lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1111 1 1111 11 11 11111 111 11111 1111111 111111111 1111111 222222 11 11111 2222 111 1111 22 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 2 444444444 4 1 11 444444444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 777777777777777 1 7777777 1 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222 33333 1 333 1 222 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 111 88888888888888888888888888888 2 1 1 4444444 1 22222 333333333 4 888888888888 4444 11
lowQualScore : 4 4 4 0000 666 0 4 4 0000 4 88 4 4 44 4 00000 444 6 4 4 11111 4 777 4 5555555 6 3 888888888 999 4 4 6666666 4 666666 33 66666 3 6 0000 1 555 4444 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 4 2 0 44 11 3 222222222 0 3 99 999999999 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333333333 5 2 6666666 0 4 77777777777777777777777777777777777777777777777777777777777777777777777777777777 444444444 22222 0 111 3 222 5 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 333 22222222222222222222222222222 8 3 5 3 1111111 3 999 1 11111 6 444444444 0 777777777777 4444 44 7
lowQualScore : . . . .... ... . . . .... . .. . . .. . ..... ... . . . ..... . ... . ....... . . ......... ... . . ....... . ...... .. ..... . . .... . ... .... .. ..................................................................................................................................................... . . . . .. .. . ......... . . .. ......... ............................................................................................................................................... ............... . . ....... . . ................................................................................ ......... ..... . ... . ... . ..................................................................................................................................................... . ... ............................. . . . . ....... . ... . ..... . ......... . ............ .... .. .
lowQualScore : 4 0 0 3333 444 2 0 0 1111 0 11 0 0 77 4 00000 000 6 0 0 44444 0 666 0 7777777 4 2 000000000 444 0 0 3333333 4 777777 44 66666 9 7 5555 0 000 2222 22 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 2 5 2 88 55 0 000000000 0 3 55 555555555 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222 0 5 5555555 0 5 88888888888888888888888888888888888888888888888888888888888888888888888888888888 888888888 00000 0 888 3 000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 333 77777777777777777777777777777 3 7 3 3 0000000 3 777 0 00000 0 000000000 0 000000000000 0000 77 0
consensus : GAACA-AGGTA-CGTT-TTT---GGC--CGAANTAT-GCCG-CG--NTT-TTAAAC-T-CCA-TAAAA-CTTAA-----TTGGN-TTNAAA-GCC-TAGGATCT--GCACAA-T--TCAA-CGG------TATATAATTT-A-TAT--ATGTATAT-TTA-GATTAA-CAA---AT-AAAAAT---TCTACG-CTGAAAACGGC-GGCCTTATAT-ACGCCAAGCGTCN-TTTTT----TTTCCAACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTCGT-A--CGTT----ATTG------AAA-C-AGATTTACTACGTT-----TGCTAC-TG--ATAT-TA-C-GAGTTTACATC-ATCTAGAGAACTAACTTGAAGTAGA-TACGAAATGAAATAGACAAACCTCG-CG---A-TAATTTAT-ACA-ACACTGANTAAGAGTCGCA-TTTTTAAG-CTNGGTTATANGNATTT----AAGAAT-A-TGGTGACGTTTTTNTGTTC--ATCCCGAA--CTAATTG-AAGG----TTAAAGNGCTATACAGTGGGACTATNNTNACANTCGCCAANTNACA-G-TCA-GNTATTGAAT--ATTATTTCTAAAGAAGTG--GACAGGG------CGTTGTCTACACCCTAACGT-CGCCAATCCAC-TTTTATTTAAAGACGAT-TAT----ATCTAG-TA------GCCGATGCTTTCACTTCG-TC--GAATACG---------------CA-TTACA---GTA--CCAGAACGT-TGCT-GAAATTATATGTACATAATCA-TGTCATTATGTA-G-TAC-GGCGTTTG-TGTT----AT-NA----------ACATG--TT-ATTAAAG-TGC-ATCTTTAAAA-TTCTCGG-GAG-G----G-GGGGGGCG-T-GGAATCATTTTGTGAT--AA--A----GTCGTT-G-GATG-T-----------------GTTGCAATTCTTTTT-TCATTAAAA-TGTT--CT-ATA-----GTAGTTTTA--TTAAC-TT-CGAGC-ACAC-TT---TTCTCATCCAC-GACCTCTTTTTTTCCTTTTATAATA--AAA--TAGCCA-TTTTCTTA-----ATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACAGATTATTAAT
Reference ( gi|1 ) : GAACA-AGGTA-CGTT-TTT---GGC--TGAATTAT-GCCG-CG--CTT-TTAAAG-T-CCA-TCGAA-CTTAA-----TTGGC-TTCAAA-GCC-TAGGATTT--GCACAA-T--CCAA-CGG------TATATAATTC-A-TAT--ATGTGTAT-TTA-GATTAA-GAA---AT-AAATAT---TCTACG-TTGAAAACAGC-GGCCTTATAT-ATACCAAGCGTCA-TTTTT----TTTCGAACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTCATGA--CGTT----ATT-------AAA-T-ACATTTACCACGTT-----TGCTACTTATAATATCTAAC-GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCTCT-CG---A-TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT-ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGGTCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-G-------CGTTGTATACACCCTAATTTTCCCCAATCCAC-TTCTATTTAAAGACGAT-TATATG-ATTTAGCTA------GCCGATGCTTCCATTTCG-TC--GAAT------------------CA-TTACA---GTA--CCAGAATTG-TGCT-GAAATTATATGTACATAATCA-TGTCATTATGTA-G-TACCGGCGTTTG-TGTTT---ATAAA----------ACTTG--TTCATTAAAGCTGCTATCTTTAAAAATTCTCGGTGAGGGCGGCG-GGAGGGCGGT-GGAATCATTTTGTGAT--AATCA----GTCATT-G-GATGTT-----------------GTTGCAATTTTTTTTATCATTAAAACTGTT--AT-ATAT---TATAGTTTTGATTTATCTTTTCAAGC-ACACTTTTCCTTCTCATCCAC-GACTTTTTTTTTTCTTTTTATGATA--AAA--GAGCCATTTTTCTTA-----AT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|14 : GAACA-AGGTA-CGTT-TTT---GAC--CGAATTAT-GCCG-TG--CTT-TTAAAC-T-CCA-TAAAA-CTTAA-----TTGGC-TTGAAA-GCC-TAGGATTT--GCACAA-T--CCAA-CGATAGATCTATATAATTC-A-TAC--GTGTGTAT-TTA-GATTA
gi|8 : GAACA-AGGTA-CGAT-TTT---GGC--CAAATTTT-GCTG-CC--CTT-TAAAAC-T-CCA-TAAAT-CTCAC-----TTGTG-TGAAAA-GCC-TA---------------------A-TGG------TTTAAAATTTGA-T-T--ATGTATAT-TTAAGATTAA-CTA---TC-AAAACT---TCTACG-CTGAAAACGGC-GACCTAAAAT-ACA--AAGTGTAC-TTTTT----TCCCCAACCCGACGT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGT--TAAAATAT-GTCA-CG--TTC-TTAAAC-T-CCT-TCAAT-TTTAAAGGGGTTGGG-TTGAAA-GCC-TGGTATAT--ACACTA-T--TCAA-TGG------TATAAAATT--------------TAT-CTA-----AG-GAA---AT-AAAACT---TCCACG-CTGAAAAC
gi|21 : tGAATA-AGGTA-TGTT-TTT---GGC--CGAACTAT-GTGA-TT--TTT-TTAAAC-G-CCA-Tgtgga
gi|2 : AACA-AGGTA-CGTT-TT----GGC--TGAATTAT-GCCG-CG--ACT-TTAAAC-T-CCA-TCCAA-CTTAA-----TTGGCTTTCAAA-GCCATAGGATTT--CTACAA-CAATCAA-CGG------TATATAATTC-ACTAC--ATATGTATGTTA-GATTAAGGAA---AT-AAATAT---TCTACGTTTGAAAACAGCGGGCCTTATAT-ATACCAAGCGTCATTTTTT----TTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTCATCA--CGTT----ATTAATTGTAAAA-TAAGATTTACCACGTT-----TGCTACATATATGAT-TATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACG---ATTAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT-----AAAATAAATGGTGACGCTCTTaaa
