lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 222 11 2222 1 1 66666 33333333333 555555555555555555555555555555555555555555555555555555555555555555555555555555 2 555555555 1 8888888888888888
lowQualScore : 2 7 8 0 5 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 111 88 9 7777 3 2 7 2 3 44444 6 77777777777 111111111111111111111111111111111111111111111111111111111111111111111111111111 2 0 6 6 555555555 5 6 2 5555555555555555 6 6
lowQualScore : . . . . . .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ... .. . .... . . . . . ..... . ........... .............................................................................. . . . . ......... . . . ................ . .
lowQualScore : 5 7 7 0 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 333 33 0 7777 7 0 3 0 0 55555 0 55555555555 555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 0 0 000000000 0 0 5 0000000000000000 0 0
consensus : CTAAANATTNAGA-CAGAGA-AAATTCGAGN-TGC--ACATACATNCA-ATGA--ATTTTNG-CGTNAAG-AAAAATTC-------CATAACTC--T-------ATC------AA-ATGT-CCT--TTT-TTCGATCTTGCAAAGTNATATC-TTGT-TGAC-CCGANATTACG-----AACTTACG-TGGATG-T-ACCTCAATTTCATCCCAGTTTT---ATGAC--ATT---TGCTACAAAGTG-CAATGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG-----GCTAATNTNT----AACGAAA-TGT--AATATCGATCAT--AGCCNG-GGCAAGACG-AAT-AAATGT--G-ANGTCGT-GTCT-TGTTTTGACGTCATAATATAAATNATG--GTGGCNGATCTAAC---GCTGAG--GAAACNGTTCTG----TGCAACTCANA-AACACAAC-TCTGNT-TTTC-A-CGCATCNNAAAATAGCAA--CCACTCA-CATCAAGTTTCNAGTTTCAACTCCTNGGTATNACCCCGGTGATGNGAAACGCGTGGTGGCAGNACCCTTCACCCACCCTCACCCCCACCCATGATTATCATTGCCTCNGGGNTAGNCTTAGNATGCACGCNACGC---CAANATTGAAAATCAACCATGNCAATTTACTTACTACGACAGANAAAATNCATACNTATTNCGGCTATGGAAATA
Reference ( gi|1 ) : CTAAAGATTTAGAGCAGAGA-AAATTCAAGTTTAC-CATATACATGCA-ATGA--TTTTTAAATGTCAAGTAAAAACTCG------CATAATTC--T-------ATC------AA-CTGT-CCT--TTT-TTTAATCTTGCAAAGTGACCTC-TTAT-TGAC-CAGAGATTATG-----AACTGATG-TGGGTGGTTATATCAATTTCATCCTAGTCTT---ATGAT--ATT---TGCTGCAAAGTT-CAGTGCATCAT-ATTG---ATTG-GAA-A-T-GAGTAAGGCCTAG---AGGCTAATGTAT----AACGAAA-TGT--AATATCTATCAT--ATCCAG-GACAAGAC--AAT-AAATGT--G-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAG--GAGGCTGTTTTA----TGCAATTCATA-AACACAACATATAGTGTTTC---CACACCTAGAAATAGCAA--CCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCCAATAATGTGTAACGTA--GTGACAGTGCCC--C-CCC-CCCTT--------CCA--------ATTGTCTTAGGGCT-GTATTAACATGTATACAATGCTGTCTAGAT-GAAAATCAGCTATTCTATTTTGTTTCCTGTGACAAAGATAGTTCA---GTA--ATGGCCATGAAAGTAAAATTATTTTACCAAAACCAAGCTTTGATGGTTCCTGTATGACATGACTCAGTTTGATT
gi|2 : CTAAACATTAAGA-CAGAGA-AAATTCAAGT---C-AACACATATGCA-A-----------------------ACATTCC------C-TAACTCCTT-------A-C------AA-ATGT-TCT--CT-----GATCTTTCAAAGAGAGATC-TTTT-TGAC-C--------TG-----A---GAT------TG------------TCATCCCAATTTT---GTGA---ATC---C-CTACATAGTG-AAAT-TATC-C-AGTG---ATTA-GAA-AAT-GAGCATGGT---------GCT------T----AACAAAAATGT--AAAATCAATCAC--AGCCTG-GGCAAGAT--GAT-ACATGT--A-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTA-----TG-TAG---TAAC-----------GAGACATCTCTG----TGCAA--CAGAGAATACAA-----ACT-TCTCTATCACATCCAACAATAGCAA--CATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTA-TACCCTGGTGATGAGAAACATG--GTGACAGT-CTCTTC-CTC-CTCTT--------C
gi|8 : cctGATTGCGA-CAGAAA-AAAATCGAGAGTACACATA-ACAT-CAGATGG--ATTTTCATCGTC--GGAAAAACCCAAACTACCATAATAC--TTAACGATGTCTTTTTAAATCTGT-CCT--TTTTTTTAATCTCGCAAAGTCACATC-TTGT-TGAC-ACGAGATTACG-----AACTTTCG-TGGATagg
gi|5 : TTAGGATAAAGGGAAATTCGGGT--------ATACATA-A-ATGA--ATTTTGGACGTTAA-----------------TATAGCTC----------ATC--------------------TT-TTTGATCTTGGAAAGTTATATC-TTGT-TGAG-CTGATATTACG-----AACTTTCG-TGGATTATAATCGCAATTCTATCCCAGTTTT---AT--C--ATTCCATGC-ACAAAGT---AATGCGTCAT-ATTG---ATTA-GAA-A-T-CAGTA-GGC---------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCAT--AGCCAA-GGCCAAACGGAAC--AATGT--
gi|3 : aA-AAATTCTAGACTGC--ACATTCATCTG-ATAAAATTTTTA--TGTGAAGTAAAAATTC-------C-TAATTA----------ACC------AA-ATTTACCTGCCTT-TTCAATC----------ATCTCGTTATCTTACACATATATTAC-----------ATG-TA-------AC-TCAATTTCATCCAAGTCTTTTAATAAC--ATT---TGC-ACGA--TG-CAATGCTTAAC-ACTGT--ATTG-GAA-A-T-TGGT-ATGCTTAA-------TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGAT---GTGGCAAGAC--AA--AAGTCTTAA-AAGT-------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAA------TGAAATAAATCAGTTCTAACTGTGCAA--CA-A-AACACAA
gi|6 : aT--TTT-TTTA-TCTTGCAAAGTGATATC-TCAT-TGAT-CTTAGATCAGGAATTTAACTTACATTGATTGCTTACCTCAATTTCATCCCAGTCTC---ATGAT---TC---TAT------------GTGCATTGTAATTGGCCATTGAGAA-A-T-GAAT
gi|16 : ctctaaagagggacagagaaaattcgagctgctttcatgttcctataatcctaaggatcataaT--TTT-TTCAATCTTGCAAAGTTTCATT-TTGT-TGAC-CCAACATGATG-----Attaaag
gi|10 : ttttaaattttAATTCCATCCTAGTTTT---GTGATCCA-T---TG-TGCA---TTGCAGTGCGCCGT-ATTG---ACTG-GAATA-TCGATCATAGCCTAGGCAAGAC-AATAGAT----A--GGCA-TGG--CGTTTCTTTTAT--TGTCAT-GATATGGCG-GATCAAAT-T--G-AGGTTGCCGTTT-TGTttcttctttggat
gi|10 : t-TGG--AATATCGATCAT--AGCCTA-GGCAAGAC--AAT-AGATAG--GCATGGCGT----T-TCTTTTATTGTCAT--GAT--ATG-----GCG---GATC-AA----ATTGAG--GTTGCCGTTTTG----TGCAACTGACA-Agcaactgacaac
gi|15 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacATGATGCAATGACGGATCTAATTGAGCTGAG--GAAACTG-------------ATTTATA-TACA-AAC-TCTGGT--TTCAA-CGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTc
gi|4 : TTTC---CACATCACAAAATAGTAA--CCATTCA-CATCAAGTTTCTAGTT-CAACTCCTGGGTATA--CCCAGTAATGT--AATGCATGGTAGCAGGACCC--CACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAAAATGCATGCCA------CAAGAT-GAAAATCAACCATGCCA-----TTTACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|12 : aaacctctgggct--------ATTACCTCCGAGAT-GGCTTAGCATGCACACA-CGC-----ACATTGAAAATCAACCATGATAATTTACTTACTACGACAAACAAAATATA---ATATTATGACTATGGAAATAtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TAATTATCCCATCCCCTCTGCGTTAGGATAGTTAAGCATGAAAAAAATCAACCATGCCCCCCTTACTTACTATAAACAGAAATTGTGCTTATTTTCATGGTAAGCATAACATCGCATGATCATTTATAGTATCAGCCTGGTTATGGGCTTTTGAATGGACTGCGAGG
Unaligned ( gi|9 ): TGATCTCTTTGGTTTAGGGTTAGTTTAGCCATGTCACATGCAATATGAGTATCAAAACCATGCCACACAGAATGACAGAGAAATTTCATTAATGTATTATTTGTAATATAGAGGCTTGACATCAAATGATCCTGATCACTCGATTGATTCTAGGCATGTAGTGGA
Unaligned ( gi|11 ): AAATCAAACATGCCACTTTACTTACCATAACAGAAAAATGGTACTTGGATTCAATTGAAAGATGCAATTGTAAGTTCTACATCAAATGATCATAAATCAGCTTGATTAAAAAATTATTTCGAATGGATTTCA
Unaligned ( gi|13 ): AATCTACCATGCAATTTTACTTAACTATCACAGAGAAACTGACTTAATGTAACTGTAAATTTGGCAATAAATGTCAATAAAGATCAGCTTGATTGATTTTAGGCTTCTGGTTGGATCTCAATG
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Unaligned ( gi|17 ): CATCTGTTTTGATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACGAACTTTCGTGGATTATA
Unaligned ( gi|18 ): GTTAATTTCATCCTGGTCTTGTGCTCCCTTACACAATGCAGTGCGCC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 11111 111 33333333333 111 11111 3333333333333333 111 44444444444444444444 11 22222222 44444444444 1 3333 4444444 11111 111 1 111111 222 11 1 333 111 33 11 3333 2222 444444444444 2 55555555555555 1111 555555555555555
