lowQualScore : 2222 7777777777777777777777777 2 1 33333333333333333333333333 1 1 1 2222 1 1 1 22222 11 1 111 1 2222222222 1 1111 4444444444 11 11 111 1111 111111111111 11111 1 1 1111 1111111 1 11 1 111 2222 2222 111 1 6666666666666 1 1 6666666666666666666 111 22222 111111111 1 1 11 1 1 555555 444444444444444444444 1 11 6666666 2 2 7777777777 3333 22 1 222 22 11 222 4444444 1 3333333 111 88888888888888888888888
lowQualScore : 888 2 8888 5555555555555555555555555 0 5 11111111111111111111111111 3 3 6 3 8888 3 3 3 77777 8 8 0 11 0 6 111 0 8 8888888888 5 8 9999 0 1111111111 0 11 8 8 11 444 8 8 8 999 4444 88 888888888888 77777 77 77 5 1 6 77 2222 5 77 5555555 66 5 66 66 5 5 0 5 66 0 5 5 5 0 11 2 5 000 9999 5 5 9999 99 111 3 0 5555555555555 4 0 0 3333333333333333333 777 3 3 7 55555 3 999999999 3 0 5 66 0 0 555555 555555555555555555555 0 33 0000000 4 7 0 0000000000 3333 77 5 666 77 7 6 88 555 1111111 6 3 7 2222222 000 55555555555555555555555
lowQualScore : ... . .... ......................... . . .......................... . . . . .... . . . ..... . . . .. . . ... . . .......... . . .... . .......... . .. . . .. ... . . . ... .... .. ............ ..... .. .. . . . .. .... . .. ....... .. . .. .. . . . . .. . . . . . .. . . ... .... . . .... .. ... . . ............. . . . ................... ... . . . ..... . ......... . . . .. . . ...... ..................... . .. ....... . . . .......... .... .. . ... .. . . .. ... ....... . . . ....... ... .......................
lowQualScore : 000 5 5555 0000000000000000000000000 0 0 00000000000000000000000000 3 3 7 3 3333 3 3 3 00000 0 0 8 00 8 0 888 0 0 8888888888 0 0 8888 8 2222222222 8 00 0 0 00 000 0 0 0 000 0000 88 888888888888 88888 99 99 7 4 9 99 1111 7 99 1111111 99 0 99 99 0 0 0 0 99 4 0 7 7 0 88 5 7 000 3333 7 7 3333 22 777 0 0 0000000000000 5 0 0 2222222222222222222 555 2 2 0 00000 2 555555555 0 0 5 55 0 0 555555 000000000000000000000 0 88 5555555 0 5 0 5555555555 5555 55 5 000 55 3 0 33 777 7777777 7 3 3 3333333 000 33333333333333333333333
consensus : TATTTNNNTCTATACNCCCAGGCAAGCATTCTTCTCATNTTTGCNNTCACATGCATACATTCGCGTTAGCGGCTAGTAGGGTCAATGGTTCTAATGACTACA-TTCG-GTTAGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGTTGTC-C-T--TTTACC----AGGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-TAT-GAC--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAA-CCTGGC---TGCAT-TGT-TGCGC-TTCTA---GTCCATATTGGC--AGC---ATTNACTTGCG-CTA------------TATTTGCACCTGC-TTGGG-ACTGCC-AGGCTGATGT---TTTATTTTTG---TTTTTTGTTCAGTAC-----ATGTTTG--A--TTATTTTTTCG-CACTATTCTCAATTTTTG-C-CATA-TTCATCCTA--AGCTTATTTT---AACAC--CCCCCG-AC-CCCC--TCCCCCACCCCANAAAANAAGACTGGGGGTGGGGGGGTGTTTA-ATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCTTCCAATGGCCATTTTCCACAACTCGTACCTATTAATAAATAATAT--AGTAAA-A-ATGTTTT--C---TACTGTAACA-TTACCC-A-TTA-TTAGACTACATGTACTTCTG--TTTTAT---TATCTGAGGGGTTTTTTG
Reference ( gi|2 ) : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGT-ACATGC-TACATTCG-GTTAGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNTACA-TTCA-GTTAGC-GGCT----AG-TAGGG-TCAA-TGGT-CTATTGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----AGGT-CAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-TATTGAC--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAA-CCTGGC---TGCAC-T-T-TGCGC-TTCT----GTCCATATTGGC--AGC---ATTTACTTGCG-CT-------------TATTTGCACTTGC-TTGGG-ACTGCCAAGGCTGATGTTTATTTATTTTTA---TTTTTTGTTCAGTAC-----ATGTTTG--A--TTATTTTTTCG-CACTATTCTCAATTTTTG-C-CATA-TTCAT--TA--AGCTTATTTT---AACA---CCCCCAAAC-CCCC--TCCCCC------AAAAAAAAACCTGGGGG-GGGG------TTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATGT--AGTAAA-A-ATGTTTTA-C---TACTGTAACA-TTACCC-A-TTACTTAGACTACATGTACTTCTGGTTTTTAT---TATTT------TTTTTTGGG
gi|5 : TATTTTCATCTATACCCCCAGGCAAGCATT-------TCTTTG-TTT-A-ATGCATACATTCGCGTTAGCGGCTAGTAGGGTCAATGGTTCTAATGACTTCAGTTCA-G
gi|1 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgTTTGACTCTATACACC-A--CAAGCATTCTTCTCATGTTTACAGTCACATGCATACATTCA-GTTA-CGGaatagtgcgcatcctcgctgttcatgatctgcatcgatcaagctgtccttttacaggtacaatgttccccccaactgccacaacatccgcccaacagggaaagtttgggcatgctgcgctatgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttcagtccataccggcagcactgactacctctaagtttgttg
gi|1 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatatTACA-TTCA-GTTA-C-GGCTGAAAAG-CTAGG-TCAAATGGT-CTAATGACTTCCAGTTCAGCAATAGAATGCGCAATCCCGTCGCTGGT-CATGATCTGCCA-------TGTCGATCAA-TTGTC-C-T--TT-AC-----AGGTACA----T-CCC-C--CCGTGAACT-GC-ACA-AACTATC--G-GCC-AACAGGGAAACAAGTATG----TGAGCT-A--TGCAGC---G-CGCATAATGA---TAGTTAT----GG-G--T--ATA----G--T-G--TTAG-C--CCAAACCGG--ACTG-CTATTTGTTA-CAT-CTTCTA-TC-C-TAC-CGGCA-CA-CTGA--TGCAACTTATTTATGCTTGCTTA-TCTGTCAGCCAAAACCCTGGCCCTTGCAT-T-TCTGCGCTTTCT----GTCCATATT--C--AGCCAGATTTA--TGCGCCT-------------TAATTGCACCTTCTTTGGG-AC-GCC-AGGCTGAT-T---TTTATTTTAG---TTTTTTGTTC-GTAC-----ATA-TTG--ACTTTTTTTTTCCG-CACTATTCTCAATTTAC--C-CATATTTCATACTAGGAGCTTCTTCTTCAAACACGCCCCTCGCACTCCCC--TCCCCC------CAAAATAAG-CTGGGGA-GGGG------ctgaaaagctaggtcaaatggtctaatgacttccagttcagcaatagaatgcgcaatcccgtcgctggtcatgatctgccatgtcgatcaattgtcctttacaggtacatccccccgtgaactgcacaaactatcggccaacagggaaacaagtatgtgagctatgcagcgcgcataatgatagttatgggtatagtgttagcccaaaccggactgctatttgttacatcttctatcctaccggcacactgatgcaacttatttatgcttgcttatctgtcagccaaaaccctggcccttgcatttctgcgctttctgtccatattcagccagatttatgcgccttaattgcaccttctttgggacgccaggctgatttttattttagttttttgttcgtacatattgactttttttttccgcactattctcaatttacccatatttcatactaggagcttcttcttcaaacacgcccctcgcactcccctccccccaaaataagctggggagggggggg
gi|5 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatattttgactctatacaccacaagcattcttctcatgtttacagtcacatgcaTACA-TTCGCGTTAGC-GGCT----AG-TAGGG-TCAA-TGGTTCTAATGACTTC-AGTTCAG-AATAG--TGCGCA--TCC-TCGCTG-TTCATGATCTGC-A-------T--CGATCAAGCTGTC-C-T--TTTAC-----AGGTACAATGTT-CCC-C--CC---AACT-GCCACA-A-C-ATC--C-GCCCAACAGGGAAA-----GTT----TGGGC--A--TG---C--TG-CGC-TAT-GAC--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTC-AGTC-CATAC-CGGCAGCA-CTGACTgggg
gi|4 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgtattttcatctatacccccaggcaagcatttctttgtttaatgcaTAGCAGGCT----AAATAGGTCTCAA-TGGC---AATGACTTC-AGTTCAG-AATAG--TGCGCAATCCCTTCGCTG-T-CTT--CCTGC-AATTGGTGT-CTGATCAA-TTGTC-CGTGGTTTACCCTGGAAGTACAAT--T-CCCACCACC---AAATAGC-ACACA-AAATCCTC-GCC-AACAGGGAAA-----GTTGAGCTGAGCCTA--TG--GCTTTGCCGCTTAGTGACGATACCTATACTCGGCGGTC--ACATTACGGTTTGTCTCAG-CCTCAAAA-CTGTTGCTGCC-ATT-GTTA-CAACTTTCAAGTCACATACACGGCAGCA-CTGACTTACacctctaagtttgttg
gi|14 : acacaatttagttagcaaactatatattccaaagattaagaggtttattgccaatcgtttggtaataagcagtacaattaccgtggtctgctacttgctgtagtaatggctctaataatcggatcgactgcatatttatcccgatgatgggaaccaaagttatactctcttttttgctttgtgcacaccgaaaaaatccaccttgcaaaacaaagaaatgggcctgctccccatttggtcatggatcagcaactcggtctgtcctatagttcaagcaagaggcattcacaggcattcggaaattgtgacagacgccttttttcaagaatctatgcacagtgtataggaccaccaggagcagaagacaattctatgtagtttatttcaagatacaatgaacataacgattgcggtgTGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCT----CATGATCTGC-A-------T-TCGATCAACTTGTC-C----TTTACA----AGGTACAAT--T--CC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC--NNNNNNNNN-----NNN----NNNNNN-N--NN--NN--NN-NNN-NNNNNNN--NNNNNNN----NN-NNNN--NNN----N--NNN--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGCCAGCA-CTGACTTACctctaagttttgttga
gi|3 : CTTC-AGTTCAG-AAT-G--TGCGCAATCCC-TCGCTG-T-CAT-ATCTGA-A-------T-TCGATCAAGCTGTCGC-T--TTTACC----AGGTACAAT--TTCCC-C--CC---ACCT-GC-ACA-A-CTATC--CCGCC-AACAGGGAAA-----GTT----TGGGCC-CCTTG--GC--TG-CGC-TATGAAC--TAGTTAT----GG-GGTCCAGTA----G--TTG--TCAGGC--CAAAACCTG--GCTG-C-ATTTGTTAACAA-CTTCTAGTC-CATAC-TGGCAGCAGCTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAG-CAAAA-CCTGGC---TGCACTT-T-TGCGC-TTCT----GTCCATATTGGCTAAGC---ATTTACTTGCG-CTA------------AATTTGCACTTGC-TTGGGAACTGCC-AGGCTGATG-----TTATTTTTA---TTTTTTGTTCAG--C-----CTGTTTG--A--TT-TTTTTTCGCCACTATTCTTAA-TTTTG-C-CATA-TTCATC-TA--AGCTTATTTTA--AACAC--CCCCCAAAC-CCCCTTTCCCCCACCCCAAAAAAAAAAACTGGGGGTGGGGGGGTGTTTA-ATACATTTCActctaagttttgttg
gi|20 : CAGGGAGA-----TTT----TTGGCC-G--GG--GC--TG-CGC-TAT-GAC--TACTTGT----GG-GGTC--ATA----T--ATT--TCAA-C--CAAAACCTG--GCTG-C-ATT-GCCA-TT--CTACTAGTC-CATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccaacacatgctcaatgcattttccacactcgtacttattaaataatatagtaaacatgttttaactactgtagcaattaccccattgttaagactacatgtacttctgttttaatccgtggttttttt
gi|11 : --GC--TG-CGT-TAT-GAC--TAGTTAA----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-TTTA-CG--CTTCTAGTC-CATAT-TGACAGCA-TTGACTTGCG-CTTATTTATGCTTGCTTATGTTCTCAGCCAAAA-CCTGGC---TACAT-TGT-TACGC-ATCTA---GCCCATTTTGGC--AGC---ATTGACTCGCG-CTATTTGTGCTTCCTTATATGCATGTGT-TTGGG-ACT-----GGTTG-----------TTTTTG---TTTT---TTCAGTACTTGTTATGTTTGAAA--TGATTGTTTCA-CACTACTCTCAA-TTTTG-CTCATT-TTCATCCT---AGCTTAT-------------CCCCC---C-CCCC--tttatgtgtgcatgcttattta
gi|12 : --TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-TGGCAGCA-TTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAA-CCTGGC---TGCAC-TGT-TACGC-TTCTA---GTCCATATTGGC--AGC---ATTTACTTGCG-CT-------------TATTTGCACCTGC-TTGGG-ACT-----GGCTGATGTTTATTTATTTTTATATTTTTTTGTTCAGCAC-----ATGTTTG--A--TTA---TTTCG-CACTATTCTCAATTTTTACC-CATA-TTCATC-TA--AGCTTATTTT---AACA---TCC-----C-CCCC--TCCcgtaaa
gi|20 : TATATT-TCAACCAAAA-CCTGGC---TGCA----T-TGCCA-TTCTACTAGTCCATTTTg
gi|5 : cagggagatttttggccggggctgcgctatgactacttgtggggtcaTTGTCAGCCAAAA-CCTGGC---TGCAT-TGT-TACAC-TTCA----GTCCATACCGGC--AGC---ACTGACTatgtgtgcatgcttattta
gi|14 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgtattttcatctatacccccaggcaagcatttctttgtttaatgcatacattcgcgttagcggctagtagggtcaatggttctaatgacttcagttcagaatagtgcgcatcctcgctgttcatgatctgcatcgatcaagctgtccttttacaggtacaatgttccccccaactgccacaacatccgcccaacagggaaagtttgggcatgctgcgctatgactagttatggggtcatagTCAGCCAAAA-CCTGGC---TGCAT-TGT-TACAC-TTCTA---GTCCATACCGCC--AGC---ACTGACTTACacctctaagtttgttg
gi|3 : tgacttcagttcagaatagtgcgcaatccctcgctcatgatctgcattcgatcaacttgtcctttacaaggtacaattcccccaactgcacaactatccgccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCAACACATGC-T--CAATG--CATTTTCCACA-CTCGTACTTATTAA--A-TAATAT--AGTAAA-C-ATGTTTTAAC---TACTGTAGCAATTACCCCA-TTGTTAAGACTACATGTACTTCT-GTTTTAATCCGTGGTT------TTTTTctctaagttttgttg