gi|5 : AACACGGGTA-CGTT-TTA---GCC--TCAAATAT-GCCT-TT--GTT-TTAAAC-T-TAA-TAAAAACTTAA-----CTA-C-GTTAAATGTC-TAGAATCT--GCACAA-T--CTAA-TGG------TGTATAATTT-A-TTT--ATGT-TAT-TCA-GATTTA-CAA---ATAAAACATAGATCTACA----------------CTTATTTCATTTC--GCGTCG-CTTTT----TGT--AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTCAT------TT----GTA-------AAATT-AGATTTATTATATT-----Ttaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|13 : AACA-AGGTA-CGTT-TTG---GGC--GGAA-TATCGCCGCCGATCTTGTTAAAC-TCCCATTCAAA-CTTAA-----TTGGC-TTC-AA-GCC--AGGATTTAGACACAATT--CCAA-CGatcatgtatttgg
gi|12 : CA-AGACA-CATT-TTT---GGC--CGCGATAT-GCTG-CA--TTT-TAAAAC-T-CCA-TAAAA-CTTAA-----CTGTA-CTGAAA-GCC-TAAGATCG--CCATAA-T--TCAA-TGT------T-T---ATTT-A-TTC--ATGTATAT-TTA-GATTGA-CAATTTAA-AAAAAT---TCCAtaggataacttcccaacaccatttattcttagtaagg
gi|16 : A-AGGCAACATT-TTTATTGGCGATGA--TAT-GCCG-CA--ATT-CTAAAC-T-CCA-T-AAA-CTTAA-----TTTTA-TTCAGT-ACA-TAAGATCT--GCACAA-T--TAAATCGT------TATCT-ATTG-A-TAT--At
gi|11 : TA-CGTTGTTT---AGC--CGAAATAT-GCGC-CG--TTT-TTAAAACT-CCA-AAGAT-CTTAA-----CTGGG-T--AAA-ATC-T-GGATT---GTA-AA-T--TCAA-TGG------TATAT----------T--AT-----T-TTA-GATTAATG-----AT-AAA-A----TCTACG-CTGAGAAC-GC--GCCTTATA
gi|9 : aagacaaattTAA-----TGGG--TTGAAA-GCC-AAATGTCT--TCACCA-T--TCAG-CA-------T-TATAAT---A-TATCAATGTATAT-CTA-CTTTAA-CAA---AT-AAAAAT---TCTACG-CTGAAAACTGC-AGACTCATAT-A-GGCAAAC------TTTTAAAATTCCTAAACCAACATCAT---------A----A---CAAG----TT-CC------ATcgca
gi|20 : ATAATTT-A-TTT--ACGTAAAT-TTA-GATTAA-CAA---TT-AAA-A-----CTGCG-CTAAAAATGAT-GGCCT--GGT-ATGCGAAGCGTCT-TTTTT----TTTTCAACCCGA
gi|6 : ATTG-G-TAT--ATA-ATAT-TTA-GATTTA-CAA---AT-AAAACT---TGCACG-CTGAAAACGAC-AGTTTTATAT-ACA--AAGCATAA-TTTCT----TTT--AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAATTTGTTAACAATTGTA----AAG-C-AGATTTACTACGTTAGTAGTG-TACTTGGCAT------C-GAGTTTA-ATC-ATTTA------TAACTTGAA------TATGAAATTGAATAGATAAA
gi|18 : aattt-------AAA-C-AGATTTATTACGTT-----TGCTAC-----ATATTTAAT--------CATC------------TAACTTGAAGTAAAT-ACTAAATGAAATAGACA-ACCTCA-GG---A-TAATTTAT-ACA-ACACttcacgaaca
gi|3 : taaGTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACA-ACGTAG-CGAAAA-TGATTTAT-ACA-ACACTGATTAAA-G-CGTA--TTTTAAG-CTTGGTTATATGGAT------AGGAAT-A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA---TTATCA--TTAAA--TATTATTTTTAAAGAAGTG--GGCAGG-------CGTTGTCTACACCCTAATGT----CAATCCAC-TT-TATATACAG------TAT---------------------CACTGCTTTCACTTCGATC--GAAT------------------AA--TACATATGTAGCCTACAACT----CTCGAACCTACATGTACATatta
gi|4 : AAGAAT-AT-GGTGACGTTTTTCTGTTC--ATCCCGAA--CTAAT-G-AAGG----TTAA-ATACT-TAC-------CT-TTATG--AGTTAT-AAGTA-CATG-TCA-GCTATCGAAA--ATTATTTCTAAAGAAGTG--GACA-GGCGTTAACGTTGTCTACACCCTAA----CGATAATCCAC-TTTTATTTAAAGACGGTATACATGTATCTATATATATAGTGCCGATGCTTTCACTTCG-TC--GAATACGAACCTCGATCCTTTGCAGTTACA---GTA--CCAGAATGT-TGCT-GAAATTCTATGTA--TAATCA-TGGCATTATGTA-GATAC-GGCGTTTG-TATTA---ATCTAGTATGTGCGTACATG--TTAAT-AAAG-TGC-ATCTTTAAAA-TTCACGG-GAGTG----G-GAGGGGGGGT-GGAATCATTTTGTGATCAAATCATTATGTTGTT-GCAATCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCTCATTAAAA-TGTTCTAT-ATATACATGTAGTTTTA--TTAACTTT-CAAGC-ACACTTT--CTTCTCATCCAC-G---TCTTTTTTTC-TTTTATAAT---AAA--TAGCCA-TTTTCTTA-----ATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATttactttacagttacagtaccagaatgttgcgaaaattatatgtataatcatatcattatgtgtatacgggagtatgtgcgaacatgttattaaagtgcatctttaaaattctcgggagggggtgttgggagttattttgtgataaaatcatagggatgttgcaatctttttatcattaaaatattctataaatagttttattaacttgcgagtaaacatccacgacctctttttttccctttataataacaaatggccattttcttaaaaagacaacaccttgattcgacgtgtctgtatgaatacagattatatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|15 : ACAGG-CCA-GATATTGAAT--ATTATTTCTAAATAAGTG--GACA-GG------CGTTGTCTACACCCTAATG----CCAATCCAC-TTTTATTCAAAGACGA--TAT----ATTTAG-TA-------CCGATGTTTTCACTTCG-gtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|2 : GGTCA-GCTATTGGAT--ATTATTTCTTAAGAAGTG--GACAGG-------CGTTGTCTACACC---GCGTGTGCCAATCCACTTTTTATTTA------AT-TA--------TAGTT-------GCCGATGACTTCACTTCG-CCCGGAATATA---------------CA-TTAC---------CCAGA--TGTTGCT-GAAATTATATGT-TTTAATCATTGTCATTATTGA-G-TACCAGCGTTTGAGGTTTTCCATAAC----------ACTTGTATTCA-TAAAG-TGC-ATCTTTAA----TCTC-------GCGGAGTGGGGGGC----GGAA-CATTTT-TGAT--AA--A----GTCATTGG-GATG----------------------GCAATTTTAT---TCATTAAAA-TGTT--CTAATA-------AGTT---ACTTATC-TTTCAAGCAACACATTTCATTCTCATCCACGGACTTTTTTT----CTTTTATAATA--AAGACAAGCCA---TTCGTA-----ATAAGGCAACACCTTGATTCGAC-GT--TCTGTTATGAATACAGATTAT
gi|3 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcgga-TTACA---GTA--CCAGAATGT-TGCG-AAAATTATATGT--ATAATCA-TATCATTATGTGTA-TACGGGAGTATG-TGC--------GA----------ACATG--TT-ATTAAAG-TGC-ATCTTT-AAAATTCTCGG-GAGG----------GGGTGTTGGGAGTTATTTTGTGAT--AA--A----ATCATA-G-G--GAT-----------------GTTGCAA-TCTTTTTATCATTAAAA-TATT--CT-ATA----AATAGTTTTA--TTAAC-TTGCGAGT-AAA-----------CATCCAC-GACCTCTTTTTTTCCCTTTATAATAACAAA--TGGCCA-TTTTCTTAAAAAGAC-----AACACCTTGATTCGACG--TGTCTG-TATGAATACAGATTATc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 111 111111 3333 1111 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222 88888888888888888888 22 1 111 1 1 1 2222 22 1 55555555555555555 1111 11 11 1111 2222 111 2 7777777777777777777 1 2222 11 11 33333333 44444444 55555555555555555555 111111 11 11 8888888888888888888 22 1 111 1 1 1 99999999999999999999999999 11 11 111 1 1 1 1 44444444444 111111 1 3333333333 99999999999999999999999999 1 1 11 1 555555555555 11 11 11111 2 555555555555555 11 2222 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 77 99999 44 2 3 1 77777 5555 3 1111111 77 0 55555 333 44 3 4 8888 444444 4 4 88 1 0000 33 2222 777 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 00000 2 77777777777777777777 00 8 3 66666 0 2 0 8 4 0 8 4 444 8 0 0 4 4444 00 3 1 44444444444444444 2 4444 1 88 88 8888 8888 333 3 3333333333333333333 8888 1 4 7777 999 0 11 11 88888888 77777777 0 8 44444444444444444444 777777 8 66 8 33 4444444444444444444 8 8 0 5 9999 33 0 444 0 0 0 00000000000000000000000000 33 33 777 0 0 0 3 0 44444444444 777777 3 2 0 7777777777 2 55555555555555555555555555 3 0 11 0 888888888888 33 33 44444 0 2 111111111111111 999 3 6 33 4444 33 3 0 2 33 66 2
