTAA--GTCA--------TAA-TAA-ATAC--CTACAATGAACAC-AGCTTTTACA------TGCTCGAATCTTTGCAT-A---------A--------AACGGAA-----AAATGAG-------TTAAAAC-------------------TGGAA------CTCT-T-CAGAG-AAGGTA--GAT-AGAAG-ATTTA-AGCAAGTGTgcattcca
gi|9 : C--CTG--TA----TAT-------ACA-CATT-G---A----------------TTAAAA-AAAT--TGCT--------GCATTATGTT-GGC-C---------AATAAGTATAAA-TA--ATAC-CCTACAATAA-GAA-AAGTTTTAAA----CATGCTCGAATTTT---GT-C---------ATAAAACGGAA----------AAAT--G-------TTAAAAT-------------------TGGAA------CTCT-TCAGAAG-AAGGTA--GAA-AAG-----TTGTAGCAAGTGTtttaactaaga
gi|16 : tcatgcattagttttcatatctttTAAGTATCAA-TAA-ATAC------AGTAA-GAA-AACTTC--AA---ACATGCTGAAATTTT---GT-G---------A--------AA----------AAAAT-A-------TA--------------------------GAA------CTCT-T-TAAAACGAGACA--GAA-GTATGTGGCTGCAGCAAGTG
gi|1 : AA-AAA-ATAC-TCTACAGTTA-GGG-GA--TTCCAA---ACATTCCCAAATTTT---GT-C---------C--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA------TTCT-TCAAAAG-GAGGCG--CAG-AAGTTAGTTTGTAGTAAGCGTC
gi|2 : gtataaAA-AAA-ATAC-TCTAC--TTA-GGA----TTTCAAA---CATT--CCCAAATTT---ATACAAAACTAAAA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA------CTCT-TCCAAA---AAGTAGCGAC-AAAAG---TTGTAGTAAGAGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|19 : ag-ATAA-TTTACAGT-A-TGGGAACTCCCAAACTGGCTGGCCCAAATTTT---GT-C---------A--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA------CTCT-TCTAAAG-GAGGTA--GAA-ataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|18 : cC-TGTACAGCAA-GGA-AACTTTCACA----CATGCATAAATTTT---GT-C---------A--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTT-CA-AAAG-GAGGTA--GAA-GA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA
Alignments
lowQualScore : 22222222 666666666666666666666 22222222 888888888888888888888888888 444444444444 222222222222222222222222222222222 1111 44444444444444 1111111 111111111 22222222 1111111111 111111111111 2222222222222222222 11 11111
lowQualScore : 0 1 44 7 44444444 888888888888888888888 99 11 0 0 55555555 111111111111111111111111111 1 3 5 1 777777777777 55 1 444444444444444444444444444444444 3 555 3 3 6666 999999 1 55555555555555 33 3 0 11 1 2 5555555 3 222222222 3 44444444 4444444444 222222222222 5555555555555555555 44 555 00 3 7777 3 99999
lowQualScore : . . .. . ........ ..................... .. .. . . ........ ........................... . . . . ............ .. . ................................. . ... . . .... ...... . .............. .. . . .. . . ....... . ......... . ........ .......... ............ ................... .. ... .. . .... . .....
lowQualScore : 3 0 22 3 22222222 222222222222222222222 66 88 8 8 66666666 222222222222222222222222222 0 0 0 4 222222222222 55 8 999999999999999999999999999999999 1 444 1 1 2222 777777 8 11111111111111 77 3 2 44 0 7 6666666 1 333333333 3 22222222 6666666666 999999999999 8888888888888888888 66 888 88 3 1111 3 22222
consensus : GTTTTCAAATATTTCTGTACAAAATGTGAAATA--------AATATACGAG-------A---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-A-----ACTGG-TCAAATT---TA-GTGTTTTCNGGGTATTTGTTTG---------CCCGTATA--GAGACACTCTGTAATCGC-------TTGA----AC------TC--T--T--CACACATT-GA---TT-AAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC-AAAAGGAGGT-AG----AA-AAAT-T-GTTTGTAGCAAGTGTC
Reference ( family-4043 ) : GTTTTCAAATATTTCTGTACAAAATGTGAAATA--------AATATACGGG-------A---------ATCGCAACATNACAAACTGAAT------AAAGTCAN-------ACTGG-T-AAATTG--TC-GTGTTTTCGGGGTATTTGTTTG---------CCCGTATA--GAGACACTCTGTAATCGC-------TTGN----AC------TC--T--T--CACACATT-GA---TT-AAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTNAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC-NAAAGGAGGT-AG----AA-AAAT-T-GTTTGTAGCAAGTGTC
gi|1 : AAAAAATACTCTACAGTTAGGG-GA--TTCCAA---ACATTCCCAAAT-TT---------TGT-CC--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA--TT---CTTC-AAAAGGAGGC-GC----AG-AAGT-TAGTTTGTAGTAAGCGTC
gi|10 : gtataaACACATTTGA---TT-AAAA-AAACATTGCT--------GCATTATGT-TCG--------GCCATTAAGTCAT-AATAAATAC-CTACAATGAACACAGCTTTTA------CATGCTCGAATCTT---------TG--CATAAAACGGAA----------AAATGAG-------TTAAAAC-------------------TGGAA--CT---CTTC--AGAGAAGGT-AG----AT-AGAA-G-ATTTA-AGCAAGTGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|11 : ctgtaatcatGGGATATTTGTTTGGAGAGCTTTTCCATATA--AAGGCACTCTGTAATCAC-------TGGT----AC------TC--C--T----CTCATT-GG--------------------TCTTG--GTTCATCGTGTCCAG----------AAATAAGT-ATCAATAAATACTATACCGTAAGGA-AACTTTC-AA---ACATtttaactaaga
gi|12 : GTATA--GAGAAACTCGGTAATCGC-------TTGA----AC------TC--TCCT--CACATATT-GATTTTT-AAAA-AA----TACTC-AG--ATACATCATGT-TGGTA--------AAAT---T-ATT--TAAATATTagc
gi|13 : gcttttgaGTATA--GAGATAATCTGTAATCAC-------TTAATTAAAC------TC--T--TTTCAAACGTT-GA---TT-AAAA-AT----TGTACTAG--GT--------------AT-----GTAAAC---T-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATGTCCCAAT-TT---------agctggtatgcatttatagttcaaaa
gi|14 : GTTTTCATATATTTCTGTACAAAATGTGAA-TA--------AATATACAAA-------ACATGTAAAAATACCAACATAACAAACTGAAT------GAAGTCAT-------TTGGG-TCAAATT---TA-GTGTT
gi|15 : cgaacaaatcaacttctctCTCTGTAATCACGTTTACATTAG----ACACTGTCTT--T--T--CAAACGTT-GA---TTTAAAA-AA----T----------TGTATCA-----GGTAT-----GTAACTA-----TCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATTCC
gi|16 : TAAGT-ATCAATAAATAC-----AGTAAGAA-AACTTC--AA---ACATGCTGAAAT-TT---------TGT-GA--------AA----------AAAAT-A-------TA--------------------------GAA--CT---CTTT-AAAACGAGAC-AG----AA-GTATGT-GGCTGCAGCAAGTGa
gi|17 : GGGATATTTGTTTGGAGAGCTTTTCCATACA--GAGACACTCTATAATCAC-------TGGT----AC------TC--TTCT--CATACATC-GA---TT-AATA-AA----TGGTCTTG--GTTCA
gi|18 : tCTGTACAGCAAGGA-AACTTTCACA----CATGCATAAAT-TT---------TGT-CA--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTTC-AAAAGGAGGT-AG----AA-GA
