lowQualScore : 3333333333333333333333333333333333333333333333333333333333333
lowQualScore : 444444444444444 222222 11 11 1 4444444444444444444444444444444444444444444444444444444444444 1 11 11 3333333333 11 222222 11 1111 11 1 1 11 2222 1 11 22222222 1 111 222222 222 33333333 1 11 44444444444444444444444444444444444444444444444444444444444444 111 33 111 1 1111111111 1 11 5555555555555555555555555 1 11111 11 1111 11 444444444444444444444444444 11 777777777777 11 11 1111 111 1111 3333 55555555555555 11111 222 333333333 11 1 1 11 1 22 1 11 222 1 1 1111111 4444444444 222 1 2 11 444444444444 11 4444444 2222 3333333 1 11 2 1 1111 55555555555 1 2222 4 55555555555555555 222 222
lowQualScore : 333333333333333 9 888888 33 33 3 0 9999999999999999999999999999999999999999999999999999999999999 3 11 5 0 11 88 6666666666 00 333333 8 1 11 2 7777 11 6 0 5 33 5 8 8 2 11 0 8 66 0 33 8888 0 8 6 8 11 99999999 3 8 4 444 0 8 8 333333 6 000 33333333 6 8 8 11 0 99999999999999999999999999999999999999999999999999999999999999 444 8 00 0 0 1 444 2 6 6666666666 0 1 1 6 0 8 8 11 4444444444444444444444444 11 0 99999 33 7777 3 8 99 444444444444444444444444444 11 8 8 8 999999999999 8 11 5 8 6 11 6666 444 8 7777 4444 9 8 99 6 6 6 6 3 33333333333333 66666 999 000000000 3 6 88 6 2 3 6 1 44 2 1 3 22 3 88 444 1 3 5 8 8888888 2 6666666666 444 0 0 11 444444444444 66 0000000 2222 8 2222222 3 0 33 0 0 2 4444 66666666666 0 2 0000 9 0 3 4 33333333333333333 44 3 444 222 3
lowQualScore : ............... . ...... .. .. . . ............................................................. . .. . . .. .. .......... .. ...... . . .. . .... .. . . . .. . . . . .. . . .. . .. .... . . . . .. ........ . . . ... . . . ...... . ... ........ . . . .. . .............................................................. ... . .. . . . ... . . .......... . . . . . . . .. ......................... .. . ..... .. .... . . .. ........................... .. . . . ............ . .. . . . .. .... ... . .... .... . . .. . . . . . .............. ..... ... ......... . . .. . . . . . .. . . . .. . .. ... . . . . ....... . .......... ... . . .. ............ .. ....... .... . ....... . . .. . . . .... ........... . . .... . . . . ................. .. . ... ... .
lowQualScore : 888888888888888 2 888888 88 88 2 0 2222222222222222222222222222222222222222222222222222222222222 2 88 0 8 00 88 0000000000 66 000000 0 4 00 2 0000 44 0 8 0 66 0 0 0 8 00 8 0 44 8 66 0000 8 0 4 0 00 00000000 2 0 8 000 8 0 0 000000 0 888 88888888 0 0 0 00 8 44444444444444444444444444444444444444444444444444444444444444 000 0 00 8 8 4 000 8 0 8888888888 6 0 0 0 8 0 0 00 2222222222222222222222222 00 0 55555 88 8888 2 0 00 000000000000000000000000000 00 0 0 0 000000000000 0 00 6 0 6 00 8888 000 0 0000 0000 8 0 22 7 7 7 7 2 88888888888888 77777 222 555555555 5 7 33 7 2 3 7 7 55 8 5 3 00 3 33 333 0 3 0 0 2222222 5 8888888888 555 0 0 00 888888888888 88 0000000 4444 0 0000000 2 0 22 0 0 5 8888 88888888888 5 5 8888 8 0 2 0 88888888888888888 22 2 222 555 0
consensus : AATC--T-GT--AATT---ACAGGAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGAT-A------------AATTTTTTG--------------------NCTGANTCTTTTGAAATAAAAAAGT-TATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAGTTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TTATAAT-TGCTAA-TC--ATTT--------AANAAA-GGAAAATT---AGCCTTGAAAACGTATA-A-CG------GACGTTAC--GCGCG----T--CTGTC-AA-T-A--CGATGG-----------GT---AGATT------T-NAAA---CGTCG--AAAATGAT----G------TATA---T-ATAACTATAATTCAAGATTATT---CTTAATAGTAATTT--G-TTTTA-TATATCTATTGAT-TAGACATC-CAT-CGA--TAA-T-TCTTA---AG--TTGATA---TCTTAA-ACA-ACGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTA----AT-TAACATC-CGTTCT--TCGCTATG-AATACTAT--CTGCAGA---TACGGA-ATACAA-TGATCATTACT----GGTTTTTCT--ATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGG-G---TGA-----ATTAAA-----AATAGA-ACGGGA-------TATGGGGAAGAT-TGTATTG--TC-GGTCAACANC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTTTACCTT-ATTGTTTT--ATAATACAC-ACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGA-CC------CTAT-TNGT-CATATGAGAATAT--TTTGCATTCGG--A-AGTTTT--TACAGTTTTGGGACT-CGATGTAA--AGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AACGAAGTGAT--ATCTAATTTGTTA---AATTTAAAATGTATAGATCTGTAAAATATTTAANACAA-TT-A-TA--AATA-TACAATATTTC--AATATTATTCCGTNTA
Reference ( gi|5 ) : AATC--T-GT--AAT----ACAGGAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTT--TGCTGAATTTTTTGAAATAAAAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNGAAAACGT-TATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATAGTTTACTACT-GCATATTTTTACTCA-AC-TATTTCAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TTATAAT-TGCTTA-TC--ATTT--------AACAAA-GGAAATTT---AGCCTTGAAAACGTATA-A-CG------GACGTCAC--ACGCG----T--CTGTC-AA-T-A--CGATGG-----------GT---AGATT------T-AAAA---CGTTA--AAAACGAT----G------TATA---T-AT--CTATAATTCAAGATTATT---CTTGATAGT-ATTT--G-TTTTA-TATATCTATTGAT-TAGACATC-CAT-CGA--TAA-T-TCTTA--TAG--TTAATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTA---CATGTGACATC-CGTTCT--TCGCTATG-AATACTTT--CTGCAGA---CACGAA-ATACAA-TGATCATTACT----GGTTTTT-T--ATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATG------TGG-----ATTAAA-----AATAGA-ACGGAG-------TATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACAC-A-TTTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGA-CC------TTAT-CTGT-CATA-GAGAATAT--TTTGCATTCGG--A-A----T--TACA-TTTT--GAC--CGATGTAA--AGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AACAAA--GAT--ATC-AAATTGTTA---AATTTAAAATGTAT-GATCTGTAAAATATTTAAAAC-A-TT-AATA--AATATTATGATATTTC--TATATTATACCGTTTA
gi|3 : AATC--TTGT--AATT---ACAGGAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGAT--------------AATTTTTTG---------------------CTGAATCTTTTGAAATAAAAAAGT-TATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTATAA----AGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AAA--AGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAATT--TTATAAT-TGCTAA-TC--ATTT--------AACAAA-GGAAAATT---AGCCTTGAAAACGTATA-A-CG------GACGTTAC--GCGCG----T--CTGTC-AA-T-A--CGATGG-----------GTA--AGATT------T-AAAC---CGTCG--AAAATGAT----G------TATA---T-ATAACTATAATTC-AGGTTATT---CTTAATAGTAATTT--GTTTTTATTATCTCTATTGAT-T--ACATC-CAT-CGA--TAA-T-TCTTA---AG--TTGATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTT---------TGTAACATC-CGTTCT--TCGCTATG-AATACTTT--CTGCAGA---TACG-A-ATACAA-TGTTCATTACT----GGTTTTTCT--ATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TC-AAATGGGGA--TGA-----ATTAAA-----AATAG--ACGGGA-------TATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAG-TTGTGTT---CTT-ATTGTTTT--ATAATACAC-ACTTTTG-ATTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACCC------TTACACTGT-CATA-GAGAATAT--TTTGCATCTGG--AGA----T--TACA-TTTT--GACCGCGATGTAA--AGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAA--AATGAATC-AAATT-TTAATTAATCT-AAATGTATAGATCTGTAAAATATTTAATACAA-TTAAATAAGAATA-TACGATATTTC--AATATTAT-CCGTTTA
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGT----ACGGGAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGAT-ATTTTTCCCCCTGAATATTTTGAAATAAAAAAGT--------TATGCCTCTTTTTTCTAGAAAATGTCCACAATTAAT-----T--TGCGAATG--------CT----T-----ATACATG----TA------A-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TTATAAT-TGCTAA-TC--ATTT--------AAGAAA-GGAAAATT---AGCCTTGAAAACGTATA-A-CG------GACATTAC--GCGCG--------TGTCAAA-T-A--CGATGG-----------GT---AGAAT------T-TAAA---TGTC---GAAATGATGGGGG------CATATGTT-AT--TCATGATTCAAGATTAAT---TTTAATAGT-ATTT--G-TTTTA-TATATCTATTGATGTAGACATC-CAT-CGC--CAATT-TCTGG--CAG--TTctaa
gi|6 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATCG-T-GT--AATT---ACAGGAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGAT--------------AATTTTTT------------------TTCGCTGAATCCTTTGAAATAAAAAAGT-TATACCTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTATAA----AGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAAA--AGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T-ATAAT-TGCT-A-TC--ATTT--------AACAAAAGGAAAATT---AGCCTTTGAAACGTAAA-AGCG------GACGTTACTAACGCGCGGTT--CTGTCCAA-T-AATCGATGATGTTGCACTACGC---GAATTATTCTAC-AAAATAACGTTG--AAAA--AT----G------TATA---T-ATAACTATAATTCAAGATTATT---CTTGACAGTAATTT--G--TTTA-TATATCTATTGATATAGACATCACATACGA--TAA-TATCTTA---AGTTTTAATAATCTCTTAACAGA-ACGATTT--ATCAGA-CACA-ATA-TTC----TGAGG---TCATGATGCTGCGTGGT--G-TGTGCATG-TCGGTCAA-TTTC----------TAACATC-CGTTCT--TTGCTATG-AATACTTT--CTGCAGA---TACGGA-ATACAA-TGATCATTACT----GGTTTTTCT--ATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATG------TGGGATGAATTCAA-----AATAG--ACGGGA-------TATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAG-TTATGTT--CCTT-ATTGTTTT--ATAATACAC-ACTCTTG----ATTTTGATGCggtgtgcgtggtcggtcaatttcgcaaaacatcgatccgttcttcgcttgaatactatctgcatatacggttatacgatgatcattactacttggttttttctatcactttttcgacccttacatgctgcttatatcatcaaaatggtggagtgaattaaattataagtagacggggagtaatatatggggaagattgtattggtccggtcaacaattttgaaaaataactgacgtcacacaaacaatgacatatagatttgtcctaatttcattaaaatatggattcgtttgtgtttaccttaattgtttttaataatacacaatcttgaattattctatgcgatattggtatttgtctgtgcctattaatcatatgagaatattttgcattcggaagtttttacagttttgggactcgatgtaagcatacgggtgtgacacttatatgaaattgtcgaaccgtaattatatctgctgaaacaaagtgaatctaatttgttaaatttaaaatgtatagatctgtaaaatatttaaaacaattaaaatatacaatatttcaatattattccgtgtactaa
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT--AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGATAA------------AATTTTTCG--------------------CCTGATCTTTTAGAAATAAAAAAGT--ATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATATTTC-ACT-A-ACGTATGTTAAAGAAGACG--TGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTTATAATGTGATTAATCGAACTTCTTATAAAAATGAA-CGACACTTGCAAGACTCGACA--GTATAGA-CGATGATCGAGGTTTT---TGCG----TAGCT-TC-AA-TTA--CG-TGT-----------GTCATAGATT------TCGAAA---CGGTGCGAAAATGAT----GAT----TATA---T-ATA-CTTTAAT-CAAGATTATTACGCTTAATAGG-ATCTTCG-TATAT-TATATCTAATATT-TAGACATC-CAT-CGAATTAC-T-CCTTAGGTAG--T--ATA---TTCTTA-ACATATG-TTTACATC--GCCACAGATTCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTA---AA----ACATCGTATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTTCT--ATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCA-TCCAAATG------TGG-----AATGAA-----
gi|4 : agatcagattagatggaaattactcggtcccgtccacttttgaattgaaaaatctttgcacaaaaaaatacAAAAAGT-TATGCCTCTTTTTTCT--AGAAAATGT-CCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TTATAAT-TGCTAA-TC--ATTT--------AAGAAA-GGAAAATT---AGCCTTGAAAACGTATA-A-CG------GACATTAC--GCGCG----T----GTC-AAAT-A--CGATGG-----------GT---AGAAT------T-TAAA---TGTCG--AAA-TGAT----GGGGGCATATG---TTAT--TCATGATTCAAGATTAAT---TTTAATAGT-ATTT--G-TT----------------T-TATATATC-TAT-TGA--TG----------------------------TAG-ACA-----TCC--ATC--G-C-CA-AT--TTC----T--GG----CA------------GTTGG-TGTGCGTGGTCGGTCAA-TTTCGCAAAACAT-CGA--TC-CGTTCT--TCGCT-TG-AATACTAT--CTGCATA---TACGGTTATACGA-TGATCATTACTACTTGGTTTTT-TCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCA-TCAAAATGGTGGAGTGA-----ATTAAATTATAAGTAGA--CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAA-TCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG---C------CTAT-TAAT-CATATGAGAATAT--TTTGCATTCGG--A-AGTTTT--TACAGTTTTGGGACT-CGATGT-A--AGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AACAAAGTGA---ATCTAATTTGTTA---AATTTAAAATGTATAGATCTGTAAAATATTTAAAACAA-TT-A--A--AATA-TACAATATTTC--AATATTATTCCGTGTAtttcaaaaatcacggga