gi|19 : cttcagttcagaatgtgcgcaatccctcgctgtcatatctgaattcgatcaagctgtcgcttttaccaggtacaatttccccccacctgcacaactatcccgccaacagggaaagtttgggccccttggctgcgctatgaactagttatggggtccagtagttgtcaggccaaaacctggctgcatttgttaacaacttctagtccatactggcagcagctgacttgcacttatttatgcttgcttattttgtcagcaaaacctggctgcacttttgcgcttctgtccatattggctaagcatttacttgcgctaaatttgcacttgcttgggaactgccaggctgatgttatttttattttttgttcagcctgtttgattttttttcgccactattcttaattttgccatattcatctaagcttattttaaacaccccccaaaccccctttcccccaccccaaaaaaaaaaactgggggtgggggggtgtttaatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaCAACACATGCCTTCCAATAGCCATTTTCCACAACTC-T-CCTATTAATAAATAATATCAGGTAAC-ACATGTATTT-CAGATACT-TAACA-TTACCT-AATTA-TTAGACTACATGTATTCATG--TTCTAT---TAT
gi|21 : cgATAATAT--AGTAAACA-ATCTTT---C---TATTGTAACA-T--CCC-A-TGA-TTAGACTACTTG---TTCTG---TTTA-----ATCTGAGGGGTTTTTTGccgagtgtggtttttgg
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TGTTAATTATATGTAGCATTCACTTTCTCTACATCGAGTAGAGTTATTTATGCACTTCCAATTAACTCGATGGTTGATATTCTTTTTTGATTGACGGATTCCGATTCTCATTAGGACCTACAAGGAGTCAGTCATGCATGTCCATCAAACTCGTACGTTGCCACTCCGTTTTACTTTAGTTCTTTTTACAATTACCCCCCCCCCTCCATTACAAACTTGCAATATTGTGTTTGTCAAGTTGGCATCGATAATATATATTTTATGTATTATTTCGCAATTGCTTTCATTATGCCCCCACTATGATAACGAGCTAAGGCACAATGTAGCAACATTACAAATTAAGATGCCAAATGGTGAGTACACTACTTGGTCGCTGCTTATTAATAACCCGGCTCAAATTTATCCCTATGATGGGACTAGAGTACTTGTCTTTCAAGCAACCTACCAAGTCACCAG
Unaligned ( gi|7 ): AGAGGTAAAGACGTGGAATTTTAGCATCTTTGAAATTTTATTTTTCTATGTTAAATGCCAACGTGCTCTATGAATCACTGTAGCATTCAATTCTCCCACATCGAGTTATAGTTATTATACGTTCTATTTAGCTCGATGGTTTGACATTCTTTTGATTTTTACGGATTTTGATTTCCATTACAATGTATGTCTTGCCTTGTGAGCATGTCTATCAAACTCGTATTGCTAATGATTTACATTAGGTTCTTTTTACAATTATCCCCCGTTACAAATGCAATTATTGTATATGTAAGACAAGTTGTAATCTATATTATATATGTTTTATGTATAGAATCTGGTAATGCTTTGAATGTTGTCCTCAGCTATAATAGAAGGAGCTAGGGCACACTATAGCAAACAATATCAAAATTAAGTT
Unaligned ( gi|8 ): CAGAGGTAAGGACGTGGAAATTTAGCATCTTTGAATTTTTGATTTTCTATGTTAAATGCCACCGAGCTCTGTGAATTATTATATAGCATTCAATTCTCCTATATCGAAATTTAGTTATTATACGTTTCATTTAGCTCTATGGTTTGACATTCTTTGATTTTTACGGATTTTGATTTTCCATTACAATGTAAGCCATGTCTTGTGAGCATGTCCATCAAACTCGAAATGCTTAAGCTTTACTTTAGGTTCTTTTTACAATTATCCCCCATTACAAATGCAATCATTGTGTTTGTGAAGTTGCATATTATGTATATAATTTTGTAATGCTTTGAATGTTGTTTCCAGCTATGATAACGAGCTAGGGCACAACGC
Unaligned ( gi|9 ): AGGTAAAGTAACGTGGAAATTTAGCAGTCTTGAATTTTGATTTTTATGTTAAATGCACGAGCTCTGTGAATTATTATATAGCATTCAATTCTACCTATATCGATTTAGCTTATTAACGTTTTCATTTAAGCTCTATGGTTTGACATTCTTTTTGATTTTTAACGGATTTGGATTTTCCATTACATGTAAGCATTGTCTTGTGAGCATGTCCATCAAACTCGAAAATTGCTTAAGCTTTACTTTAGGTTCTTTTTAAAATTATCCCCATTACAAATCAATCATTGTGTTTGTTGAAGTGCAATTTATGTATATAATTTTTGTAATGCTTTGAATGTTTGTTTCCAGCTATGATAAGAGCTAGGGCACAAGC
Unaligned ( gi|10 ): CAGAGGTAAGGAACGATTGAATCAGCATCTTTGAATCTTATTTTTTCTATTTTAAACTACCAGTTCGAGCTTGTTAATTATTGTATGCATTCCATCCTCACTATCTGAATTATAGTTATTATCATTCCATTGTAGCTTCGATGGGTGTGGTTTTTTTTTGAATTATTTCTTGAATTTTACGGATTTTGATTTCCATTAGGTTCCCTATAGTGTCTCCATGCCTTATGAAACATTGTCATCAATACTCGTAAGTGCCATCAAGTTTTACTTTAGGTTCTTTTTCCCAATTACCCCCCCCCATTAAAAAACGCAATTATTGTGTTTGTAAGTTGCGAATCGAAAACAATAGAATATATATT
Unaligned ( gi|13 ): AGAGGTAAGGACGTGGAAATTTGGCGTCTTTGAATTTTTATTATTCTCTGTGAATTGGGTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATAGTTATTTTACGTTCCATTTAGCTCGATGATTTGACATTCCCTTGATTTTTACGGATTTTGATTTCCATTACAATGCGAGCATGTTCATTAGACTTGTGTGCTAAAGTATTACTTTAGGTTCTTCTTACAATTATGCACCCCCCTACAAATGCACTTATTGTGTTGGTAAGTTGAATATATA
Unaligned ( gi|15 ): CAAGGTAAGGACCGTTGAAATCTAAAGATTCTTTTAAAATCTTATTTTTCTATGTAAAATACACGAGCTTCTGTTAATTATTTGTAGCATTCAATTTCTCTCACATCGTAATTTATATTATTATGCCATTATATTTAATCTCGATCGGGTTTGATATTCTTTTGAATTTTACGGAGTTTTGATTTCCATTAGGCCTTACAAGGTCAGC
Unaligned ( gi|16 ): GAAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTTTATTTTTTCTATGTTAAATTACCAGCGATCTCTGTTAATTATTGTAGCATTTATTCTTCTCACATCGAGTTATAGTATTATGCATTCCATTTAGCTCGATGGTTGATATTCTTTTGAATTTTACGGATTTGATTTCCATCTAGGCTACAAGGTCAGCTC
Unaligned ( gi|17 ): AAGTAAGGACGTTGCGAAATCTTCACCTTGAAATCTTTTTTATTCATATGTTAATACCAGCGAGTCTCGTTTAATTATGTAGCCATTCAATTCTCTCACATCGAGTTTTATAGCTTATTATGCATCCATTAGCCTCGATGGATGATATTTCTTTTGAATTACGGATTGATTTCCATTAGGC
Unaligned ( gi|18 ): GGTAATGTATATTTTTCGTATGCTTTCAATTATGTCCCCCCAGCTATATAACGACTGGCAGAATGTAGCACATACAAAATTAGATTGCCAATGTGAGTACATTACAGGTTGTCGCATGCTTATTTTAAAAAAATAACTCGACTCAATTTA
Alignments
lowQualScore : 1 6666666 33333 2 2222 1 1 2222 1 1 1 11 1 2222222 1 33333 111 1111 11111 1111 11111 1111 1111111 111 111 1 1 11 111 55555555555555 1111 33333333333 111 22222 11111 222222 1111111111 333333 11 5555555 11 1 111111 2 222 33 2 33 11 1111 1 333333 1 2 1 1 111 11 333333
lowQualScore : 333 4 6 4444444 1 33333 6 7 3 6 8888 3 3 0 6 6 6 77 8 8 8 1111 0 0 0 22 6 6 99 3 888 6 6 1111111 88 0 6 6 99 7 33333 99 6 6 99 111 6 6 6 6 3 0000 6 44444 2222 22222 66 66 5 5 66 5 5 9999 0000 5 66 2222222 66 4 66 66 4 4 8 4 888 4 5 5 8 0 8 444 0 5 11 444 1 33333333333333 1 8 8 0 8888 0 00000000000 444 0 0 3 00000 0 33333 6 0 8 0 77 8 8 8 222222 0 5555555555 666666 33 5555555 1 66 5 111111 0 999 00 7 6 3 00 33 4444 2 0 111111 2 0 3 0 0 0 3 0 777 88 666666
lowQualScore : ... . . ....... . ..... . . . . .... . . . . . . .. . . . .... . . . .. . . .. . ... . . ....... .. . . . .. . ..... .. . . .. ... . . . . . .... . ..... .... ..... .. .. . . .. . . .... .... . .. ....... .. . .. .. . . . . ... . . . . . . ... . . .. ... . .............. . . . . .... . ........... ... . . . ..... . ..... . . . . .. . . . ...... . .......... ...... .. ....... . .. . ...... . ... .. . . . .. .. .... . . ...... . . . . . . . . ... .. ......
lowQualScore : 000 0 7 7777777 0 00000 7 3 3 7 3333 0 3 7 0 7 7 33 0 0 0 2222 0 0 0 55 7 7 22 3 333 7 7 7777777 33 8 7 7 22 3 33333 22 7 7 22 777 7 7 7 7 5 0000 7 33333 1111 66666 99 99 0 0 99 0 0 5555 6666 0 99 0000000 11 4 11 11 4 4 9 4 444 4 0 0 0 8 0 000 0 8 00 000 0 00000000000000 4 0 0 8 6666 8 88888888888 000 8 8 8 00000 8 00000 0 8 0 8 00 0 0 0 888888 8 4444444444 000000 88 0000000 0 00 3 888888 0 333 00 3 7 7 77 88 0000 5 0 222222 5 0 2 0 0 0 2 2 000 55 888888
consensus : TATTTGCATCTATAC-CCCAGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----AGGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGGA-CTGCC-AGGCTGATGT---TT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTG--A--TTATTTTTTCGC-ACTATTCTCAATTTTTGC-C-ATA-TTCATCCTA--AGCTTATTTT---AA-CA--CCCCCCG-A-C-CCCCT--CCCCCA------AAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-A-NATGT-TTTA-C---TACTGTAACA-TTACCC-ATTA-TTA-GACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
Reference ( family-3933 ) : TATTTNNNTCTATACNCCCAGGCAAGCATTCTTCTCATNTTTGCNNTCACATGCATACATTCGCGTTAGCGGCT----AGTAGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGTTGTC-C-T--TTTACC----AGGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCATTGTTGCGCTTCTAGTCCATATTGGC--AGC---ATTNACTTGCGCTAT------------ATTTGCACCTGCTT-GGGA-CTGCC-AGGCTGATGT---TT---TATTTTTGT---TTTTTGTTCAGTAC-----ATGTTTG--A--TTATTTTTTCGC-ACTATTCTCAATTTTTGC-C-ATA-TTCATCCTA--AGCTTATTTT---AA-CA--CCCCCCG-A-C-CCCCT--CCCCCACCCCANAAAANAAGACTGGGGGTGGGGGGGTGTTTA-ATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCTTCCAATGGCCATTTTCCACAACTCGTACCTATTAATAAATAATAT--AGTAA-A-AATGT-TTT--C---TACTGTAACA-TTACCC-ATTA-TTA-GACTACATGTACTTCTG--TTTTATTATCTGAG-G-GGTTTTTTG
gi|1 : TTTGACTCTATACACC---ACAAGCATTCTTCTCATGTTTACAGTCACATGCATACATTCA-GTTA-CGGCTGAAAAGCTAGGTCAAATGG-TCTAATGACT----TC-CA-GT-TCAGC-
gi|1 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatatTACA-TT-CA-GT-T-A-C-GGCTGAAAAG-CTAGG-TCAAATGGT-CTAATGACTTCCAGTTCAGCAATAGAATGCGCAATCCCGTCGCTGGT-CATGATCTGCCA-------TGTCGATCAA-TTGTC-C-T--TT-AC-----AGGTACA----T-CCC-C--CCGTGAACT-GC-ACA-AACTATC--G-GCC-AACAGGGAAACAAGTATG----TGAGCT-A--TGCAGC---G-CGCAT--AAT-GA----TAGTTAT----GG-G--T--ATA----G--T-G--TTAG-C--CCAAACCGG--ACTG-CTATTTGTTA-CAT-CTTCTA-TC-C-TAC-CGGCA-CA-CTGA--TGCAACTTATTTATGCTTGCTTATCT-GTCAGCCAAAACCCTGGCCCTTGCATTTCTGCGCTTTCTGTCCATATT--C--AGCCAGATTTA--TGCGCCTT------------AATTGCACCTTCTTTGGGA-C-GCC-AGGCTGAT-T---TT---TATTTTAGT---TTTTTGTTC-GTAC-----ATA-TTG--ACTTTTTTTTTCCGC-ACTATTCTCAATTTAC-C-C-ATATTTCATACTAGGAGCTTCTTCTTCAAA-CACGCCCCTCGCA-CTCCCCT--CCCCC------CAAAATAAG-CTGGGGAGGGGGGGGaatagaatgcgcaatcccgtcgctggtcatgatctgccatgtcgatcaattgtcctttacaggtacatccccccgtgaactgcacaaactatcggccaacagggaaacaagtatgtgagctatgcagcgcgcataatgatagttatgggtatagtgttagcccaaaccggactgctatttgttacatcttctatcctaccggcacactgatgcaacttatttatgcttgcttatctgtcagccaaaaccctggcccttgcatttctgcgctttctgtccatattcagccagatttatgcgccttaattgcaccttctttgggacgccaggctgatttttattttagttttttgttcgtacatattgactttttttttccgcactattctcaatttacccatatttcatactaggagcttcttcttcaaacacgcccctcgcactcccctccccccaaaataagctggggagggggggg
gi|11 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatattttgactctatacaccacaagcattcttctcatgtttacagtcacatgca--GC--TG-CGT-T--A-T-GA-C--TAGTTAA----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-TTTA-CG--CTTCTAGTC-CATAT-TGACAGCA-TTGACTTGCG-CTTATTTATGCTTGCTTATGTTCTCAGCCAAAACC-TGGC---TACATTGTTACGCATCTAGCCCATTTTGGC--AGC---ATTGACTCGCGCTATTTGTGCTTCCTTATATGCATGTGTTT-GGGA-CTG-----GTTG--------------TTTTTGT---TTT---TTCAGTACTTGTTATGTTTGAAA--TGATTGTTTCAC-ACTACTCTCAA-TTTTGCTC-ATT-TTCATCCT---AGCTTAT-------------CCCCCC----C-CCCC
gi|12 : --TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-TGGCAGCA-TTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTGTTACGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCT-T------------ATTTGCACCTGCTT-GGGA-CTG-----GCTGATGT---TTATTTATTTTTATATTTTTTTGTTCAGCAC-----ATGTTTG--A--TTATTT---CGC-ACTATTCTCAATTTTTAC-CCATA-TTCATC-TA--AGCTTATTTT---AA-CA--TCCCCC--------CCT--CCgtaaa
gi|14 : TGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCT----CATGATCTGC-A-------T-TCGATCAACTTGTC-C-T--TT-ACA----AGGTACAAT--T-CCC-C---C---AACT-GC-ACA-A-CTATC--C-GCC-NNNNNNNNNN-----NNN----NNNNNN-N--NN--NN--NN-NNN-N--N-N-NN-N--NNNNNNN----NN-NNNN--NNN----N--NNN--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGCCAGCA-CTGACTTACg