lowQualScore : 1 0 22 8 6 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333 5 2 2 66 1 4 5 0 22222 000 5 3 0 44444444444 111 88888 8888888888888888 2 999 888 6 6 6 6 99 22222222222222222222 8 11 22 88888888 33333333333 0 2 0 3 7 3 9999 77 3333333 2 8 1 3 88888 555 1 8 2 0 0 999999 222 333 33 1 0 9 1 6 3 3 1 333 0 0 555 55 0 0 33 2222 3 3333 333333333333 11 1 3 44 11 11 88888888888888 1111 8 8 2 1 111111111111111 0
lowQualScore : . . .. . . ..................................................................................................... ... . . . .. . . . . ..... ... . . . ........... ... ..... ................ . ... ... . . . . .. .................... . .. .. ........ ........... . . . . . . .... .. ....... . . . . ..... ... . . . . . ...... ... ... .. . . . . . . . . ... . . ... .. . . .. .... . .... ............ .. . . .. .. .. .............. .... . . . . ............... .
lowQualScore : 0 8 88 0 7 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555 0 8 6 99 4 2 9 2 55555 000 6 0 7 22222222222 777 55555 7777777777777777 2 000 333 7 7 7 7 22 44444444444444444444 0 00 44 00000000 55555555555 0 5 2 2 0 8 0000 00 8888888 2 0 0 8 44444 222 0 0 5 0 2 888888 222 222 88 2 0 8 0 5 2 5 0 777 7 7 333 33 7 7 33 0000 0 0000 222222222222 77 0 7 77 77 33 00000000000000 8888 0 0 8 0 333333333333333 7
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTNA-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----AAC---TTNCGTGGA-TG-TT-ATCTCAATTTCATCCCAGTCTT---ATGA--CATT---TGCTACAAAGTGCAATGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCT--AGGCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGAAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAAC-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTAT--CCCCGGTAATGTG-AA--CGTGGTGACAGTGCCC--CACCCNCCCTCACCCCCACCCATGATTATCATTGCCTTAGGGNT-GTNTTAACATGCATAC-ACGC---C-AGA-TGAAAATCAACCATGCCANTTT-ACTT-ACTATGACAGAGAAAGTTCATA-NTA--ACGGCTATGAAAATA
Reference ( family-4003 ) : CTAAANATTNAGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCAATGAA-TTTTNG-CGTN--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNATATCTTG--TTGACCCGANATTACG-----AAC---TTACGTGGA-TG--T-ACCTCAATTTCATCCCAGTTTT---ATGA--CATT---TGCTACAAAGTGCAATGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCT--AGGCTAATNTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ANGTCGT-GTCT-TGTTTTGACGTCATAATATAAATNATG--GTGGCNGATCTAAC---GCTGAGGAAA-CNGTT----CTGTGCAACTCANA-AACACAAC-TCTGN--T-TTTCACGCATCNNAAAATAGC--AACCACTCA-CATCAAGTTTCNAGTTTCAACTCCTNGGTATNACCCCGGTGATGNGAAACGCGTGGTGGCAGNACCCTTCACCCACCCTCACCCCCACCCATGATTATCATTGCCTCNGGGNTAGNCTTAGNATGCACGCNACGC---CAANATTGAAAATCAACCATGNCAATTT-ACTT-ACTACGACAGANAAAATNCATACNTATTNCGGCTATGGAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTAAATGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATG-----AAC---TGATGTGGG-TGGTT-ATATCAATTTCATCCTAGTCTT---ATGA--TATT---TGCTGCAAAGTTCAGTGCATCAT-ATTG---ATTG-GAA-A-T-GAGTAAGGCCTAGAGGCTAATGTAT----AACGAAA-TGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAGGAGG-CTGTT----TTATGCAATTCATA-AACACAACATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCCAATAATGTGTAA--CGTAGTGACAGTGCCC----CCCCCCCT----TCCA------------ATTGTCTTAGGGCT-GTATTAACATGTATACAATGCTGTCTAGA-TGAAAATCAGCTATTCTATTTT-GTTT-CCTGTGACAAAGATAGTTCA---GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTT---GTGATCCATTG--TGC-----ATTGCAGTGCGCCGT-ATTG---ACTG-GAATA-TCGATCATAGCCT--AGGCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : t-TGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT-TTCT-TTTATT---GTCATGATA------------TGGCGGATCAAA-----TTGAGGTTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATCAAACATGCCACTTT-ACTT-ACCATAACAGAAAAAc
gi|12 : TTATTACCTCCGAGAT-GGCTTAGCATGCACAC-ACGC-----ACATTGAAAATCAACCATGATAATTT-ACTT-ACTACGACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacacAATCTACCATG-CAATTTTACTTAACTATCACAGAGAAAtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAATTGAGCTGAGGAAA-CTG-------------ATTTATA-TACA-AAC-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTctgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATG-----A
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACG-----AAC---TTTCGTGGA-Tttcttctttggat
gi|2 : catctgCTAAACATTAAGA-CAGAGA-AAATTCAAGT-CA---ACACA-TATGCAA---------------------------ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGA-------------------------GA-T------------TGTCATCCCAATTTT---GTGA---ATC---C-CTACATAGTGAAAT-TATC-C-AGTG---ATTA-GAA-AAT-GAGCATGGT------GCT------T----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATG-A-----TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTAT---GTAG------TAAC---------GAGA-CATCT----CTGTGCAA--CAGAGAATACAAA-CTTCT--C-TATCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTAT-ACCCTGGTGATGAGAAA--CATGGTGACAGT-CTCTTCtata
gi|3 : cctA-AAATTCTAGACTG--CACATT-CATCTGATAAAATTTTTA-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACA-----CATATATTAC----A-TG--T-AACTCAATTTCATCCAAGTCTTTTAATAA--CATT---TGC-ACGA--TGCAATGCTTAAC-ACTGT--ATTG-GAA-A-T-TGGTAT-GCTT--AA--TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAAT---G--AAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAActcctcttcagg
gi|4 : aC-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAGTT-CAACTCCTGGGTATA--CCCAGTAATGT--AATGCATGGTAGCAGGACCC--CACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAAAATGCATGCCA------CAAGA-TGAAAATCAACCATGCC------ATTT-ACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTTGGACGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACG-----AAC---TTTCGTGGATTA--TAATCGCAATTCTATCCCAGTTTT---AT----CATTCCATGC-ACAAAGT--AATGCGTCAT-ATTG---ATTA-GAA-A-T-CAGTA-GGC------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-TG--C-------------------TTTCA-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGAATTTAAC---TTACATTGATTGCTT-ACCTCAATTTCATCCCAGTCTC---ATG----ATT-----CTA-----TG---TGCATTGTAATTGGCCATTGAGAA-A-T-GAAT
gi|8 : ctATTGCGA-CAGAAA-AAAATCGAGAGTA--CACATAACATCAGATGGA-TTTTCATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACG-----AAC---TTTCGTGGA-Tttaaag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAATTATCCCATCCCCTCTGCGTTAGGATAGTTAAGCATGAAAAAAATCAACCATGCCCCCCTTACTTACTATAAACAGAAATTGTGCTTATTTTCATGGTAAGCATAACATCGCATGATCATTTATAGTATCAGCCTGGTTATGGGCTTTTGAATGGACTGCGAGG
Unaligned ( gi|9 ): TGATCTCTTTGGTTTAGGGTTAGTTTAGCCATGTCACATGCAATATGAGTATCAAAACCATGCCACACAGAATGACAGAGAAATTTCATTAATGTATTATTTGTAATATAGAGGCTTGACATCAAATGATCCTGATCACTCGATTGATTCTAGGCATGTAGTGGA
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Unaligned ( gi|18 ): GTTAATTTCATCCTGGTCTTGTGCTCCCTTACACAATGCAGTGCGCC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111111111 1111 111 33333333333333333333 111 333333333 2222 1 11 22222222 333333333333333 3333333 11111 111 1111 1 333333333333 11 1 3333 333 1 1 33333333 222222 1 1 33333333333 222222222 11