gi|12 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataaatctcttaagtacgggaattgtatttcattcttttatggtataaatacatagcattgatatttttccccctgaatattttgaaataCA-AT--TCCAGATT--TG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTA---------ACATC-CGTTCT--TCACTATG-AATACTATACCTGCAGA---TACGGA-ATACAA-TGACCATTACT----GGTTTTTCT--ATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCA-TCActaa
gi|2 : A--TG-C---CTTAT-ATCAATCAAAGTC--------------ATTAAC-----CGTCTATACGGGA-------TATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTT-CATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATGATACAC-ACTCTTG-ATTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGA-CCAGACAATTAT--TGTATATA-GAGAATATTGTTTGCATTTGGATA-G----T--TAC--TTTT--GA---CGATTT-A--AGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGTGAA--GTT--TTCTAATTTGTT-----ATTTTAAATGTATAGATCTGT-TAATATTCTATAT-ACTT-ATTA--AAGA-TATAA-ATTTTAATATATT----CGTT
gi|13 : GA-----ATTAAA-----AATAGA--CGGGA-------TATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGT-TTGtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|1 : -------TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAA-TCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG---C------CTAT-TAAT-CATATGAGAATAT--TTTGCATTCGG--A-AGTTTT--TACAGTTTTGGGACT-CGATGT-A--AGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AACAAAGTGA---ATCTAATTTGTTA---AATTTAAAATGTATAGATCTGTAAAATATTTAAAACAA-TT-A--A--AATA-TACAATATTTC--AATATTATTCCGTGTAatgcgatattgaagtattt
gi|13 : TT-ACTGTTTT--TTTTTTAGC-A-TTTTG-ATTGTTT-GATGCGAT-ATT----GAAGTATTTctaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|6 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacataTAT--TTTGAATTC------A----TCCCACA-TTTT--GA---TGACATAAGCAGCATAA-GGGT
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC
Alignments
lowQualScore : 11 111 222222 11 11 99999999999999999999999999999999999999999999 11 4444444444 222222 11 1111 11 11 11111111 22222 1111 111 11 1111 1111 11 11 5555555555555555555 222222 2222 11 111 11 11 11 111 11 11 1111111 111 333333333333 4444444 2222 111 1111 5555555555555 11111 111 1111111 11 1 11 1 33 1 11 1 1 1111 22222222222222 1 11 11 333333 11 2222222 2 11111 2 11 11 2 11 1 22222222
lowQualScore : 99 8 8 0 444 5 333333 11 11 0 8 11111111111111111111111111111111111111111111 8 8 0 11 8 5555555555 333333 8 11 4 7777 0 0 5 33 3 8 8 3 11 0 8 66 0 0 99999999 8 8 0 00000 8 1 8 7777 1 444 0 8 8 11 8 7777 7777 11 8 8 8 11 0 8 2222222222222222222 99 333333 8 8 44 8888 11 8 0 0 444 66 33 8 88 0 1 1 999 8 8 11 11 8 8 11 1 8 444 11 8 99999 11 11 88 6 6 99 4444444 111 444444444444 99 6 0 6 6 3333333 0000 99 3 6 4 99 111 6 6 4444 6 3 6 77 5 5 5 5 1 2222222222222 77 44444 1 999 8888888 5 55 5 1 1 5 4 88 0 1 00 3 88 6 1 1 6 4444 7 55555555555555 6 88 11 111111 55 0000000 0 8 22222 0 8 88 0 8 8 11 00 3 0 6 11 0 6 0 0 1 1 22222222 8 0 0 0 1
lowQualScore : .. . . . ... . ...... .. .. . . ............................................ . . . .. . .......... ...... . .. . .... . . . .. . . . . .. . . .. . . ........ . . . ..... . . . .... . ... . . . .. . .... .... .. . . . .. . . ................... .. ...... . . .. .... .. . . . ... .. .. . .. . . . ... . . .. .. . . .. . . ... .. . ..... .. .. .. . . .. ....... ... ............ .. . . . . ....... .... .. . . . .. ... . . .... . . . .. . . . . . ............. .. ..... . ... ....... . .. . . . . . .. . . .. . .. . . . . .... . .............. . .. .. ...... .. ....... . . ..... . . .. . . . .. .. . . . .. . . . . . . ........ . . . . .
lowQualScore : 00 0 0 8 000 6 000000 00 00 8 0 66666666666666666666666666666666666666666666 8 0 8 00 0 4444444444 000000 0 00 6 0000 8 8 0 66 8 0 0 8 00 8 0 44 8 8 88888888 0 0 8 00000 0 0 0 0000 0 000 8 0 0 00 0 0000 0000 00 0 0 0 00 8 0 2222222222222222222 00 000000 0 0 66 0000 66 0 8 8 000 88 66 0 88 6 0 0 444 0 0 00 44 0 0 00 4 0 000 88 0 00000 00 00 88 7 7 22 3333333 777 222222222222 22 7 7 7 7 5555555 8888 22 2 7 0 22 777 7 7 2222 7 7 7 99 7 7 7 7 4 7777777777777 99 33333 4 111 6666666 7 77 7 0 4 7 3 11 4 4 77 3 33 7 4 4 7 2222 3 00000000000000 6 66 00 444444 88 6666666 4 0 44444 8 0 88 4 0 0 00 88 2 4 0 00 6 0 8 8 0 0 66666666 0 8 8 8 0
consensus : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAA-----------A-TTTTTCGC--------------------C-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATCA-----TTTA-ACAAA-GGAA----AATT---AGCCTTGAAAACGTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTG-TTTTA-T-ATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCGTG-TCGGTCAATTT-CGTA-A--TAACATC----CGTTCTTC--GCTATGAA-TACTNT--CTGCAGATA---CGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATAATACACACTCTTGA-TTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC------CT---ATTAGTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
Reference ( family-3839 ) : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAA-----------A-TTTTTTGN--------------------C-TGANTCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAGTTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATCA-----TTTA-ANAAA-GGAA----AATT---AGCCTTGAAAACGTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTG-TTTTA-T-ATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ACGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCGTG-TCGGTCAATTT-CGTA-AT-TAACATC----CGTTCTTC--GCTATGAA-TACTAT--CTGCAGATA---CGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACANC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAGTT-GTGTTTACCTTA-TTGTTTT--ATAATACACACTCTTGA-TTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC------CT---ATTNGTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-GAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAANACAATT--A-TA--AATA-TACAATATTTCAATATTATTCCGTNTA
gi|1 : TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTT--GTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C------CT---ATTAATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTA
gi|12 : CA-AT-T--CCAGATT--TGT---CA------------GT--GT-GTGCATG-TCGGTCAATTT-CGTA-A-----CATC----CGTTCTTC--ACTATGAA-TACTATACCTGCAGATA---CGGA-ATACAA-TGACCATTACT----GGTTTTT-CTATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCA-TCActaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|13 : GAATT--AAA-----AATAGA--CGGG-------ATATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGTTT-G
gi|13 : TTTTGA-TTGTTT-GATGCGAT-ATT----GAAGTATTTatgcgatattgaagtattt
gi|2 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacatattactgttttttttttagcaA--TG-C---CTTAT-ATCAATCAAAGT---C------------ATT--AAC-----CGTCTATACGGG-------ATATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCATTAAAATATGGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATGATACACACTCTTGA-TTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGACCAGACAATT---ATT-GT-ATATAGAGAATATTGTTTGCATTTGGATAG---TTAC--TTTTGA-----CGATTT-AAGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGT-GAAGT--TTTCTAATTT--GTT--ATTTTAAATGTATAGATCTGT-TAATATTCTATATACTT--ATTA--AAGA-TATAA-ATTTTAATA-TATT-CGTT
gi|3 : AATC--TTGT-AATTACAG---GAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGATAA-------------TTTTTTG---------------------C-TGAATCTTTT-GAAATAAAAAAGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTATAA----AGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AAA--AGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAA----TTTTATAAT-TG-CTAATCA-----TTTA-ACAAA-GGAA----AATT---AGCCTTGAAAACGTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---AAG-------------ATTTA-A------ACCG-T-CGAAAATGATG----TATATATAACT-ATAATTCAGG-TTATT---CTTAATAGTAATTTGTTTTTATT-ATCTCTATTGAT-T--ACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCATG-TCGGTCAATTT-TG------TAACATC----CGTTCTTC--GCTATGAA-TACTTT--CTGCAGATA---C-GA-ATACAA-TGTTCATTACT----GGTTTTT-CTATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TC-AAAT---G-G----GGATGAATT--AAA-----AATAG--ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAGTT-GTGTT---CTTA-TTGTTTT--ATAATACACACTTTTGA-TTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACC------CTTACACT-GTCATA--GAGAATAT--TTTGCATCTGGA-GA---TTACA-TTTT--GACCGCGATGTAAAGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAAAATGA-ATCAAATTTTAATT-AATCT-AAATGTATAGATCTGTAAAATATTTAATACAATTAAA-TAAGAATA-TACGATATTTCAATATTA-TCCGTTTAtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGTACGG---GAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGATA--------------TTTTTCCC--------------------CCTGAATATTTT-GAAATAAAAAAGTTATGCCTCTTTTTTCT--AGAAAATGT-CCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATCA-----TTTA-AGAAA-GGAA----AATT---AGCCTTGAAAACGTATA-A-CG--GA-CA----TTAC----GCGCG--T--GTC-AAAT-A--CGATGG-GT---A-G-------------AATTT-A------AATG-T-CGAAA-TGATGGGGGCATATGTTATTCATGATTCAAGATTAAT---TTTAATAGTA-TTTG-TTTTA-T-----------------ATATC-TAT-TGA--T-----------G--TAG-ACA---TCC---------------A--TC--GC--CA-AT-T--TC----T--GG----CA------------GTTGGT-GTGCGTGGTCGGTCAATTT-CGCA-A---AACATCGATCCGTTCTTC--GCT-TGAA-TACTAT--CTGCATATA---CGGTTATACGA-TGATCATTACTACTTGGTTTTTTCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCA-TCAAAAT---G-GTGGAG--TGAATT--AAATTATAAGTAGA--CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTT--GTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C------CT---ATTAATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTActaa
gi|5 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATC--T-GT-AAT-ACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTTTGCTGAA-TTTTTTGAAATAAAAAAGTNNNNNNNNNN-NNNNNNNNNN-NNNNNGAAAACGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATAGTTTACTACT-GCATATTTTTACTCA-AC-TATTTCAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TT--ATAAT-TG-CTTATCA-----TTTA-ACAAA-GGAA----ATTT---AGCCTTGAAAACGTATA-A-CG--GA-CG----TCAC----ACGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTA-A------AACG-T-TAAAAACGATG----TATATAT--CT-ATAATTCAAGATTATT---CTTGATAGT-ATTTG-TTTTA-T-ATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTATAG--TTA-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCATG-TCGGTCAATTT-CGTACATGTGACATC----CGTTCTTC--GCTATGAA-TACTTT--CTGCAGACA---CGAA-ATACAA-TGATCATTACT----GGTTTTT--TATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT----------G--TGGATT--AAA-----AATAGA-ACGGA-------GTATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATAATACACA-TTTTGA-TTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC------TT---ATCTGTCATA--GAGAATAT--TTTGCATTCGGA-A----TTACA-TTTT--GAC--CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AAC-AAA--GATATC-AAATT--GTTAAATTTAAAATGTAT-GATCTGTAAAATATTTAAAACATTA--A-TA--AATATTATGATATTTCTATATTATACCGTTTActaa