gi|19 : ATAATTTACAGTATGGG-AACTCCCAAACTGGCTGGCCCAAAT-TT---------TGT-CA--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA--CT---CTTC-TAAAGGAGGT-AG----AA-ttct
gi|2 : cAAAAAATACTCTAC--TTAGGA----TTTCAAA----CATTCCCAAAT-TTATACAAAACTAA-AA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA--CT---CTTC-CAAA--AAGT-AGCGACAA-AAG------TTGTAGTAAGAGT
gi|20 : agGCTTTAAAATATTTCTGCACAAAATATT-AATA--------AATATataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|21 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTGCCGGGTATTTATCTT---------C----ATA--GGAACACTCGGTAATCGC-------TGGA----AC------TT--T--TAAAACACATT-GA---TT-AAAA-A
gi|3 : TTTTCAAATATTTCTGTACAAAAT-----ATA--------AATATA---G-------A---------AACAAAACATG-CAA-C--AAT------AGCACCACTATA---ACTGG---ATATT-------TGTTTTCTGGGC-----TTT----------CCAGTATATAGAGACACTTTGTAATTTT-------TTGATC--GC------TT--T--T--CACACATT-GA---TT-AAATTCA----TGTTTTAG--GTTCACCATAT--GATATCGATGGTAAGTGAGT-ATCAATAAATATTATACAGTAAGAC-AACTCTC-AA---ACATGCCCAGAT-TT---------GGT-CA--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA--CT---CTCCAAAAAGGAGGT-------AA-AAAT-T-GTTTGTAGCA
gi|4 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATATCTCTGCACAGGATGGAAAATA--------AAGGTGCGGGTCGCAAAA---------ATTGTAACATTACAAACTGAATTTGGCTAAAGTCGC-------GTTGA-T-AAAATCATTC-GCGTTTACTGGGT--TCGCTCT---------CCCG------------CTC---AACCTC-------TT--------------TC--T--C--CGT-CATT-GA---TT-AAAC-AT----TGCTGTAGAAGTGCTTCATGT-TG---T------TGAATAAGT-ATCAATAAATATTCT-----GAAGA-AAGTTTCAAA----CATTTTAAAAT-TT---------TGT-CA--------AA----------AA-TT-G---------AAAAT-------------------TGGAA--TT---CTTC-TAAAGGAGGTAAG----AA-AATT-T-GTGTGTAGC
gi|5 : ttagagatgcttgcaacaaaccacaaggaccactcagaGTTTTCAAACATTTCGGAACAAAATGTGAA-TA--------AATATAC----------A---------ATAACAACATTACCAACTGAAT------GAAGTCAA-------ACTGA-TCAAATTG--TAAGTGTTTTTGGGGTATTTGTTTG---------CCCATATA--AAGGCACTCTGTAATCAC-------TTGT----AC------T----------ACACATT-GT---TT-AAAA-AA----TGCTCTGA--GTGCATCATGT-TGGTATTAAA-GTAAATAAGT-ATTAATAGATACTCTACAGTTACGA-AACTTTCAAA---ACTTGCCCCAAT-TT---------TAT-CA--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA--CT---CTTA-TAAAGGAGGT-AG----AA-AAATGT-GTTTGTAGCAAGTGTC
gi|6 : TTTCAAATTTTTCTATACAAAATGTGAAACAGTATGCAGAATGTATGAA-------A---------ATAGCAACATTACAAACTGAA---------AGTCAGGACGTTTACTGGGT-A--TT-------TGTTTTCAGAGAATCT--TTG-------------TATA--GAGACACTCTGTAATCGC-------TTGA----AC------TCTTT--T--CACACATT-GA----T-AAAA-AT----TACTCTAG--GTGCACGATAT-TGATAT---------ATAAGA-ATCAGTAGAAACTCTATATTCAGGA-AACTTTC-AA---ACATGCCGAAAA-TT---------TGTCCA--------AA----------AAA---G-------TAAAAAT-------------------TTGAA--TC---CTTC-------------------A-AATT-T-GTTTGTAGCAAGTG
gi|8 : TGCTTT---------CTCGTATA--GAGGCACACTTTAATCGC-------GTGA----ACT-----TC--T--TTCCCCACATT-GA---TA-AAAA-AAAT--TGCTCTAG--GAGCATCATTG-TG---------GTAAATCTGT-ATTAA-AAATTCTCTAGAGTGAAGA-AACTTAC-AA---ACATGGCCACAT-TT---------TGT--A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA--CT---TGTC-AAAAGGAGGT-AA----AACAAAT----TTTGTAGCAAG
gi|9 : gggttttgttgtcaaACACATT-GA---TT-AAAA-AAAT--TGCT--------GCATTATGT-TGGCC---------AATAAGT-ATAAATAA-TACCCTACAATAAGAA-AAGTTTTAAA----CATGCTCGAAT-TT---------TGT-CATAAAACGGAA----------AAAT--G-------TTAAAAT-------------------TGGAA--CT---CTTC-AGAAGAAGGT-AG----AA-AAG------TTGTAGCAAGTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA
Alignments
lowQualScore : 222222222222222222222 66666666666666666666 9999999999999999999999999999999999999 666666666666666666666 2222222222222222222222222222222222 1111 555555555555555 1111111 111111111 22222222 1111111111 111111111111 2222222222222222222 11111
lowQualScore : 0 777777777777777777777 6 00000000000000000000 0 9999999999999999999999999999999999999 6 1 5 333333333333333333333 55 1 4444444444444444444444444444444444 3 888 3 6666 999999 1 000000000000000 2 3 0 11 1 2 5555555 3 222222222 3 44444444 4444444444 222222222222 5555555555555555555 44 555 999 33 3 99999
lowQualScore : . ..................... . .................... . ..................................... . . . ..................... .. . .................................. . ... . .... ...... . ............... . . . .. . . ....... . ......... . ........ .......... ............ ................... .. ... ... .. . .....
lowQualScore : 3 222222222222222222222 7 66666666666666666666 8 0000000000000000000000000000000000000 2 0 0 000000000000000000000 55 8 3333333333333333333333333333333333 1 555 1 2222 777777 8 666666666666666 4 3 2 44 4 7 6666666 1 333333333 3 22222222 6666666666 999999999999 8888888888888888888 66 888 555 88 3 00000
consensus : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACGAA-------A---------ATAGCAACATTACAAACTGAAT------GAAGTCA-GACT-GATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTTT---------C---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
Reference ( family-4043 ) : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACGAG-------A---------ATAGCAACATTACAAACTGAAT------GAAGTCANAACT-GGTCAAAT--T-TA-GTGTTTTCNGGGTATTTGTTTG---------C---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
gi|1 : AAAAAATACTCTACAGTTAGGG-GA--TTCCAA---ACATTCCCAAAT-TT---------TGT-CC--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA--TT---CTTC--AAAAGGAGGC-GCAG-AAGT-TAGTTTGTAGTAAGCGTC
gi|10 : gtataaACACATTTGA---TTAAAA-AAACATTGCT--------GCATTATGT-TCG--------GCCATTAAGTCAT-AATAAATAC-CTACAATGAACACAGCTTTTA------CATGCTCGAATCTT---------TG--CATAAAACGGAA----------AAATGAG-------TTAAAAC-------------------TGGAA--CT---CTTC---AGAGAAGGT-AGAT-AGAA-G-ATTTA-AGCAAGTGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|11 : ctgtaatcatGGATATTTGTTTGGAGAGCTTTT---------CCATATA--AAGGCACTCTGTAATCAC-------TGGT----A------C-TC--C--T----CTCATT-GG-------------------TCTTG--GTTCATCGTGTCCAG----------AAATAAGT-ATCAATAAATACTATACCGTAAGGA-AACTTTC-AA---ACATtttaactaaga