lowQualScore : 0 22 8 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 5 2 2 66 1 4 1 2 0 555555555555 2 0 8888 2 4 000 66666666666666666666 55 0 0 999 888 6 6 6 6 99 777777777 1 1111 0 11 22 88888888 111111111111111 3 7 3 1 66 1 8 1 2222222 1 8 1 3 88888 555 1 8 2 7777 0 000000000000 333 33 4 0 9 0 6 3 1 5555 0 111 0 2 6 1 33333333 333333 0 0 1 0 44 0 3 33333333333 55 77 5 88 5 5 777777777 33 2
lowQualScore : . .. . . ...................................................................................................... ... . . . .. . . . . . ............ . . .... . . ... .................... .. . . ... ... . . . . .. ......... . .... . .. .. ........ ............... . . . . .. . . . ....... . . . . ..... ... . . . .... . ............ ... .. . . . . . . . .... . ... . . . . ........ ...... . . . . .. . . ........... .. .. . .. . . ......... .. .
lowQualScore : 8 88 0 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 0 8 2 99 4 2 0 0 2 666666666666 8 2 2222 3 0 000 99999999999999999999 00 9 4 000 333 7 7 7 7 22 999999999 0 2222 0 00 44 00000000 222222222222222 2 0 8 0 88 4 2 0 0000000 4 0 0 8 44444 222 0 0 5 0000 0 555555555555 555 88 2 0 8 2 5 2 0 3333 7 000 7 0 0 0 55555555 000000 2 2 0 0 00 0 2 00000000000 88 99 7 11 7 7 222222222 88 0
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT---CGCTACAAAGTGCAGTGCGTCGT-ATTG---ATT-G-GAA-AT-GAGTATGGCCTAG--GCTAATGTNT----AAC-GAAATGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTAT-N--CCCGGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAGC-ATGCACACA----CGC-N-ANATGAAAATCAA--CCATG-CCACTTTACTT-ACTAT-GACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
Reference ( family-4003 ) : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCCAGTCTT---ATGA--CATT---TGCTACAAAGTGCAATGCGTCGT-ATTG---ATT-G-GAA-AT-GAGTATGGCCTAG--GCTAATGTNT----AAC-GAAATGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGAAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTAT-C--CCCGGTAATGTG-A-ACGTGGTGACAGTGCCCCACCCNCCCTCACCCCCACCCATGATTATCATTGCCTTAGGGNT-GTNTTAAC-ATGCATACA----CGC-C-AGATGAAAATCAA--CCATG-CCANTTTACTT-ACTAT-GACAGAGAAAGTTCATA-NTA--ACGGCTATGAAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTA-AATGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATG-----A-AC---TGATGTGGG-TGGTTATATCAATTTCATCCTAGTCTT---ATGA--TATT---TGCTGCAAAGTTCAGTGCATCAT-ATTG---ATT-G-GAA-AT-GAGTAAGGCCTAGAGGCTAATGTAT----AAC-GAAATGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAGGAGG-CTGTT----TTATGCAATTCATA-AACACAA----CATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGT-TTTCCCAATAATGTGTA-ACGTAGTGACAGTGCCCC--CCCCCCTT--------CCA--------ATTGTCTTAGGGCT-GTATTAAC-ATGTATACAATGCTGT-CTAGATGAAAATCAG--CTATT-CTATTTTGTTT-CCTGT-GACAAAGATAGTTC--A-GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTT---GTGATCCATTG--TGC-----ATTGCAGTGCGCCGT-ATTG---ACT-G-GAATATCGATCATAGCCTAG--GCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : tTGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT----T-TCTTTTATTGTCATGATA------------TGGCGGATCAAA-----TTGAGGTTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATCAA--ACATG-CCACTTTACTT-ACCAT-AACAGAAAAAc
gi|12 : TTATTACCTCCGAGAT-GGCTTAGC-ATGCACACA----CGCAC-AT-TGAAAATCAA--CCATG-ATAATTTACTT-ACTAC-GACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacacAATCTA--CCATG-CAATTTTACTTAACTAT-CACAGAGAAAtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAATTGAGCTGAGGAAA-CTG-------------ATTTATA-TACA-AA----C-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTctgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATG-----ATTC---TTCTTTGGA-T
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACG-----A-AC---TTTCGTGGA-T
gi|18 : catctgTTAATTTCATCCTGGTCTT---GTG---C-TC---CCTTACACAATGCAGTGCGCCtata
gi|2 : gCTAAACATTAAGA-CAGAGA-AAATTCAAGT-CA---ACACA-TATGC-------------------------AA---ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGAGAT--------------------------TG-TCATCCCAATT-----------TT---GTGA---ATC---C-CTACATAGTGAAAT-TATC-C-AGTG---ATTAG-AAA-AT-GAGCATGG------------TGCTT----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATG-A-----TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTATGTAGTAAC------------------GAGA-CATCT----CTGTGCAA--CAGAGAATACAAACTTC-TCTA-------TCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTATAC--CCTGGTGATGAGAA-ACATGGTGACAGT-CTCTTCCTCCTCT
gi|3 : cctA-AAATTCTAGACTG--CACATT-CATCTGATAAAATTTTT-A-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACA-----C-ATATATTACATG-------TAACTCAATTTCATCCAAGTCTTTTAATAA--CATT---TGC-ACGA--TGCAATGCTTAAC-ACTGT--ATT-G-GAA-AT-TGGTAT-GCTTAA----TAATGTGTATAAAAC-AAAATGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAAT---G--AAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAA----tcagg
gi|4 : a----C-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAGTT-CAACTCCTGGGTAT-A--CCCAGTAATGTA-ATGCATGGTAGCAGGACCCCACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAAA-ATGCATGC-----CAC-A-AGATGAAAATCAA--CCATG-CCAT-----TT-ACTAT-GACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTTGGA-CGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACG-----A-AC---TTTCGTGGATTA-TAATCGCAATTCTATCCCAGTTTT---AT----CATTCCATGC-ACAAAGT--AATGCGTCAT-ATTG---ATT-A-GAA-AT-CAGTA-GGC------GC-AATCTTT----AGC-GAAATGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-TG--C-------------------TTTC-A-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGAATTTA-AC---TTACATTGATTGCTTACCTCAATTTCATCCCAGTCTC---ATG----ATT-----CTA-----TG---TGCATTGTAATTGGCCATT-GAGAA-AT-GAAT
gi|7 : ctAAAATCAA--CCATGCCCCCCTTACTT-ACTATAAACAGAAAttaaag
gi|8 : taattatcccatcccctctgcgttaggatagttaagcatgaaaGATTGCGA-CAGAAA-AAAATCGAGAGTA--CACATAACATCAGATGGA-TTTTC-ATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACG-----A-AC---TTTCGTGGA-Tttgtgcttattttcatggtaagcataacatcgcatgatcatttatagtatcagcctggttatgggcttttgaatggactgcgagg
gi|9 : TGATC-TCTTTGGTTTAGGGTT-AGTTTAGCCATGT-CACA----TGC-A-ATATGAGTATCAAAACCATG-CCAC---ACAG-A--AT-GACAGAGAAATTTCAT---TA--AT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111111111 11111 111 333333333333333333333 111 333333333 2222 11 22222222 333333333333333 3333333 11111 111 1111 1 333333333333 11 1 11 11 333 1 1 11111 11111 111 444444444444444 222222222 11
lowQualScore : 0 22 8 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 5 2 2 66 1 4 1 2 0 555555555555 2 0 55555 2 000 777777777777777777777 55 0 999 888 6 6 6 6 99 777777777 1 1111 8 11 22 88888888 111111111111111 3 7 3 1 44 1 8 1 2222222 1 8 1 3 88888 555 1 8 2 7777 0 000000000000 333 33 4 0 9 0 99 1 88 1 44 111 0 2 3 77777 6 22222 6 000 8 444444444444444 1 88 77 5 666 5 000000000 33
lowQualScore : . .. . . ....................................................................................................... ... . . . .. . . . . . ............ . . ..... . ... ..................... .. . ... ... . . . . .. ......... . .... . .. .. ........ ............... . . . . .. . . . ....... . . . . ..... ... . . . .... . ............ ... .. . . . . .. . .. . .. ... . . . ..... . ..... . ... . ............... . .. .. . ... . ......... ..