lowQualScore : . . . .... . . . . . . ... . . . .. ..... .. . . . ..... .... . ....... .. . ..... ... .. . . .... ...... . . .. . .... .. .... ... ................................................................................... . ..... . .................... .. . . ..... . . . . . . . . ... . . . . .... .. . . ................. . .... . .. .. .... .... ... . ................... .... . . .... ... . .. .. ........ ........ . . .................... ...... . .. . .. ................... . . . . .... .. . ... . . . .......................... .. .. ... . . . . . ........... ...... . . . .......... . .......................... . . .. . ............ .. .. ..... . . ............... ... . . .. .... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 77 11111 66 3 6 3 33333 9999 6 0000000 33 4 55555 444 00 6 0 1111 888888 4 7 44 0 9999 77 1111 666 77777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 00000 5 55555555555555555555 88 0 2 88888 8 2 8 0 6 6 0 6 000 0 0 0 0 7777 77 3 0 22222222222222222 5 8888 0 33 33 0000 3333 777 7 0000000000000000000 7777 0 0 0000 000 8 00 00 22222222 66666666 8 0 66666666666666666666 222222 0 00 0 88 2222222222222222222 0 0 8 6 2222 66 0 000 0 0 0 22222222222222222222222222 88 22 555 0 0 0 2 0 22222222222 222222 2 5 0 2222222222 0 88888888888888888888888888 2 0 22 0 888888888888 88 88 55555 0 0 000000000000000 888 2 5 88 0000 22 2 2 5 88 55 5
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---T-AT--NTATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTTATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTCAT-A---CGTT----AT------TA--AAAT-AGATTTACTACGTT-----TGCTAC-TTAT---A-----T-AC--GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACG---A-TAATTTAT-ACA-ACACTGA-TAAGAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAATTG-AAGG----TTAAAGAACT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CG-T-CGCCAATCCACTTTT-ATTTAAAGACGAT-------------TAT---ATNTAG-TAGCCGATGCTTTCACTTCG-TC--GAAT-ATA---------------CA-T-TACAGTACCAGAATGTTGCCGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TA-C-GGC-GTTTG-TG-TTA---T-A---A---------ACA--TGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GAG--G-----GGGGGGGC-GT--GGAATCATTTTGTGAT-AA--A-------GTCGTTG-------------------G-ATG-TGTTGCAATTTTT-TTT-TCATTAAAA-TGTTCTA-T-AT------ATAGTT--TTA--TTAAC--TT-CAAGCA---CACTTC---T--TCTCATCCACGACCTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-NTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---T-AT--ATATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTTATATACGCCAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTCGT-A---CGTT----AT------TG--AAAC-AGATTTACTACGTT-----TGCTAC-TGAT---A-----TTAC--GAGTTTACATC-ATCTAGAGAACTAACTTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CGCG---A-TAATTTAT-ACA-ACACTGANTAAGAGTCGCA-TTTTTAAG-CTNGGTTATANGNATTT----AAGAAT--A-TGGTGACGTTTTTNTGTTC--ATCCCGAA--CTAATTG-AAGG----TTAAAGNGCTATACAGTGGGACTATNNTNACANTCGCCAANTNACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CG-T-CGCCAATCCACTTTT-ATTTAAAGACGAT-------------TAT---ATCTAG-TAGCCGATGCTTTCACTTCG-TC--GAAT-ACG---------------CA-T-TACAGTACCAGAACGTTGCTGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TA-C-GGC-GTTTG-TG-TTA---T-N---A---------ACA--TGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GAG--G-----GGGGGGGC-GT--GGAATCATTTTGTGAT-AA--A-------GTCGTTG-------------------G-ATG-TGTTGCAATTCTT-TTT-TCATTAAAA-TGTTCTA-T-A-------GTAGTT--TTA--TTAAC--TT-CGAGCA---CACTT----T--TCTCATCCACGACCTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACAGATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---C-AT--ATATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTCATGA---CGTT----AT------T---AAAT-ACATTTACCACGTT-----TGCTAC-TTAT---AATATCTAAC--GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCG---A-TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-------GCGTTGTATACACCCTAATTT-T-CCCCAATCCACTTCT-ATTTAAAGACGAT-------------TATATGATTTAGCTAGCCGATGCTTCCATTTCG-TC--GAAT-------------------CA-T-TACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TACC-GGC-GTTTG-TGTTTA---TAA---A---------ACT--TGTTCATT---AAAGCTGCTATCTTTAAAAATTCTCGGTGAG--GGCGGCGGGAGGGCGGT--GGAATCATTTTGTGAT-AATCA-------GTCATTG-------------------G-ATGTTGTTGCAATTTTT-TTTATCATTAAAACTGTTATA-T-ATT-----ATAGTT--TTGATTTATCTTTT-CAAGCA---CACTTTTCCT--TCTCATCCACGACTTTTTTTTTTCTTTTTATGATA--AA-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---T-AT--CTA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT------------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCTTATAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---T-AT--TCATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCAcgca
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---T-t
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---C-AT--ACGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACA-G-----GCGTTGTCTACACCCTAA------TGCCAATCCACTTTT-ATTCAAAGACGA--------------TAT---ATTTAG-TA-CCGATGTTTTCACTTCG-
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-TAAA--CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---G-AT--ATA
gi|18 : --AAAC-AGATTTATTACGTT-----TGCTAC---AT---A--------------TTTA-ATC-AT--------CTAACTTGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGG---A-TAATTTAT-ACA-ACAC
gi|2 : taaAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACT-AC--ATATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTCATCA---CGTT----ATTAATTGTA--AAATAAGATTTACCACGTT-----TGCTAC-ATATATGA-----TTATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACG---ATTAATTTAT-ACATACACTGA-TAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACAGG------CGTTGTCTACACC---G-CG-TGTGCCAATCCACTTTTTATTTAA------T-------------TAT---A----G-TTGCCGATGACTTCACTTCG-CCCGGAAT-ATA---------------CA-T-TAC----CCAGA-TGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TA-CCAGC-GTTTGAGG-TTT---T-CCATA---------ACACTTGT--ATTCATAAAG-TGC-ATCTTT-AA---TCTCGC-GGA--G-----TGGGGGGC-G----GAA-CATTTT-TGAT-AA--A-------GTCATTG-------------------GGATG-----GCAATT--T-TAT-TCATTAAAA-TGTTCTAAT-A---------AGTTACTTA--TC--T--TT-CAAGCAACACATTTCA--T--TCTCATCCACGGACTTTTTTT---CTTTTATAATA--AAGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---T-AT--TTACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGAC-AACGT-AGCGAAAA-TGATTTAT-ACA-ACACTGATTAA-AG-CGTA--TTTTAAG-CTTGGTTATATGGA--T----AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA--TCATTAAA--TATTATTTTTAAAGAAGTG--GGCA-G-----GCGTTGTCTACACCCTAA-TG-T----CAATCCACT----------------T-------------TAT---ATACAG-TA-TCACTGCTTTCACTTCGATC--GAATAATA---------------CA-TATGTAGC-CTACAAC--TCTCGAACCTACATGTACAT