gi|19 : CAACACATGCCTTCCAATAGCCATTTTCCACAACTC-T-CCTATTAATAAATAATATCAGGTAACA-CATGTATTT--CAGATACT-TAACA-TTACCTAATTA-TTA-GACTACATGTATTCATG--TTCTATTATCCGAGTGTGGTTTTTctctaagttttgttg
gi|2 : cgTATTTGCATCTATAC-CCCAGGCAAGCATT-------TGTTTG-AGT-ACATGC-TACATTCG-GTTAGCGGTN----NNNNNNNNN-NNNNNNNNNNNNNNNTACA-TT-CA-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTATTGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----AGGT-CAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-TTGA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACT-TTGCGCTTCT-GTCCATATTGGC--AGC---ATTTACTTGCGCT-T------------ATTTGCACTTGCTT-GGGA-CTGCCAAGGCTGATGTTTATT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTG--A--TTATTTTTTCGC-ACTATTCTCAATTTTTGC-C-ATA-TTCAT--TA--AGCTTATTTT---AA-CA--CCCCCAA-A-C-CCCCT--CCCCCA------AAAAAAAACCTGGGGG-GGGG------TTACATACATTTCAgg
gi|2 : ACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATGT--AGTAA-A-AATGT-TTTA-C---TACTGTAACA-TTACCC-ATTACTTA-GACTACATGTACTTCTGGTTTTTATTATTT--------TTTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccaacacatgcctcaatgcattttccacaactcgtcctattaaaataatgtagtaaaaatgttttactactgtaacattacccattacttagactacatgtacttctggtttttattatttttttttggg
gi|20 : tatttgcatctataccccaggcaagcatttgtttgagtacatgctacattcggttagcggtnnnnnnnnnnnnnnnnnnnnnnnnntacattcagttagcggctagtagggtcaatggtctattgacttcagttcagaatagtgcgcaatccctcgctgtcatgatctgcattcgatcaagctgtccttttacaggtcaattccccccaactgcacaactatccgccaacagggaaagtttgggccatggctgcgctattgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttctagtccataccggcagcactgacttgcacttatttatgcttgcttattttgtcagccaaaacctggctgcactttgcgcttctgtccatattggcagcatttacttgcgcttatttgcacttgcttgggactgccaaggctgatgtttatttatttttattttttgttcagtacatgtttgattattttttcgcactattctcaatttttgccatattcattaagcttattttaacacccccaaaccccctcccccaaaaaaaaacctgggggggggttacatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncCAGGGAGA-----TTT----TTGGCC-G--GG--GC--TG-CGC-T--A-T-GA-C--TACTTGT----GG-GGTC--ATA----T--ATT--TCAA-C--CAAAACCTG--GCTG-C-ATT-GCCA-TT--CTACTAGTC-CATgg
gi|21 : ATAATAT--AGTAA-ACAAT-C-TTT--C---TATTGTAACA-T--CCC-ATGA-TTA-GACTACTTG---TTCTG---TTTA--ATCTGAG-G-GGTTTTTTGtttatgtgtgcatgcttattta
gi|3 : CTTC-AGTTCAG-AAT-G--TGCGCAATCCC-TCGCTG-T-CAT-ATCTGA-A-------T-TCGATCAAGCTGTCGC-T--TTTACC----AGGTACAAT--TTCCC-C--CC---ACCT-GC-ACA-A-CTATC--CCGCC-AACAGGGAAA-----GTT----TGGGCC-CCTTG--GC--TG-CGC-T--A-T-GAAC--TAGTTAT----GG-GGTCCAGTA----G--TTG--TCAGGC--CAAAACCTG--GCTG-C-ATTTGTTAACAA-CTTCTAGTC-CATAC-TGGCAGCAGCTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGC-AAAACC-TGGC---TGCACTTTTGCGCTTCT-GTCCATATTGGCTAAGC---ATTTACTTGCGCTAA------------ATTTGCACTTGCTT-GGGAACTGCC-AGGCTGATGT---T-----ATTTTTAT---TTTTTGTTCAG--C-----CTGTTTG--A--TT-TTTTTTCGCCACTATTCTTAATTTT-GC-C-ATA-TTCATC-TA--AGCTTATTTT---AAACA--CCCCCCA-AAC-CCCCTTTCCCCCACCCCAAAAAAAAAAACTGGGGGTGGGGGGGTGTTTA-ATACATTTCA
gi|3 : ACCAACACATGCT---CAATG--CATTTTCCACA-CTCGTACTTATTAA---ATAATAT--AGTAA-A-CATGT-TTTAAC---TACTGTAGCAATTACCCCATTG-TTAAGACTACATGTACTTCTG--TTTTA--ATCC--G-T-GGTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccaacacatgctcaatgcattttccacactcgtacttattaaataatatagtaaacatgttttaactactgtagcaattaccccattgttaagactacatgtacttctgttttaatccgtggttttttt
gi|4 : cttcagttcagaatgtgcgcaatccctcgctgtcatatctgaattcgatcaagctgtcgcttttaccaggtacaatttccccccacctgcacaactatcccgccaacagggaaagtttgggccccttggctgcgctatgaactagttatggggtccagtagttgtcaggccaaaacctggctgcatttgttaacaacttctagtccatactggcagcagctgacttgcacttatttatgcttgcttattttgtcagcaaaacctggctgcacttttgcgcttctgtccatattggctaagcatttacttgcgctaaatttgcacttgcttgggaactgccaggctgatgttatttttattttttgttcagcctgtttgattttttttcgccactattcttaattttgccatattcatctaagcttattttaaacaccccccaaaccccctttcccccaccccaaaaaaaaaaactgggggtgggggggtgtttaatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaA-TTGCG-GTGT-AGCAGGCT----AAATAGGTCTCAA-TGGC---AATGACTTC-AGTTCAG-AATAG--TGCGCAATCCCTTCGCTG-T-CTT--CCTGC-AATTGGTGT-CTGATCAA-TTGTC-CGTGGTTTACCCTGGAAGTACAAT--T-CCCACCACC---AAATAGC-ACACA-AAATCCTC-GCC-AACAGGGAAA-----GTTGAGCTGAGCCTA--TG--GCTTTGCCGC-TTAG-T-GA-CGATACCTATACTCGGCGGTC--ACATTACGGTTTGTCTCAG-CCTCAAAA-CTGTTGCTGCC-ATT-GTTA-CAACTTTCAAGTCACATACACGGCAGCA-CTGACTTACt
gi|5 : acacaatttagttagcaaactatatattccaaagattaagaggtttattgccaatcgtttggtaataagcagtacaattaccgtggtctgctacttgctgtagtaatggctctaataatcggatcgactgcatatttatcccgatgatgggaaccaaagttatactctcttttttgctttgtgcacaccgaaaaaatccaccttgcaaaacaaagaaatgggcctgctccccatttggtcatggatcagcaactcggtctgtcctatagttcaagcaagaggcattcacaggcattcggaaattgtgacagacgccttttttcaagaatctatgcacagtgtataggaccaccaggagcagaagacaattctatgtagtttatttcaagatacaatgaacataacgTATTTTCATCTATACCCCCAGGCAAGCATT-------TCTTTG--TTTA-ATGCATACATTCGCGTTAGCGGCT----AGTAGGGTC-AATGGTTCTAATGACTTCAGTT-CA-Gctctaagttttgttga
gi|5 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgTTTAATGCATACA-TT-CGCGT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGTTCTAATGACTTC-AGTTCAG-AATAG--TGCGCA--TCC-TCGCTG-TTCATGATCTGC-A-------T--CGATCAAGCTGTC-C-T--TTTAC-----AGGTACAATGTT-CCC-C--CC---AACT-GCCACA-A-C-ATC--C-GCCCAACAGGGAAA-----GTT----TGGGC--A--TG---C--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTC-AGTC-CATAC-CGGCAGCA-CTGACTaatagtgcgcatcctcgctgttcatgatctgcatcgatcaagctgtccttttacaggtacaatgttccccccaactgccacaacatccgcccaacagggaaagtttgggcatgctgcgctatgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttcagtccataccggcagcactgactacctctaagtttgttg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTTAATTATATGTAGCATTCACTTTCTCTACATCGAGTAGAGTTATTTATGCACTTCCAATTAACTCGATGGTTGATATTCTTTTTTGATTGACGGATTCCGATTCTCATTAGGACCTACAAGGAGTCAGTCATGCATGTCCATCAAACTCGTACGTTGCCACTCCGTTTTACTTTAGTTCTTTTTACAATTACCCCCCCCCCTCCATTACAAACTTGCAATATTGTGTTTGTCAAGTTGGCATCGATAATATATATTTTATGTATTATTTCGCAATTGCTTTCATTATGCCCCCACTATGATAACGAGCTAAGGCACAATGTAGCAACATTACAAATTAAGATGCCAAATGGTGAGTACACTACTTGGTCGCTGCTTATTAATAACCCGGCTCAAATTTATCCCTATGATGGGACTAGAGTACTTGTCTTTCAAGCAACCTACCAAGTCACCAG
Unaligned ( gi|7 ): AGAGGTAAAGACGTGGAATTTTAGCATCTTTGAAATTTTATTTTTCTATGTTAAATGCCAACGTGCTCTATGAATCACTGTAGCATTCAATTCTCCCACATCGAGTTATAGTTATTATACGTTCTATTTAGCTCGATGGTTTGACATTCTTTTGATTTTTACGGATTTTGATTTCCATTACAATGTATGTCTTGCCTTGTGAGCATGTCTATCAAACTCGTATTGCTAATGATTTACATTAGGTTCTTTTTACAATTATCCCCCGTTACAAATGCAATTATTGTATATGTAAGACAAGTTGTAATCTATATTATATATGTTTTATGTATAGAATCTGGTAATGCTTTGAATGTTGTCCTCAGCTATAATAGAAGGAGCTAGGGCACACTATAGCAAACAATATCAAAATTAAGTT
Unaligned ( gi|8 ): CAGAGGTAAGGACGTGGAAATTTAGCATCTTTGAATTTTTGATTTTCTATGTTAAATGCCACCGAGCTCTGTGAATTATTATATAGCATTCAATTCTCCTATATCGAAATTTAGTTATTATACGTTTCATTTAGCTCTATGGTTTGACATTCTTTGATTTTTACGGATTTTGATTTTCCATTACAATGTAAGCCATGTCTTGTGAGCATGTCCATCAAACTCGAAATGCTTAAGCTTTACTTTAGGTTCTTTTTACAATTATCCCCCATTACAAATGCAATCATTGTGTTTGTGAAGTTGCATATTATGTATATAATTTTGTAATGCTTTGAATGTTGTTTCCAGCTATGATAACGAGCTAGGGCACAACGC
Unaligned ( gi|9 ): AGGTAAAGTAACGTGGAAATTTAGCAGTCTTGAATTTTGATTTTTATGTTAAATGCACGAGCTCTGTGAATTATTATATAGCATTCAATTCTACCTATATCGATTTAGCTTATTAACGTTTTCATTTAAGCTCTATGGTTTGACATTCTTTTTGATTTTTAACGGATTTGGATTTTCCATTACATGTAAGCATTGTCTTGTGAGCATGTCCATCAAACTCGAAAATTGCTTAAGCTTTACTTTAGGTTCTTTTTAAAATTATCCCCATTACAAATCAATCATTGTGTTTGTTGAAGTGCAATTTATGTATATAATTTTTGTAATGCTTTGAATGTTTGTTTCCAGCTATGATAAGAGCTAGGGCACAAGC
Unaligned ( gi|10 ): CAGAGGTAAGGAACGATTGAATCAGCATCTTTGAATCTTATTTTTTCTATTTTAAACTACCAGTTCGAGCTTGTTAATTATTGTATGCATTCCATCCTCACTATCTGAATTATAGTTATTATCATTCCATTGTAGCTTCGATGGGTGTGGTTTTTTTTTGAATTATTTCTTGAATTTTACGGATTTTGATTTCCATTAGGTTCCCTATAGTGTCTCCATGCCTTATGAAACATTGTCATCAATACTCGTAAGTGCCATCAAGTTTTACTTTAGGTTCTTTTTCCCAATTACCCCCCCCCATTAAAAAACGCAATTATTGTGTTTGTAAGTTGCGAATCGAAAACAATAGAATATATATT
Unaligned ( gi|13 ): AGAGGTAAGGACGTGGAAATTTGGCGTCTTTGAATTTTTATTATTCTCTGTGAATTGGGTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATAGTTATTTTACGTTCCATTTAGCTCGATGATTTGACATTCCCTTGATTTTTACGGATTTTGATTTCCATTACAATGCGAGCATGTTCATTAGACTTGTGTGCTAAAGTATTACTTTAGGTTCTTCTTACAATTATGCACCCCCCTACAAATGCACTTATTGTGTTGGTAAGTTGAATATATA
Unaligned ( gi|15 ): CAAGGTAAGGACCGTTGAAATCTAAAGATTCTTTTAAAATCTTATTTTTCTATGTAAAATACACGAGCTTCTGTTAATTATTTGTAGCATTCAATTTCTCTCACATCGTAATTTATATTATTATGCCATTATATTTAATCTCGATCGGGTTTGATATTCTTTTGAATTTTACGGAGTTTTGATTTCCATTAGGCCTTACAAGGTCAGC
Unaligned ( gi|16 ): GAAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTTTATTTTTTCTATGTTAAATTACCAGCGATCTCTGTTAATTATTGTAGCATTTATTCTTCTCACATCGAGTTATAGTATTATGCATTCCATTTAGCTCGATGGTTGATATTCTTTTGAATTTTACGGATTTGATTTCCATCTAGGCTACAAGGTCAGCTC
Unaligned ( gi|17 ): AAGTAAGGACGTTGCGAAATCTTCACCTTGAAATCTTTTTTATTCATATGTTAATACCAGCGAGTCTCGTTTAATTATGTAGCCATTCAATTCTCTCACATCGAGTTTTATAGCTTATTATGCATCCATTAGCCTCGATGGATGATATTTCTTTTGAATTACGGATTGATTTCCATTAGGC
Unaligned ( gi|18 ): GGTAATGTATATTTTTCGTATGCTTTCAATTATGTCCCCCCAGCTATATAACGACTGGCAGAATGTAGCACATACAAAATTAGATTGCCAATGTGAGTACATTACAGGTTGTCGCATGCTTATTTTAAAAAAATAACTCGACTCAATTTA
Alignments
lowQualScore : 1 4444444 22222 1 2222 1 1 2222 1 1 1 11 1 2222222 1 22222 111 1111 11111 1111 11111 1111 1111111 111 111 1 11 111 55555555555555 1111 3333333333 111 22222 11 11 1 222222 222 11 333333 11 4444444 1 1 111111 1 11 11 1 11 11 1 222222 1 111 1 1 1 11 11 333333
lowQualScore : 3 6 3333333 22222 6 7 3 6 8888 1 3 0 6 6 6 77 8 8 8 1111 0 0 0 22 6 6 99 3 888 6 6 1111111 88 0 6 6 99 7 33333 6 99 6 6 99 111 6 6 6 6 3 0000 6 44444 2222 22222 66 66 5 5 66 5 5 9999 0000 5 66 2222222 66 4 66 66 4 4 8 4 888 4 5 5 8 0 8 444 8 5 11 444 33333333333333 1 8 8 0 8888 0 5555555555 444 0 3 00000 0 11 6 0 11 8 0 3 8 8 8 222222 0 222 11 666666 11 3333333 3 3 111111 5 6 88 88 7 6 3 88 3 33 0 1 3 1 111111 2 0 000 0 0 0 33 33 3 88 666666
lowQualScore : . . ....... ..... . . . . .... . . . . . . .. . . . .... . . . .. . . .. . ... . . ....... .. . . . .. . ..... . .. . . .. ... . . . . . .... . ..... .... ..... .. .. . . .. . . .... .... . .. ....... .. . .. .. . . . . ... . . . . . . ... . . .. ... .............. . . . . .... . .......... ... . . ..... . .. . . .. . . . . . . ...... . ... .. ...... .. ....... . . ...... . . .. .. . . . .. . .. . . . . ...... . . ... . . . .. .. . .. ......