gi|6 : AATCG-T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAA-----------T-TTTTTTTCG-------------------C-TGAATCCTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTATAA----AGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAAA--AGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T---ATAAT-TG-CTA-TCA-----TTTA-ACAAAAGGAA----AATT---AGCCTTTGAAACGTAAA-AGCG--GA-CG----TTACTAACGCGCGGTTCTGTCCAA-T-AATCGATGATGT---T-GCACTACGCGAATTATTCT-ACAAAATAACG-T-TGAAAA--ATG----TATATATAACT-ATAATTCAAGATTATT---CTTGACAGTAATTTG--TTTA-T-ATATCTATTGATATAGACATCACATACGA--TAATATCTTA-AGTTTTA-ATAATCTCTTAACAGA-ACGATTTA--TCAGAC-ACA-ATAT--TC----TGAGGT---CATGATGCTGCGTGGT--GT-GTGCATG-TCGGTCAATTT-C-------TAACATC----CGTTCTTT--GCTATGAA-TACTTT--CTGCAGATA---CGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGTGG-G----A--TGAATT--CAA-----AATAG--ACGGG-------ATATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAGTT-ATGTT--CCTTA-TTGTTTT--ATAATACACACTCTTG----ATTTTGATGC
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT-AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGATAA-----------AATTTTTCGC--------------------C-TGA-TCTTTTAGAAATAAAAAAGT-ATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATATTT-CACT-A-ACGTATGTTAAAGAAGACG--TGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTT--ATAATGTGATTAATCGAACTTCTTATAAAAA-TGAACGACACTTGCAAGACTCGACA--GTATAGA-CGATGATCGAGGTTTTT----GCGTA--GCT-TC-AA-TTA--CG-TGT-GTCATA-G-------------ATTTCGA------AACGGTGCGAAAATGATGAT--TATATATA-CT-TTAAT-CAAGATTATTACGCTTAATAGGATCTTC-GTATA-TTATATCTAATATT-TAGACATC-CAT-CGAATTACT-CCTTA-GG--TAGTATA---TTCTTA-ACATATG-TTTACATC--GCCACAGAT-TCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTA-A---AACATCG---TATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTT-CTATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCA-TCCAAAT---GTG----GAATGAATTTCAAA-----AAT--C-ACGGG-------A
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC
Alignments
lowQualScore : 11 111 222222 11 11 4444444444444444 777777777777777777777777777 11 4444444444 222222 11 1111 11 11 11111111 11 1111 222222 11 1111 1111 11 1 11 111 4444444444444 222222 2222 1 111 11 1 11 11 111 11 1111 11 1111111 111 333333333333 3333333 2222 111 1111 5555555555555 11111 111 1111111 11 1 11 1 11 1 11 1 1 1111 11111111111 111 11 11 333333 11 2222222 2 11111 2 11 2 11 1 22222222
lowQualScore : 99 8 8 0 444 5 333333 11 11 0 8 2222222222222222 999999999999999999999999999 2 8 0 11 8 5555555555 333333 8 11 7777 0 0 5 33 0 8 8 3 11 3 8 66 0 0 99999999 8 8 0 11 0 8 7777 8 333333 8 8 11 8 7777 7777 11 8 6 11 0 8 444 8 4444444444444 99 333333 8 8 44 8888 5 8 0 0 444 66 33 6 0 0 1 1 999 8 8 11 11 8 8 11 1 8 444 11 8 8 5 11 2222 0 6 55 4444444 111 444444444444 99 6 0 6 6 3333333 0000 99 3 6 1 99 111 6 6 4444 6 3 6 77 5 5 5 5 1 2222222222222 77 44444 1 999 8888888 5 55 5 0 1 5 8 11 0 1 88 3 88 6 1 1 6 4444 7 88888888888 777 88 11 111111 55 0000000 0 8 22222 0 8 88 0 8 8 11 8 3 0 6 11 0 6 0 0 1 1 22222222 8 0 0 0 0
lowQualScore : .. . . . ... . ...... .. .. . . ................ ........................... . . . .. . .......... ...... . .. .... . . . .. . . . . .. . . .. . . ........ . . . .. . . .... . ...... . . .. . .... .... .. . . .. . . ... . ............. .. ...... . . .. .... . . . . ... .. .. . . . . . ... . . .. .. . . .. . . ... .. . . . .. .... . . .. ....... ... ............ .. . . . . ....... .... .. . . . .. ... . . .... . . . .. . . . . . ............. .. ..... . ... ....... . .. . . . . . .. . . .. . .. . . . . .... . ........... ... .. .. ...... .. ....... . . ..... . . .. . . . .. . . . . .. . . . . . . ........ . . . . .
lowQualScore : 00 0 0 8 000 6 000000 00 00 8 0 6666666666666666 888888888888888888888888888 8 0 8 00 0 4444444444 000000 0 00 0000 8 8 0 66 8 0 0 8 00 2 0 44 8 8 88888888 0 0 8 00 8 0 0000 0 000000 0 0 00 0 0000 0000 00 0 0 00 8 0 000 0 0000000000000 00 000000 0 0 66 0000 8 0 8 8 000 88 66 0 8 6 0 0 444 0 0 00 44 0 0 00 4 0 000 88 0 0 6 00 2222 8 7 88 3333333 777 222222222222 22 7 7 7 7 3333333 8888 22 2 7 0 22 777 7 7 2222 7 7 7 99 7 7 7 7 4 7777777777777 99 33333 4 111 6666666 7 77 7 6 4 7 7 11 4 4 33 3 33 7 4 4 7 2222 3 00000000000 000 66 00 444444 88 6666666 4 0 44444 8 0 88 4 0 0 00 0 2 4 0 00 6 0 8 8 4 0 66666666 0 8 8 8 6
consensus : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATG-TCCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTA----TAAAGTATGGTTTACTAC-TGCATATTTTCACTCA-AC-TATTTTAA--AAGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-TA--CGATGG-G---TA-G-------------ATTT-NA------AAC-GT-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTG-TTTTATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTA---ATAACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
Reference ( family-3839 ) : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATG-TCCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTA----TAAAGTATGGTTTACTAC-TGCATATTTTCACTCA-AC-TATTTTAA--AAGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-TA--CGATGG-G---TA-G-------------ATTT-NA------AAC-GT-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTG-TTTTA-TATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTA---ATAACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
gi|1 : TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTA
gi|12 : CA-AT--TCCAGATT--TG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTA---A---CATC----CGTTCT--TCACTATG-AATACTATACCTGCAGAT---ACGGA-ATACAA-TGACCATTACT----GGTTTTT-CTATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCA-TCActaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|13 : GAATT--AAA-----AATAGA--CGGG-------ATATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGT-TTG
gi|13 : TTTTG-ATTGTTT-GATGCGAT-ATT----GAAGTATTTatgcgatattgaagtattt
gi|2 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacatattactgttttttttttagcaA--TG-C---CTTAT-ATCAATCAAAGT---C------------ATT--AAC-----CGTCTATACGGG-------ATATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTT-CATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATGATACACACTCTTG-ATTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGACCAGACA---ATTATTGT-ATATAGAGAATATTGTTTGCATTTGGATAG---TTAC--TTTTGA-----CGATTT-AAGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGT-GAAGT--TTTCTAATTT--GTT--ATTTTAAATGTATAGATCTGT-TAATATTCTATATACTT--ATTA--AAGA-TATAA-ATTTTAATA-TATT-CGTTT
gi|3 : AATC--TTGT-AATTACAG---GAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAA--TTTTT--TG--------------------C--TGAATCTTTT-GAAATAAAAAAGTTATACTTCTTTTTTCT--TGAAAATG-TCCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTA----TAAAGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AA--AAGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAA----TTTTATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-TA--CGATGG-G---TAAG-------------ATTT-AA------ACC-GT-CGAAAATGATG----TATATATAACT-ATAATTCAGG-TTATT---CTTAATAGTAATTTGTTTTTATTATCTCTATTGAT-T--ACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTTG------TAACATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAT---AC-GA-ATACAA-TGTTCATTACT----GGTTTTT-CTATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TC-AAAT---G-G----GGATGAATT--AAA-----AATAG--ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAG-TTGTGTT---CTT-ATTGTTTT--ATAATACACACTTTTG-ATTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACC---CTTACACT---GTCATA--GAGAATAT--TTTGCATCTGGA-GA---TTACA-TTTT--GACCGCGATGTAAAGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAAAATGA-ATCAAATTTTAATT-AATCT-AAATGTATAGATCTGTAAAATATTTAATACAATTAAA-TAAGAATA-TACGATATTTCAATATTA-TCCGTTTAtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGTACGG---GAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGA-----------TA---TTTTT--CC--------------------CCCTGAATATTTT-GAAATAAAAAAGTTATGCCTCTTTTTTCT--AGAAAATG-TCCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTA----TAAAGGATGGTTTACTAC-TGCATATTTTCACTCA-AC-TGTTTTAA--AAGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAAGAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CA----TTAC----GCGCG--T--GTC-AAATA--CGATGG-G---TA-G-------------AATT-TA------AAT-GT-CGAAA-TGATGGGGGCATATGTTATTCATGATTCAAGATTAAT---TTTAATAGTA-TTTG-TTTTA-T----------------ATATC-TAT-TGA--T-----------G--TAG-ACA---TCC-----------------ATC--G-C-CA-AT--TTC----T--GG----CA------------GTTGG-TGTGCGTGGTCGGTCAA-TTTCGCA---A-AACATCGATCCGTTCT--TCGCT-TG-AATACTAT--CTGCATAT---ACGGTTATACGA-TGATCATTACTACTTGGTTTTTTCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCA-TCAAAAT---G-GTGGAG--TGAATT--AAATTATAAGTAGA--CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTActaa
gi|5 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATC--T-GT-AAT-ACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTTTGCTGAA-TTTTT--TGAAATAAAAAAGTNNNNNNNNNN-NNNNNNNNNN-NNNNNGAAAACGTTATACTTCTTTTTTCT--TGAAAATG-TCCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTA----TAAAGTATAGTTTACTAC-TGCATATTTTTACTCA-AC-TATTTCAA--AAGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TT--ATAAT-TG-CTTATC--ATTTAACAAA-GGAAATTTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TCAC----ACGCG--TCTGTC-AA-TA--CGATGG-G---TA-G-------------ATTT-AA------AAC-GT-TAAAAACGATG----TATATAT--CT-ATAATTCAAGATTATT---CTTGATAGT-ATTTG-TTTTA-TATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTATAG--TTA-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTACATGTGACATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAC---ACGAA-ATACAA-TGATCATTACT----GGTTTTT--TATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT----------G--TGGATT--AAA-----AATAGA-ACGGA-------GTATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACA-TTTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---TT---ATCT--GTCATA--GAGAATAT--TTTGCATTCGGA-A----TTACA-TTTT--GAC--CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AAC-AAA--GATATC-AAATT--GTTAAATTTAAAATGTAT-GATCTGTAAAATATTTAAAACATTA--A-TA--AATATTATGATATTTCTATATTATACCGTTTActaa
gi|6 : AATCG-T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAT-TTTTTTTCG--------------------C--TGAATCCTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATG-TCCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTA----TAAAGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAA--AAGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T---ATAAT-TG-CTA-TC--ATTTAACAAAAGGAAAATTAGC----CTTT-GAAAC------GTAAA-AGCG--GA-CG----TTACTAACGCGCGGTTCTGTCCAA-TAATCGATGATG---TT-GCACTACGCGAATTATTC-TACAAAATAAC-GT-TGAAAA--ATG----TATATATAACT-ATAATTCAAGATTATT---CTTGACAGTAATTTG--TTTA-TATATCTATTGATATAGACATCACATACGA--TAATATCTTA-AGTTTTA-ATAATCTCTTAACAGA-ACGATTT--ATCAGA-CACA-ATA-TTC----TGAGG---TCATGATGCTGCGTGGT--G-TGTGCATG-TCGGTCAA-TTTC-------TAACATC----CGTTCT--TTGCTATG-AATACTTT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGTGG-G----A--TGAATT--CAA-----AATAG--ACGGG-------ATATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAG-TTATGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG----ATTTTGATGC
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT-AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGA-----------TAAAATTTTT--CG--------------------CC-TG-ATCTTTTAGAAATAAAAAAG-TATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATA-TTTCACT-A-ACGTATGTTAAAGAAGAC--GTGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTT--ATAATGTGATTAATCGAACTT--CTTA-TAAAAATGAACGACACTTGCAAGACTCGACAGTATAGA-CGATGATCGAGGTTTTT----GCGTA--GCT-TC-AATTA--CG-TGT-GTCATA-G-------------ATTTCGA------AACGGTGCGAAAATGATGAT--TATATAT-ACT-TTAA-TCAAGATTATTACGCTTAATAGGATCTTC-GTATATTATATCTAATATT-TAGACATC-CAT-CGAATTACT-CCTTA-GG--TAGTATA---TTCTTA-ACATATG-TTTACATC--GCCACAGATTCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTA---A-AACATCG---TATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTT-CTATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCA-TCCAAAT---GTG----GAATGAATTTCAAA-----AAT--C-ACGGG-------A