gi|12 : gGTATA--GAGAAACTCGGTAATCGC-------TTGA----A------C-TC--TCCT--CACATATT-GATTTTTAAAA-AA----TACTC-AG--ATACATCATGT-TGGTA--------AAAT---T-ATT--TAAATATTagc
gi|13 : gcttttgaGTATA--GAGATAATCTGTAATCAC-------TTAATTAAA------C-TC--T--TTTCAAACGTT-GA---TTAAAA-AT----TGTACTAG--GT--------------AT-----GTAAAC---T-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATGTCCCAAT-TT---------agctggtatgcatttatagttcaaaa
gi|14 : GTTTTCATATATTTCTGTACAAAATGT-------GAA-TA--------AA-TATACAAA-------ACATGTAAAAATACCAACATAACAAACTGAAT------GAAGTCAT--TTGGGTCAAAT--T-TA-GTGTT
gi|15 : cgaacaaatcaacttctctCTCTGTAATCACGTTTACATTAG----ACACTGTC-TT--T--T--CAAACGTT-GAT--TTAAAA-AA----T----------TGTATCA-----GGTAT-----G----TAACT-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATTCC
gi|16 : TAAGT-ATCAATAAATAC-----AGTAAGAA-AACTTC--AA---ACATGCTGAAAT-TT---------TGT-GA--------AA----------AAAAT-A-------TA--------------------------GAA--CT---CTTT--AAAACGAGAC-AGAA-GTATGT-GGCTGCAGCAAGTGa
gi|17 : GGATATTTGTTTGGAGAGCTTTT---------CCATACA--GAGACACTCTATAATCAC-------TGGT----A------C-TC--TTCT--CATACATC-GA---TTAATA-AA----TGGTCTTG--GTTCA
gi|18 : tgCTGTACAGCAAGGA-AACTTTCACA----CATGCATAAAT-TT---------TGT-CA--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTTC--AAAAGGAGGT-AGAA-GA
gi|19 : ATAATTTACAGTATGGG-AACTCCCAAACTGGCTGGCCCAAAT-TT---------TGT-CA--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA--CT---CTTC--TAAAGGAGGT-AGAA-ttct
gi|2 : cAAAAAATACTCTAC--TTAGGA----TTTCAAA----CATTCCCAAAT-TTATACAAAACTAA-AA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA--CT---CTTCCAAAAAGTAGCG-ACAA-AAG------TTGTAGTAAGAGT
gi|20 : agGCTTTAAAATATTTCTGCACAAAATAT-------T-AATA--------AA-TATataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|21 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTGCCGGGTATTTATCTT---------C-------------ATA--GGAACACTCGGTAATCGC-------TGGA----A------C-TT--T--TAAAACACATT-GA---TTAAAA-A
gi|3 : TTTTCAAATATTTCTGTACAAAATATAAATATAGAAACA--------AAACATGCAAC-------A---------ATAGCACCACTATAA-CTGGAT-------------------------AT--T-T----GTTTTCTGGGC-----TTT----------C---------CAGTATATAGAGACACTTTGTAATTTT-------TTGATC--G------C-TT--T--T--CACACATT-GA---TTAAATTCA----TGTTTTAG--GTTCACCATAT--GATATCGATGGTAAGTGAGT-ATCAATAAATATTATACAGTAAGAC-AACTCTC-AA---ACATGCCCAGAT-TT---------GGT-CA--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA--CT---CTCCA-AAAAGGAGGT---AA-AAAT-T-GTTTGTAGCA
gi|4 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATATCTCTGCACAGGATGG-------AAAATA--------AA-GGTGCGGGTCGCAAAA---------ATTGTAACATTACAAACTGAATTTGGCTAAAGTCGCG-TT-GATAAAATCAT-TC-GCGTTTACTGGGT--TCGCTCT---------C---------CCG------------CTC---AACCTC-------TT---------------TC--T--C--CGT-CATT-GA---TTAAAC-AT----TGCTGTAGAAGTGCTTCATGT-TG---T------TGAATAAGT-ATCAATAAATATTCTG-----AAGA-AAGTTTCAAA----CATTTTAAAAT-TT---------TGT-CA--------AA----------AA-TT-G---------AAAAT-------------------TGGAA--TT---CTTC--TAAAGGAGGTAAGAA-AATT-T-GTGTGTAGC
gi|5 : ttagagatgcttgcaacaaaccacaaggaccactcagaGTTTTCAAACATTTCGGAACAAAATGT-------GAA-TA--------AA-TATAC----------A---------ATAACAACATTACCAACTGAAT------GAAGTCA-AACT-GATCAAAT--TGTAAGTGTTTTTGGGGTATTTGTTTG---------C---------CCATATA--AAGGCACTCTGTAATCAC-------TTGT----A------C-T----------ACACATT-GT---TTAAAA-AA----TGCTCTGA--GTGCATCATGT-TGGTATTAAA-GTAAATAAGT-ATTAATAGATACTCTACAGTTACGA-AACTTTCAAA---ACTTGCCCCAAT-TT---------TAT-CA--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA--CT---CTTA--TAAAGGAGGT-AGAA-AAATGT-GTTTGTAGCAAGTGTC
gi|6 : TTTCAAATTTTTCTATACAAAATGT-------GAAACAGTATGCAGAA-TGTATGAA-------A---------ATAGCAACATTACAAACTGAA---------AGTCAGGAC-------------------GTTTACTGGGTATTTGTTTT---------CAGAGAATCTTTGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TCTTT--T--CACACATT-GA----TAAAA-AT----TACTCTAG--GTGCACGATAT-TGATAT---------ATAAGA-ATCAGTAGAAACTCTATATTCAGGA-AACTTTC-AA---ACATGCCGAAAA-TT---------TGTCCA--------AA----------AAA---G-------TAAAAAT-------------------TTGAA--TC---CTTC--AAA------T---------T-T-GTTTGTAGCAAGTG
gi|8 : TGCTTT---------C---------TCGTATA--GAGGCACACTTTAATCGC-------GTGA----A------CTTC--T--TTCCCCACATT-GA---TAAAAA-AAAT--TGCTCTAG--GAGCATCATTG-TG---------GTAAATCTGT-ATTAA-AAATTCTCTAGAGTGAAGA-AACTTAC-AA---ACATGGCCACAT-TT---------TGT--A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA--CT---TGTC--AAAAGGAGGT-AAAACAAAT----TTTGTAGCAAG
gi|9 : gggttttgttgtcaaACACATT-GA---TTAAAA-AAAT--TGCT--------GCATTATGT-TGGCC---------AATAAGT-ATAAATAA-TACCCTACAATAAGAA-AAGTTTTAAA----CATGCTCGAAT-TT---------TGT-CATAAAACGGAA----------AAAT--G-------TTAAAAT-------------------TGGAA--CT---CTTC--AGAAGAAGGT-AGAA-AAG------TTGTAGCAAGTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA
Alignments
lowQualScore : 222222222222222222222 55555555555555555555 77777777777777777777777777777777777 444444444444444444444 2222222222222222222222222222222222 1111 555555555555555 1111111 111111111 22222222 1111111111 111111111111 2222222222222222222 11111
lowQualScore : 0 777777777777777777777 6 11111111111111111111 0 44444444444444444444444444444444444 1 5 888888888888888888888 55 1 4444444444444444444444444444444444 3 888 3 6666 999999 1 000000000000000 2 3 0 11 1 2 5555555 3 222222222 3 44444444 4444444444 222222222222 5555555555555555555 44 555 999 33 3 99999
lowQualScore : . ..................... . .................... . ................................... . . ..................... .. . .................................. . ... . .... ...... . ............... . . . .. . . ....... . ......... . ........ .......... ............ ................... .. ... ... .. . .....