lowQualScore : 8 88 0 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 0 8 2 99 4 2 0 0 2 666666666666 8 2 22222 4 000 333333333333333333333 00 4 000 333 7 7 7 7 22 999999999 0 2222 0 00 44 00000000 222222222222222 2 0 8 0 88 4 2 0 0000000 4 0 0 8 44444 222 0 0 5 0000 0 555555555555 555 88 2 0 8 2 88 0 33 0 00 000 7 0 3 22222 7 55555 0 000 0 000000000000000 0 88 99 7 777 7 000000000 88
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-T--GCACATA-CATNCGATGAA-TTTT-N-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-T-G-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCT--AGGCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTA--TACCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACAC-ACG----CAANA-TGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
Reference ( family-4003 ) : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-T--GCACATA-CATNCGATGAA-TTTT-N-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-T-G-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCT--AGGCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTA--TNCCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACAC-ACG----CNANA-TGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTAA-A-TGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATG-----A-AC---TGATGTGGG-TGG-TTATATCAATTTCATCCTAGTCTT---ATGA--TATT-T---GCTGCAAAGTTCAGTGCATCAT-ATTG---ATTG-GAA-A-T-GAGTAAGGCCTAGAGGCTAATGTAT----AACGAAA-TGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAGGAGG-CTGTT----TTATGCAATTCATA-AACACAA----CATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCC-AATAATGTGTA-ACGTAGTGACAGTGCCCC-CCCCCCTT-----CCA------------ATTGTCTTAGGGCT-GTATTAA-CATGTATACAATGCTGTCTAGA-TGAAAATC--AGCTATT-CTATTTTGTTT-CCTGTGACAAAGATAGTTC--A-GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTT---GTGATCCATTGT---GC-----ATTGCAGTGCGCCGT-ATTG---ACTG-GAATA-TCGATCATAGCCT--AGGCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : t-TGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT----T-TCTTTTATTGTCATGATA------------TGGCGGATCAAA-----TTGAGGTTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATC--AAACATG-CCACTTTACTT-ACCATAACAGAAAAAc
gi|12 : C-TTATTACCTCCGAGAT-GGCTTAG-CATGCACAC-ACG----C-ACATTGAAAATC--AACCATG-ATAATTTACTT-ACTACGACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacaAATC--TACCATG-CAATTTTACTTAACTATCACAGAGAAACTtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAATTGAGCTGAGGAAA-CTG-------------ATTTATA-TACA-AA----C-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATG-----ATTC---TTCTTTGGA-T-
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACG-----A-AC---TTTCGTGGA-T-
gi|18 : catctgTTAATTTCATCCTGGTCTT---GTG---C-TC-C---CTTACACAATGCAGTGCGCCtata
gi|2 : gCTAAACATTAAGA-CAGAGA-AAATTCAAGT-C--A-ACACA-TATGC--------------------------AA---ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGAGAT--------------------------T-G-TCATCCCAATTT-----------T---GTGA---ATC-C----CTACATAGTGAAAT-TATC-C-AGTG---ATTA-GAA-AAT-GAGCATGG------------TGCTT----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATGA------TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTATGTAGTAAC------------------GAGA-CATCT----CTGTGCAA--CAGAGAATACAAACTTC-TCTA-------TCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTA--TACCCTGGTGATGAGAA-ACATGGTGACAGT--CTC-TTCCTCCTC
gi|3 : cctA-AAATTCTAGACT--GCACATT-CATCTGATAAAATTTT-T-A-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACA-----C-ATATATTACATG--------TAACTCAATTTCATCCAAGTCTTTTAATAA--CATT-T---GC-ACGA--TGCAATGCTTAAC-ACTGT--ATTG-GAA-A-T-TGGTAT-GCTT--AA--TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAAT---G--AAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAA----ttcagg
gi|4 : a----C-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAG-TTCAACTCCTGGGTA--TACCC-AGTAATGTA-ATGCATGGTAGCAGGACCCCACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAA-AATGCATGC--CA----CAAGA-TGAAAATC--AACCATG-CC-----ATTT-ACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTT-GGA-CGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACG-----A-AC---TTTCGTGGATT-A-TAATCGCAATTCTATCCCAGTTTT---AT----CATT-CCATGC-ACAAAGT--AATGCGTCAT-ATTG---ATTA-GAA-A-T-CAGTA-GGC------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-T--GC-------------------TTT-C-A-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGAATTTA-AC---TTACATTGATT-GCTTACCTCAATTTCATCCCAGTCTC---ATG----ATT------CTAT--------GTGCATTGTAATTGGCCATTGAGAA-A-T-GAAT
gi|7 : ctCCCATCCCC-TC--TGCGTTAGGATA-G-TTAAG-CATG---------------AAA---AAAATC--AACCATGCCCCCCTTACTT-ACTATAA-ACAGAAATTttaaag
gi|8 : taattatGATTGCGA-CAGAAA-AAAATCGAGAGT--ACACATAACATCAGATGGA-TTTT-C-ATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACG-----A-AC---TTTCGTGGA-T-gtgcttattttcatggtaagcataacatcgcatgatcatttatagtatcagcctggttatgggcttttgaatggactgcgagg
gi|9 : TGATC-TCTTTGGTTTAGGGTT-AGTTTAGCCATGT-CAC-ATG----CAATA-TGAGTATCAAAACCATG-CCAC---AC---AGAATGACAGAGAAATTTCAT---TA--ATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111111111 11111 111 333333333333333333333 111 333333333 2222 11 22222222 333333333333333 3333333 11111 111 1111 1 333333333333 11 1 11 11 333 1 1 11111 11111 111 3333333333333 222222222 11
lowQualScore : 0 22 8 6 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 5 2 2 66 1 4 1 2 0 555555555555 2 0 55555 2 000 777777777777777777777 55 0 999 888 6 6 6 6 99 777777777 1 1111 8 11 22 88888888 111111111111111 3 7 3 1 44 1 8 1 2222222 1 8 1 3 88888 555 1 8 2 7777 0 000000000000 333 33 4 0 9 0 99 1 88 44 111 0 2 3 77777 6 22222 6 000 8 7777777777777 1 1 0 77 5 666 5 000000000 33
lowQualScore : . .. . . ....................................................................................................... ... . . . .. . . . . . ............ . . ..... . ... ..................... .. . ... ... . . . . .. ......... . .... . .. .. ........ ............... . . . . .. . . . ....... . . . . ..... ... . . . .... . ............ ... .. . . . . .. . .. .. ... . . . ..... . ..... . ... . ............. . . . .. . ... . ......... ..