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC
Alignments
lowQualScore : 11 111 222222 11 11 4444444444444444 777777777777777777777777777 11 4444444444 222222 11 1111 11 11 11111111 11 1111 222222 11 1111 1111 11 11 5555555555555555555 222222 2222 11 111 2 11 11 111 11 1111 11 1111111 111 333333333333 333333 2222 111 1111 5555555555555 11111 111 1111111 11 1 11 1 11 1 11 1 1 1111 11111111111 111 11 11 333333 11 2222222 2 11111 2 11 2 11 1 22222222
lowQualScore : 99 8 8 0 444 5 333333 11 11 0 8 2222222222222222 999999999999999999999999999 2 8 0 11 8 5555555555 333333 8 11 7777 0 0 5 33 3 8 8 3 11 0 8 66 0 0 99999999 8 8 0 11 0 8 7777 8 333333 8 8 11 8 7777 7777 11 8 8 8 11 0 8 2222222222222222222 99 333333 8 8 44 8888 11 8 0 0 444 66 5 8 0 0 0 1 8 55 8 8 11 11 8 8 11 1 8 444 11 8 8 5 11 2222 0 6 55 4444444 111 444444444444 99 6 0 6 6 444444 0000 99 3 6 1 99 111 3 6 6 4444 6 3 6 77 5 5 5 5 1 2222222222222 77 44444 1 999 8888888 5 55 5 0 1 5 8 11 0 1 88 3 88 6 1 1 6 4444 7 88888888888 777 88 11 111111 55 0000000 0 8 22222 0 8 88 0 8 8 11 8 3 0 6 11 0 6 0 0 1 1 22222222 8 0 0 0 0
lowQualScore : .. . . . ... . ...... .. .. . . ................ ........................... . . . .. . .......... ...... . .. .... . . . .. . . . . .. . . .. . . ........ . . . .. . . .... . ...... . . .. . .... .... .. . . . .. . . ................... .. ...... . . .. .... .. . . . ... .. . . . . . . . .. . . .. .. . . .. . . ... .. . . . .. .... . . .. ....... ... ............ .. . . . . ...... .... .. . . . .. ... . . . .... . . . .. . . . . . ............. .. ..... . ... ....... . .. . . . . . .. . . .. . .. . . . . .... . ........... ... .. .. ...... .. ....... . . ..... . . .. . . . .. . . . . .. . . . . . . ........ . . . . .
lowQualScore : 00 0 0 8 000 6 000000 00 00 8 0 6666666666666666 888888888888888888888888888 8 0 8 00 0 4444444444 000000 0 00 0000 8 8 0 66 8 0 0 8 00 8 0 44 8 8 88888888 0 0 8 00 8 0 0000 0 000000 0 0 00 0 0000 0000 00 0 0 0 00 8 0 2222222222222222222 00 000000 0 0 66 0000 66 0 8 8 000 88 6 0 4 6 8 0 0 66 0 0 00 44 0 0 00 4 0 000 88 0 0 6 00 2222 8 7 88 3333333 777 222222222222 22 7 7 7 7 333333 8888 22 2 7 0 22 777 7 7 7 2222 7 7 7 99 7 7 7 7 4 7777777777777 99 33333 4 111 6666666 7 77 7 6 4 7 7 11 4 4 33 3 33 7 4 4 7 2222 3 00000000000 000 66 00 444444 88 6666666 4 0 44444 8 0 88 4 0 0 00 0 2 4 0 00 6 0 8 8 4 0 66666666 0 8 8 8 6
consensus : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTA---A-AACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
Reference ( family-3839 ) : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTA---ATAACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
gi|1 : TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTA
gi|12 : CA-AT--TCCAGATT--TG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTA---A---CATC----CGTTCT--TCACTATG-AATACTATACCTGCAGAT---ACGGA-ATACAA-TGACCATTACT----GGTTTTT-CTATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCA-TCActaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|13 : GAATT--AAA-----AATAGA--CGGG-------ATATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGT-TTG
gi|13 : TTTTG-ATTGTTT-GATGCGAT-ATT----GAAGTATTTatgcgatattgaagtattt
gi|2 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacatattactgttttttttttagcaA--TG-C---CTTAT-ATCAATCAAAGT---C------------ATT--AAC-----CGTCTATACGGG-------ATATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTT-CATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATGATACACACTCTTG-ATTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGACCAGACA---ATTATTGT-ATATAGAGAATATTGTTTGCATTTGGATAG---TTAC--TTTTGA-----CGATTT-AAGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGT-GAAGT--TTTCTAATTT--GTT--ATTTTAAATGTATAGATCTGT-TAATATTCTATATACTT--ATTA--AAGA-TATAA-ATTTTAATA-TATT-CGTTT
gi|3 : AATC--TTGT-AATTACAG---GAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAA--TTTTT--TG--------------------C--TGAATCTTTT-GAAATAAAAAAGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTATAA----AGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AAA--AGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAA----TTTTATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---AAG-------------ATTTA-A------ACCG-T-CGAAAATGATG----TATATATAACT-ATAATTCAGG-TTATT---CTTAATAGTAATTTGTTTTTATTATCTCTATTGAT-TA--CATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTTGTA---A---CATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAT---ACG-A-ATACAA-TGTTCATTACT----GGTTTTT-CTATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TC-AAAT---G-G----GGATGAATT--AAA-----AATAG--ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAG-TTGTGTT---CTT-ATTGTTTT--ATAATACACACTTTTG-ATTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACC---CTTACACT---GTCATA--GAGAATAT--TTTGCATCTGGA-GA---TTACA-TTTT--GACCGCGATGTAAAGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAAAATGA-ATCAAATTTTAATT-AATCT-AAATGTATAGATCTGTAAAATATTTAATACAATTAAA-TAAGAATA-TACGATATTTCAATATTA-TCCGTTTAtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGTACGG---GAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGA-----------TA---TTTTT--CC--------------------CCCTGAATATTTT-GAAATAAAAAAGTTATGCCTCTTTTTTCT--AGAAAATGT-CCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAAGAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CA----TTAC----GCGCG--T--GTC-AAAT-A--CGATGG-GT---A-G-------------AATTT-A------AATG-T-CGAAA-TGATGGGGGCATATGTTATTCATGATTCAAGATTAAT---TTTAATAGTA-TTTGTTTT-A-------TAT----------ATC-TAT-TGA--T-----------G--TAG-ACA---TCC-----------------ATC--G-C-CA-AT--TTC----T--GG----CA------------GTTGG-TGTGCGTGGTCGGTCAA-TTTCGCA---A-AACATCGATCCGTTCT--TCGCT-TG-AATACTAT--CTGCATAT---ACGGTTATACGA-TGATCATTACTACTTGGTTTTTTCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCA-TCAAAAT---G-GTGGAG--TGAATT--AAATTATAAGTAGA--CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTActaa
gi|5 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATC--T-GT-AAT-ACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTTTGCTGAA-TTTTT--TGAAATAAAAAAGTNNNNNNNNNN-NNNNNNNNNN-NNNNNGAAAACGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATAGTTTACTACT-GCATATTTTTACTCA-AC-TATTTCAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TT--ATAAT-TG-CTTATC--ATTTAACAAA-GGAAATTTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TCAC----ACGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTA-A------AACG-T-TAAAAACGATG----TATATAT--CT-ATAATTCAAGATTATT---CTTGATAGT-ATTTGTTTT-A-TATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTATAG--TTA-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTACATGTGACATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAC---ACGAA-ATACAA-TGATCATTACT----GGTTTTT--TATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT----------G--TGGATT--AAA-----AATAGA-ACGGA-------GTATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACA-TTTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---TT---ATCT--GTCATA--GAGAATAT--TTTGCATTCGGA-A----TTACA-TTTT--GAC--CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AAC-AAA--GATATC-AAATT--GTTAAATTTAAAATGTAT-GATCTGTAAAATATTTAAAACATTA--A-TA--AATATTATGATATTTCTATATTATACCGTTTActaa
gi|6 : AATCG-T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAT-TTTTTTTCG--------------------C--TGAATCCTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTATAA----AGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAAA--AGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T---ATAAT-TG-CTA-TC--ATTTAACAAAAGGAAAATTAGC----CTTT-GAAAC------GTAAA-AGCG--GA-CG----TTACTAACGCGCGGTTCTGTCCAA-T-AATCGATGATGT---T-GCACTACGCGAATTATTCT-ACAAAATAACG-T-TGAAAA--ATG----TATATATAACT-ATAATTCAAGATTATT---CTTGACAGTAATTTG-TTT-A-TATATCTATTGATATAGACATCACATACGA--TAATATCTTA-AGTTTTA-ATAATCTCTTAACAGA-ACGATTT--ATCAGA-CACA-ATA-TTC----TGAGG---TCATGATGCTGCGTGGT--G-TGTGCATG-TCGGTCAA-TTTC-------TAACATC----CGTTCT--TTGCTATG-AATACTTT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGTGG-G----A--TGAATT--CAA-----AATAG--ACGGG-------ATATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAG-TTATGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG----ATTTTGATGC
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT-AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGA-----------TAAAATTTTT--CG--------------------CC-TGA-TCTTTTAGAAATAAAAAAGT-ATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATATTT-CACT-A-ACGTATGTTAAAGAAGACG--TGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTT--ATAATGTGATTAATCGAACTT--CTTA-TAAAAATGAACGACACTTGCAAGACTCGACAGTATAGA-CGATGATCGAGGTTTTT----GCGTA--GCT-TC-AA-TTA--CG-TGT-GTCATA-G-------------ATTTCGA------AACGGTGCGAAAATGATGAT--TATATATA-CT-TTAAT-CAAGATTATTACGCTTAATAGGATCTTCGTAT-ATTATATCTAATATT-TAGACATC-CAT-CGAATTACT-CCTTA-GG--TAGTATA---TTCTTA-ACATATG-TTTACATC--GCCACAGATTCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTA---A-AACATCG---TATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTT-CTATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCA-TCCAAAT---GTG----GAATGAATTTCAAA-----AAT--C-ACGGG-------A
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC
Alignments
lowQualScore : 11 111 222222 11 11 4444444444444444 777777777777777777777777777 11 4444444444 222222 11 1111 11 11 11111111 11 1111 222222 11 1111 1111 11 11 5555555555555555555 222222 2222 11 111 2 11 11 111 11 1111 11 1111111 111 333333333333 2222222 2222 111 1111 5555555555555 11111 111 1111111 11 1 11 1 11 1 11 1 1 1111 11111111111 111 11 11 333333 11 2222222 2 11111 2 11 2 11 1 22222222
lowQualScore : 99 8 8 0 444 5 333333 11 11 0 8 2222222222222222 999999999999999999999999999 2 8 0 11 8 5555555555 333333 8 11 7777 0 0 5 33 3 8 8 3 11 0 8 66 0 0 99999999 8 8 0 11 0 8 7777 8 333333 8 8 11 8 7777 7777 11 8 8 8 11 0 8 2222222222222222222 99 333333 8 8 44 8888 11 8 0 0 444 66 5 8 0 0 0 1 8 55 8 8 11 11 8 8 11 1 8 444 11 8 8 5 11 2222 0 6 55 4444444 111 444444444444 99 6 0 6 6 3333333 0000 99 3 6 1 99 111 3 6 6 4444 6 3 6 77 5 5 5 5 1 2222222222222 77 44444 1 999 8888888 5 55 5 0 1 5 8 11 0 1 88 3 88 6 1 1 6 4444 7 88888888888 777 88 11 111111 55 0000000 0 8 22222 0 8 88 0 8 8 11 8 3 0 6 11 0 6 0 0 1 1 22222222 8 0 0 0 0
lowQualScore : .. . . . ... . ...... .. .. . . ................ ........................... . . . .. . .......... ...... . .. .... . . . .. . . . . .. . . .. . . ........ . . . .. . . .... . ...... . . .. . .... .... .. . . . .. . . ................... .. ...... . . .. .... .. . . . ... .. . . . . . . . .. . . .. .. . . .. . . ... .. . . . .. .... . . .. ....... ... ............ .. . . . . ....... .... .. . . . .. ... . . . .... . . . .. . . . . . ............. .. ..... . ... ....... . .. . . . . . .. . . .. . .. . . . . .... . ........... ... .. .. ...... .. ....... . . ..... . . .. . . . .. . . . . .. . . . . . . ........ . . . . .