lowQualScore : 3 222222222222222222222 7 88888888888888888888 8 44444444444444444444444444444444444 0 0 222222222222222222222 55 8 3333333333333333333333333333333333 1 555 1 2222 777777 8 666666666666666 4 3 2 44 4 7 6666666 1 333333333 3 22222222 6666666666 999999999999 8888888888888888888 66 888 555 88 3 00000
consensus : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-TTGATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
Reference ( family-4043 ) : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAGACTGATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
gi|1 : AAAAAATACTCTACAGTTAGGG-GA--TTCCAA---ACATTCCCAAAT-TT---------TGT-CC--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA--TT---CTTC--AAAAGGAGGC-GCAG-AAGT-TAGTTTGTAGTAAGCGTC
gi|10 : gtataaACACATTTGA---TTAAAA-AAACATTGCT--------GCATTATGT-TCG--------GCCATTAAGTCAT-AATAAATAC-CTACAATGAACACAGCTTTTA------CATGCTCGAATCTT---------TG--CATAAAACGGAA----------AAATGAG-------TTAAAAC-------------------TGGAA--CT---CTTC---AGAGAAGGT-AGAT-AGAA-G-ATTTA-AGCAAGTGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|11 : ctgtaatcatGGATATTTGTTTGGAGAGCTTTT---------CCATATA--AAGGCACTCTGTAATCAC-------TGGT----A------C-TC--C--T----CTCATT-GG-------------------TCTTG--GTTCATCGTGTCCAG----------AAATAAGT-ATCAATAAATACTATACCGTAAGGA-AACTTTC-AA---ACATtttaactaaga
gi|12 : gGTATA--GAGAAACTCGGTAATCGC-------TTGA----A------C-TC--TCCT--CACATATT-GATTTTTAAAA-AA----TACTC-AG--ATACATCATGT-TGGTA--------AAAT---T-ATT--TAAATATTagc
gi|13 : gcttttgaGTATA--GAGATAATCTGTAATCAC-------TTAATTAAA------C-TC--T--TTTCAAACGTT-GA---TTAAAA-AT----TGTACTAG--GT--------------AT-----GTAAAC---T-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATGTCCCAAT-TT---------agctggtatgcatttatagttcaaaa
gi|14 : GTTTTCATATATTTCTGTACAAAATGT-------GAA-TA--------AA-TATACA-------AAACATGTAAAAATACCAACATAACAAACTGAAT------GAAGTCATTTGGGTCAAAT--T-TA-GTGTT
gi|15 : cgaacaaatcaacttctctCTCTGTAATCACGTTTACATTAG----ACACTGTC-TT--T--T--CAAACGTT-GAT--TTAAAA-AA----T----------TGTATCA-----GGTAT-----G----TAACT-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATTCC
gi|16 : TAAGT-ATCAATAAATAC-----AGTAAGAA-AACTTC--AA---ACATGCTGAAAT-TT---------TGT-GA--------AA----------AAAAT-A-------TA--------------------------GAA--CT---CTTT--AAAACGAGAC-AGAA-GTATGT-GGCTGCAGCAAGTGa
gi|17 : GGATATTTGTTTGGAGAGCTTTT---------CCATACA--GAGACACTCTATAATCAC-------TGGT----A------C-TC--TTCT--CATACATC-GA---TTAATA-AA----TGGTCTTG--GTTCA
gi|18 : tgCTGTACAGCAAGGA-AACTTTCACA----CATGCATAAAT-TT---------TGT-CA--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTTC--AAAAGGAGGT-AGAA-GA
gi|19 : ATAATTTACAGTATGGG-AACTCCCAAACTGGCTGGCCCAAAT-TT---------TGT-CA--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA--CT---CTTC--TAAAGGAGGT-AGAA-ttct
gi|2 : cAAAAAATACTCTAC--TTAGGA----TTTCAAA----CATTCCCAAAT-TTATACAAAACTAA-AA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA--CT---CTTCCAAAAAGTAGCG-ACAA-AAG------TTGTAGTAAGAGT
gi|20 : agGCTTTAAAATATTTCTGCACAAAATAT-------T-AATA--------AA-TATataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|21 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTGCCGGGTATTTATCT---------TC-------------ATA--GGAACACTCGGTAATCGC-------TGGA----A------C-TT--T--TAAAACACATT-GA---TTAAAA-A
gi|3 : TTTTCAAATATTTCTGTACAAAATATAAATATAGAAACA--------AAACATGCA-------ACA---------ATAGCACCACTATAA-CTGGAT-----------------------AT--T-T----GTTTTCTGGGC------TT---------TC---------CAGTATATAGAGACACTTTGTAATTTT-------TTGATC--G------C-TT--T--T--CACACATT-GA---TTAAATTCA----TGTTTTAG--GTTCACCATAT--GATATCGATGGTAAGTGAGT-ATCAATAAATATTATACAGTAAGAC-AACTCTC-AA---ACATGCCCAGAT-TT---------GGT-CA--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA--CT---CTCCA-AAAAGGAGGT---AA-AAAT-T-GTTTGTAGCA
gi|4 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATATCTCTGCACAGGATGG-------AAAATA--------AA-GGTGCGGGTCGCAAAA---------ATTGTAACATTACAAACTGAATTTGGCTAAAGTCGCGTTGATAAAATCAT-TC-GCGTTTACTGGGT--TCGCTC---------TC---------CCG------------CTC---AACCTC-------TT---------------TC--T--C--CGT-CATT-GA---TTAAAC-AT----TGCTGTAGAAGTGCTTCATGT-TG---T------TGAATAAGT-ATCAATAAATATTCTG-----AAGA-AAGTTTCAAA----CATTTTAAAAT-TT---------TGT-CA--------AA----------AA-TT-G---------AAAAT-------------------TGGAA--TT---CTTC--TAAAGGAGGTAAGAA-AATT-T-GTGTGTAGC
gi|5 : ttagagatgcttgcaacaaaccacaaggaccactcagaGTTTTCAAACATTTCGGAACAAAATGT-------GAA-TA--------AA-TATAC----------A---------ATAACAACATTACCAACTGAAT------GAAGTCAAACTGATCAAAT--TGTAAGTGTTTTTGGGGTATTTGTTT---------GC---------CCATATA--AAGGCACTCTGTAATCAC-------TTGT----A------C-T----------ACACATT-GT---TTAAAA-AA----TGCTCTGA--GTGCATCATGT-TGGTATTAAA-GTAAATAAGT-ATTAATAGATACTCTACAGTTACGA-AACTTTCAAA---ACTTGCCCCAAT-TT---------TAT-CA--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA--CT---CTTA--TAAAGGAGGT-AGAA-AAATGT-GTTTGTAGCAAGTGTC
gi|6 : TTTCAAATTTTTCTATACAAAATGT-------GAAACAGTATGCAGAA-TGTATG-------AAA---------ATAGCAACATTACAAACTGAA---------AGTCAG---GA--------------CGTTTACTGGGTATTTGTTT---------TCAGAGAATCTTTGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TCTTT--T--CACACATT-GA----TAAAA-AT----TACTCTAG--GTGCACGATAT-TGATAT---------ATAAGA-ATCAGTAGAAACTCTATATTCAGGA-AACTTTC-AA---ACATGCCGAAAA-TT---------TGTCCA--------AA----------AAA---G-------TAAAAAT-------------------TTGAA--TC---CTTC--AAA------T---------T-T-GTTTGTAGCAAGTG
gi|8 : TGCTT---------TC---------TCGTATA--GAGGCACACTTTAATCGC-------GTGA----A------CTTC--T--TTCCCCACATT-GA---TAAAAA-AAAT--TGCTCTAG--GAGCATCATTG-TG---------GTAAATCTGT-ATTAA-AAATTCTCTAGAGTGAAGA-AACTTAC-AA---ACATGGCCACAT-TT---------TGT--A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA--CT---TGTC--AAAAGGAGGT-AAAACAAAT----TTTGTAGCAAG
gi|9 : gggttttgttgtcaaACACATT-GA---TTAAAA-AAAT--TGCT--------GCATTATGT-TGGCC---------AATAAGT-ATAAATAA-TACCCTACAATAAGAA-AAGTTTTAAA----CATGCTCGAAT-TT---------TGT-CATAAAACGGAA----------AAAT--G-------TTAAAAT-------------------TGGAA--CT---CTTC--AGAAGAAGGT-AGAA-AAG------TTGTAGCAAGTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA
Alignments
lowQualScore : 222222222222222222222 55555555555555555555 777777777777777777777777777777777777 444444444444444444444 2222222222222222222222222222222222 1111 555555555555555 1111111 111111111 22222222 1111111111 111111111111 2222222222222222222 11111
lowQualScore : 0 777777777777777777777 6 11111111111111111111 0 777777777777777777777777777777777777 1 5 888888888888888888888 55 1 4444444444444444444444444444444444 3 888 3 6666 999999 1 000000000000000 2 3 0 11 1 2 5555555 3 222222222 3 44444444 4444444444 222222222222 5555555555555555555 44 555 999 33 3 99999
lowQualScore : . ..................... . .................... . .................................... . . ..................... .. . .................................. . ... . .... ...... . ............... . . . .. . . ....... . ......... . ........ .......... ............ ................... .. ... ... .. . .....