lowQualScore : 8 88 0 7 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 0 8 2 99 4 2 0 0 2 666666666666 8 2 22222 4 000 333333333333333333333 00 4 000 333 7 7 7 7 22 999999999 0 2222 0 00 44 00000000 222222222222222 2 0 8 0 88 4 2 0 0000000 4 0 0 8 44444 222 0 0 5 0000 0 555555555555 555 88 2 0 8 2 88 0 33 00 000 7 0 3 22222 7 55555 0 000 0 4444444444444 0 0 8 99 7 777 7 000000000 88
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-T--GCACATA-CATNCGATGAA-TTTT-N-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-T-G-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCT--AGGCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTA--TACCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACAC-ACG----CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
Reference ( family-4003 ) : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-T--GCACATA-CATNCGATGAA-TTTT-N-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-T-G-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCT--AGGCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTA--TACCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACAC-ACG----CAANATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTAA-A-TGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATG-----A-AC---TGATGTGGG-TGG-TTATATCAATTTCATCCTAGTCTT---ATGA--TATT-T---GCTGCAAAGTTCAGTGCATCAT-ATTG---ATTG-GAA-A-T-GAGTAAGGCCTAGAGGCTAATGTAT----AACGAAA-TGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAGGAGG-CTGTT----TTATGCAATTCATA-AACACAA----CATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCC-AATAATGTGTA-ACGTAGTGACAGTGCCCC-CCCCCCTT-----CCA------------ATTGTCTTAGGGCT-GTATTAA-CATGTATACAATGCTGTCTAGATGAAAATC--AGCTATT-CTATTTTGTTT-CCTGTGACAAAGATAGTTC--A-GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTT---GTGATCCATTGT---GC-----ATTGCAGTGCGCCGT-ATTG---ACTG-GAATA-TCGATCATAGCCT--AGGCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : t-TGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT----T-TCTTTTATTGTCATGATA------------TGGCGGATCAAA-----TTGAGGTTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATC--AAACATG-CCACTTTACTT-ACCATAACAGAAAAAc
gi|12 : C-TTATTACCTCCGAGAT-GGCTTAG-CATGCACAC-ACG----CACATTGAAAATC--AACCATG-ATAATTTACTT-ACTACGACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacaAATC--TACCATG-CAATTTTACTTAACTATCACAGAGAAACTtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAATTGAGCTGAGGAAA-CTG-------------ATTTATA-TACA-AA----C-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATG-----ATTC---TTCTTTGGA-T-
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACG-----A-AC---TTTCGTGGA-T-
gi|18 : catctgTTAATTTCATCCTGGTCTT---GTG---C-TC-C---CTTACACAATGCAGTGCGCCtata
gi|2 : gCTAAACATTAAGA-CAGAGA-AAATTCAAGT-C--A-ACACA-TATGC--------------------------AA---ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGAGAT--------------------------T-G-TCATCCCAATTT-----------T---GTGA---ATC-C----CTACATAGTGAAAT-TATC-C-AGTG---ATTA-GAA-AAT-GAGCATGG------------TGCTT----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATGA------TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTATGTAGTAAC------------------GAGA-CATCT----CTGTGCAA--CAGAGAATACAAACTTC-TCTA-------TCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTA--TACCCTGGTGATGAGAA-ACATGGTGACAGT--CTC-TTCCTCCTC
gi|3 : cctA-AAATTCTAGACT--GCACATT-CATCTGATAAAATTTT-T-A-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACA-----C-ATATATTACATG--------TAACTCAATTTCATCCAAGTCTTTTAATAA--CATT-T---GC-ACGA--TGCAATGCTTAAC-ACTGT--ATTG-GAA-A-T-TGGTAT-GCTT--AA--TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAAT---G--AAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAA----ttcagg
gi|4 : a----C-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAG-TTCAACTCCTGGGTA--TACCC-AGTAATGTA-ATGCATGGTAGCAGGACCCCACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAA-AATGCATGC--CA----CAAGATGAAAATC--AACCATG-CC-----ATTT-ACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTT-GGA-CGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACG-----A-AC---TTTCGTGGATT-A-TAATCGCAATTCTATCCCAGTTTT---AT----CATT-CCATGC-ACAAAGT--AATGCGTCAT-ATTG---ATTA-GAA-A-T-CAGTA-GGC------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-T--GC-------------------TTT-C-A-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGAATTTA-AC---TTACATTGATT-GCTTACCTCAATTTCATCCCAGTCTC---ATG----ATT------CTAT--------GTGCATTGTAATTGGCCATTGAGAA-A-T-GAAT
gi|7 : ctCCCATCCCC-TC--TGCGTTAGGATA-G-TTAAG-CATG---------------AAA--AAAATC--AACCATGCCCCCCTTACTT-ACTATAA-ACAGAAATTttaaag
gi|8 : taattatGATTGCGA-CAGAAA-AAAATCGAGAGT--ACACATAACATCAGATGGA-TTTT-C-ATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACG-----A-AC---TTTCGTGGA-T-gtgcttattttcatggtaagcataacatcgcatgatcatttatagtatcagcctggttatgggcttttgaatggactgcgagg
gi|9 : TGATC-TCTTTGGTTTAGGGTT-AGTTTAGCCATGT-CAC-ATG----CAATATGAGTATCAAAACCATG-CCAC---AC---AGAATGACAGAGAAATTTCAT---TA--ATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111111111 1111 111 333333333333333333333 111 333333333 2222 11 22222222 333333333333333 3333333 11111 111 1111 1 333333333333 11 1 11 11 333 1 1 3333333 111111 111 3333333333333 222222222 11
lowQualScore : 0 22 8 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 5 2 2 66 1 4 1 2 0 555555555555 2 0 8888 2 000 777777777777777777777 55 0 999 888 6 6 6 6 99 777777777 1 1111 8 11 22 88888888 111111111111111 3 7 3 1 44 1 8 1 2222222 1 8 1 3 88888 555 1 8 2 7777 0 000000000000 333 33 4 0 9 0 99 1 88 44 111 0 2 3 1111111 555555 6 000 8 7777777777777 1 1 0 77 5 666 5 000000000 33
lowQualScore : . .. . . ...................................................................................................... ... . . . .. . . . . . ............ . . .... . ... ..................... .. . ... ... . . . . .. ......... . .... . .. .. ........ ............... . . . . .. . . . ....... . . . . ..... ... . . . .... . ............ ... .. . . . . .. . .. .. ... . . . ....... ...... . ... . ............. . . . .. . ... . ......... ..