lowQualScore : 00 0 0 8 000 6 000000 00 00 8 0 6666666666666666 888888888888888888888888888 8 0 8 00 0 4444444444 000000 0 00 0000 8 8 0 66 8 0 0 8 00 8 0 44 8 8 88888888 0 0 8 00 8 0 0000 0 000000 0 0 00 0 0000 0000 00 0 0 0 00 8 0 2222222222222222222 00 000000 0 0 66 0000 66 0 8 8 000 88 6 0 4 6 8 0 0 66 0 0 00 44 0 0 00 4 0 000 88 0 0 6 00 2222 8 7 88 3333333 777 222222222222 22 7 7 7 7 7777777 8888 22 2 7 0 22 777 7 7 7 2222 7 7 7 99 7 7 7 7 4 7777777777777 99 33333 4 111 6666666 7 77 7 6 4 7 7 11 4 4 33 3 33 7 4 4 7 2222 3 00000000000 000 66 00 444444 88 6666666 4 0 44444 8 0 88 4 0 0 00 0 2 4 0 00 6 0 8 8 4 0 66666666 0 8 8 8 6
consensus : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTAAA----ACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
Reference ( family-3839 ) : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTAAA----ACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
gi|1 : TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTA
gi|12 : CA-AT--TCCAGATT--TG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGT--A----ACATC----CGTTCT--TCACTATG-AATACTATACCTGCAGAT---ACGGA-ATACAA-TGACCATTACT----GGTTTTT-CTATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCA-TCActaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|13 : GAATT--AAA-----AATAGA--CGGG-------ATATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGT-TTG
gi|13 : TTTTG-ATTGTTT-GATGCGAT-ATT----GAAGTATTTatgcgatattgaagtattt
gi|2 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacatattactgttttttttttagcaA--TG-C---CTTAT-ATCAATCAAAGT---C------------ATT--AAC-----CGTCTATACGGG-------ATATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTT-CATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATGATACACACTCTTG-ATTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGACCAGACA---ATTATTGT-ATATAGAGAATATTGTTTGCATTTGGATAG---TTAC--TTTTGA-----CGATTT-AAGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGT-GAAGT--TTTCTAATTT--GTT--ATTTTAAATGTATAGATCTGT-TAATATTCTATATACTT--ATTA--AAGA-TATAA-ATTTTAATA-TATT-CGTTT
gi|3 : AATC--TTGT-AATTACAG---GAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAA--TTTTT--TG--------------------C--TGAATCTTTT-GAAATAAAAAAGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTATAA----AGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AAA--AGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAA----TTTTATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---AAG-------------ATTTA-A------ACCG-T-CGAAAATGATG----TATATATAACT-ATAATTCAGG-TTATT---CTTAATAGTAATTTGTTTTTATTATCTCTATTGAT-TA--CATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTTGTAA------CATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAT---ACG-A-ATACAA-TGTTCATTACT----GGTTTTT-CTATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TC-AAAT---G-G----GGATGAATT--AAA-----AATAG--ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAG-TTGTGTT---CTT-ATTGTTTT--ATAATACACACTTTTG-ATTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACC---CTTACACT---GTCATA--GAGAATAT--TTTGCATCTGGA-GA---TTACA-TTTT--GACCGCGATGTAAAGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAAAATGA-ATCAAATTTTAATT-AATCT-AAATGTATAGATCTGTAAAATATTTAATACAATTAAA-TAAGAATA-TACGATATTTCAATATTA-TCCGTTTAtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGTACGG---GAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGA-----------TA---TTTTT--CC--------------------CCCTGAATATTTT-GAAATAAAAAAGTTATGCCTCTTTTTTCT--AGAAAATGT-CCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAAGAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CA----TTAC----GCGCG--T--GTC-AAAT-A--CGATGG-GT---A-G-------------AATTT-A------AATG-T-CGAAA-TGATGGGGGCATATGTTATTCATGATTCAAGATTAAT---TTTAATAGTA-TTTGTTTT-A-------TAT----------ATC-TAT-TGA--T-----------G--TAG-ACA---TCC-----------------ATC--G-C-CA-AT--TTC----T--GG----CA------------GTTGG-TGTGCGTGGTCGGTCAA-TTTCGCAAA----ACATCGATCCGTTCT--TCGCT-TG-AATACTAT--CTGCATAT---ACGGTTATACGA-TGATCATTACTACTTGGTTTTTTCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCA-TCAAAAT---G-GTGGAG--TGAATT--AAATTATAAGTAGA--CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTActaa
gi|5 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATC--T-GT-AAT-ACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTTTGCTGAA-TTTTT--TGAAATAAAAAAGTNNNNNNNNNN-NNNNNNNNNN-NNNNNGAAAACGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATAGTTTACTACT-GCATATTTTTACTCA-AC-TATTTCAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TT--ATAAT-TG-CTTATC--ATTTAACAAA-GGAAATTTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TCAC----ACGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTA-A------AACG-T-TAAAAACGATG----TATATAT--CT-ATAATTCAAGATTATT---CTTGATAGT-ATTTGTTTT-A-TATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTATAG--TTA-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTACATGTGACATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAC---ACGAA-ATACAA-TGATCATTACT----GGTTTTT--TATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT----------G--TGGATT--AAA-----AATAGA-ACGGA-------GTATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACA-TTTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---TT---ATCT--GTCATA--GAGAATAT--TTTGCATTCGGA-A----TTACA-TTTT--GAC--CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AAC-AAA--GATATC-AAATT--GTTAAATTTAAAATGTAT-GATCTGTAAAATATTTAAAACATTA--A-TA--AATATTATGATATTTCTATATTATACCGTTTActaa
gi|6 : AATCG-T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAT-TTTTTTTCG--------------------C--TGAATCCTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTATAA----AGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAAA--AGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T---ATAAT-TG-CTA-TC--ATTTAACAAAAGGAAAATTAGC----CTTT-GAAAC------GTAAA-AGCG--GA-CG----TTACTAACGCGCGGTTCTGTCCAA-T-AATCGATGATGT---T-GCACTACGCGAATTATTCT-ACAAAATAACG-T-TGAAAA--ATG----TATATATAACT-ATAATTCAAGATTATT---CTTGACAGTAATTTG-TTT-A-TATATCTATTGATATAGACATCACATACGA--TAATATCTTA-AGTTTTA-ATAATCTCTTAACAGA-ACGATTT--ATCAGA-CACA-ATA-TTC----TGAGG---TCATGATGCTGCGTGGT--G-TGTGCATG-TCGGTCAA-TTTC-T--A----ACATC----CGTTCT--TTGCTATG-AATACTTT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGTGG-G----A--TGAATT--CAA-----AATAG--ACGGG-------ATATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAG-TTATGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG----ATTTTGATGC
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT-AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGA-----------TAAAATTTTT--CG--------------------CC-TGA-TCTTTTAGAAATAAAAAAGT-ATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATATTT-CACT-A-ACGTATGTTAAAGAAGACG--TGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTT--ATAATGTGATTAATCGAACTT--CTTA-TAAAAATGAACGACACTTGCAAGACTCGACAGTATAGA-CGATGATCGAGGTTTTT----GCGTA--GCT-TC-AA-TTA--CG-TGT-GTCATA-G-------------ATTTCGA------AACGGTGCGAAAATGATGAT--TATATATA-CT-TTAAT-CAAGATTATTACGCTTAATAGGATCTTCGTAT-ATTATATCTAATATT-TAGACATC-CAT-CGAATTACT-CCTTA-GG--TAGTATA---TTCTTA-ACATATG-TTTACATC--GCCACAGATTCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTAAA----ACATCG---TATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTT-CTATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCA-TCCAAAT---GTG----GAATGAATTTCAAA-----AAT--C-ACGGG-------A
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC
Alignments
lowQualScore : 11 111 222222 11 11 4444444444444444 777777777777777777777777777 11 4444444444 222222 11 1111 11 11 11111111 11 1111 222222 11 1111 1111 11 11 5555555555555555555 222222 2222 11 111 2 11 11 111 11 1111 11 1111111 111 333333333333 2222222 2222 111 1111 5555555555555 11111 111 1111111 11 1 11 1 11 1 11 1 1 1111 11111111111 111 11 11 333333 11 2222222 2 11111 2 11 2 11 1 22222222
lowQualScore : 99 8 8 0 444 5 333333 11 11 0 8 2222222222222222 999999999999999999999999999 2 8 0 11 8 5555555555 333333 8 11 7777 0 0 5 33 3 8 8 3 11 0 8 66 0 0 99999999 8 8 0 11 0 8 7777 8 333333 8 8 11 8 7777 7777 11 8 8 8 11 0 8 2222222222222222222 99 333333 8 8 44 8888 11 8 0 0 444 66 5 8 0 0 0 1 8 55 8 8 11 11 8 8 11 1 8 444 11 8 8 5 11 2222 0 6 55 4444444 111 444444444444 99 6 0 6 6 3333333 0000 99 3 6 1 99 111 3 6 6 4444 6 3 6 77 5 5 5 5 1 2222222222222 77 44444 1 999 8888888 5 55 5 0 1 5 8 11 0 1 88 3 88 6 1 1 6 4444 7 88888888888 777 88 11 111111 55 0000000 0 8 22222 0 8 88 0 8 8 11 8 3 0 6 11 0 6 0 0 1 1 22222222 8 0 0 0 0
lowQualScore : .. . . . ... . ...... .. .. . . ................ ........................... . . . .. . .......... ...... . .. .... . . . .. . . . . .. . . .. . . ........ . . . .. . . .... . ...... . . .. . .... .... .. . . . .. . . ................... .. ...... . . .. .... .. . . . ... .. . . . . . . . .. . . .. .. . . .. . . ... .. . . . .. .... . . .. ....... ... ............ .. . . . . ....... .... .. . . . .. ... . . . .... . . . .. . . . . . ............. .. ..... . ... ....... . .. . . . . . .. . . .. . .. . . . . .... . ........... ... .. .. ...... .. ....... . . ..... . . .. . . . .. . . . . .. . . . . . . ........ . . . . .