lowQualScore : 3 7 3333333 00000 7 3 3 7 3333 0 3 7 0 7 7 33 0 0 0 2222 0 0 0 55 7 7 22 3 333 7 7 7777777 33 8 7 7 22 3 33333 7 22 7 7 22 777 7 7 7 7 5 0000 7 33333 1111 66666 99 99 0 0 99 0 0 5555 6666 0 99 0000000 11 4 11 11 4 4 9 4 444 4 0 0 0 8 0 000 8 8 00 000 00000000000000 4 0 0 8 6666 8 0000000000 000 8 8 00000 8 00 0 8 00 0 6 2 0 0 0 888888 8 000 00 000000 00 3333333 3 3 888888 0 7 33 33 3 7 3 33 2 88 0 0 2 2 555555 5 0 222 0 0 0 55 88 2 55 888888
consensus : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGG-ACTGCC-AGGCTGATGT---TT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CATCCTA--AGCTTATTTT---AACAC--CCCCC-G-AC-CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
Reference ( family-3933 ) : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGG-ACTGCC-AGGCTGATGT---TT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CATCCTA--AGCTTATTTT---AACAC--CCCCC-G-AC-CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ANATGTTTT-AC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
gi|1 : TTTGACTCTATACACC-A--CAAGCATTCTTCTCATGTTTACAGTCACATGCATACATTCA-GTTA-CGGCTGAAAAGCTAGGTCAAATGG-TCTAATGACT----TC-CA-GT-TCAGC-
gi|1 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatatTACA-TT-CA-GT-T-A-C-GGCTGAAAAG-CTAGG-TCAAATGGT-CTAATGACTTCCAGTTCAGCAATAGAATGCGCAATCCCGTCGCTGGT-CATGATCTGCCA-------TGTCGATCAA-TTGTC-C-T--TT-AC-----A-GGTACA----T-CCC-C--CCGTGAACT-GC-ACA-AACTATC--G-GCC-AACAGGGAAACAAGTATG----TGAGCT-A--TGCAGC---G-CGCAT--AAT-GA----TAGTTAT----GG-G--T--ATA----G--T-G--TTAG-C--CCAAACCGG--ACTG-CTATTTGTTA-CAT-CTTCTA-TC-C-TAC-CGGCA-CA-CTGA--TGCAACTTATTTATGCTTGCTTATCT-GTCAGCCAAAACCCTGGCCCTTGCATTTCTGCGCTTTCTGTCCATATT--C--AGCCAGATTTA--TGCGCCTT------------AATTGCACCTTCTTTGGG-AC-GCC-AGGCTGAT-T---TT---TATTTTAGT---TTTTTGTTC-GTAC-----ATATT-GA--CTTTTTTTTTCCG-CACTATTCTCAATTTAC-C-C-ATATTTCATACTAGGAGCTTCTTCTTCAAACACGCCCCTC-GCACTCCCC--TCCCCC-------CAAAATAAG-CTGGGGA-GGGGGGGaatagaatgcgcaatcccgtcgctggtcatgatctgccatgtcgatcaattgtcctttacaggtacatccccccgtgaactgcacaaactatcggccaacagggaaacaagtatgtgagctatgcagcgcgcataatgatagttatgggtatagtgttagcccaaaccggactgctatttgttacatcttctatcctaccggcacactgatgcaacttatttatgcttgcttatctgtcagccaaaaccctggcccttgcatttctgcgctttctgtccatattcagccagatttatgcgccttaattgcaccttctttgggacgccaggctgatttttattttagttttttgttcgtacatattgactttttttttccgcactattctcaatttacccatatttcatactaggagcttcttcttcaaacacgcccctcgcactcccctccccccaaaataagctggggagggggggg
gi|11 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatattttgactctatacaccacaagcattcttctcatgtttacagtcacatgca--GC--TG-CGT-T--A-T-GA-C--TAGTTAA----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-TTTA-CG--CTTCTAGTC-CATAT-TGACAGCA-TTGACTTGCG-CTTATTTATGCTTGCTTATGTTCTCAGCCAAAACC-TGGC---TACATTGTTACGCATCTAGCCCATTTTGGC--AGC---ATTGACTCGCGCTATTTGTGCTTCCTTATATGCATGTGTTT-GGG-ACTG-----GTTG--------------TTTTTGT---TTTTT---CAGTACTTGTTATGTTTGAAATGATTGTTT--CA-CACTACTCTCAA-TTTTGCTC-ATTTT-CATCCT---AGCTTAT----------C--CCCCC----C-CCCC--g
gi|12 : --TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-TGGCAGCA-TTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTGTTACGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCT-T------------ATTTGCACCTGCTT-GGG-ACTG-----GCTGATGT---TTATTTATTTTTATATTTTTTTGTTCAGCAC-----ATGTTTGA--TTATTT-----CG-CACTATTCTCAATTTTTAC-CCATATT-CATC-TA--AGCTTATTTT---AACAT--CCCCC--------CC--TCCgtaaa
gi|14 : TGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCT----CATGATCTGC-A-------T-TCGATCAACTTGTC-C-T--TT-AC-----AAGGTACAAT--T-CCC-C---C---AACT-GC-ACA-A-CTATC--C-GCC-NNNNNNNNNN-----NNN----NNNNNN-N--NN--NN--NN-NNN-N--N-N-NN-N--NNNNNNN----NN-NNNN--NNN----N--NNN--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGCCAGCA-CTGACTTACg
gi|19 : CAACACATGCCTTCCAATAGCCATTTTCCACAACTC-T-CCTATTAATAAATAATATCAGGTAACACATGTATT-TCAGATACT-TAAC-ATTA-CCTAATTA-TT-AGACTACATGTATTCATG--TTCTATTATCCGAGTGTGGTTTTTctctaagttttgttg
gi|2 : cgTATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGT-ACATGC-TACATTCG-GTTAGCGGTN----NNNNNNNNN-NNNNNNNNNNNNNNNTACA-TT-CA-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTATTGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGT-CAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-TTGA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACT-TTGCGCTTCT-GTCCATATTGGC--AGC---ATTTACTTGCGCT-T------------ATTTGCACTTGCTT-GGG-ACTGCCAAGGCTGATGTTTATT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CAT--TA--AGCTTATTTT---AACAC--CCCCA-A-AC-CCCC--TCCCCC-------AAAAAAAAACCTGGGGG-GGGG------TTACATACATTTCAgg
gi|2 : ACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATGT--AGTAA-AAATGTTTT-AC---TACTGTAAC-ATTA-CCCA-TTACTT-AGACTACATGTACTTCTGGTTTTTATTATTT--------TTTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccaacacatgcctcaatgcattttccacaactcgtcctattaaaataatgtagtaaaaatgttttactactgtaacattacccattacttagactacatgtacttctggtttttattatttttttttggg
gi|20 : tatttgcatctataccccaggcaagcatttgtttgagtacatgctacattcggttagcggtnnnnnnnnnnnnnnnnnnnnnnnnntacattcagttagcggctagtagggtcaatggtctattgacttcagttcagaatagtgcgcaatccctcgctgtcatgatctgcattcgatcaagctgtccttttacaggtcaattccccccaactgcacaactatccgccaacagggaaagtttgggccatggctgcgctattgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttctagtccataccggcagcactgacttgcacttatttatgcttgcttattttgtcagccaaaacctggctgcactttgcgcttctgtccatattggcagcatttacttgcgcttatttgcacttgcttgggactgccaaggctgatgtttatttatttttattttttgttcagtacatgtttgattattttttcgcactattctcaatttttgccatattcattaagcttattttaacacccccaaaccccctcccccaaaaaaaaacctgggggggggttacatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncCAGGGAGA-----TTT----TTGGCC-G--GG--GC--TG-CGC-T--A-T-GA-C--TACTTGT----GG-GGTC--ATA----T--ATT--TCAA-C--CAAAACCTG--GCTG-C-ATT-GCCA-TT--CTACTAGTC-CATgg
gi|21 : ATAATAT--AGTAA-ACA-ATCTT-TC---TATTGTAAC-AT---CCCA-TGA-TT-AGACTACTTGT---TCTG--TTT-A--ATCTGAG-G-GGTTTTTTGtttatgtgtgcatgcttattta
gi|3 : CTTC-AGTTCAG-AAT-G--TGCGCAATCCC-TCGCTG-T-CAT-ATCTGA-A-------T-TCGATCAAGCTGTCGC-T--TTTACC----A-GGTACAAT--TTCCC-C--CC---ACCT-GC-ACA-A-CTATC--CCGCC-AACAGGGAAA-----GTT----TGGGCC-CCTTG--GC--TG-CGC-T--A-T-GAAC--TAGTTAT----GG-GGTCCAGTA----G--TTG--TCAGGC--CAAAACCTG--GCTG-C-ATTTGTTAACAA-CTTCTAGTC-CATAC-TGGCAGCAGCTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAG-CAAAACC-TGGC---TGCACTTTTGCGCTTCT-GTCCATATTGGCTAAGC---ATTTACTTGCGCTAA------------ATTTGCACTTGCTT-GGGAACTGCC-AGGCTGATG-----T---TATTTTTAT---TTTTTGTTCAG--C-----CTGTTTGA--TT-TTTTTT--CGCCACTATTCTTAA-TTTTGC-C-ATATT-CAT-CTA--AGCTTATTTTA--AACAC--CCCCCAA-AC-CCCCTTTCCCCCACCCCAAAAAAAAAAA-CTGGGGGTGGGGGGGTGTTTA-ATACATTTCA
gi|3 : ACCAACACATGC-T--CAATG--CATTTTCCACA-CTCGTACTTATTAA--A-TAATAT--AGTAA-ACATGTTTTAAC---TACTGTAGCAATTACCCCA-TTG-TTAAGACTACATGTACTTCTG--TTTTA--ATCC--G-T-GGTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccaacacatgctcaatgcattttccacactcgtacttattaaataatatagtaaacatgttttaactactgtagcaattaccccattgttaagactacatgtacttctgttttaatccgtggttttttt