lowQualScore : 8 88 0 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 0 8 2 99 4 2 0 0 2 666666666666 8 2 2222 4 000 333333333333333333333 00 4 000 333 7 7 7 7 22 999999999 0 2222 0 00 44 00000000 222222222222222 2 0 8 0 88 4 2 0 0000000 4 0 0 8 44444 222 0 0 5 0000 0 555555555555 555 88 2 0 8 2 88 0 33 00 000 7 0 3 0000000 777777 0 000 0 4444444444444 0 4 8 99 7 777 7 000000000 88
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACACA----CG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
Reference ( family-4003 ) : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACACA----CG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTA-AATGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATG-----A-AC---TGATGTGGG-TGGTTATATCAATTTCATCCTAGTCTT---ATGA--TATT-T---GCTGCAAAGTTCAGTGCATCAT-ATTG---ATTG-GAA-A-T-GAGTAAGGCCTAGAGGCTAATGTAT----AACGAAA-TGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAGGAGG-CTGTT----TTATGCAATTCATA-AACACAA----CATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCC-AATAATGTGTA-ACGTAGTGACAGTGCCCC-CCCCCCTTC---------CA--------ATTGTCTTAGGGCT-GTATTAA-CATGTATACAATGCTGTCTAGATGAAAATC--AGCTATT-CTATTTTGTTT-CCTGTGACAAAGATAGTTC--A-GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTT---GTGATCCATTGT---GC-----ATTGCAGTGCGCCGT-ATTG---ACTG-GAATA-TCGATCATAGCCTAG--GCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : t-TGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT----T-TCTTTTATTGTCATGATA------------TGGCGGATCAAA-----TTGAGGTTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATC--AAACATG-CCACTTTACTT-ACCATAACAGAAAAAc
gi|12 : C-TTATTACCTCCGAGAT-GGCTTAG-CATGCACACA----CG-CACATTGAAAATC--AACCATG-ATAATTTACTT-ACTACGACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacaAATC--TACCATG-CAATTTTACTTAACTATCACAGAGAAACTtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAATTGAGCTGAGGAAA-CTG-------------ATTTATA-TACA-AA----C-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATG-----ATTC---TTCTTTGGA-T
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACG-----A-AC---TTTCGTGGA-T
gi|18 : catctgTTAATTTCATCCTGGTCTT---GTG---C-TC-C---CTTACACAATGCAGTGCGCCtata
gi|2 : gCTAAACATTAAGA-CAGAGA-AAATTCAAGT-CA---ACACA-TATGC-------------------------AA---ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGAGAT--------------------------TG-TCATCCCAATTT-----------T---GTGA---ATC-C----CTACATAGTGAAAT-TATC-C-AGTG---ATTA-GAA-AAT-GAGCATGG------------TGCTT----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATGA------TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTATGTAGTAAC------------------GAGA-CATCT----CTGTGCAA--CAGAGAATACAAACTTC-TCTA-------TCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTATA--CCCTGGTGATGAGAA-ACATGGTGACAGT--CTC-TTCCTCCTC
gi|3 : cctA-AAATTCTAGACTG--CACATT-CATCTGATAAAATTTTT-A-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACA-----C-ATATATTACATG-------TAACTCAATTTCATCCAAGTCTTTTAATAA--CATT-T---GC-ACGA--TGCAATGCTTAAC-ACTGT--ATTG-GAA-A-T-TGGTAT-GCTTAA----TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAAT---G--AAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAA----ttcagg
gi|4 : a----C-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAG-TTCAACTCCTGGGTATA--CCC-AGTAATGTA-ATGCATGGTAGCAGGACCCCACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAA-AATGCATGC-----CA-CAAGATGAAAATC--AACCATG-CC-----ATTT-ACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTTGGA-CGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACG-----A-AC---TTTCGTGGATTA-TAATCGCAATTCTATCCCAGTTTT---AT----CATT-CCATGC-ACAAAGT--AATGCGTCAT-ATTG---ATTA-GAA-A-T-CAGTA-GGC------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-TG--C-------------------TTTC-A-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGAATTTA-AC---TTACATTGATTGCTTACCTCAATTTCATCCCAGTCTC---ATG----ATT------CTAT--------GTGCATTGTAATTGGCCATTGAGAA-A-T-GAAT
gi|7 : ctCCCATCCCC-TC--TGCGTTAGGATA-G-TTAAG-CATG---------------AAA--AAAATC--AACCATGCCCCCCTTACTT-ACTATAA-ACAGAAATTttaaag
gi|8 : taattatGATTGCGA-CAGAAA-AAAATCGAGAGTA--CACATAACATCAGATGGA-TTTTC-ATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACG-----A-AC---TTTCGTGGA-Tgtgcttattttcatggtaagcataacatcgcatgatcatttatagtatcagcctggttatgggcttttgaatggactgcgagg
gi|9 : TGATC-TCTTTGGTTTAGGGTT-AGTTTAGCCATGT-CACA----TG-CAATATGAGTATCAAAACCATG-CCAC---AC---AGAATGACAGAGAAATTTCAT---TA--ATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 111111111111 1111 111 333333333333333333333 111 333333333 2222 11 22222222 333333333333333 3333333 11111 111 1111 1 333333333333 11 1 11 11 333 1 1 3333333 111111 111 3333333333333 222222222 11
lowQualScore : 0 22 8 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 5 2 2 66 1 4 1 2 0 555555555555 2 0 8888 2 000 777777777777777777777 55 0 999 888 6 6 6 6 99 777777777 1 1111 8 11 22 88888888 111111111111111 3 7 3 1 44 1 8 1 2222222 1 8 1 3 88888 555 1 8 2 7777 0 000000000000 333 33 4 0 9 0 99 1 88 44 111 0 2 3 1111111 555555 6 000 8 7777777777777 1 1 0 77 5 666 5 000000000 33
lowQualScore : . .. . . ...................................................................................................... ... . . . .. . . . . . ............ . . .... . ... ..................... .. . ... ... . . . . .. ......... . .... . .. .. ........ ............... . . . . .. . . . ....... . . . . ..... ... . . . .... . ............ ... .. . . . . .. . .. .. ... . . . ....... ...... . ... . ............. . . . .. . ... . ......... ..
lowQualScore : 8 88 0 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 0 8 2 99 4 2 0 0 2 666666666666 8 2 2222 4 000 333333333333333333333 00 4 000 333 7 7 7 7 22 999999999 0 2222 0 00 44 00000000 222222222222222 2 0 8 0 88 4 2 0 0000000 4 0 0 8 44444 222 0 0 5 0000 0 555555555555 555 88 2 0 8 2 88 0 33 00 000 7 0 3 0000000 777777 0 000 0 4444444444444 0 4 8 99 7 777 7 000000000 88
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACACA----CG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
Reference ( family-4003 ) : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACACA----CG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTA-AATGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATG-----A-AC---TGATGTGGG-TGGTTATATCAATTTCATCCTAGTCTT---ATGA--TATT-T---GCTGCAAAGTTCAGTGCATCAT-ATTG---ATTG-GAA-A-T-GAGTAAGGCCTAGAGGCTAATGTAT----AACGAAA-TGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAAT---ATTGAGGAGG-CTGTT----TTATGCAATTCATA-AACACAA----CATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCC-AATAATGTGTA-ACGTAGTGACAGTGCCCC-CCCCCCTTC---------CA--------ATTGTCTTAGGGCT-GTATTAA-CATGTATACAATGCTGTCTAGATGAAAATC--AGCTATT-CTATTTTGTTT-CCTGTGACAAAGATAGTTC--A-GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTT---GTGATCCATTGT---GC-----ATTGCAGTGCGCCGT-ATTG---ACTG-GAATA-TCGATCATAGCCTAG--GCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : t-TGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT----T-TCTTTTATTGTCATGATA------------TGGCGGATCAAA-----TTGAGGTTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATC--AAACATG-CCACTTTACTT-ACCATAACAGAAAAAc
gi|12 : C-TTATTACCTCCGAGAT-GGCTTAG-CATGCACACA----CG-CACATTGAAAATC--AACCATG-ATAATTTACTT-ACTACGACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacaAATC--TACCATG-CAATTTTACTTAACTATCACAGAGAAACTtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAATTGAGCTGAGGAAA-CTG-------------ATTTATA-TACA-AA----C-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATG-----ATTC---TTCTTTGGA-T
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACG-----A-AC---TTTCGTGGA-T
gi|18 : catctgTTAATTTCATCCTGGTCTT---GTG---C-TC-C---CTTACACAATGCAGTGCGCCtata
gi|2 : gCTAAACATTAAGA-CAGAGA-AAATTCAAGT-CA---ACACA-TATGC-------------------------AA---ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGAGAT--------------------------TG-TCATCCCAATTT-----------T---GTGA---ATC-C----CTACATAGTGAAAT-TATC-C-AGTG---ATTA-GAA-AAT-GAGCATGG------------TGCTT----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATGA------TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTATGTAGTAAC------------------GAGA-CATCT----CTGTGCAA--CAGAGAATACAAACTTC-TCTA-------TCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTATA--CCCTGGTGATGAGAA-ACATGGTGACAGT--CTC-TTCCTCCTC
gi|3 : cctA-AAATTCTAGACTG--CACATT-CATCTGATAAAATTTTT-A-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACA-----C-ATATATTACATG-------TAACTCAATTTCATCCAAGTCTTTTAATAA--CATT-T---GC-ACGA--TGCAATGCTTAAC-ACTGT--ATTG-GAA-A-T-TGGTAT-GCTTAA----TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAAT---G--AAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAA----ttcagg
gi|4 : a----C-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAG-TTCAACTCCTGGGTATA--CCC-AGTAATGTA-ATGCATGGTAGCAGGACCCCACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAA-AATGCATGC-----CA-CAAGATGAAAATC--AACCATG-CC-----ATTT-ACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTTGGA-CGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACG-----A-AC---TTTCGTGGATTA-TAATCGCAATTCTATCCCAGTTTT---AT----CATT-CCATGC-ACAAAGT--AATGCGTCAT-ATTG---ATTA-GAA-A-T-CAGTA-GGC------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-TG--C-------------------TTTC-A-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGAATTTA-AC---TTACATTGATTGCTTACCTCAATTTCATCCCAGTCTC---ATG----ATT------CTAT--------GTGCATTGTAATTGGCCATTGAGAA-A-T-GAAT
gi|7 : ctCCCATCCCC-TC--TGCGTTAGGATA-G-TTAAG-CATG---------------AAA--AAAATC--AACCATGCCCCCCTTACTT-ACTATAA-ACAGAAATTttaaag
gi|8 : taattatGATTGCGA-CAGAAA-AAAATCGAGAGTA--CACATAACATCAGATGGA-TTTTC-ATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACG-----A-AC---TTTCGTGGA-Tgtgcttattttcatggtaagcataacatcgcatgatcatttatagtatcagcctggttatgggcttttgaatggactgcgagg
gi|9 : TGATC-TCTTTGGTTTAGGGTT-AGTTTAGCCATGT-CACA----TG-CAATATGAGTATCAAAACCATG-CCAC---AC---AGAATGACAGAGAAATTTCAT---TA--ATG
blockSeqs : AA . G AGTACACATAACATCAGATGGATTTTCATCGTCGGAAAAACCCAAACTACCATAATACTTAACGATGTCTTTTTAAATCTGTCCT TTA G T C GT C C C G AATTTAAC C TTGC T TTA CATTCCATGCACAAAG GC GTA GCC A T A C TA TTAAT T ATAA A AC TA AAAAGTCT AATGTAATGGTCTG A T G T CA G G A TTGAGCT T T C T CTAAC CTG C G C ACTT . GGCTTTTCCA TTT AA A T T AT T . TG AA A A ACCCCCA TGATTA A AGT C CACACACG A A AA C ACT A TCATACT TT
blockSeqs : AG . . ACTGCACATTCATCTGATAAAATTTTTATGTGAAGTAAAAATTCCTAATTAACCAAATTTACCTGC CA . T T . G T T T CATATA T TTA T . ATCCATTGTGCAT GC GT T . . . . TG GC G . . . TG GGA GCATGGCGTT A C T T TA A G T TT A . T C T TTT T . C . . GTTTCAACG CAA . T . T T A . A AT . . TCCCC A GG . CATGCCA A G . . AAT . ATATAA .