lowQualScore : 3 222222222222222222222 7 88888888888888888888 8 666666666666666666666666666666666666 0 0 222222222222222222222 55 8 3333333333333333333333333333333333 1 555 1 2222 777777 8 666666666666666 4 3 2 44 4 7 6666666 1 333333333 3 22222222 6666666666 999999999999 8888888888888888888 66 888 555 88 3 00000
consensus : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-TT-GATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
Reference ( family-4043 ) : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-TT-GATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
gi|1 : AAAAAATACTCTACAGTTAGGG-GA--TTCCAA---ACATTCCCAAAT-TT---------TGT-CC--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA--TT---CTTC--AAAAGGAGGC-GCAG-AAGT-TAGTTTGTAGTAAGCGTC
gi|10 : gtataaACACATTTGA---TTAAAA-AAACATTGCT--------GCATTATGT-TCG--------GCCATTAAGTCAT-AATAAATAC-CTACAATGAACACAGCTTTTA------CATGCTCGAATCTT---------TG--CATAAAACGGAA----------AAATGAG-------TTAAAAC-------------------TGGAA--CT---CTTC---AGAGAAGGT-AGAT-AGAA-G-ATTTA-AGCAAGTGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|11 : ctgtaatcatGGATATTTGTTTGGAGAGCTTTT---------CCATATA--AAGGCACTCTGTAATCAC-------TGGT----A------C-TC--C--T----CTCATT-GG-------------------TCTTG--GTTCATCGTGTCCAG----------AAATAAGT-ATCAATAAATACTATACCGTAAGGA-AACTTTC-AA---ACATtttaactaaga
gi|12 : gGTATA--GAGAAACTCGGTAATCGC-------TTGA----A------C-TC--TCCT--CACATATT-GATTTTTAAAA-AA----TACTC-AG--ATACATCATGT-TGGTA--------AAAT---T-ATT--TAAATATTagc
gi|13 : gcttttgaGTATA--GAGATAATCTGTAATCAC-------TTAATTAAA------C-TC--T--TTTCAAACGTT-GA---TTAAAA-AT----TGTACTAG--GT--------------AT-----GTAAAC---T-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATGTCCCAAT-TT---------agctggtatgcatttatagttcaaaa
gi|14 : GTTTTCATATATTTCTGTACAAAATGT-------GAA-TA--------AA-TATACA-------AAACATGTAAAAATACCAACATAACAAACTGAAT------GAAGTCAT-TTGGGTCAAAT--T-TA-GTGTT
gi|15 : cgaacaaatcaacttctctCTCTGTAATCACGTTTACATTAG----ACACTGTC-TT--T--T--CAAACGTT-GAT--TTAAAA-AA----T----------TGTATCA-----GGTAT-----G----TAACT-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATTCC
gi|16 : TAAGT-ATCAATAAATAC-----AGTAAGAA-AACTTC--AA---ACATGCTGAAAT-TT---------TGT-GA--------AA----------AAAAT-A-------TA--------------------------GAA--CT---CTTT--AAAACGAGAC-AGAA-GTATGT-GGCTGCAGCAAGTGa
gi|17 : GGATATTTGTTTGGAGAGCTTTT---------CCATACA--GAGACACTCTATAATCAC-------TGGT----A------C-TC--TTCT--CATACATC-GA---TTAATA-AA----TGGTCTTG--GTTCA
gi|18 : tgCTGTACAGCAAGGA-AACTTTCACA----CATGCATAAAT-TT---------TGT-CA--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTTC--AAAAGGAGGT-AGAA-GA
gi|19 : ATAATTTACAGTATGGG-AACTCCCAAACTGGCTGGCCCAAAT-TT---------TGT-CA--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA--CT---CTTC--TAAAGGAGGT-AGAA-ttct
gi|2 : cAAAAAATACTCTAC--TTAGGA----TTTCAAA----CATTCCCAAAT-TTATACAAAACTAA-AA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA--CT---CTTCCAAAAAGTAGCG-ACAA-AAG------TTGTAGTAAGAGT
gi|20 : agGCTTTAAAATATTTCTGCACAAAATAT-------T-AATA--------AA-TATataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|21 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTGCCGGGTATTTATCT---------TC-------------ATA--GGAACACTCGGTAATCGC-------TGGA----A------C-TT--T--TAAAACACATT-GA---TTAAAA-A
gi|3 : TTTTCAAATATTTCTGTACAAAATATAAATATAGAAACA--------AAACATGCA-------ACA---------ATAGCACCACTATAA-CTGGAT------------------------AT--T-T----GTTTTCTGGGC------TT---------TC---------CAGTATATAGAGACACTTTGTAATTTT-------TTGATC--G------C-TT--T--T--CACACATT-GA---TTAAATTCA----TGTTTTAG--GTTCACCATAT--GATATCGATGGTAAGTGAGT-ATCAATAAATATTATACAGTAAGAC-AACTCTC-AA---ACATGCCCAGAT-TT---------GGT-CA--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA--CT---CTCCA-AAAAGGAGGT---AA-AAAT-T-GTTTGTAGCA
gi|4 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATATCTCTGCACAGGATGG-------AAAATA--------AA-GGTGCGGGTCGCAAAA---------ATTGTAACATTACAAACTGAATTTGGCTAAAGTCGCGTT-GATAAAATCAT-TC-GCGTTTACTGGGT--TCGCTC---------TC---------CCG------------CTC---AACCTC-------TT---------------TC--T--C--CGT-CATT-GA---TTAAAC-AT----TGCTGTAGAAGTGCTTCATGT-TG---T------TGAATAAGT-ATCAATAAATATTCTG-----AAGA-AAGTTTCAAA----CATTTTAAAAT-TT---------TGT-CA--------AA----------AA-TT-G---------AAAAT-------------------TGGAA--TT---CTTC--TAAAGGAGGTAAGAA-AATT-T-GTGTGTAGC
gi|5 : ttagagatgcttgcaacaaaccacaaggaccactcagaGTTTTCAAACATTTCGGAACAAAATGT-------GAA-TA--------AA-TATAC----------A---------ATAACAACATTACCAACTGAAT------GAAGTCAAACT-GATCAAAT--TGTAAGTGTTTTTGGGGTATTTGTTT---------GC---------CCATATA--AAGGCACTCTGTAATCAC-------TTGT----A------C-T----------ACACATT-GT---TTAAAA-AA----TGCTCTGA--GTGCATCATGT-TGGTATTAAA-GTAAATAAGT-ATTAATAGATACTCTACAGTTACGA-AACTTTCAAA---ACTTGCCCCAAT-TT---------TAT-CA--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA--CT---CTTA--TAAAGGAGGT-AGAA-AAATGT-GTTTGTAGCAAGTGTC
gi|6 : TTTCAAATTTTTCTATACAAAATGT-------GAAACAGTATGCAGAA-TGTATG-------AAA---------ATAGCAACATTACAAACTGAA---------AGTCAG----GA--------------CGTTTACTGGGTATTTGTTT---------TCAGAGAATCTTTGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TCTTT--T--CACACATT-GA----TAAAA-AT----TACTCTAG--GTGCACGATAT-TGATAT---------ATAAGA-ATCAGTAGAAACTCTATATTCAGGA-AACTTTC-AA---ACATGCCGAAAA-TT---------TGTCCA--------AA----------AAA---G-------TAAAAAT-------------------TTGAA--TC---CTTC--AAA------T---------T-T-GTTTGTAGCAAGTG
gi|8 : TGCTT---------TC---------TCGTATA--GAGGCACACTTTAATCGC-------GTGA----A------CTTC--T--TTCCCCACATT-GA---TAAAAA-AAAT--TGCTCTAG--GAGCATCATTG-TG---------GTAAATCTGT-ATTAA-AAATTCTCTAGAGTGAAGA-AACTTAC-AA---ACATGGCCACAT-TT---------TGT--A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA--CT---TGTC--AAAAGGAGGT-AAAACAAAT----TTTGTAGCAAG
gi|9 : gggttttgttgtcaaACACATT-GA---TTAAAA-AAAT--TGCT--------GCATTATGT-TGGCC---------AATAAGT-ATAAATAA-TACCCTACAATAAGAA-AAGTTTTAAA----CATGCTCGAAT-TT---------TGT-CATAAAACGGAA----------AAAT--G-------TTAAAAT-------------------TGGAA--CT---CTTC--AGAAGAAGGT-AGAA-AAG------TTGTAGCAAGTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA
Alignments
lowQualScore : 222222222222222222222 55555555555555555555 777777777777777777777777777777777777 444444444444444444444 2222222222222222222222222222222222 1111 555555555555555 1111111 111111111 22222222 1111111111 111111111111 2222222222222222222 11111
lowQualScore : 0 777777777777777777777 6 11111111111111111111 0 777777777777777777777777777777777777 1 5 888888888888888888888 55 1 4444444444444444444444444444444444 3 888 3 6666 999999 1 000000000000000 2 3 0 11 1 2 5555555 3 222222222 3 44444444 4444444444 222222222222 5555555555555555555 44 555 999 33 3 99999
lowQualScore : . ..................... . .................... . .................................... . . ..................... .. . .................................. . ... . .... ...... . ............... . . . .. . . ....... . ......... . ........ .......... ............ ................... .. ... ... .. . .....