gi|4 : cttcagttcagaatgtgcgcaatccctcgctgtcatatctgaattcgatcaagctgtcgcttttaccaggtacaatttccccccacctgcacaactatcccgccaacagggaaagtttgggccccttggctgcgctatgaactagttatggggtccagtagttgtcaggccaaaacctggctgcatttgttaacaacttctagtccatactggcagcagctgacttgcacttatttatgcttgcttattttgtcagcaaaacctggctgcacttttgcgcttctgtccatattggctaagcatttacttgcgctaaatttgcacttgcttgggaactgccaggctgatgttatttttattttttgttcagcctgtttgattttttttcgccactattcttaattttgccatattcatctaagcttattttaaacaccccccaaaccccctttcccccaccccaaaaaaaaaaactgggggtgggggggtgtttaatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaA-TTGCG-GTGT-AGCAGGCT----AAATAGGTCTCAA-TGGC---AATGACTTC-AGTTCAG-AATAG--TGCGCAATCCCTTCGCTG-T-CTT--CCTGC-AATTGGTGT-CTGATCAA-TTGTC-CGTGGTTTACCCTGGA-AGTACAAT--T-CCCACCACC---AAATAGC-ACACA-AAATCCTC-GCC-AACAGGGAAA-----GTTGAGCTGAGCCTA--TG--GCTTTGCCGC-TTAG-T-GA-CGATACCTATACTCGGCGGTC--ACATTACGGTTTGTCTCAG-CCTCAAAA-CTGTTGCTGCC-ATT-GTTA-CAACTTTCAAGTCACATACACGGCAGCA-CTGACTTACt
gi|5 : acacaatttagttagcaaactatatattccaaagattaagaggtttattgccaatcgtttggtaataagcagtacaattaccgtggtctgctacttgctgtagtaatggctctaataatcggatcgactgcatatttatcccgatgatgggaaccaaagttatactctcttttttgctttgtgcacaccgaaaaaatccaccttgcaaaacaaagaaatgggcctgctccccatttggtcatggatcagcaactcggtctgtcctatagttcaagcaagaggcattcacaggcattcggaaattgtgacagacgccttttttcaagaatctatgcacagtgtataggaccaccaggagcagaagacaattctatgtagtttatttcaagatacaatgaacataacgTATTTTCATCTATACCCCCAGGCAAGCATT-------TCTTTG--TTTA-ATGCATACATTCGCGTTAGCGGCT----AGTAGGGTC-AATGGTTCTAATGACTTCAGTT-CA-Gctctaagttttgttga
gi|5 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgTTTAATGCATACA-TT-CGCGT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGTTCTAATGACTTC-AGTTCAG-AATAG--TGCGCA--TCC-TCGCTG-TTCATGATCTGC-A-------T--CGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAATGTT-CCC-C--CC---AACT-GCCACA-A-C-ATC--C-GCCCAACAGGGAAA-----GTT----TGGGC--A--TG---C--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTC-AGTC-CATAC-CGGCAGCA-CTGACTaatagtgcgcatcctcgctgttcatgatctgcatcgatcaagctgtccttttacaggtacaatgttccccccaactgccacaacatccgcccaacagggaaagtttgggcatgctgcgctatgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttcagtccataccggcagcactgactacctctaagtttgttg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTTAATTATATGTAGCATTCACTTTCTCTACATCGAGTAGAGTTATTTATGCACTTCCAATTAACTCGATGGTTGATATTCTTTTTTGATTGACGGATTCCGATTCTCATTAGGACCTACAAGGAGTCAGTCATGCATGTCCATCAAACTCGTACGTTGCCACTCCGTTTTACTTTAGTTCTTTTTACAATTACCCCCCCCCCTCCATTACAAACTTGCAATATTGTGTTTGTCAAGTTGGCATCGATAATATATATTTTATGTATTATTTCGCAATTGCTTTCATTATGCCCCCACTATGATAACGAGCTAAGGCACAATGTAGCAACATTACAAATTAAGATGCCAAATGGTGAGTACACTACTTGGTCGCTGCTTATTAATAACCCGGCTCAAATTTATCCCTATGATGGGACTAGAGTACTTGTCTTTCAAGCAACCTACCAAGTCACCAG
Unaligned ( gi|7 ): AGAGGTAAAGACGTGGAATTTTAGCATCTTTGAAATTTTATTTTTCTATGTTAAATGCCAACGTGCTCTATGAATCACTGTAGCATTCAATTCTCCCACATCGAGTTATAGTTATTATACGTTCTATTTAGCTCGATGGTTTGACATTCTTTTGATTTTTACGGATTTTGATTTCCATTACAATGTATGTCTTGCCTTGTGAGCATGTCTATCAAACTCGTATTGCTAATGATTTACATTAGGTTCTTTTTACAATTATCCCCCGTTACAAATGCAATTATTGTATATGTAAGACAAGTTGTAATCTATATTATATATGTTTTATGTATAGAATCTGGTAATGCTTTGAATGTTGTCCTCAGCTATAATAGAAGGAGCTAGGGCACACTATAGCAAACAATATCAAAATTAAGTT
Unaligned ( gi|8 ): CAGAGGTAAGGACGTGGAAATTTAGCATCTTTGAATTTTTGATTTTCTATGTTAAATGCCACCGAGCTCTGTGAATTATTATATAGCATTCAATTCTCCTATATCGAAATTTAGTTATTATACGTTTCATTTAGCTCTATGGTTTGACATTCTTTGATTTTTACGGATTTTGATTTTCCATTACAATGTAAGCCATGTCTTGTGAGCATGTCCATCAAACTCGAAATGCTTAAGCTTTACTTTAGGTTCTTTTTACAATTATCCCCCATTACAAATGCAATCATTGTGTTTGTGAAGTTGCATATTATGTATATAATTTTGTAATGCTTTGAATGTTGTTTCCAGCTATGATAACGAGCTAGGGCACAACGC
Unaligned ( gi|9 ): AGGTAAAGTAACGTGGAAATTTAGCAGTCTTGAATTTTGATTTTTATGTTAAATGCACGAGCTCTGTGAATTATTATATAGCATTCAATTCTACCTATATCGATTTAGCTTATTAACGTTTTCATTTAAGCTCTATGGTTTGACATTCTTTTTGATTTTTAACGGATTTGGATTTTCCATTACATGTAAGCATTGTCTTGTGAGCATGTCCATCAAACTCGAAAATTGCTTAAGCTTTACTTTAGGTTCTTTTTAAAATTATCCCCATTACAAATCAATCATTGTGTTTGTTGAAGTGCAATTTATGTATATAATTTTTGTAATGCTTTGAATGTTTGTTTCCAGCTATGATAAGAGCTAGGGCACAAGC
Unaligned ( gi|10 ): CAGAGGTAAGGAACGATTGAATCAGCATCTTTGAATCTTATTTTTTCTATTTTAAACTACCAGTTCGAGCTTGTTAATTATTGTATGCATTCCATCCTCACTATCTGAATTATAGTTATTATCATTCCATTGTAGCTTCGATGGGTGTGGTTTTTTTTTGAATTATTTCTTGAATTTTACGGATTTTGATTTCCATTAGGTTCCCTATAGTGTCTCCATGCCTTATGAAACATTGTCATCAATACTCGTAAGTGCCATCAAGTTTTACTTTAGGTTCTTTTTCCCAATTACCCCCCCCCATTAAAAAACGCAATTATTGTGTTTGTAAGTTGCGAATCGAAAACAATAGAATATATATT
Unaligned ( gi|13 ): AGAGGTAAGGACGTGGAAATTTGGCGTCTTTGAATTTTTATTATTCTCTGTGAATTGGGTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATAGTTATTTTACGTTCCATTTAGCTCGATGATTTGACATTCCCTTGATTTTTACGGATTTTGATTTCCATTACAATGCGAGCATGTTCATTAGACTTGTGTGCTAAAGTATTACTTTAGGTTCTTCTTACAATTATGCACCCCCCTACAAATGCACTTATTGTGTTGGTAAGTTGAATATATA
Unaligned ( gi|15 ): CAAGGTAAGGACCGTTGAAATCTAAAGATTCTTTTAAAATCTTATTTTTCTATGTAAAATACACGAGCTTCTGTTAATTATTTGTAGCATTCAATTTCTCTCACATCGTAATTTATATTATTATGCCATTATATTTAATCTCGATCGGGTTTGATATTCTTTTGAATTTTACGGAGTTTTGATTTCCATTAGGCCTTACAAGGTCAGC
Unaligned ( gi|16 ): GAAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTTTATTTTTTCTATGTTAAATTACCAGCGATCTCTGTTAATTATTGTAGCATTTATTCTTCTCACATCGAGTTATAGTATTATGCATTCCATTTAGCTCGATGGTTGATATTCTTTTGAATTTTACGGATTTGATTTCCATCTAGGCTACAAGGTCAGCTC
Unaligned ( gi|17 ): AAGTAAGGACGTTGCGAAATCTTCACCTTGAAATCTTTTTTATTCATATGTTAATACCAGCGAGTCTCGTTTAATTATGTAGCCATTCAATTCTCTCACATCGAGTTTTATAGCTTATTATGCATCCATTAGCCTCGATGGATGATATTTCTTTTGAATTACGGATTGATTTCCATTAGGC
Unaligned ( gi|18 ): GGTAATGTATATTTTTCGTATGCTTTCAATTATGTCCCCCCAGCTATATAACGACTGGCAGAATGTAGCACATACAAAATTAGATTGCCAATGTGAGTACATTACAGGTTGTCGCATGCTTATTTTAAAAAAATAACTCGACTCAATTTA
Alignments
lowQualScore : 1 4444444 22222 1 2222 1 1 2222 1 1 1 11 1 2222222 1 22222 111 1111 11111 1111 11111 1111 1111111 111 111 1 11 111 55555555555555 1111 3333333333 111 22222 11 11 1 222222 222 11 333333 11 4444444 1 1 111111 1 11 11 1 11 11 1 111111 1 111 1 1 1 11 11 333333
lowQualScore : 3 6 3333333 22222 6 7 3 6 8888 1 3 0 6 6 6 77 8 8 8 1111 0 0 0 22 6 6 99 3 888 6 6 1111111 88 0 6 6 99 7 33333 6 99 6 6 99 111 6 6 6 6 3 0000 6 44444 2222 22222 66 66 5 5 66 5 5 9999 0000 5 66 2222222 66 4 66 66 4 4 8 4 888 4 5 5 8 0 8 444 8 5 11 444 33333333333333 1 8 8 0 8888 0 5555555555 444 0 3 00000 0 11 6 0 11 8 0 3 8 8 8 222222 0 222 11 666666 11 3333333 3 3 111111 5 6 88 88 7 6 3 88 3 33 0 3 1 888888 2 0 000 0 0 0 33 33 3 88 666666
lowQualScore : . . ....... ..... . . . . .... . . . . . . .. . . . .... . . . .. . . .. . ... . . ....... .. . . . .. . ..... . .. . . .. ... . . . . . .... . ..... .... ..... .. .. . . .. . . .... .... . .. ....... .. . .. .. . . . . ... . . . . . . ... . . .. ... .............. . . . . .... . .......... ... . . ..... . .. . . .. . . . . . . ...... . ... .. ...... .. ....... . . ...... . . .. .. . . . .. . .. . . . ...... . . ... . . . .. .. . .. ......