lowQualScore : 00 0 0 8 000 6 000000 00 00 8 0 6666666666666666 888888888888888888888888888 8 0 8 00 0 4444444444 000000 0 00 0000 8 8 0 66 8 0 0 8 00 8 0 44 8 8 88888888 0 0 8 00 8 0 0000 0 000000 0 0 00 0 0000 0000 00 0 0 0 00 8 0 2222222222222222222 00 000000 0 0 66 0000 66 0 8 8 000 88 6 0 4 6 8 0 0 66 0 0 00 44 0 0 00 4 0 000 88 0 0 6 00 2222 8 7 88 3333333 777 222222222222 22 7 7 7 7 7777777 8888 22 2 7 0 22 777 7 7 7 2222 7 7 7 99 7 7 7 7 4 7777777777777 99 33333 4 111 6666666 7 77 7 6 4 7 7 11 4 4 33 3 33 7 4 4 7 2222 3 00000000000 000 66 00 444444 88 6666666 4 0 44444 8 0 88 4 0 0 00 0 2 4 0 00 6 0 8 8 4 0 66666666 0 8 8 8 6
consensus : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTAAA----ACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
Reference ( family-3839 ) : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTAAA----ACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
gi|1 : TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTA
gi|12 : CA-AT--TCCAGATT--TG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGT--A----ACATC----CGTTCT--TCACTATG-AATACTATACCTGCAGAT---ACGGA-ATACAA-TGACCATTACT----GGTTTTT-CTATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCA-TCActaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|13 : GAATT--AAA-----AATAGA--CGGG-------ATATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGT-TTG
gi|13 : TTTTG-ATTGTTT-GATGCGAT-ATT----GAAGTATTTatgcgatattgaagtattt
gi|2 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacatattactgttttttttttagcaA--TG-C---CTTAT-ATCAATCAAAGT---C------------ATT--AAC-----CGTCTATACGGG-------ATATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTT-CATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATGATACACACTCTTG-ATTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGACCAGACA---ATTATTGT-ATATAGAGAATATTGTTTGCATTTGGATAG---TTAC--TTTTGA-----CGATTT-AAGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGT-GAAGT--TTTCTAATTT--GTT--ATTTTAAATGTATAGATCTGT-TAATATTCTATATACTT--ATTA--AAGA-TATAA-ATTTTAATA-TATT-CGTTT
gi|3 : AATC--TTGT-AATTACAG---GAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAA--TTTTT--TG--------------------C--TGAATCTTTT-GAAATAAAAAAGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTATAA----AGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AAA--AGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAA----TTTTATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---AAG-------------ATTTA-A------ACCG-T-CGAAAATGATG----TATATATAACT-ATAATTCAGG-TTATT---CTTAATAGTAATTTGTTTTTATTATCTCTATTGAT-TA--CATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTTGTAA------CATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAT---ACG-A-ATACAA-TGTTCATTACT----GGTTTTT-CTATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TC-AAAT---G-G----GGATGAATT--AAA-----AATAG--ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAG-TTGTGTT---CTT-ATTGTTTT--ATAATACACACTTTTG-ATTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACC---CTTACACT---GTCATA--GAGAATAT--TTTGCATCTGGA-GA---TTACA-TTTT--GACCGCGATGTAAAGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAAAATGA-ATCAAATTTTAATT-AATCT-AAATGTATAGATCTGTAAAATATTTAATACAATTAAA-TAAGAATA-TACGATATTTCAATATTA-TCCGTTTAtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGTACGG---GAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGA-----------TA---TTTTT--CC--------------------CCCTGAATATTTT-GAAATAAAAAAGTTATGCCTCTTTTTTCT--AGAAAATGT-CCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAAGAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CA----TTAC----GCGCG--T--GTC-AAAT-A--CGATGG-GT---A-G-------------AATTT-A------AATG-T-CGAAA-TGATGGGGGCATATGTTATTCATGATTCAAGATTAAT---TTTAATAGTA-TTTGTTTT-A-------TAT----------ATC-TAT-TGA--T-----------G--TAG-ACA---TCC-----------------ATC--G-C-CA-AT--TTC----T--GG----CA------------GTTGG-TGTGCGTGGTCGGTCAA-TTTCGCAAA----ACATCGATCCGTTCT--TCGCT-TG-AATACTAT--CTGCATAT---ACGGTTATACGA-TGATCATTACTACTTGGTTTTTTCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCA-TCAAAAT---G-GTGGAG--TGAATT--AAATTATAAGTAGA--CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATT--TGTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGT-AAGCATAC-GGGTGTGAC------ACTTATATGAAATT-GTCG-AACCGTAA-TTA-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTActaa
gi|5 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATC--T-GT-AAT-ACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTTTGCTGAA-TTTTT--TGAAATAAAAAAGTNNNNNNNNNN-NNNNNNNNNN-NNNNNGAAAACGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATAGTTTACTACT-GCATATTTTTACTCA-AC-TATTTCAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TT--ATAAT-TG-CTTATC--ATTTAACAAA-GGAAATTTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TCAC----ACGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTA-A------AACG-T-TAAAAACGATG----TATATAT--CT-ATAATTCAAGATTATT---CTTGATAGT-ATTTGTTTT-A-TATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTATAG--TTA-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCATG-TCGGTCAA-TTTCGTACATGTGACATC----CGTTCT--TCGCTATG-AATACTTT--CTGCAGAC---ACGAA-ATACAA-TGATCATTACT----GGTTTTT--TATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT----------G--TGGATT--AAA-----AATAGA-ACGGA-------GTATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACA-TTTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---TT---ATCT--GTCATA--GAGAATAT--TTTGCATTCGGA-A----TTACA-TTTT--GAC--CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AAC-AAA--GATATC-AAATT--GTTAAATTTAAAATGTAT-GATCTGTAAAATATTTAAAACATTA--A-TA--AATATTATGATATTTCTATATTATACCGTTTActaa
gi|6 : AATCG-T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAT-TTTTTTTCG--------------------C--TGAATCCTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTATAA----AGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAAA--AGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T---ATAAT-TG-CTA-TC--ATTTAACAAAAGGAAAATTAGC----CTTT-GAAAC------GTAAA-AGCG--GA-CG----TTACTAACGCGCGGTTCTGTCCAA-T-AATCGATGATGT---T-GCACTACGCGAATTATTCT-ACAAAATAACG-T-TGAAAA--ATG----TATATATAACT-ATAATTCAAGATTATT---CTTGACAGTAATTTG-TTT-A-TATATCTATTGATATAGACATCACATACGA--TAATATCTTA-AGTTTTA-ATAATCTCTTAACAGA-ACGATTT--ATCAGA-CACA-ATA-TTC----TGAGG---TCATGATGCTGCGTGGT--G-TGTGCATG-TCGGTCAA-TTTC-T--A----ACATC----CGTTCT--TTGCTATG-AATACTTT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGTGG-G----A--TGAATT--CAA-----AATAG--ACGGG-------ATATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAG-TTATGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG----ATTTTGATGC
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT-AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGA-----------TAAAATTTTT--CG--------------------CC-TGA-TCTTTTAGAAATAAAAAAGT-ATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATATTT-CACT-A-ACGTATGTTAAAGAAGACG--TGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTT--ATAATGTGATTAATCGAACTT--CTTA-TAAAAATGAACGACACTTGCAAGACTCGACAGTATAGA-CGATGATCGAGGTTTTT----GCGTA--GCT-TC-AA-TTA--CG-TGT-GTCATA-G-------------ATTTCGA------AACGGTGCGAAAATGATGAT--TATATATA-CT-TTAAT-CAAGATTATTACGCTTAATAGGATCTTCGTAT-ATTATATCTAATATT-TAGACATC-CAT-CGAATTACT-CCTTA-GG--TAGTATA---TTCTTA-ACATATG-TTTACATC--GCCACAGATTCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTAAA----ACATCG---TATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTT-CTATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCA-TCCAAAT---GTG----GAATGAATTTCAAA-----AAT--C-ACGGG-------A
blockSeqs : CT . T CAG T CTGGAT TC AG T TAATTTTTTGCTGAA TGAAATAAAAAAGTNNNNNNNNNN A A GA T ATAGACA CATGTA C AA TTAA C TT T T G T GA C AA GACCTT G A GA A GACA C TCGACA G G AT T AGGT TAAC GT C A T AT T TGCACTACGCGAATT CG CAAAAT G G AC GGGG TA C ACG AA T . T A A GA A A AT AA A T TT A T ATC TA C T A AC AGA G TC TGA TGT TGATGCTGCGTG TG T G T ACATGTG GATC TC A A T . ATC G T C ACTT T T T CA T C A A A GGTGGAG TC TTATA C ATA GAGTAAT C GT G T T A TT T TA A TA C A G C ATTA A ACCAGACA ATT TA TG AGTTT AG GGGACT A G ACATT G AA T T A TC A G T T TA A T T C AAATAAG T
blockSeqs : G . . . T . . . . TAAAA CCCCC N . . . AATTT . . . . C T T . . C . . AA TT . . . . . . . . . . . . . . . . . . . CATAG T . . . AT AT AA . . AT T . . A . GA . . . AA . . . T . . TA . . A . GC . A T . . . . . . AAA G . A . A . . A . . . . C . . . . . . A GTGGGA . . A AA . . . . T . T T . . . . C . G . . A ACCCTTAC A T . TAG A GACCG A . ACATT . A T . . . . A T A . A A T A ATTA .
blockSeqs : . . . . G . . . . TAAT TTCGC A . . . T . . . . A T C . . T . . A TT . . . . . . . . . . . . . . . . . . . AG A . . . T . A . . A G . . T . GA . . . AC . . . T . . TT . . . . G . . T . . . . . . AAA . . A . T . . G . . . . T . . . . . . A GTGGAA . . A CA . . . . . . T T . . . . A . G . . A ACCTT T . . GA A GAC . . ACATT . A . . . . . G . T . . A A A ATA .
blockSeqs : . . . . . . . . . TA CGCC . . . . T . . . . . . . . . T . . . T . . . . . . . . . . . . . . . . . . . AG T . . . A . . . . A . . . . . . . . . . . . . A . . . . . . . G . . T . . . . . . AA . . C . T . . A . . . . C . . . . . . A GGGGA . . A A . . . . . . T A . . . . C . G . . A CCT . . . A . GA . . . . . . . . . . . . . . . . A T AA .
blockSeqs : . . T . . . . . . A . . . . A . . . . . . . . . . . . . . C G . . A A . . . . . . T T . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . .
blockSeqCons : TAAA************ CNCCC********************** T* TT****** AG***************** AC A* GA T****** AA***** ** GTGGGA******* ** ** ** ACCCT****** T* A* ACATT ATA*****
originalCons : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT--CG--------------------CC-TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAATTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTC----T--GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTAAA----ACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAAT---G-G----G--TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
finalCons : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAAA------------TTTTTCNCCC----------------------TGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAATT------ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GTAG-----------------ATTTN-A------AACG-T-CGAAAACGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTA-TTTGTTTT-ATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTT--ATC--G-CACA-AT--TTCT------GG---TCA------------GT--G-TGTGCGTG-TCGGTCAA-TTTCGTAA-----ACATC----CGTTCT--TCGCTATG-AATACTNT--CTGCAGAT---ACGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCA-TCAAAATGTGGGA-------TGAATT--AAA-----AATAGA-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAG-TTGTGTT--CCTT-ATTGTTTT--ATAATACACACTCTTG-ATTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACCCT------ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACA-TTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATTATA-----AATA-TACGATATTTCAATATTATTCCGTTTA
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC
Alignments
lowQualScore : 11 111 222222 11 11 4444444444444444 666666666666666666666666 11 4444444444 222222 11 1111 11 11 11111111 11 1111 222222 11 1111 1111 11 11 5555555555555555555 222222 11 2222 11 111 1 11 2 11 11 111 11 11 1111111 111 333333333333 333333333333 111 1111 11111 11 1111111 11 1 11 1 11 1 11 1 1 1111 11111111111 111 11 11 333333 11 2222222 1 111111 1 11 2 11 1 22222222
lowQualScore : 99 8 8 0 444 5 333333 11 11 0 8 2222222222222222 888888888888888888888888 2 8 0 11 8 5555555555 333333 8 11 7777 0 0 5 33 3 8 8 3 11 0 8 66 0 0 99999999 8 8 0 11 0 8 7777 8 333333 8 8 11 8 7777 7777 11 8 8 8 11 0 8 2222222222222222222 99 333333 8 8 00 8888 11 8 0 0 444 6 8 33 0 0 0 1 999 8 8 11 11 8 8 11 1 8 444 11 8 8 5 11 11 88 6 6 99 4444444 111 444444444444 99 6 0 6 6 777777777777 6 6 99 3 6 1 99 111 6 6 4444 6 3 6 99 6 6 6 3 88 6 99 66666 66 8888888 5 55 5 0 1 5 4 11 0 1 88 3 88 6 1 1 6 4444 7 88888888888 777 88 11 111111 66 0000000 0 0 8 555555 0 8 88 0 0 8 8 11 8 3 0 6 11 0 6 0 0 1 1 22222222 8 0 0 0 0
lowQualScore : .. . . . ... . ...... .. .. . . ................ ........................ . . . .. . .......... ...... . .. .... . . . .. . . . . .. . . .. . . ........ . . . .. . . .... . ...... . . .. . .... .... .. . . . .. . . ................... .. ...... . . .. .... .. . . . ... . . .. . . . . ... . . .. .. . . .. . . ... .. . . . .. .. .. . . .. ....... ... ............ .. . . . . ............ . . .. . . . .. ... . . .... . . . .. . . . . .. . .. ..... .. ....... . .. . . . . . .. . . .. . .. . . . . .... . ........... ... .. .. ...... .. ....... . . . ...... . . .. . . . . .. . . . . .. . . . . . . ........ . . . . .