lowQualScore : 3 222222222222222222222 7 88888888888888888888 8 666666666666666666666666666666666666 0 0 222222222222222222222 55 8 3333333333333333333333333333333333 1 555 1 2222 777777 8 666666666666666 4 3 2 44 4 7 6666666 1 333333333 3 22222222 6666666666 999999999999 8888888888888888888 66 888 555 88 3 00000
consensus : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-TT-GATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
Reference ( family-4043 ) : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-TT-GATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
gi|1 : AAAAAATACTCTACAGTTAGGG-GA--TTCCAA---ACATTCCCAAAT-TT---------TGT-CC--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA--TT---CTTC--AAAAGGAGGC-GCAG-AAGT-TAGTTTGTAGTAAGCGTC
gi|10 : gtataaACACATTTGA---TTAAAA-AAACATTGCT--------GCATTATGT-TCG--------GCCATTAAGTCAT-AATAAATAC-CTACAATGAACACAGCTTTTA------CATGCTCGAATCTT---------TG--CATAAAACGGAA----------AAATGAG-------TTAAAAC-------------------TGGAA--CT---CTTC---AGAGAAGGT-AGAT-AGAA-G-ATTTA-AGCAAGTGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|11 : ctgtaatcatGGATATTTGTTTGGAGAGCTTTT---------CCATATA--AAGGCACTCTGTAATCAC-------TGGT----A------C-TC--C--T----CTCATT-GG-------------------TCTTG--GTTCATCGTGTCCAG----------AAATAAGT-ATCAATAAATACTATACCGTAAGGA-AACTTTC-AA---ACATtttaactaaga
gi|12 : gGTATA--GAGAAACTCGGTAATCGC-------TTGA----A------C-TC--TCCT--CACATATT-GATTTTTAAAA-AA----TACTC-AG--ATACATCATGT-TGGTA--------AAAT---T-ATT--TAAATATTagc
gi|13 : gcttttgaGTATA--GAGATAATCTGTAATCAC-------TTAATTAAA------C-TC--T--TTTCAAACGTT-GA---TTAAAA-AT----TGTACTAG--GT--------------AT-----GTAAAC---T-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATGTCCCAAT-TT---------agctggtatgcatttatagttcaaaa
gi|14 : GTTTTCATATATTTCTGTACAAAATGT-------GAA-TA--------AA-TATACA-------AAACATGTAAAAATACCAACATAACAAACTGAAT------GAAGTCAT-TTGGGTCAAAT--T-TA-GTGTT
gi|15 : cgaacaaatcaacttctctCTCTGTAATCACGTTTACATTAG----ACACTGTC-TT--T--T--CAAACGTT-GAT--TTAAAA-AA----T----------TGTATCA-----GGTAT-----G----TAACT-ATCAATAAACATTCTATTTTAAGGA-AACTTTC-AA---GCATTCC
gi|16 : TAAGT-ATCAATAAATAC-----AGTAAGAA-AACTTC--AA---ACATGCTGAAAT-TT---------TGT-GA--------AA----------AAAAT-A-------TA--------------------------GAA--CT---CTTT--AAAACGAGAC-AGAA-GTATGT-GGCTGCAGCAAGTGa
gi|17 : GGATATTTGTTTGGAGAGCTTTT---------CCATACA--GAGACACTCTATAATCAC-------TGGT----A------C-TC--TTCT--CATACATC-GA---TTAATA-AA----TGGTCTTG--GTTCA
gi|18 : tgCTGTACAGCAAGGA-AACTTTCACA----CATGCATAAAT-TT---------TGT-CA--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTTC--AAAAGGAGGT-AGAA-GA
gi|19 : ATAATTTACAGTATGGG-AACTCCCAAACTGGCTGGCCCAAAT-TT---------TGT-CA--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA--CT---CTTC--TAAAGGAGGT-AGAA-ttct
gi|2 : cAAAAAATACTCTAC--TTAGGA----TTTCAAA----CATTCCCAAAT-TTATACAAAACTAA-AA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA--CT---CTTCCAAAAAGTAGCG-ACAA-AAG------TTGTAGTAAGAGT
gi|20 : agGCTTTAAAATATTTCTGCACAAAATAT-------T-AATA--------AA-TATataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|21 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTGCCGGGTATTTATCT---------TC-------------ATA--GGAACACTCGGTAATCGC-------TGGA----A------C-TT--T--TAAAACACATT-GA---TTAAAA-A
gi|3 : TTTTCAAATATTTCTGTACAAAATATAAATATAGAAACA--------AAACATGCA-------ACA---------ATAGCACCACTATAA-CTGGAT------------------------AT--T-T----GTTTTCTGGGC------TT---------TC---------CAGTATATAGAGACACTTTGTAATTTT-------TTGATC--G------C-TT--T--T--CACACATT-GA---TTAAATTCA----TGTTTTAG--GTTCACCATAT--GATATCGATGGTAAGTGAGT-ATCAATAAATATTATACAGTAAGAC-AACTCTC-AA---ACATGCCCAGAT-TT---------GGT-CA--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA--CT---CTCCA-AAAAGGAGGT---AA-AAAT-T-GTTTGTAGCA
gi|4 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATATCTCTGCACAGGATGG-------AAAATA--------AA-GGTGCGGGTCGCAAAA---------ATTGTAACATTACAAACTGAATTTGGCTAAAGTCGCGTT-GATAAAATCAT-TC-GCGTTTACTGGGT--TCGCTC---------TC---------CCG------------CTC---AACCTC-------TT---------------TC--T--C--CGT-CATT-GA---TTAAAC-AT----TGCTGTAGAAGTGCTTCATGT-TG---T------TGAATAAGT-ATCAATAAATATTCTG-----AAGA-AAGTTTCAAA----CATTTTAAAAT-TT---------TGT-CA--------AA----------AA-TT-G---------AAAAT-------------------TGGAA--TT---CTTC--TAAAGGAGGTAAGAA-AATT-T-GTGTGTAGC
gi|5 : ttagagatgcttgcaacaaaccacaaggaccactcagaGTTTTCAAACATTTCGGAACAAAATGT-------GAA-TA--------AA-TATAC----------A---------ATAACAACATTACCAACTGAAT------GAAGTCAAACT-GATCAAAT--TGTAAGTGTTTTTGGGGTATTTGTTT---------GC---------CCATATA--AAGGCACTCTGTAATCAC-------TTGT----A------C-T----------ACACATT-GT---TTAAAA-AA----TGCTCTGA--GTGCATCATGT-TGGTATTAAA-GTAAATAAGT-ATTAATAGATACTCTACAGTTACGA-AACTTTCAAA---ACTTGCCCCAAT-TT---------TAT-CA--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA--CT---CTTA--TAAAGGAGGT-AGAA-AAATGT-GTTTGTAGCAAGTGTC
gi|6 : TTTCAAATTTTTCTATACAAAATGT-------GAAACAGTATGCAGAA-TGTATG-------AAA---------ATAGCAACATTACAAACTGAA---------AGTCAG----GA--------------CGTTTACTGGGTATTTGTTT---------TCAGAGAATCTTTGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TCTTT--T--CACACATT-GA----TAAAA-AT----TACTCTAG--GTGCACGATAT-TGATAT---------ATAAGA-ATCAGTAGAAACTCTATATTCAGGA-AACTTTC-AA---ACATGCCGAAAA-TT---------TGTCCA--------AA----------AAA---G-------TAAAAAT-------------------TTGAA--TC---CTTC--AAA------T---------T-T-GTTTGTAGCAAGTG
gi|8 : TGCTT---------TC---------TCGTATA--GAGGCACACTTTAATCGC-------GTGA----A------CTTC--T--TTCCCCACATT-GA---TAAAAA-AAAT--TGCTCTAG--GAGCATCATTG-TG---------GTAAATCTGT-ATTAA-AAATTCTCTAGAGTGAAGA-AACTTAC-AA---ACATGGCCACAT-TT---------TGT--A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA--CT---TGTC--AAAAGGAGGT-AAAACAAAT----TTTGTAGCAAG
gi|9 : gggttttgttgtcaaACACATT-GA---TTAAAA-AAAT--TGCT--------GCATTATGT-TGGCC---------AATAAGT-ATAAATAA-TACCCTACAATAAGAA-AAGTTTTAAA----CATGCTCGAAT-TT---------TGT-CATAAAACGGAA----------AAAT--G-------TTAAAAT-------------------TGGAA--CT---CTTC--AGAAGAAGGT-AGAA-AAG------TTGTAGCAAGTGT
blockSeqs : GAAACAGTATGCAG A GGGTCGCAAAA TTTGGCTAAAGTCGCGTTGATAAAATCATTCGC T A GGAGAGCTTTTC TA G GTTTACATTAGACACTGTCTTTT . TTT T AT GTAGAA T GATATCGATGGTA A . AA G C AAACTGG C ATACAAAAC C TAAAACGG CCGACGCTGT ATGAG TTAAAAAAAAAAAAAAAAA AC AGC CAA AA C ATGT
blockSeqs : AAATATAGAAACA . AACA TGAAGTCAAACTGATCAAATTGTAAGT A A TCAGAGAATCTT . A TTAATTAAACTCTTTT . T . AT CTTG A TGGTATTAAAGTA A . CG A . AAAA . . . TAAAACGG . AATA . . . AA A . ATGT
blockSeqs : AAAATA . GAAA AGTCAGGAC T A TCC . A GTGAACTTCTTTC . . . . CTAG G TGGTAA A . TT A . AAA . . . . . ATTG . . . A A . AAG
blockSeqs : TAATA . A TATTT A A TCC . A TTGAACTCTCCT . . . . CTTG T GGTATG G . TT A . AAG . . . . . ATTG . . . A A . ATT
blockSeqs : GAATA . . GCC . G TGGTACTCTTCT . . . . TTAG T TGATAT A . AG A . AAG . . . . . ATTG . . . T A . TTT
blockSeqs : . TCT . T TGGAACTTTTAA . . . . CTGA G CCAGA A . AG A . AAA . . . . . ACTG . . . T A . TT
blockSeqs : TC . T TTGATCGCTTTT . . . . CTAG G ATGTA A . AG A . ACA . . . . . ATG . . . T A . AT
blockSeqs : . A TTGAACTCTTTT . . . . CTAG G TGTTG C . AG T . AAA . . . . . CTG . . . A A . G
blockSeqs : . G TTGTACT . . . . CAG G TGGTA A . AG A . AAA . . . . . TTG . . . A A . G
blockSeqs : G TTTCTC . . . . . G TGGCC . . AT T . AAA . . . . . ATG . . . A . .