lowQualScore : 3 7 3333333 00000 7 3 3 7 3333 0 3 7 0 7 7 33 0 0 0 2222 0 0 0 55 7 7 22 3 333 7 7 7777777 33 8 7 7 22 3 33333 7 22 7 7 22 777 7 7 7 7 5 0000 7 33333 1111 66666 99 99 0 0 99 0 0 5555 6666 0 99 0000000 11 4 11 11 4 4 9 4 444 4 0 0 0 8 0 000 8 8 00 000 00000000000000 4 0 0 8 6666 8 0000000000 000 8 8 00000 8 00 0 8 00 0 6 2 0 0 0 888888 8 000 00 000000 00 3333333 3 3 888888 0 7 33 33 3 7 3 33 2 88 0 2 2 555555 5 0 222 0 0 0 55 88 2 55 888888
consensus : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGG-ACTGCC-AGGCTGATGT---TT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CATCCTA--AGCTTATTTT---AACAC--CCCCC-G-AC-CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
Reference ( family-3933 ) : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGG-ACTGCC-AGGCTGATGT---TT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CATCCTA--AGCTTATTTT---AACAC--CCCCC-G-AC-CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
gi|1 : TTTGACTCTATACACC-A--CAAGCATTCTTCTCATGTTTACAGTCACATGCATACATTCA-GTTA-CGGCTGAAAAGCTAGGTCAAATGG-TCTAATGACT----TC-CA-GT-TCAGC-
gi|1 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatatTACA-TT-CA-GT-T-A-C-GGCTGAAAAG-CTAGG-TCAAATGGT-CTAATGACTTCCAGTTCAGCAATAGAATGCGCAATCCCGTCGCTGGT-CATGATCTGCCA-------TGTCGATCAA-TTGTC-C-T--TT-AC-----A-GGTACA----T-CCC-C--CCGTGAACT-GC-ACA-AACTATC--G-GCC-AACAGGGAAACAAGTATG----TGAGCT-A--TGCAGC---G-CGCAT--AAT-GA----TAGTTAT----GG-G--T--ATA----G--T-G--TTAG-C--CCAAACCGG--ACTG-CTATTTGTTA-CAT-CTTCTA-TC-C-TAC-CGGCA-CA-CTGA--TGCAACTTATTTATGCTTGCTTATCT-GTCAGCCAAAACCCTGGCCCTTGCATTTCTGCGCTTTCTGTCCATATT--C--AGCCAGATTTA--TGCGCCTT------------AATTGCACCTTCTTTGGG-AC-GCC-AGGCTGAT-T---TT---TATTTTAGT---TTTTTGTTC-GTAC-----ATATT-GA--CTTTTTTTTTCCG-CACTATTCTCAATTTAC-C-C-ATATTTCATACTAGGAGCTTCTTCTTCAAACACGCCCCTC-GCACTCCCC--TCCCCC-------CAAAATAAG-CTGGGGA-GGGGGGGaatagaatgcgcaatcccgtcgctggtcatgatctgccatgtcgatcaattgtcctttacaggtacatccccccgtgaactgcacaaactatcggccaacagggaaacaagtatgtgagctatgcagcgcgcataatgatagttatgggtatagtgttagcccaaaccggactgctatttgttacatcttctatcctaccggcacactgatgcaacttatttatgcttgcttatctgtcagccaaaaccctggcccttgcatttctgcgctttctgtccatattcagccagatttatgcgccttaattgcaccttctttgggacgccaggctgatttttattttagttttttgttcgtacatattgactttttttttccgcactattctcaatttacccatatttcatactaggagcttcttcttcaaacacgcccctcgcactcccctccccccaaaataagctggggagggggggg
gi|11 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatattttgactctatacaccacaagcattcttctcatgtttacagtcacatgca--GC--TG-CGT-T--A-T-GA-C--TAGTTAA----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-TTTA-CG--CTTCTAGTC-CATAT-TGACAGCA-TTGACTTGCG-CTTATTTATGCTTGCTTATGTTCTCAGCCAAAACC-TGGC---TACATTGTTACGCATCTAGCCCATTTTGGC--AGC---ATTGACTCGCGCTATTTGTGCTTCCTTATATGCATGTGTTT-GGG-ACTG-----GTTG--------------TTTTTGT---TTTTT---CAGTACTTGTTATGTTTGAAATGATTGTTT--CA-CACTACTCTCAA-TTTTGCTC-ATTTT-CATCCT---AGCTTAT----------C--CCCCC----C-CCCC--g
gi|12 : --TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-TGGCAGCA-TTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTGTTACGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCT-T------------ATTTGCACCTGCTT-GGG-ACTG-----GCTGATGT---TTATTTATTTTTATATTTTTTTGTTCAGCAC-----ATGTTTGA--TTATTT-----CG-CACTATTCTCAATTTTTAC-CCATATT-CATC-TA--AGCTTATTTT---AACAT--CCCCC--------CC--TCCgtaaa
gi|14 : TGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCT----CATGATCTGC-A-------T-TCGATCAACTTGTC-C-T--TT-AC-----AAGGTACAAT--T-CCC-C---C---AACT-GC-ACA-A-CTATC--C-GCC-NNNNNNNNNN-----NNN----NNNNNN-N--NN--NN--NN-NNN-N--N-N-NN-N--NNNNNNN----NN-NNNN--NNN----N--NNN--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGCCAGCA-CTGACTTACg
gi|19 : CAACACATGCCTTCCAATAGCCATTTTCCACAACTC-T-CCTATTAATAAATAATATCAGGTAACACATGTATT-TCAGATACT-TAAC-ATTA-CCTAATTA-TT-AGACTACATGTATTCATG--TTCTATTATCCGAGTGTGGTTTTTctctaagttttgttg
gi|2 : cgTATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGT-ACATGC-TACATTCG-GTTAGCGGTN----NNNNNNNNN-NNNNNNNNNNNNNNNTACA-TT-CA-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTATTGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGT-CAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-TTGA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACT-TTGCGCTTCT-GTCCATATTGGC--AGC---ATTTACTTGCGCT-T------------ATTTGCACTTGCTT-GGG-ACTGCCAAGGCTGATGTTTATT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CAT--TA--AGCTTATTTT---AACAC--CCCCA-A-AC-CCCC--TCCCCC-------AAAAAAAAACCTGGGGG-GGGG------TTACATACATTTCAgg
gi|2 : ACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATGT--AGTAA-AAATGTTTT-AC---TACTGTAAC-ATTA-CCCA-TTACTT-AGACTACATGTACTTCTGGTTTTTATTATTT--------TTTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccaacacatgcctcaatgcattttccacaactcgtcctattaaaataatgtagtaaaaatgttttactactgtaacattacccattacttagactacatgtacttctggtttttattatttttttttggg
gi|20 : tatttgcatctataccccaggcaagcatttgtttgagtacatgctacattcggttagcggtnnnnnnnnnnnnnnnnnnnnnnnnntacattcagttagcggctagtagggtcaatggtctattgacttcagttcagaatagtgcgcaatccctcgctgtcatgatctgcattcgatcaagctgtccttttacaggtcaattccccccaactgcacaactatccgccaacagggaaagtttgggccatggctgcgctattgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttctagtccataccggcagcactgacttgcacttatttatgcttgcttattttgtcagccaaaacctggctgcactttgcgcttctgtccatattggcagcatttacttgcgcttatttgcacttgcttgggactgccaaggctgatgtttatttatttttattttttgttcagtacatgtttgattattttttcgcactattctcaatttttgccatattcattaagcttattttaacacccccaaaccccctcccccaaaaaaaaacctgggggggggttacatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncCAGGGAGA-----TTT----TTGGCC-G--GG--GC--TG-CGC-T--A-T-GA-C--TACTTGT----GG-GGTC--ATA----T--ATT--TCAA-C--CAAAACCTG--GCTG-C-ATT-GCCA-TT--CTACTAGTC-CATgg
gi|21 : ATAATAT--AGTAA-ACA-ATCTT-TC---TATTGTAAC-AT---CCCA-TGA-TT-AGACTACTTGT---TCTG--TTT-A--ATCTGAG-G-GGTTTTTTGtttatgtgtgcatgcttattta
gi|3 : CTTC-AGTTCAG-AAT-G--TGCGCAATCCC-TCGCTG-T-CAT-ATCTGA-A-------T-TCGATCAAGCTGTCGC-T--TTTACC----A-GGTACAAT--TTCCC-C--CC---ACCT-GC-ACA-A-CTATC--CCGCC-AACAGGGAAA-----GTT----TGGGCC-CCTTG--GC--TG-CGC-T--A-T-GAAC--TAGTTAT----GG-GGTCCAGTA----G--TTG--TCAGGC--CAAAACCTG--GCTG-C-ATTTGTTAACAA-CTTCTAGTC-CATAC-TGGCAGCAGCTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAG-CAAAACC-TGGC---TGCACTTTTGCGCTTCT-GTCCATATTGGCTAAGC---ATTTACTTGCGCTAA------------ATTTGCACTTGCTT-GGGAACTGCC-AGGCTGATG-----T---TATTTTTAT---TTTTTGTTCAG--C-----CTGTTTGA--TT-TTTTTT--CGCCACTATTCTTAA-TTTTGC-C-ATATT-CAT-CTA--AGCTTATTTTA--AACAC--CCCCCAA-AC-CCCCTTTCCCCCACCCCAAAAAAAAAAA-CTGGGGGTGGGGGGGTGTTTA-ATACATTTCA
gi|3 : ACCAACACATGC-T--CAATG--CATTTTCCACA-CTCGTACTTATTAA--A-TAATAT--AGTAA-ACATGTTTTAAC---TACTGTAGCAATTACCCCA-TTG-TTAAGACTACATGTACTTCTG--TTTTA--ATCC--G-T-GGTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccaacacatgctcaatgcattttccacactcgtacttattaaataatatagtaaacatgttttaactactgtagcaattaccccattgttaagactacatgtacttctgttttaatccgtggttttttt
gi|4 : cttcagttcagaatgtgcgcaatccctcgctgtcatatctgaattcgatcaagctgtcgcttttaccaggtacaatttccccccacctgcacaactatcccgccaacagggaaagtttgggccccttggctgcgctatgaactagttatggggtccagtagttgtcaggccaaaacctggctgcatttgttaacaacttctagtccatactggcagcagctgacttgcacttatttatgcttgcttattttgtcagcaaaacctggctgcacttttgcgcttctgtccatattggctaagcatttacttgcgctaaatttgcacttgcttgggaactgccaggctgatgttatttttattttttgttcagcctgtttgattttttttcgccactattcttaattttgccatattcatctaagcttattttaaacaccccccaaaccccctttcccccaccccaaaaaaaaaaactgggggtgggggggtgtttaatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaA-TTGCG-GTGT-AGCAGGCT----AAATAGGTCTCAA-TGGC---AATGACTTC-AGTTCAG-AATAG--TGCGCAATCCCTTCGCTG-T-CTT--CCTGC-AATTGGTGT-CTGATCAA-TTGTC-CGTGGTTTACCCTGGA-AGTACAAT--T-CCCACCACC---AAATAGC-ACACA-AAATCCTC-GCC-AACAGGGAAA-----GTTGAGCTGAGCCTA--TG--GCTTTGCCGC-TTAG-T-GA-CGATACCTATACTCGGCGGTC--ACATTACGGTTTGTCTCAG-CCTCAAAA-CTGTTGCTGCC-ATT-GTTA-CAACTTTCAAGTCACATACACGGCAGCA-CTGACTTACt
gi|5 : acacaatttagttagcaaactatatattccaaagattaagaggtttattgccaatcgtttggtaataagcagtacaattaccgtggtctgctacttgctgtagtaatggctctaataatcggatcgactgcatatttatcccgatgatgggaaccaaagttatactctcttttttgctttgtgcacaccgaaaaaatccaccttgcaaaacaaagaaatgggcctgctccccatttggtcatggatcagcaactcggtctgtcctatagttcaagcaagaggcattcacaggcattcggaaattgtgacagacgccttttttcaagaatctatgcacagtgtataggaccaccaggagcagaagacaattctatgtagtttatttcaagatacaatgaacataacgTATTTTCATCTATACCCCCAGGCAAGCATT-------TCTTTG--TTTA-ATGCATACATTCGCGTTAGCGGCT----AGTAGGGTC-AATGGTTCTAATGACTTCAGTT-CA-Gctctaagttttgttga
gi|5 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgTTTAATGCATACA-TT-CGCGT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGTTCTAATGACTTC-AGTTCAG-AATAG--TGCGCA--TCC-TCGCTG-TTCATGATCTGC-A-------T--CGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAATGTT-CCC-C--CC---AACT-GCCACA-A-C-ATC--C-GCCCAACAGGGAAA-----GTT----TGGGC--A--TG---C--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTC-AGTC-CATAC-CGGCAGCA-CTGACTaatagtgcgcatcctcgctgttcatgatctgcatcgatcaagctgtccttttacaggtacaatgttccccccaactgccacaacatccgcccaacagggaaagtttgggcatgctgcgctatgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttcagtccataccggcagcactgactacctctaagtttgttg
blockSeqs : C G . AGT C A C G . N . N A G G GC G . A . A C . TC . . . T TT G . ATTGGTG T C G G GG T CCTGG A GT T A CA . A C C . T CTC C . GAGC CCCT . TT C . TA . T CGA ACTC C CA TTACGGT TC G CT TT C . T A AAC A A G . . . G A TA . ATTTGTGCTTCCTT G . A CCAA GTTTATT ATT T TTGTT AA A . C T G T C . CCT A . AAAC TT ACCCCAA C T GGGTGT . C . . A G A . A . . T T AAC G A TAC . C A AC GT T TT GAGG
blockSeqs : . G . TTT . . . G . A . T A . . A . . . . . . . C . . . . T G . . T G . . . T C . . . . . . . . . . T CC . . . CTA . . . . . . . AC . . . G . . . . . . . . AA . . . . . . G A . . AA C . . CCA GTTTATT . C . . A . . T A . . . CTA . . AAC . . . . . . . . G . . A . . T C AC G . TA . . . AC . T . GT
blockSeqs : T . . A . . . . . . . . . . . . T G . . T G . . . T . . . . . . . . . . . T C . . . NN . . . . . . . C . . . N . . . . . . . . G . . . . . . T . . . T T . . . GT . T . . A . . . G . . . CTA . . C . . . . . T TC G . . . . . . . . . .
blockSeqs : A . . G . . . . . . . T . . . C G . . . T . . . . . . . . . . . A C . . . CA . . . . . . . N . . . G . . . . . . . . G . . . . . . . . . . T T . . . . . . . . . . . . G . . . TA . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . CG . . . . . . . C . . . T . . . . . . . . A . . .
blockSeqs : . . A . . . . . . . C . . . G . . . . . . . . A . . .
blockSeqs : . . . . . . . C . . . G . . . . . . . . T . . .
blockSeqs : . . . . . . . . A .