blockSeqs : GG . . TCAACACATATGCAAACATTCCCTAACTCCTTACAAATGTTCT TG . G G . C T G T ATTC A TG A . CTCCCTTACACAA GA AC . . . . . T . T . . . GT AA T . . C T AT A T T TG G . A T C C G . . . . TCA ACA . A . . G A TGATC T AG . TCACATG A A . . ATT . TTTCAT .
blockSeqs : GC . . TATACATAAATGAATTTTGGACGTTAATATAGCTCATC CA . T T . G T T T AAC T . C . AATCCCTACATAG GC AT . . . . . G . . AA GA . . . G . . . A . A . . C A . . . G . . . T . . CCC .
blockSeqs : . CTGCTTTCATGTTCCTATAATCCTAAGGATCATAATT TG . G T . T T T C AAC A C . ACATTTGCACGA . C . . . . . . . AC .
blockSeqs : G . C C . C C G T AAC T . . ATTCTAT . . . . .
blockSeqs : . . . . . . . G . . .
blockSeqCons : TG** ATTCCTTGCGCAA******** T****** CCGCCG*******
originalCons : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGA-TG-TTATCTCAATTTCATCCTAGTCTT---GTGA--CATT-C---GCTACAAAGTGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT---GTTGAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCACACA----CG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
finalCons : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACG-----A-AC---TTNCGTGGATG--TTATCTCAATTTCATCCTAGTCTT---GTGATTCCTTGCGCAA--------TGCAGTGCGTCGT-ATTG---ATTG-GAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAAT------GAGGAGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCCGCCG-------CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11111111111 111 1111111 1 333333333 2222 11 22222222 333333333333333 44444444 11111 11111 111 1111 1 333333333333 11 1 11 11 333 1 1 3333333 111111 111 66666666666666 222222222 11
lowQualScore : 0 22 8 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 5 2 2 66 1 4 1 2 0 88888888888 2 0 5 999 2 0 3333333 5 888 0 4 6 1 6 6 6 99 777777777 1 1111 8 11 22 88888888 111111111111111 3 7 3 1 44 1 8 1 00000000 00000 1 3 88888 555 1 8 2 7777 0 000000000000 333 33 4 0 9 0 99 1 88 44 111 0 2 3 1111111 555555 6 000 8 66666666666666 1 1 0 77 5 666 5 000000000 33
lowQualScore : . .. . . ...................................................................................................... ... . . . .. . . . . . ........... . . . ... . . ....... . ... . . . . . . . .. ......... . .... . .. .. ........ ............... . . . . .. . . . ........ ..... . . ..... ... . . . .... . ............ ... .. . . . . .. . .. .. ... . . . ....... ...... . ... . .............. . . . .. . ... . ......... ..
lowQualScore : 8 88 0 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 0 8 2 99 4 2 0 0 2 66666666666 8 2 0 222 4 4 3333333 7 444 7 7 7 7 7 7 7 22 999999999 0 2222 0 00 44 00000000 222222222222222 2 0 8 0 88 4 2 0 88888888 66666 0 8 44444 222 0 0 5 0000 0 555555555555 555 88 2 0 8 2 88 0 33 00 000 7 0 3 0000000 777777 0 000 0 88888888888888 0 4 8 99 7 777 7 000000000 88
consensus : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACGA-A-----C---TTNCGTGGA-T-G-TTATCTCAATTTCATCCTAGTCTTGTGAT-TCC--TTGC-GCAA--TGCAGTGCGCCATATTG-ATTGGAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAA-T------GAGG-AGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGCA-----CGCACG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
Reference ( family-4003 ) : CTAAAGATTGGGA-CAGAGA-AAATTCGAGN-TG--CACATA-CATNCGATGAA-TTTTN-A-CGTC--AAG-AA---AAATT-C-CATAA-------------CTC--TA----TCA-AAT--GT-CCT--TTTTTC-GATCTTGCAA-AGTNACATCTTG--TTGACCCGANATTACGA-A-----C---TTNCGTGGA-T-G-TTATCTCAATTTCATCCTAGTCTTGTGAT-TCC--TTGC-GCAA--TGCAGTGCGTCGTATTG-ATTGGAA-A-T-GAGTATGGCCTAG--GCTAATGTNT----AACGAAA-TGT--AATATCGATCATAGCCNGGGCAAGACGAA-----TAAATGTG-ATGTCGTGGTCT-TGTTTTGACGTCATAATATAAATNATGNAGTGGCGGATCTAA-T------GAGG-AGA-CNGTT----CTGTGCAACTCANA-AACACAA----C-TCTGG--T-TTTCACGCATCTNAAAATAGC--AACCGCTCA-CATCAAGTTTCCAGTTTCANCTCCTTGGTATA--CCC-GGTAATGTG-A-ACGTGGTGACAGTGCCCC-CCCCCCCTCACCCCCACCCATGATC-TCATTGCCTTAGGGTT-GNTTTAG-CATGC------CGC-CG-CAAGATGAAAATC--AACCATG-CCACTTTACTT-ACTATGACAGAGAAANTTCATA-NTA--ATGGCTATGAAAATA
gi|1 : CTAAAGATTTAGAGCAGAGA-AAATTCAAGT-TTACCATATA-CATGCAATGAT-TTTTA-AATGTC--AAGTAA---AAACT-CGCATAA-------------TTC--TA----TCA-ACT--GT-CCT--TTTTTT-AATCTTGCAA-AGTGACCTCTTA--TTGACCAGAGATTATGA-A-----C---TGATGTGGG-T-GGTTATATCAATTTCATCCTAGTCTTATGATAT----TTGCTGCAAAGTTCAGTGCATCATATTG-ATTGGAA-A-T-GAGTAAGGCCTAGAGGCTAATGTAT----AACGAAA-TGT--AATATCTATCATATCCAGGACAAGAC-AA-----TAAATGTG-ATGTTGTGGTCT-TGTTTTGACGTCATAAAATAAATGAAGAAGTGTTAGATCTAA-TATT---GAGG-AGG-CTGTT----TTATGCAATTCATA-AACACAA----CATATAG--TGTTTC-CACACCTAGAAATAGC--AACCGCTCA-CAACAAGTTTCCAGTTTCACCTCCTTGGTGTTTTCCC-AATAATGTGTA-ACGTAGTGACAGTGCCCC-CCCCCCTTC---------CA--------ATTGTCTTAGGGCT-GTATTAA-CATGTATACAATGC-TGTCTAGATGAAAATC--AGCTATT-CTATTTTGTTT-CCTGTGACAAAGATAGTTC--A-GTA--ATGGCCATGAAAGTA