blockSeqs : . . . . . . . . AG C . AAA . . . . . AG . . . . . .
blockSeqs : . . . AA G . AAA . .
blockSeqs : . A . AAA
blockSeqs : . . . A
blockSeqCons : GAA***************** TAGTCGGAATCC************************ TCC****************** TTGAACTCTTTT********************** **** CTAG** TGGTA********** AAA**** ATTG******** ATT**
originalCons : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACG-------AAA---------ATAGCAACATTACAAACTGAAT------GAAGTCAN-TT-GATCAAAT--T-TA-GCGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----A------C-TC--T--T--CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT-TGGTAT-----GTAAATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA---ACATGCCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
finalCons : GTTTTCAAATATTTCTGTACAAAATGT-------GAAATA--------AA-TATACGAA-----------------ATAGCAACATTACAAACTGAATAGTCGGAATCC------------------------GTTTNCTGGGTATTTGTTTTCC------------------CGTATA--GAGACACTCTGTAATCGCTTGAACTCTTTT----------------------CACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGTTGGTA----------AATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA----CATGCCCAAAT-TT---------TGT-CA--------AA----------AAATTG--------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAATT--GTTTGTAGCAAGTGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 22222222 7777777777777777777 4444444444444444444444444444444444444444 444444444444444444444 1111111 1111 1111 1111111111111111111111 111111111 22222222 1111111111 1111111 2222222222222222222 11111
lowQualScore : 0 22 44444444 0000000000000000000 8 8 8 8 0000000000000000000000000000000000000000 1 5 888888888888888888888 55 1 1111111 99999 1111 0 3 888 0 3 6666 999999 1 5555555555555555555555 0 3 0 11 0 2 2 77777 3 222222222 3 44444444 4444444444 9 3 0000000 5555555555555555555 44 555 999 33 3 99999
lowQualScore : . .. ........ ................... . . . . ........................................ . . ..................... .. . ....... ..... .... . . ... . . .... ...... . ...................... . . . .. . . . ..... . ......... . ........ .......... . . ....... ................... .. ... ... .. . .....
lowQualScore : 3 55 22222222 4444444444444444444 0 0 0 0 9999999999999999999999999999999999999999 0 0 222222222222222222222 55 8 8888888 44444 4444 2 1 555 5 1 2222 777777 8 8888888888888888888888 5 3 2 44 8 7 7 11111 1 333333333 3 22222222 6666666666 2 3 8888888 8888888888888888888 66 888 555 88 3 00000
consensus : GTTTTCAAATATTTCTGTACAAAATGTGAAATA--------AATATAC----------G--------AAA-TA-GCAACATTA-CAA-ACTGAATGA------AGTCG--------GAC--ATCA--C------CGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----AC----TCTTTTCACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT--------T-GGTA--------AATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA-CATG-----CCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
Reference ( family-4043 ) : GTTTTCAAATATTTCTGTACAAAATGTGAAATA--------AATATAC----------G--------AAA-TA-GCAACATTA-CAA-ACTGAAT--------AGTCG--------GA---ATC----------CGTTTNCTGGGTATTTGTTT---------TC---------CCGTATA--GAGACACTCTGTAATCGC-------TTGA----AC----TCTTTTCACACATT-GA---TTAAAA-AA----TGCTCTAG--GTGCATCATGT--------T-GGTA--------AATAAGT-ATCAATAAATACTCTACAGTAAGGA-AACTTTCAAA-CATG-----CCCAAAT-TT---------TGT-CA--------AA----------AAATT-G-------TAAAAAT-------------------TGGAA--CT---CTTC--AAAAGGAGGT-AGAA-AAAT-T-GTTTGTAGCAAGTGTC
gi|1 : AAAAAATACTCTACAGTTAGGG-GA-TTCCAAA-CATT-----CCCAAAT-TT---------TGT-CC--------AA----------AA-CT-GAAAACACTAAGAAC-------------------TGGAA--TT---CTTC--AAAAGGAGGC-GCAG-AAGT-TAGTTTGTAGTAAGCGTC
gi|10 : gtataaACACATTTGA---TTAAAA-AAACATTGCT--------GCATTATGT--------TCGGCC--------ATTAAGTCAT-AATAAATAC-CTACAATGAACACAGCTTTTA---CATG-----CTCGAATCTT---------TG--CATAAAACGGAA----------AAATGAG-------TTAAAAC-------------------TGGAA--CT---CTTC---AGAGAAGGT-AGAT-AGAA-G-ATTTA-AGCAAGTGTtctggaaattaacattcgatcaatatgaaatgaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccatgcatttattttagggcggatctcgatagattggagtacctaacgcagtgcatcaaggaaggcatgcggcttcactcacctgtcccagcgattatgagagtgaatctttctccatttgaaatagacaataacgtgatcccagctgaaagtaatatcgtgatcagcatttacggtttgcaccacaatcccgctgtttggggtgaagatcacatgacattcaaaccagaaaggttcacaaaggagaatgtcgagaagagaaacccgtttgcattttgtcctttctcaatagggcctaggtttgttaatattctaactt
gi|11 : ctgtaatcatGGATATTTGTTTGGAGAGCTTTT---------CCATATA--AAGGCACTCTGTAATCAC-------TGGT----AC----TCCTCTCA----TT-GG---T----------------CTTG--GTTCATCGTGT--------C-CAGA--------AATAAGT-ATCAATAAATACTATACCGTAAGGA-AACTTTCAAA-CATtttaactaaga
gi|12 : gGTATA--GAGAAACTCGGTAATCGC-------TTGA----AC----TCTCCTCACATATT-GATTTTTAAAA-AA----TACTC-AG--ATACATCATGT--------T-GGTA--------A--AATT-ATT--TAAATATTagc
gi|13 : gcttttgaGTATA--GAGATAATCTGTAATCAC-------TTAATTAAAC----TCTTTTCAAACGTT-GA---TTAAAA-AT----TGTACTAG--GT-----ATGT-------------A--------AAC---T-ATCAATAAACATTCTATTTTAAGGA-AACTTTCAAG-CATG-----TCCCAAT-TT---------agctggtatgcatttatagttcaaaa