blockSeqCons : ** T** T* *** ***** ** C*** A** *** *** AT************ **** GT******** ** CTA*** *** ** C*****
originalCons : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGG-ACTGCC-AGGCTGATGT---TT---TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CATCCTA--AGCTTATTTT---AACAC--CCCCC-G-AC-CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
finalCons : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTGT--CATGATCTGC-A-------TT-CGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GAC---TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTAT------------ATTTGCACCTGCTT-GGG-ACTG----GGCTGATGT--------TATTTTTAT---TTTTTGTTCAGTAC-----ATGTTTGA--TTATTTTTT--CG-CACTATTCTCAATTTTTGC-C-ATATT-CATCTA---AGCTTATTTT---AACAC--CCCCCC-----CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTTAATTATATGTAGCATTCACTTTCTCTACATCGAGTAGAGTTATTTATGCACTTCCAATTAACTCGATGGTTGATATTCTTTTTTGATTGACGGATTCCGATTCTCATTAGGACCTACAAGGAGTCAGTCATGCATGTCCATCAAACTCGTACGTTGCCACTCCGTTTTACTTTAGTTCTTTTTACAATTACCCCCCCCCCTCCATTACAAACTTGCAATATTGTGTTTGTCAAGTTGGCATCGATAATATATATTTTATGTATTATTTCGCAATTGCTTTCATTATGCCCCCACTATGATAACGAGCTAAGGCACAATGTAGCAACATTACAAATTAAGATGCCAAATGGTGAGTACACTACTTGGTCGCTGCTTATTAATAACCCGGCTCAAATTTATCCCTATGATGGGACTAGAGTACTTGTCTTTCAAGCAACCTACCAAGTCACCAG
Unaligned ( gi|7 ): AGAGGTAAAGACGTGGAATTTTAGCATCTTTGAAATTTTATTTTTCTATGTTAAATGCCAACGTGCTCTATGAATCACTGTAGCATTCAATTCTCCCACATCGAGTTATAGTTATTATACGTTCTATTTAGCTCGATGGTTTGACATTCTTTTGATTTTTACGGATTTTGATTTCCATTACAATGTATGTCTTGCCTTGTGAGCATGTCTATCAAACTCGTATTGCTAATGATTTACATTAGGTTCTTTTTACAATTATCCCCCGTTACAAATGCAATTATTGTATATGTAAGACAAGTTGTAATCTATATTATATATGTTTTATGTATAGAATCTGGTAATGCTTTGAATGTTGTCCTCAGCTATAATAGAAGGAGCTAGGGCACACTATAGCAAACAATATCAAAATTAAGTT
Unaligned ( gi|8 ): CAGAGGTAAGGACGTGGAAATTTAGCATCTTTGAATTTTTGATTTTCTATGTTAAATGCCACCGAGCTCTGTGAATTATTATATAGCATTCAATTCTCCTATATCGAAATTTAGTTATTATACGTTTCATTTAGCTCTATGGTTTGACATTCTTTGATTTTTACGGATTTTGATTTTCCATTACAATGTAAGCCATGTCTTGTGAGCATGTCCATCAAACTCGAAATGCTTAAGCTTTACTTTAGGTTCTTTTTACAATTATCCCCCATTACAAATGCAATCATTGTGTTTGTGAAGTTGCATATTATGTATATAATTTTGTAATGCTTTGAATGTTGTTTCCAGCTATGATAACGAGCTAGGGCACAACGC
Unaligned ( gi|9 ): AGGTAAAGTAACGTGGAAATTTAGCAGTCTTGAATTTTGATTTTTATGTTAAATGCACGAGCTCTGTGAATTATTATATAGCATTCAATTCTACCTATATCGATTTAGCTTATTAACGTTTTCATTTAAGCTCTATGGTTTGACATTCTTTTTGATTTTTAACGGATTTGGATTTTCCATTACATGTAAGCATTGTCTTGTGAGCATGTCCATCAAACTCGAAAATTGCTTAAGCTTTACTTTAGGTTCTTTTTAAAATTATCCCCATTACAAATCAATCATTGTGTTTGTTGAAGTGCAATTTATGTATATAATTTTTGTAATGCTTTGAATGTTTGTTTCCAGCTATGATAAGAGCTAGGGCACAAGC
Unaligned ( gi|10 ): CAGAGGTAAGGAACGATTGAATCAGCATCTTTGAATCTTATTTTTTCTATTTTAAACTACCAGTTCGAGCTTGTTAATTATTGTATGCATTCCATCCTCACTATCTGAATTATAGTTATTATCATTCCATTGTAGCTTCGATGGGTGTGGTTTTTTTTTGAATTATTTCTTGAATTTTACGGATTTTGATTTCCATTAGGTTCCCTATAGTGTCTCCATGCCTTATGAAACATTGTCATCAATACTCGTAAGTGCCATCAAGTTTTACTTTAGGTTCTTTTTCCCAATTACCCCCCCCCATTAAAAAACGCAATTATTGTGTTTGTAAGTTGCGAATCGAAAACAATAGAATATATATT
Unaligned ( gi|13 ): AGAGGTAAGGACGTGGAAATTTGGCGTCTTTGAATTTTTATTATTCTCTGTGAATTGGGTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATAGTTATTTTACGTTCCATTTAGCTCGATGATTTGACATTCCCTTGATTTTTACGGATTTTGATTTCCATTACAATGCGAGCATGTTCATTAGACTTGTGTGCTAAAGTATTACTTTAGGTTCTTCTTACAATTATGCACCCCCCTACAAATGCACTTATTGTGTTGGTAAGTTGAATATATA
Unaligned ( gi|15 ): CAAGGTAAGGACCGTTGAAATCTAAAGATTCTTTTAAAATCTTATTTTTCTATGTAAAATACACGAGCTTCTGTTAATTATTTGTAGCATTCAATTTCTCTCACATCGTAATTTATATTATTATGCCATTATATTTAATCTCGATCGGGTTTGATATTCTTTTGAATTTTACGGAGTTTTGATTTCCATTAGGCCTTACAAGGTCAGC
Unaligned ( gi|16 ): GAAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTTTATTTTTTCTATGTTAAATTACCAGCGATCTCTGTTAATTATTGTAGCATTTATTCTTCTCACATCGAGTTATAGTATTATGCATTCCATTTAGCTCGATGGTTGATATTCTTTTGAATTTTACGGATTTGATTTCCATCTAGGCTACAAGGTCAGCTC
Unaligned ( gi|17 ): AAGTAAGGACGTTGCGAAATCTTCACCTTGAAATCTTTTTTATTCATATGTTAATACCAGCGAGTCTCGTTTAATTATGTAGCCATTCAATTCTCTCACATCGAGTTTTATAGCTTATTATGCATCCATTAGCCTCGATGGATGATATTTCTTTTGAATTACGGATTGATTTCCATTAGGC
Unaligned ( gi|18 ): GGTAATGTATATTTTTCGTATGCTTTCAATTATGTCCCCCCAGCTATATAACGACTGGCAGAATGTAGCACATACAAAATTAGATTGCCAATGTGAGTACATTACAGGTTGTCGCATGCTTATTTTAAAAAAATAACTCGACTCAATTTA
Alignments
lowQualScore : 1 4444444 22222 1 2222 1 1 2222 1 1 1 11 1 2222222 1 22222 111 1111 11111 1111 11111 1111 1111111 11 111 1 11 111 5555555555555 444444444444444444444 111 22222 11 11 1 11 11 222 333333333333 11 4444444 1 1 111111 1 11 11 1 11 11 1 111111 1 111 1 1 1 11 11 333333
lowQualScore : 3 6 3333333 22222 6 7 3 6 8888 1 3 0 6 6 6 77 8 8 8 1111 0 0 0 22 6 6 99 3 888 6 6 1111111 88 0 6 6 99 7 33333 6 99 6 6 99 111 6 6 6 6 3 0000 6 44444 2222 22222 66 66 5 5 66 5 5 9999 0000 5 66 2222222 66 4 66 66 4 4 8 4 55 4 5 5 8 0 8 444 8 5 11 444 6666666666666 1 8 8 666666666666666666666 8 444 0 0 3 00000 0 11 66 0 11 8 0 11 8 8 8 11 0 222 8 333333333333 11 3333333 3 3 111111 5 6 88 88 7 6 3 88 3 33 0 3 1 888888 2 0 000 0 0 0 33 33 3 88 666666
lowQualScore : . . ....... ..... . . . . .... . . . . . . .. . . . .... . . . .. . . .. . ... . . ....... .. . . . .. . ..... . .. . . .. ... . . . . . .... . ..... .... ..... .. .. . . .. . . .... .... . .. ....... .. . .. .. . . . . .. . . . . . . ... . . .. ... ............. . . . ..................... . ... . . . ..... . .. .. . .. . . .. . . . .. . ... . ............ .. ....... . . ...... . . .. .. . . . .. . .. . . . ...... . . ... . . . .. .. . .. ......
lowQualScore : 3 7 3333333 00000 7 3 3 7 3333 0 3 7 0 7 7 33 0 0 0 2222 0 0 0 55 7 7 22 3 333 7 7 7777777 33 8 7 7 22 3 33333 7 22 7 7 22 777 7 7 7 7 5 0000 7 33333 1111 66666 99 99 0 0 99 0 0 5555 6666 0 99 0000000 11 4 11 11 4 4 9 4 00 4 0 0 0 8 0 000 8 8 00 000 8888888888888 4 0 0 666666666666666666666 0 000 8 8 8 00000 8 00 88 6 00 0 6 22 0 0 0 00 8 000 0 222222222222 00 3333333 3 3 888888 0 7 33 33 3 7 3 33 2 88 0 2 2 555555 5 0 222 0 0 0 55 88 2 55 888888
consensus : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTA------------TATTTGCACCTGCTT-GGG-AC--TGCCA-GGCTGATGTTTATTT-ATTTTTA---TTTTTTGTTCAGTAC-----ATGTTTG--ATTATTTTTT--CG-CACTATTCTCAATTTTTG-C-CATATT-CAT-CTA--AGCTTATTTT---AACAC-CCCC--C---C-----CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
Reference ( family-3933 ) : TATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGTCACATGCATACATTCG-GTTAGCGGCT----AGCNGGGTC-AATGGTTCTAATGACTACA-TT-CG-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTAATGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTNTTGCGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCTA------------TATTTGCACCTGCTT-GGG-AC--TG----GGCTGATG-----TT-ATTTTTA---TTTTTTGTTCAGTAC-----ATGTTTG--ATTATTTTTT--CG-CACTATTCTCAATTTTTG-C-CATATT-CAT-CTA--AGCTTATTTT---AACAC-CCCC--C---C-----CCCC--TCCCCC-------AAAAAAAAA-CTGGGGG-GGGGGGGTGTTTACATACATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATAT--AGTAA-ACATGTTTT-NC---TACTGTAAC-ATTA-CCCA-TTA-TT-AGACTACATGTACTTCTG--TTTTATTATCCGAG-G-GGTTTTTTG
gi|1 : TTTGACTCTATACACC-A--CAAGCATTCTTCTCATGTTTACAGTCACATGCATACATTCA-GTTA-CGGCTGAAAAGCTAGGTCAAATGG-TCTAATGACT----TC-CA-GT-TCAGC-
gi|1 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatatTACA-TT-CA-GT-T-A-C-GGCTGAAAAG-CTAGG-TCAAATGGT-CTAATGACTTCCAGTTCAGCAATAGAATGCGCAATCCCGTCGCTGGT-CATGATCTGCCA-------TGTCGATCAA-TTGTC-C-T--TT-AC-----A-GGTACA----T-CCC-C--CCGTGAACT-GC-ACA-AACTATC--G-GCC-AACAGGGAAACAAGTATG----TGAGCT-A--TGCAGC---G-CGCAT--AAT-GA----TAGTTAT----GG-G--T--ATA----G--T-G--TTAG-C--CCAAACCGG--ACTG-CTATTTGTTA-CAT-CTTCTA-TC-C-TAC-CGGCA-CA-CTGA--TGCAACTTATTTATGCTTGCTTATCT-GTCAGCCAAAACCCTGGCCCTTGCATTTCTGCGCTTTCTGTCCATATT--C--AGCCAGATTTA--TGCGCCT------------TAATTGCACCTTCTTTGGG-ACGCCA----GGCTGATT-----TTTATTTTAG---TTTTTTGTTC-GTAC-----ATATT-G--ACTTTTTTTTTCCG-CACTATTCTCAATTTAC--C-CATATTTCATACTAGGAGCTTCTTCTTCAAACACGCCCC--T---CGCACTCCCC--TCCCCC-------CAAAATAAG-CTGGGGA-GGGGGGGaatagaatgcgcaatcccgtcgctggtcatgatctgccatgtcgatcaattgtcctttacaggtacatccccccgtgaactgcacaaactatcggccaacagggaaacaagtatgtgagctatgcagcgcgcataatgatagttatgggtatagtgttagcccaaaccggactgctatttgttacatcttctatcctaccggcacactgatgcaacttatttatgcttgcttatctgtcagccaaaaccctggcccttgcatttctgcgctttctgtccatattcagccagatttatgcgccttaattgcaccttctttgggacgccaggctgatttttattttagttttttgttcgtacatattgactttttttttccgcactattctcaatttacccatatttcatactaggagcttcttcttcaaacacgcccctcgcactcccctccccccaaaataagctggggagggggggg
gi|11 : attaccttaggcttcgtctgctacaattatcacccccccccctccacccccccccctattacaaattgacaattattggtttcaagtctcgaaaataatctatttgtatggatatatttcgataatgcctttcaatatgtccccagcctaaataccgagctagggcacaatgtagaaacaatatcaattaacattttcgtaatggtgagctataccgtggtcgcctagtggccttattaataagtccgactcaaatgtatcgatgatccggaccaatcagtcttgtctcttcaagcagaaagtcaccttgcaaaacagcaatcgcggtgggtgcaagtcacaaagcaagattcacaggcatcggttgggacaggccttttctatattttgactctatacaccacaagcattcttctcatgtttacagtcacatgca--GC--TG-CGT-T--A-T-GA-C--TAGTTAA----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-TTTA-CG--CTTCTAGTC-CATAT-TGACAGCA-TTGACTTGCG-CTTATTTATGCTTGCTTATGTTCTCAGCCAAAACC-TGGC---TACATTGTTACGCATCTAGCCCATTTTGGC--AGC---ATTGACTCGCGCTATTTGTGCTTCCTTATATGCATGTGTTT-GGG-AC--TG-----------G-----TT-GTTTTTG---TTTT---TTCAGTACTTGTTATGTTTGAAATGATTGTTT--CA-CACTACTCTCAA-TTTTG-CTCATTTT-CAT-CCT--AGCTTAT----------C-CCCC--C---C-----CCCC--g
gi|12 : --TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CG--CTTCTAGTC-CATAC-TGGCAGCA-TTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACTGTTACGCTTCTAGTCCATATTGGC--AGC---ATTTACTTGCGCT-------------TATTTGCACCTGCTT-GGG-AC--T-----GGCTGATGTTTATTT-ATTTTTATATTTTTTTGTTCAGCAC-----ATGTTTG--ATTA---TTT--CG-CACTATTCTCAATTTTTACC-CATATT-CAT-CTA--AGCTTATTTT---AACAT-CCCC--C---C-----CTCC--gtaaa