lowQualScore : 00 0 0 8 000 6 000000 00 00 8 0 6666666666666666 222222222222222222222222 8 0 8 00 0 4444444444 000000 0 00 0000 8 8 0 66 8 0 0 8 00 8 0 44 8 8 88888888 0 0 8 00 8 0 0000 0 000000 0 0 00 0 0000 0000 00 0 0 0 00 8 0 2222222222222222222 00 000000 0 0 44 0000 66 0 8 8 000 0 0 66 4 6 8 0 444 0 0 00 44 0 0 00 4 0 000 88 0 0 6 00 00 88 7 7 22 3333333 777 222222222222 22 7 7 7 7 555555555555 7 7 22 2 7 0 22 777 7 7 2222 7 7 7 22 7 7 7 2 88 4 22 77777 33 6666666 7 77 7 6 4 7 3 11 4 4 33 3 33 7 4 4 7 2222 3 00000000000 000 66 00 444444 88 6666666 8 6 0 666666 8 0 88 8 6 0 0 00 0 2 4 0 00 6 0 8 8 4 0 66666666 0 8 8 8 6
consensus : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT-------------------CGCCCTGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAATGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGTAAT-TTG-TTTTATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCGTG-TCGGTCAATTT-CGTA-----AA----C-ATC-CGTTCTTC--GCTATGAA-TACTNT--CTGCAGATA---CGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCATCAAAATG-TGGGATGAATT--AAA-----AATAGAACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATAATACACACTCTTGA-TTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
Reference ( family-3839 ) : AATC--T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAA-TTTTT-------------------CNCCCTGAATCTTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATTA---T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATGGTTTACTACT-GCATATTTTCACTCA-AC-TATTTTAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTN-A------AACG-T-CGAAAACGATG----TATATATAACT-ATAATTCAAGATTATT---CTTAATAGT-AT-TTG-TTTTATTATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCGTG-TCGGTCAATTT-CGTA-----AA----C-ATC-CGTTCTTC--GCTATGAA-TACTNT--CTGCAGATA---CGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCATCAAAATG-TGGGATGAATT--AAA-----AATAGAACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATGGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATAATACACACTCTTGA-TTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---CT---ATTA--GTCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACA-TTTTGGGACT-CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAGTTTA-TATCTGCTG-A--AAC-AAAGTGATATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A-TA--AATA-TACGATATTTCAATATTATTCCGTTTA
gi|1 : TATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTT--GTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAA-GCATAC-GGGTGTGACAC------TTATATGAAATT-GTCG-AACCGTAATT-A-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTA
gi|12 : CA-AT-T--CCAGATT--TGT---CA------------GT--GT-GTGCATG-TCGGTCAATTT-CGTA-----A-----C-ATC-CGTTCTTC--ACTATGAA-TACTATACCTGCAGATA---CGGA-ATACAA-TGACCATTACT----GGTTTTT-CTATTACTTTTACCACCC-TTA--TG-CTG-CTTAT-ATCATCActaaataaaaattattcttgcaaatcaatttgaattttcacgtttggttgtttatgacatgtagtacttatgcagtgtgtgagggaaggcttgggggatcaaattctatagatctactaaagattgcgaattctgtctgctaaatacatgcaagtcaattatttactgccagactatattacgaacttttgaaattcaatagattgctgttgtatgataggtaaacgtaatgcataccgcatgtcagaacctaatacaacttgataattcccaagttcatctggtgagctggaagaagagcagtaataatagtcattttctttgaatatcttttttaaatatcgatgttggctattaaatgtaattgggggggccggggggactacaatgacgtcctgctatatagcctatcatgaagataccatgtgcagagtgctgttcaatagggtagatgcgggaatcgcaggtcctccgctgaggagactggtgcaaacagaatctatagcttactagacatagtttttcaattcttattttgttttatttttagggatgtatcgaatgtcgaatgtccaagctgcagatgtagggaaatgcaacttcgatgcctcataccctacgctaccttggtaaatatgagagcactgagagtataatcttgattaaacatctcggagtactactcagcttttgggtgatttttgaaacaaacgattattacaacacttgaaattcatttaggcataccggtagctcccttactcatctgaaactattgttgatattgcatgccagataacatgacttaccatgtggaatgctgcgaggaacccagacagtggcactctgacactgctgttagtgcacttgatgtaaaccaaacacggtattaggaatatatatacctaacttgcccctacctagcacagtgtctactacgggaatttttttttaacaaagcgaatctttaaaagcctatatgaatactagagagtctttcacctacaacactagcgtaaaacgcattactcccggctaaactgcagagctctttcactctacacatataacgtgactaccttgtcaatgtaaaagctccacctagcacataaacgattgactgtgaatgcagatgctctcacctactacaca
gi|13 : GAATT--AAA-----AATAGA-CGGG-------ATATGGGAAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGACAT----ATTACTGTTTT--TTTT--TTAGCATTTTGATTGTTT-G
gi|13 : TTTTGA-TTGTTT-GATGCGAT-ATT----GAAGTATTTatgcgatattgaagtattt
gi|2 : gaattaaaaatagacgggatatgggaaagattgtattgtcggtcaacatcttttgaaaaataactgacgtcacacaaacaatgacatattactgttttttttttagcaACGGG-------ATATGGGGACGAT-TGTATTG--TC-GGTCAACACC-TTTTGAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTT-CATTAAAATATGGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATGATACACACTCTTGA-TTATATT-ATGCGAT-ATT----GAAGTATTTGTCTGTGACCAGACA---ATTATTGT-ATATAGAGAATATTGTTTGCATTTGGATAG---TTAC--TTTTGA-----CGATTT-AAGCATAC-GGTTGTGA-ACATTGATTTAT-TGAAATTGGTCGAAAACGTAGTTTATTATCTG-TG-ATCAGT-GAAGT--TTTCTAATTT--GTT--ATTTTAAATGTATAGATCTGT-TAATATTCTATATACTT--ATTA--AAGA-TATAA-ATTTTAATA-TATT-CGTTT
gi|3 : atgccttatatcaatcaaagtcattaaccgtctatAATC--TTGT-AATTACAG---GAATTTGCATTTC------ATTATTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAA--TTTTT-------------------TGC--TGAATCTTTT-GAAATAAAAAAGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAAACCATAT--GTCAACAATGCATATTTATAA----AGT-TGGTTTACTAC--GCATATTTTCACTCA-AC-TATTT-AAA--AGAAGAGTGTATTAAT-TACAATTTTTGCAATTAATAA----TTTTATAAT-TG-CTAATC--ATTTAACAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TTAC----GCGCG--TCTGTC-AA-T-A--CGATGG-GT---AAG-------------ATTTA-A------ACCG-T-CGAAAATGATG----TATATATAACT-ATAATTCAGG-TTATT---CTTAATAGTAAT-TTGTTTTTATTATCTCTATTGAT-T--ACATC-CAT-CGA--TAAT-TCTTA-AG--TTG-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCATG-TCGGTCAATTT-TGT------AA----C-ATC-CGTTCTTC--GCTATGAA-TACTTT--CTGCAGATA---C-GA-ATACAA-TGTTCATTACT----GGTTTTT-CTATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCATC-AAATG--GGGATGAATT--AAA-----AATAG-ACGGG-------ATATGGGGAAGAT-TGTATTG--TC-GGTCAACATCTTTT-GAAAAATAACTGACGTCACACAAACAATGCAAAATAGATTTCTGTCCTATTTTTCATT-AAATATAGATTAGTT-GTGTT---CTTA-TTGTTTT--ATAATACACACTTTTGA-TTA--TTGATGCGATCATTATTAGAAGTATTGCTCT-TGACC---CTTACACT---GTCATA--GAGAATAT--TTTGCATCTGGA-GA---TTACA-TTTT--GACCGCGATGTAAAGCATACGGGGTGTGACACATTGACTTATATGAAATT-GTCG--ACCGTAGTTTA-TATCTGCTGAA--AACAAAAATGA-ATCAAATTTTAATT-AATCT-AAATGTATAGATCTGTAAAATATTTAATACAATTAAA-TAAGAATA-TACGATATTTCAATATTA-TCCGTTTAtatctaaattcaaatttagtacttgcaatactttgaagttttcacgtttggttgttttattgactgtagtatgccagtgttgtaggggggtaggggataattcctatagatctctaagaatgggattgctgttgtaaatgaaagtcagtttatttctgccagagtatattacagaatttttgaatttaattagatttgctgttgtattgatgaggttaatgacgcatgatagacaataattattcaagtttcatctggtgatgctgaagaagaatatatattatgaatttattagagtatttttctttgagtttttttttaattattgtggcatatagcttatatgggtggggggaccaaacttgtgtctacgtgcatgagtttgatactgcttcagagtgtggtgttcaattaggtgatgcggggatgcaggttcacatgaggagactgggaacaggaattttatacttatagtatggtttcattcttaatatttttaaggggattgatcaatgtcgaagtgtcagcggtgcgatgtagtagagtgcagacttcgatgcataggatttaataagttcaagttatgtataagtgaatacataatgattctttacaacttcgtatatgattctgtgtttttgaattaaaattattagcagtttagattcgtttagcgatacgtggtagccttatattgaattgtatgatattgatgcaacactgctctatgtggatgtagaagacaacaagtgcccgcatgacgattgtctgttaaggtgcactggattaacag