gi|14 : GTTTTCATATATTTCTGTACAAAATGTG-AATA--------AATATACAAAACATGTAA--------AAA-TA-CCAACATAA-CAA-ACTGAATGA------AGTC
gi|15 : cgaacaaatcaacttctctCTCTGTAATCACGTTTACATTAG----ACACTGTCTTTTCAAACGTT-GAT--TTAAAA-AA----T----------TGTATCA-------------GGTA--------TGTAACT-ATCAATAAACATTCTATTTTAAGGA-AACTTTCAAG-CATT-----CCatttgggtcaaatttagtgtt
gi|16 : TAAGT-ATCAATAAATAC-----AGTAAGAA-AACTT-CAAA-CATG-----CTGAAAT-TT---------TGT-GA--------AA----------AAAAT-A-------TA--------------------------GAA--CT---CTTT--AAAACGAGAC-AGAA-GTATGT-GGCTGCAGCAAGTGa
gi|17 : GGATATTTGTTTGGAGAGCTTTT---------CCATACA--GAGACACTCTATAATCAC-------TGGT----AC----TCTTCTCATACATC-GA---TTAATA-AA----TGGTCTTG--GTTCA
gi|18 : tgCTGTACAGCAAGGA-AACTTTCACA-CATG-----CATAAAT-TT---------TGT-CA--------AA----------AAA-T-G-------TAAAAAT-------------------TTGAAACCTAGCTTTC--AAAAGGAGGT-AGAA-GA
gi|19 : ATAATTTACAGTATGGG-AACTCCCAAA-C-TGGCTGGCCCAAAT-TT---------TGT-CA--------AA----------AA-CT-G-------TAGAAAT-------------------TGGAA--CT---CTTC--TAAAGGAGGT-AGAA-ttct
gi|2 : cAAAAAATACTCTAC--TTAGGA----TTTCAAA-CATT-----CCCAAAT-TTATACAAAACTAA-AA--------AA----------AAATT-G--------AAGAAT-------------------GAAAA--CT---CTTCCAAAAAGTAGCG-ACAA-AAG------TTGTAGTAAGAGT
gi|20 : agGCTTTAAAATATTTCTGCACAAAATATT-AATA--------AATATataacatttggaaatcaacagcgtatcaatataatgaacagtatgcataattatatacctttacgaggtgtcattgtcgtatatttactttatacacattcatgtattatttagcggattcttgagtagatgtagatagtaccctaaccgggcatgcaatcaagaaggcatgcgcttcactcacctgtcccgcgatttatgagatgaatctttctccatttgaaataataatcacgctatccagctgagagttaatatcgtgatcagcatttacagttttgatcacccaatcccgctgtctgggtgaagatcacatggcatcaactgaaaatccaaggagaagtcggagaagagaagcccgttgtgcattcctttctctgctgtcctaggttttgttaatttttaactt
gi|21 : ttaaggacgcgcgcgaccaacaaattaaagttctctTTTGCCGGGTATTTATCT---------TC-------------ATA--GGAACACTCGGTAATCGC-------TGGA----AC----TTTTAAAACACATT-GA---TTAAAA-A
gi|3 : TTTTCAAATATTTCTGTACAAAATAT-AAATA--------TAGAAAC----------A--------AAA-CATGCAACAATAGCACCACT--AT--------AACTG--------GAT--ATT----------TGTTTTCTGGGC------TT---------TC---------CAGTATATAGAGACACTTTGTAATTTT-------TTGA----TC----GCTTTTCACACATT-GA---TTAAATTCA----TGTTTTAG--GTTCACCATATGATATCGAT-GGTA--------AGTGAGT-ATCAATAAATATTATACAGTAAGAC-AACTCTCAAA-CATG-----CCCAGAT-TT---------GGT-CA--------AACCGACGCTGTGAATT-G-------TTAAAAT-------------------TGGAA--CT---CTCCA-AAAAGGAGGT---AA-AAAT-T-GTTTGTAGCA
gi|4 : taaagacacttcctacaaacaaatcgaacttcctgtTTTCAAATATCTCTGCACAGGATGGAAAATA--------AAGGTGC----------GGGTCGCAAAAA-TT-GTAACATTA-CAA-ACTGAATTTGGCTAAAGTCGCGTTGATAAA---ATCATTCG-----CGTTTACTGGGT--TCGCTC---------TC---------CCG------------CTC---AACCTC-------TT--------------TCTCCGT-CATT-GA---TTAAAC-AT----TGCTGTAGAAGTGCTTCATGT--------T-GTTG--------AATAAGT-ATCAATAAATATTC-----TGAAGA-AAGTTTCAAA-CATT-----TTAAAAT-TT---------TGT-C---------AA----------AAATT-G---------AAAAT-------------------TGGAA--TT---CTTC--TAAAGGAGGTAAGAA-AATT-T-GTGTGTAGC
gi|5 : ttagagatgcttgcaacaaaccacaaggaccactcagaGTTTTCAAACATTTCGGAACAAAATGTGAA-TA--------AATATAC--------------------AA-TA-ACAACATTA-CCA-ACTGAATGA------AGTCA--------AACTGATCAAATTGTAAGTGTTTTTGGGGTATTTGTTT---------GC---------CCATATA--AAGGCACTCTGTAATCAC-------TTGT----AC----T------ACACATT-GT---TTAAAA-AA----TGCTCTGA--GTGCATCATGT--------T-GGTATTAAAGTAAATAAGT-ATTAATAGATACTCTACAGTTACGA-AACTTTCAAAACTTG-----CCCCAAT-TT---------TAT-CA--------AA----------AAATT-G-------TAAAAAC-------------------TGGAA--CT---CTTA--TAAAGGAGGT-AGAA-AAATGT-GTTTGTAGCAAGTGTC
gi|6 : TTTCAAATTTTTCTATACAAAATGTGAAACAGTATGCAGAATGTAT----------G--------AAAATA-GCAACATTA-CAA-ACTGAA---------AGTCA--------GG---A------------CGTTTACTGGGTATTTGTTT---------TCAGAGAATCTTTGTATA--GAGACACTCTGTAATCGC-------TTGA----AC----TCTTTTCACACATT-GA---T-AAAA-AT----TACTCTAG--GTGCACGATAT--------T-GATA--------TATAAGA-ATCAGTAGAAACTCTATATTCAGGA-AACTTTCAAA-CATG-----CCGAAAA-TT---------TGTCCA--------AA----------AAA---G-------TAAAAAT-------------------TTGAA--TC---CTTC--AAA------T---------T-T-GTTTGTAGCAAGTG
gi|8 : TGCTT---------TC---------TCGTATA--GAGGCACACTTTAATCGC-------GTGA----ACT---TCTTTCCCCACATT-GA---TAAAAA-AAAT--TGCTCTAG--GAGCATCATTG--------T-GGTA--------AATCTGT-ATTAA-AAATTCTCTAGAGTGAAGA-AACTTACAAA-CATG-----GCCACAT-TT---------TGT--A--------AA----------CAACT-G-------TAAAAATTTAAAAAAAAAAAAAAAAATGGAA--CT---TGTC--AAAAGGAGGT-AAAACAAAT----TTTGTAGCAAG
gi|9 : gggttttgttgtcaaACACATT-GA---TTAAAA-AAAT--TGCT--------GCATTATGT--------T-GGCC--------AATAAGT-ATAAATAA-TACCCTACAATAAGAA-AAGTTTTAAA-CATG-----CTCGAAT-TT---------TGT-CATAAAACGGAA----------AAA-T-G-------TTAAAAT-------------------TGGAA--CT---CTTC--AGAAGAAGGT-AGAA-AAG------TTGTAGCAAGTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTCAGGTCAGACCTATCTAAGTTAGGTTACCTGACCCAGTGCATTAAGGAGAGCATGCGCATGTACCCCCCAGTGACCTTTGTACAGCGGGTCACTACCAAGGAGACAGAGCTGGACGGCCACCCCATTCCCGCGGGGACGACCATCGGAATCCAGATTTACAACCTCCATCACAACAAGGCAGCATGGGATGACCCCTACACGTTTAAACCAGAGCGATTTGCTCCGGAGAAGGAGAGGAATGAAAAGAACGAGACGTTTGCTTTCGTTCCATTTTCAGCAGGACCCAGGT
Unaligned ( gi|22 ): TAGGAATGATAACCATCATCATTTGGAGAAAATGAATA