gi|14 : TGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCT----CATGATCTGC-A-------T-TCGATCAACTTGTC-C-T--TT-AC-----AAGGTACAAT--T-CCC-C---C---AACT-GC-ACA-A-CTATC--C-GCC-NNNNNNNNNN-----NNN----NNNNNN-N--NN--NN--NN-NNN-N--N-N-NN-N--NNNNNNN----NN-NNNN--NNN----N--NNN--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGCCAGCA-CTGACTTACg
gi|19 : CAACACATGCCTTCCAATAGCCATTTTCCACAACTC-T-CCTATTAATAAATAATATCAGGTAACACATGTATT-TCAGATACT-TAAC-ATTA-CCTAATTA-TT-AGACTACATGTATTCATG--TTCTATTATCCGAGTGTGGTTTTTctctaagttttgttg
gi|2 : cgTATTTGCATCTATACCCC-AGGCAAGCATT-------TGTTTG-AGT-ACATGC-TACATTCG-GTTAGCGGTN----NNNNNNNNN-NNNNNNNNNNNNNNNTACA-TT-CA-GT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGT-CTATTGACTTC-AGTTCAG-AATAG--TGCGCAATCCC-TCGCTG-T-CATGATCTGC-A-------T-TCGATCAAGCTGTC-C-T--TTTAC-----A-GGT-CAAT--T-CCC-C--CC---AACT-GC-ACA-A-CTATC--C-GCC-AACAGGGAAA-----GTT----TGGGCC-A--TG--GC--TG-CGC-T--A-TTGA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTCTAGTC-CATAC-CGGCAGCA-CTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAGCCAAAACC-TGGC---TGCACT-TTGCGCTTCT-GTCCATATTGGC--AGC---ATTTACTTGCGCT-------------TATTTGCACTTGCTT-GGG-AC--TGCCAAGGCTGATGTTTATTT-ATTTTTA---TTTTTTGTTCAGTAC-----ATGTTTG--ATTATTTTTT--CG-CACTATTCTCAATTTTTG-C-CATATT-CAT--TA--AGCTTATTTT---AACAC-CCCCAAA---C-----CCCC--TCCCCC-------AAAAAAAAACCTGGGGG-GGGG------TTACATACATTTCAgg
gi|2 : ACCAACACATGCCT--CAATG--CATTTTCCACAACTCGT-CCTATTAA--AATAATGT--AGTAA-AAATGTTTT-AC---TACTGTAAC-ATTA-CCCA-TTACTT-AGACTACATGTACTTCTGGTTTTTATTATTT--------TTTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaccaacacatgcctcaatgcattttccacaactcgtcctattaaaataatgtagtaaaaatgttttactactgtaacattacccattacttagactacatgtacttctggtttttattatttttttttggg
gi|20 : tatttgcatctataccccaggcaagcatttgtttgagtacatgctacattcggttagcggtnnnnnnnnnnnnnnnnnnnnnnnnntacattcagttagcggctagtagggtcaatggtctattgacttcagttcagaatagtgcgcaatccctcgctgtcatgatctgcattcgatcaagctgtccttttacaggtcaattccccccaactgcacaactatccgccaacagggaaagtttgggccatggctgcgctattgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttctagtccataccggcagcactgacttgcacttatttatgcttgcttattttgtcagccaaaacctggctgcactttgcgcttctgtccatattggcagcatttacttgcgcttatttgcacttgcttgggactgccaaggctgatgtttatttatttttattttttgttcagtacatgtttgattattttttcgcactattctcaatttttgccatattcattaagcttattttaacacccccaaaccccctcccccaaaaaaaaacctgggggggggttacatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncCAGGGAGA-----TTT----TTGGCC-G--GG--GC--TG-CGC-T--A-T-GA-C--TACTTGT----GG-GGTC--ATA----T--ATT--TCAA-C--CAAAACCTG--GCTG-C-ATT-GCCA-TT--CTACTAGTC-CATgg
gi|21 : ATAATAT--AGTAA-ACA-ATCTT-TC---TATTGTAAC-AT---CCCA-TGA-TT-AGACTACTTGT---TCTG--TTT-A--ATCTGAG-G-GGTTTTTTGtttatgtgtgcatgcttattta
gi|3 : CTTC-AGTTCAG-AAT-G--TGCGCAATCCC-TCGCTG-T-CAT-ATCTGA-A-------T-TCGATCAAGCTGTCGC-T--TTTACC----A-GGTACAAT--TTCCC-C--CC---ACCT-GC-ACA-A-CTATC--CCGCC-AACAGGGAAA-----GTT----TGGGCC-CCTTG--GC--TG-CGC-T--A-T-GAAC--TAGTTAT----GG-GGTCCAGTA----G--TTG--TCAGGC--CAAAACCTG--GCTG-C-ATTTGTTAACAA-CTTCTAGTC-CATAC-TGGCAGCAGCTGACTTGCA-CTTATTTATGCTTGCTTATTTTGTCAG-CAAAACC-TGGC---TGCACTTTTGCGCTTCT-GTCCATATTGGCTAAGC---ATTTACTTGCGCTA------------AATTTGCACTTGCTT-GGGAAC--TGCCA-GGCTGATG-----TT-ATTTTTA---TTTTTTGTTCAG--C-----CTGTTTG--ATT-TTTTTT--CGCCACTATTCTTAA-TTTTG-C-CATATT-CAT-CTA--AGCTTATTTTA--AACAC-CCCC--CAAAC-----CCCCTTTCCCCCACCCCAAAAAAAAAAA-CTGGGGGTGGGGGGGTGTTTA-ATACATTTCA
gi|3 : ACCAACACATGC-T--CAATG--CATTTTCCACA-CTCGTACTTATTAA--A-TAATAT--AGTAA-ACATGTTTTAAC---TACTGTAGCAATTACCCCA-TTG-TTAAGACTACATGTACTTCTG--TTTTA--ATCC--G-T-GGTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccaacacatgctcaatgcattttccacactcgtacttattaaataatatagtaaacatgttttaactactgtagcaattaccccattgttaagactacatgtacttctgttttaatccgtggttttttt
gi|4 : cttcagttcagaatgtgcgcaatccctcgctgtcatatctgaattcgatcaagctgtcgcttttaccaggtacaatttccccccacctgcacaactatcccgccaacagggaaagtttgggccccttggctgcgctatgaactagttatggggtccagtagttgtcaggccaaaacctggctgcatttgttaacaacttctagtccatactggcagcagctgacttgcacttatttatgcttgcttattttgtcagcaaaacctggctgcacttttgcgcttctgtccatattggctaagcatttacttgcgctaaatttgcacttgcttgggaactgccaggctgatgttatttttattttttgttcagcctgtttgattttttttcgccactattcttaattttgccatattcatctaagcttattttaaacaccccccaaaccccctttcccccaccccaaaaaaaaaaactgggggtgggggggtgtttaatacatttcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaA-TTGCG-GTGT-AGCAGGCT----AAATAGGTCTCAA-TGGC---AATGACTTC-AGTTCAG-AATAG--TGCGCAATCCCTTCGCTG-T-CTT--CCTGC-AATTGGTGT-CTGATCAA-TTGTC-CGTGGTTTACCCTGGA-AGTACAAT--T-CCCACCACC---AAATAGC-ACACA-AAATCCTC-GCC-AACAGGGAAA-----GTTGAGCTGAGCCTA--TG--GCTTTGCCGC-TTAG-T-GA-CGATACCTATACTCGGCGGTC--ACATTACGGTTTGTCTCAG-CCTCAAAA-CTGTTGCTGCC-ATT-GTTA-CAACTTTCAAGTCACATACACGGCAGCA-CTGACTTACt
gi|5 : acacaatttagttagcaaactatatattccaaagattaagaggtttattgccaatcgtttggtaataagcagtacaattaccgtggtctgctacttgctgtagtaatggctctaataatcggatcgactgcatatttatcccgatgatgggaaccaaagttatactctcttttttgctttgtgcacaccgaaaaaatccaccttgcaaaacaaagaaatgggcctgctccccatttggtcatggatcagcaactcggtctgtcctatagttcaagcaagaggcattcacaggcattcggaaattgtgacagacgccttttttcaagaatctatgcacagtgtataggaccaccaggagcagaagacaattctatgtagtttatttcaagatacaatgaacataacgTATTTTCATCTATACCCCCAGGCAAGCATT-------TCTTTG--TTTA-ATGCATACATTCGCGTTAGCGGCT----AGTAGGGTC-AATGGTTCTAATGACTTCAGTT-CA-Gctctaagttttgttga
gi|5 : ttactttaggttatttttacaattattacccccccccccacttacaatgcaattattgtgtttgtcaagttgcatcgacaatatttgtatgtatattatttcgttcaatgctttcaatttatgtccccccactatgagaacgactaggcacaatgtagtagcacaacaatatcaaaattatagattgccaatggtgtcagtacataaataaccgttggtcgactgcttattgaataactactcaaaactctatcccgatgatggggaccaaagttcttgtctttcaaagtcagcaatcgcttgcacaagtcaaggcacaggggcatttctactattgtacatatttgtgggttgtggacagacgctcttttgTTTAATGCATACA-TT-CGCGT-T-AGC-GGCT----AG-TAGGG-TCAA-TGGTTCTAATGACTTC-AGTTCAG-AATAG--TGCGCA--TCC-TCGCTG-TTCATGATCTGC-A-------T--CGATCAAGCTGTC-C-T--TTTAC-----A-GGTACAATGTT-CCC-C--CC---AACT-GCCACA-A-C-ATC--C-GCCCAACAGGGAAA-----GTT----TGGGC--A--TG---C--TG-CGC-T--A-T-GA-C--TAGTTAT----GG-GGTC--ATA----G--TTG--TCAG-C--CAAAACCTG--GCTG-C-ATT-GTTA-CA--CTTC-AGTC-CATAC-CGGCAGCA-CTGACTaatagtgcgcatcctcgctgttcatgatctgcatcgatcaagctgtccttttacaggtacaatgttccccccaactgccacaacatccgcccaacagggaaagtttgggcatgctgcgctatgactagttatggggtcatagttgtcagccaaaacctggctgcattgttacacttcagtccataccggcagcactgactacctctaagtttgttg
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGTTAATTATATGTAGCATTCACTTTCTCTACATCGAGTAGAGTTATTTATGCACTTCCAATTAACTCGATGGTTGATATTCTTTTTTGATTGACGGATTCCGATTCTCATTAGGACCTACAAGGAGTCAGTCATGCATGTCCATCAAACTCGTACGTTGCCACTCCGTTTTACTTTAGTTCTTTTTACAATTACCCCCCCCCCTCCATTACAAACTTGCAATATTGTGTTTGTCAAGTTGGCATCGATAATATATATTTTATGTATTATTTCGCAATTGCTTTCATTATGCCCCCACTATGATAACGAGCTAAGGCACAATGTAGCAACATTACAAATTAAGATGCCAAATGGTGAGTACACTACTTGGTCGCTGCTTATTAATAACCCGGCTCAAATTTATCCCTATGATGGGACTAGAGTACTTGTCTTTCAAGCAACCTACCAAGTCACCAG
Unaligned ( gi|7 ): AGAGGTAAAGACGTGGAATTTTAGCATCTTTGAAATTTTATTTTTCTATGTTAAATGCCAACGTGCTCTATGAATCACTGTAGCATTCAATTCTCCCACATCGAGTTATAGTTATTATACGTTCTATTTAGCTCGATGGTTTGACATTCTTTTGATTTTTACGGATTTTGATTTCCATTACAATGTATGTCTTGCCTTGTGAGCATGTCTATCAAACTCGTATTGCTAATGATTTACATTAGGTTCTTTTTACAATTATCCCCCGTTACAAATGCAATTATTGTATATGTAAGACAAGTTGTAATCTATATTATATATGTTTTATGTATAGAATCTGGTAATGCTTTGAATGTTGTCCTCAGCTATAATAGAAGGAGCTAGGGCACACTATAGCAAACAATATCAAAATTAAGTT
Unaligned ( gi|8 ): CAGAGGTAAGGACGTGGAAATTTAGCATCTTTGAATTTTTGATTTTCTATGTTAAATGCCACCGAGCTCTGTGAATTATTATATAGCATTCAATTCTCCTATATCGAAATTTAGTTATTATACGTTTCATTTAGCTCTATGGTTTGACATTCTTTGATTTTTACGGATTTTGATTTTCCATTACAATGTAAGCCATGTCTTGTGAGCATGTCCATCAAACTCGAAATGCTTAAGCTTTACTTTAGGTTCTTTTTACAATTATCCCCCATTACAAATGCAATCATTGTGTTTGTGAAGTTGCATATTATGTATATAATTTTGTAATGCTTTGAATGTTGTTTCCAGCTATGATAACGAGCTAGGGCACAACGC
Unaligned ( gi|9 ): AGGTAAAGTAACGTGGAAATTTAGCAGTCTTGAATTTTGATTTTTATGTTAAATGCACGAGCTCTGTGAATTATTATATAGCATTCAATTCTACCTATATCGATTTAGCTTATTAACGTTTTCATTTAAGCTCTATGGTTTGACATTCTTTTTGATTTTTAACGGATTTGGATTTTCCATTACATGTAAGCATTGTCTTGTGAGCATGTCCATCAAACTCGAAAATTGCTTAAGCTTTACTTTAGGTTCTTTTTAAAATTATCCCCATTACAAATCAATCATTGTGTTTGTTGAAGTGCAATTTATGTATATAATTTTTGTAATGCTTTGAATGTTTGTTTCCAGCTATGATAAGAGCTAGGGCACAAGC
Unaligned ( gi|10 ): CAGAGGTAAGGAACGATTGAATCAGCATCTTTGAATCTTATTTTTTCTATTTTAAACTACCAGTTCGAGCTTGTTAATTATTGTATGCATTCCATCCTCACTATCTGAATTATAGTTATTATCATTCCATTGTAGCTTCGATGGGTGTGGTTTTTTTTTGAATTATTTCTTGAATTTTACGGATTTTGATTTCCATTAGGTTCCCTATAGTGTCTCCATGCCTTATGAAACATTGTCATCAATACTCGTAAGTGCCATCAAGTTTTACTTTAGGTTCTTTTTCCCAATTACCCCCCCCCATTAAAAAACGCAATTATTGTGTTTGTAAGTTGCGAATCGAAAACAATAGAATATATATT
Unaligned ( gi|13 ): AGAGGTAAGGACGTGGAAATTTGGCGTCTTTGAATTTTTATTATTCTCTGTGAATTGGGTTAGCAATCAATTCTCCCATATCGGCTTATAGTTATAGTTATTTTACGTTCCATTTAGCTCGATGATTTGACATTCCCTTGATTTTTACGGATTTTGATTTCCATTACAATGCGAGCATGTTCATTAGACTTGTGTGCTAAAGTATTACTTTAGGTTCTTCTTACAATTATGCACCCCCCTACAAATGCACTTATTGTGTTGGTAAGTTGAATATATA
Unaligned ( gi|15 ): CAAGGTAAGGACCGTTGAAATCTAAAGATTCTTTTAAAATCTTATTTTTCTATGTAAAATACACGAGCTTCTGTTAATTATTTGTAGCATTCAATTTCTCTCACATCGTAATTTATATTATTATGCCATTATATTTAATCTCGATCGGGTTTGATATTCTTTTGAATTTTACGGAGTTTTGATTTCCATTAGGCCTTACAAGGTCAGC
Unaligned ( gi|16 ): GAAGGTAAGGACGTTGAAATCTAGCATCTTTGAAATCTTTTATTTTTTCTATGTTAAATTACCAGCGATCTCTGTTAATTATTGTAGCATTTATTCTTCTCACATCGAGTTATAGTATTATGCATTCCATTTAGCTCGATGGTTGATATTCTTTTGAATTTTACGGATTTGATTTCCATCTAGGCTACAAGGTCAGCTC
Unaligned ( gi|17 ): AAGTAAGGACGTTGCGAAATCTTCACCTTGAAATCTTTTTTATTCATATGTTAATACCAGCGAGTCTCGTTTAATTATGTAGCCATTCAATTCTCTCACATCGAGTTTTATAGCTTATTATGCATCCATTAGCCTCGATGGATGATATTTCTTTTGAATTACGGATTGATTTCCATTAGGC
Unaligned ( gi|18 ): GGTAATGTATATTTTTCGTATGCTTTCAATTATGTCCCCCCAGCTATATAACGACTGGCAGAATGTAGCACATACAAAATTAGATTGCCAATGTGAGTACATTACAGGTTGTCGCATGCTTATTTTAAAAAAATAACTCGACTCAATTTA