gi|10 : AATTCCATCCTAGTTTTGTGAT-CCA--TTGT-GCAT--TGCAGTGCGCCGTATTG-ACTGGAATA-TCGATCATAGCCTAG--GCaaattattttaccaaaaccaagctttgatggttcctgtatgacatgactcagtttgatt
gi|10 : t-TGG--AATATCGATCATAGCCTAGGCAAGAC-AA-----TAGATAGGCATGGCGT----T-TCTTTTATTGTCATGATA------------TGGCGGATCAAATT------GAGG-TTG-CCGTT----TTGTGCAACTGACA-Aaagacaatagataggcatggcgtttcttttattgtcatgatatggcggatcaaattgaggttgccgttttgtgcaactgacaac
gi|11 : taattccatcctagttttgtgatccattgtgcattgcagtgcgccgtattgacAAATC--AAACATG-CCACTTTACTT-ACCATAACAGAAAAAc
gi|12 : C-TTATTACCTCCGAGAT-GGCTTAG-CATGCA-----CACACG-CACATTGAAAATC--AACCATG-ATAATTTACTT-ACTACGACAAACAAAAT--ATA-ATATTATGACTATGGAAATAtggtacttggattcaattgaaagatgcaattgtaagttctacatcaaatgatcataaatcagcttgattaaaaaattatttcgaatggatttca
gi|13 : cactccattttacaAATC--TACCATG-CAATTTTACTTAACTATCACAGAGAAACTtgtaattgc
gi|15 : ATGATGCAATGACGGATCTAA-TTGAGCTGAGG-AAA-CTG-------------ATTTATA-TACA-AA----C-TCTGG--T-TTCAACGCATCTTTAAATAGCAAAACCACTCA-CA-CAAGTTTTAAATTTCATCCCCTgacttaatgtaactgtaaatttggcaataaatgtcaataaagatcagcttgattgattttaggcttctggttggatctcaatg
gi|16 : ----TTA-AAT---T-TTT--TTTTTC-AATCTTGCAA-AGTTTCATTTTG--TTGACCCAACATGATGATT-----C---TTCTTTGGA-T-
gi|17 : ttTTTT-GATCTTGGAAGAGTTATATCTTGGTTTGAGCTGATATTACGA-A-----C---TTTCGTGGA-T-
gi|18 : catctgTTAATTTCATCCTGGTCTTGTGCT-CCC--TTAC-ACAA--TGCAGTGCGCCtata
gi|2 : gCTAAACATTAAGA-CAGAGA-AAATTCAAGT-CA---ACACA-TATGC-------------------------AA---ACATT-C-CCTAA-------------CTCCTTA-----CA-AAT--GT-TCT--CT-----GATCTTTCAA-AGAGAGATCTTT--TTGACCTGAGAT--------------------------T-G-TCATCCCAATTT-----------TGTGAA-TCC--CTAC-ATAG--TGAAAT-TATC-CAGTG-ATTAGAA-AAT-GAGCATGG------------TGCTT----AACAAAAATGT--AAAATCAATCACAGCCTGGGCAAGATGA------TACATGTA-ATGTAATGGTCTGTGATTTGATGTCACAATATAAATTATGTAGTAAC-------------------G-AGA-CATCT----CTGTGCAA--CAGAGAATACAAACTTC-TCTA-------TCA--CATCCAACAATAGC--AACATCTCATCTTCTGATTCCCA-TTTCAACTCTTTAGTATA--CCCTGGTGATGAGAA-ACATGGTGACAGT--CTC-TTCCTCCTC
gi|3 : cctA-AAATTCTAGACTG--CACATT-CATCTGATAAAATTTTT-A-TGTG--AAGTAA---AAATT-C-C-TAA-------------TTA---A----CCA-AAT--TTACCTGCCTTTTC-AATC-------------ATCTCG--TT------ATCTTACAC-A-----TATATTACATG--------TAACTCAATTTCATCCAAGTCTTTTAAT-AACATTTGC-ACGA--TGCAATGCTTAACACTGTATTGGAA-A-T-TGGTAT-GCTTAA----TAATGTGTATAAAACAAAA-TGTACAATATTGATCATGGATGTGGCAAGACAAAAGTCTTAAAAGT-------------T-TGTTTTGACACC-TAATACAAATCATGATGTGGCTGATCTAA-T------GAAATAAATCAGTTCTAACTGTGCAAC---AA-AACACAA----ttcagg
gi|4 : a----C-TCTGGGCT-TTTC-CACATCACAAAATAGT--AACCATTCA-CATCAAGTTTCTAG-TTCAACTCCTGGGTATA--CCC-AGTAATGTA-ATGCATGGTAGCAGGACCCCACCCACCCTCACCCCCACCCATGATTATCATTGCCTTAGGATTAGTTTTAA-AATGCA-----TGC-CA-CAAGATGAAAATC--AACCATG-CC-----ATTT-ACTATGACAGAGAAA--TCATACTTA--CCGGCTATGAAAATA
gi|5 : aaacATTAGGA-TAAAGGGAAATTCGGGT--------ATA-CATA-AATGAA-TTTTGGA-CGTT--AA---------------TATAG-------------CTC---A----TC----------------TTTTT-GATCTTGGAA-AGTTATATCTTG--TTGAGCTGATATTACGA-A-----C---TTTCGTGGATT-A-TAATCGCAATTCTATCCCAGTTTTATCAT-TCC--ATGC-ACAA--AGTAATGCGTCATATTG-ATTAGAA-A-T-CAGTA-GGC------GC-AATCTTT----AGCGAAA-TGT--AATATTGATCATAGCCAAGGCCAAACGGA-----ACAATGTtataactgcaagtttgacatctaatagtcatagtcgagtttgattaattttaggcttttgaaatggatttcaatg
gi|6 : CTAAAGA--GGGA-CAGAGA-AAATTCGAGC-TG--C-------------------TTTC-A-TGT---------------TC-C-TATAA-------------TCC--TAAGGATCATAAT-------T--TTTTT---ATCTTGCAA-AGTGATATCTCA--TTGATCTTAGATCAGGA-ATTTAAC---TTACATTGA-TTGCTTACCTCAATTTCATCCCAGTCTCATGAT-TCT--ATGT-GCAT--TGTAATTGGCC--ATTG-A---GAA-A-T-GAAT
gi|7 : ctCCCATCCCC-TC--TGCGTTAGGATA-G-TTAAG-CATG----------------AAA--AAAATC--AACCATGCCCCCCTTACTT-ACTATAA-ACAGAAATTttaaag
gi|8 : taattatGATTGCGA-CAGAAA-AAAATCGAGAGTA--CACATAACATCAGATGGA-TTTTC-ATCGTCGGAAA-AACCCAAACTAC-CATAATACTTAACGATGTCTT--T-----TTA-AATCTGT-CCT--TTTTTTTAATCTCGCAA-AGTCACATCTTG--TTGACACGAGATTACGA-A-----C---TTTCGTGGA-T-gtgcttattttcatggtaagcataacatcgcatgatcatttatagtatcagcctggttatgggcttttgaatggactgcgagg
gi|9 : TGATC-TCTTTGGTTTAGGGTT-AGTTTAGCCATGT------CACATG-CAATATGAGTATCAAAACCATG-CCAC---AC---AGAATGACAGAGAAATTTCAT---TA--ATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AACATCAAATGGTCACGACCAGCTTGATTAGTTCTAGATTGTTGAATGGATCTCAGTATCTCATTATCAAATAAGAGAAGGAGAAGGGGGGGTCACTTGAATCAACATTTATTA