gi|4 : caaagatcagctaaatggaaacattaacgtccgtcacttttgaatttaaatcttgaaaaacataAATC--T-CTTAAGTACGG---GAATT-GTATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATTGA-----------TA---TTTTT-------------------CCCCCTGAATATTTT-GAAATAAAAAAGTTATGCCTCTTTTTTCT--AGAAAATGT-CCACAATTAATTT-----GCGAATGCTTATACATGTAA-GAGGTTTTTCAACCCTTGT--GTCAGCAATGCAGTTTTATAA----AGGATGGTTTACTACT-GCATATTTTCACTCA-AC-TGTTTTAAA--AGACAAGTGTATTAAT-TACAATTTTAGCAATTAATAA----TT--ATAAT-TG-CTAATC--ATTTAAGAAA-GGAAAATTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CA----TTAC----GCGCG--T--GTC-AAAT-A--CGATGG-GT---A-G-------------AATTT-A------AATG-T-CGAAA-TGATGGGGGCATATGTTATTCATGATTCAAGATTAAT---TTTAATAGT-AT-TTG-TTTTA-------TAT----------ATC-TAT-TGA--T-----------G--TAG-ACA---TCC---------------A--TC--GC--CA-AT-T--TC----T--GG----CA------------GTTGGT-GTGCGTGGTCGGTCAATTT-CGCA-----AAACATCGATC-CGTTCTTC--GCT-TGAA-TACTAT--CTGCATATA---CGGTTATACGA-TGATCATTACTACTTGGTTTTTTCTATCACTTTTTCGACCC-TTACATG-CTG-CTTAT-ATCATCAAAATGGTGGAGTGAATT--AAATTATAAGTAGA-CGGGGAGTAATATATGGGGAAGAT-TGTATTGGTCC-GGTCAACAAT-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTT--GTCCTA-ATTTCATTAAAATATGGATTCGTTTGTGTTTACCTTAATTGTTTTTAATAATACACAATCTTGAATTATTCT-ATGCGAT-ATT----G--GTATTTGTCTGTG--C---CT---ATTA--ATCATAT-GAGAATAT--TTTGCATTCGGA-AGTTTTTACAGTTTTGGGACT-CGATGTAA-GCATAC-GGGTGTGACAC------TTATATGAAATT-GTCG-AACCGTAATT-A-TATCTGCTG-A--AAC-AAAGTGA-ATCTAATTT--GTTAAATTTAAAATGTATAGATCTGTAAAATATTTAAAACAATT--A--A--AATA-TACAATATTTCAATATTATTCCGTGTActaa
gi|5 : ggcaaagatcagctaaatgccgtcacatttgaaattaaaatcttgagaaaaataAATC--T-GT-AAT-ACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGATAATTTTTTGCTGAA-TTTTTTGAAATAAAAAAGTNNNNNNNNNNNNNNNNNNNN-NNNNNGAAAACGTTATACTTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGCAATTTTATAA----AGTATAGTTTACTACT-GCATATTTTTACTCA-AC-TATTTCAAA--AGACGAGTGTATTAAT-TACAATTTTAGCAATTAACAA----TT--ATAAT-TG-CTTATC--ATTTAACAAA-GGAAATTTAGC----CTTG-AAAAC------GTATA-A-CG--GA-CG----TCAC----ACGCG--TCTGTC-AA-T-A--CGATGG-GT---A-G-------------ATTTA-A------AACG-T-TAAAAACGATG----TATATAT--CT-ATAATTCAAGATTATT---CTTGATAGT-AT-TTG-TTTTA-TATATCTATTGAT-TAGACATC-CAT-CGA--TAAT-TCTTATAG--TTA-ATA---TCTTAA-ACA-ATGATTTA--TC--GC-ACA-AT-T--TC----T--GGT---CA------------GT--GT-GTGCATG-TCGGTCAATTT-CGTACATGTGA----C-ATC-CGTTCTTC--GCTATGAA-TACTTT--CTGCAGACA---CGAA-ATACAA-TGATCATTACT----GGTTTTT--TATTACTTTTATTACCC-TTA--TG-CTG-CTTAT-GTCATCAAAATG-TGG-----ATT--AAA-----AATAGAACGGA-------GTATGGGAAAGAT-TGTATTG--TC-GGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA-TTTTCATTAAAATATAGATTAGTT-GTGTT--CCTTA-TTGTTTT--ATAATACACA-TTTTGA-TTATTTTGATGCGAT-ATT----GAAGTATTTGTCTGTGACC---TT---ATCT--GTCATA--GAGAATAT--TTTGCATTCGGA-A----TTACA-TTTT--GAC--CGATGTAAAGCATAC-GGGTGTGACACATTGACTTATATGAAATT-GTCG-AACCGTAG-TTA-TATCTGCTG-A--AAC-AAA--GATATC-AAATT--GTTAAATTTAAAATGTAT-GATCTGTAAAATATTTAAAACATTA--A-TA--AATATTATGATATTTCTATATTATACCGTTTActaa
gi|6 : AATCG-T-GT-AATTACAG---GAATTTGCATTTC------ATTCTTTT--ATGG--TATAAATACAT-AGCATAGA-----------TAAT-TTTTT-------------------TTCGCTGAATCCTTT-GAAATAAAAAAGTTATACCTCTTTTTTCT--TGAAAATGT-CCACAATT----T-----GCGCATGCTTATA------A-GAGGTTTTTCAACCCATGT--GTCAACAATGTAATTTTATAA----AGTATGGT--AATA-------ATTTCAACTCATCC-TATTTTAAA--AGACGAGTGTATTAAT-TACA-TTTTAGCAATTA-TAA----T---ATAAT-TG-CTA-TC--ATTTAACAAAAGGAAAATTAGC----CTTT-GAAAC------GTAAA-AGCG--GA-CG----TTACTAACGCGCGGTTCTGTCCAA-T-AATCGATGATGT---T-GCACTACGCGAATTATTCT-ACAAAATAACG-T-TGAAAA--ATG----TATATATAACT-ATAATTCAAGATTATT---CTTGACAGTAAT-TTG--TTTA-TATATCTATTGATATAGACATCACATACGA--TAATATCTTA-AGTTTTA-ATAATCTCTTAACAGA-ACGATTTA--TCAGAC-ACA-ATAT--TC----TGAGGT---CATGATGCTGCGTGGT--GT-GTGCATG-TCGGTCAATTT-C-T------AA----C-ATC-CGTTCTTT--GCTATGAA-TACTTT--CTGCAGATA---CGGA-ATACAA-TGATCATTACT----GGTTTTT-CTATTACTTTTACTACCC-TTA--TG-CTG-CTTAT-GTCATCAAAATG-TGGGATGAATT--CAA-----AATAG-ACGGG-------ATATGGGGAAGATCTGT-TTG--TCGGGTCAACATC-TTT-GAAAAATAACTGACGTCACACAAACAATGACATATAGATTTCTGTCCTA--TTTCA-TAAAATATAGATAAGTT-ATGTT--CCTTA-TTGTTTT--ATAATACACACTCTTG----ATTTTGATGC
gi|7 : gcaaagatcagctaaatggaaacattaacgtccgtcacttttgaaattaaaatcttgaaaaaaataAATCCTT-GT-AATTACAGCAGGAATTGCCATTTCCTGGATATCCTTTTTCATGGAGCATAAA-ACATTAGCATAGA-----------TAAAATTTTT-------------------CGCC-TGA-TCTTTTAGAAATAAAAAAGT-ATATCT-TTTTTTCTGATGGAACTATTCCACAATTA---TAGACAGCGCATG--TATA------ACGAGGTTTTTCAACCCATCTAAGTCAACAATGCAATTTTATAATTAAAGTATGGTTTA-TACTTGCATATTT-CACT-A-ACGTATGTTAAAGAAGACG--TGTTTCAGTCTAC--TCGTGG-GAT--ACGAGACCTT--ATAATGTGATTAATCGAACTT--CTTA-TAAAAATGAACGACACTTGCAAGACTCGACAGTATAGA-CGATGATCGAGGTTTTT----GCGTA--GCT-TC-AA-TTA--CG-TGT-GTCATA-G-------------ATTTCGA------AACGGTGCGAAAATGATGAT--TATATATA-CT-TTAAT-CAAGATTATTACGCTTAATAGG-ATCTTC-GTATATTATATCTAATATT-TAGACATC-CAT-CGAATTACT-CCTTA-GG--TAGTATA---TTCTTA-ACATATG-TTTACATC--GCCACAGAT-TCTTC----T--GATGTTCA------------GT--GTTGTG-GTG-TCGTTCAATTTTCGTA-----AAA---C-ATCGTATTTTTCTCGCACTGAAATACTAT---TG-AGATATCACGAA-CTACAACTGAT-ACTACT----AGTTTTT-CTATTACTTTTA-TACCCTTTA--TGTCTGCCTTATAGTCATCCAAATG-TGGAATGAATTTCAAA-----AAT--CACGGG-------A
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTTACTGCCAGACGAAGTATAACTATATAACAACTTTGAAATTTCAAATAGATTGCTGTTGTATGATAGGTAAGTATACGCATGTCGAGACCTAATAATCTTGATAATTCAAGTCATCTGGTGATGCTGAAGAGAAAGAACATATATATATAATGAAATTATTATAGTCATTTTTCTTATTGATTCTTTTTATTATCATATGGCATTACATATTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGACACAACAACCTGAATACTGACTGCATATTGAGATACATGCTCAGAGTGTGTTCAATAGGAGATGCGGGAATGCAGGACCTTCACGCTGAGGAGACTGGTGCAACAGGATCTTATACTTACTAGTACAAGTTTTTCATTCTTATATTTTTAGGGATGAATCAATGTCGAATGTCAGCTGCAGATGTAGGAAATGCAGACTTCGATGCATCATTACCTTAATCGAACTTTGTAAATAACACCAATGATCTTTACACTCGTATTACTCTTCTGGTATTTTGAAACAAAATTATTAAGCATTTTAAATTCATTTAGCATACTGGTAAGCCCTTATCATCTGTACTTTGTCTGATGTTGATGCAAAACAACTTCATGTGAATGCTGAGAACCAAATGCACACTGACATGCCTGTTGGTGCATTGATCTAACAAACACGAAATATATATACCTAACTGCCC
Unaligned ( gi|9 ): TCTGCCATATTGAGACACATTGCTCAAGTGTGCTTCAATAGCCAATAGGAGATGCGGGAATGCATGCAGGTCCTTCACTGAGGAGACTGCTGCAACAGGAACCTTATAATTATAGGACAAGTTTTCATTTTTATTTTTGCAGGGATGATCAATGTCGAATGTCAGACTGCAGATGTAGGAATGCAGACTTCGATGCATCATTACCTACTCCAACTTTGTAAATAACCCAATGATCTTTACACTCGTATTACTTCTGTGATTTTGAAACAAATTATTAAGCATTTTAAATTCATTTAGCAAACTGGTAAGCCTTATCATCTGAACTTTGTCTGATATTGATGCAACAACTTCATGTGAATGCTGAGACCAACAATGCACACTGACGTGCCTGGTAGTGCACTGATCTAACAAACACGAATGTATATATACCTAACTGCCCT
Unaligned ( gi|10 ): TACTGCCATATTGAGAACATGCTCAGGTGTGTCAATAGGAGATGCGGGAATGCATGCCAGGTCCTTCTGAGGAGACTGGTGCAAACAGGAACTTATAATTACTAGTACAAGTTTTCATTCTTATTTTTTCAGGGATGATCAATGTCGAATGTCAGCTCACAGATGTAGAAATGCAGACTTCGATGCATCATTAACCTCTCCAACTTTGTAAATAACCAATGATTCTTACACTCGTATTACTTCTGTGATTTTGAACAATTATTAAGCATTTTAAATTCATAGCATACTGGTAAGCCCTTATCATCTGAACTTTGTCTGATATTGATGCAAAACAACTTCATGTGAATGCTGAGAACCCAACAATGCACACTGACGTGCCTGTTAGTGCACTGATCTAACAACACGATAATATATACCTAACTGCCC
Unaligned ( gi|11 ): CTACACACAAACGATTTACCTATGAATGCAGAGCTCTCACCTACACACAACGATTTACCGTCATTGCAGAGCTCTCACCTACACACAACGACTTACTGTCAATGTAAAGCTCTCACCTACACCACACGTTTACCTGTGAATGCAGAGCTCTCACTACCTACACATTATA
Unaligned ( gi|14 ): TACATATGTATGAATTATCTATATTCCTTTTTTGATTATTTATTCATTATGAGACCAACAAATATATAAAAATTTGTTGGGGGGGGCGCGGCGGGAGGGGTCCGGGAGGGTGGAGAGGGGGCGGGGGGGGG
Unaligned ( gi|15 ): GTAAATTATTATAAAAGGCAGAAATATATTATTCAAAGTATTTATAGAAGTTCTCAGT
Unaligned ( gi|16 ): TAAAACATGACATTAATGAATACAAAGGTTAACTTTATTATAAGTTTGAAATAT
Unaligned ( gi|17 ): AATTACTAGTACTTTCAATCTTATTTCCTCAGGGATGATCAAT
Unaligned ( gi|18 ): GGCAAAGATCAACTAAATGGAAACATTAACGTCCGTCACTTT
Unaligned ( gi|19 ): TCTAACAAACACGAATGTATATATACCTTAACTGCCCT
Unaligned ( gi|20 ): TAATGAGATACAGGGGCGGATCCAGGAATTNCCA
Unaligned ( gi|21 ): TACCTATACACAATGATTTACCTGTGAATGCAGA
Unaligned ( gi|22 ): GGCAAAGATCAGCTAAATGGAAACATTAAC