gi|3 : -T-TACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCAT-ATCATTATGTGTA-TA-C-GGGAGTATG-TG-C-------G---A---------ACA--TGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA-----------GGGGGT-GTTGGGAGTTATTTTGTGAT-AA--A-------ATCATAG-------------------G-G-A-TGTTGCAATCTTT-TTA-TCATTAAAA-TATTCTA-TAA-------ATAGTT--TTA--TTAAC--TTGCGAGTA---AA-------------CATCCACGACCTCTTTTTTTCCCTTTATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTATttactttacagttacagtaccagaatgttgcgaaaattatatgtataatcatatcattatgtgtatacgggagtatgtgcgaacatgttattaaagtgcatctttaaaattctcgggagggggtgttgggagttattttgtgataaaatcatagggatgttgcaatctttttatcattaaaatattctataaatagttttattaacttgcgagtaaacatccacgacctctttttttccctttataataacaaatggccattttcttaaaaagacaacaccttgattcgacgtgtctgtatgaatacagattatatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|4 : gtttactcatctagagaactaaaatgaagtagatagaaaatgaaatagacaacgtagcgaaaatgatttatacaacactgattaaagcgtattttaagcttggttatatggataggaatatggtgacgtttttatgttcatcccgaactaatgaaggttaaagagttatacagtgggactatatttacttcgccaatttatattatcattaaatattatttttaaagaagtgggcaggcgttgtctacaccctaatgtcaatccactttatatacagtatcactgctttcacttcgatcgaataatacatatgtagcctacaactctcgaacctacatgtacatttactttacag----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAAT-G-AAGG----TTAAA-TACT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACCCTAA-CGAT-----AATCCACTTTT-ATTTAAAGACGGTATACATGTATCTATAT---ATATAG-T-GCCGATGCTTTCACTTCG-TC--GAAT-ACGAACCTCGATCCTTTGCAGT-TACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCAT-GGCATTATGTA-GATA-C-GGC-GTTTG-TA-TTAATCT-A---GTATGTGCGTACA--TGTT-AAT---AAAG-TGC-ATCTTT-AAAATTCACGG-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCAA--ATCATTATGTTGTTGCAATCTTTCNNNNNNNNNNN-NNN-NNNNNNNNNNNTTATTC-TCATTAAAA-TGTTCTA-T-ATATACATGTAGTT--TTA--TTAAC--TTTCAAGCA---CACTT----TCTTCTCATCCACG---TCTTTTTTTC-TTTTATAATA--AA--T-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---T-AT--TTATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTCAT-------TT----GT------AA--AATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---T-ATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGC-AATTTGTTAACAAT------TGTAAAGC-AGATTTACTACGTTAGTAGTG-TACTTGGC---A-----T--C--GAGTTTA-ATC-ATTTA------TAACTTGA-----A-TATGAAATTGAATAGATAAA-TT-CACG---A-atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT---TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---T-AT--CAATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATA-GGCAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 1111111 111111 222 1111 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888 22222 777777777777777777777 22 11111111 222 1 1 1 1 1 1 33333333333333333 1111 11 11 222 2222 1 1 4444444 1 22 2 2222 11 11 33333333 44444444 0000000000000000000000000000000000000000 111 11 2222222 11 7777777777777777 2 33 1 111 1 1 1 999999999999999999999999999 11 111 1 1 1 1 44444444444 111111 1 3333333333 999999999999999999999999999 22 1 1 222222 11 11 11111 2 3333333333333 11 2222 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 4 4 99999 55 2 3 1 77777 5555 3 1111111 77 0 555 666 44 3 4 8888 444444 4 4 88 7 666 33 2222 777 8888888888888888888888888888888888888888888888888888888888888888888888888888888 0 8 00000 2 999999999999999999999 00 8 33333333 1 0 8 4 0 0 8 222 0 0 3 0 3 3 7 3 77777777777777777 2 4444 88 88 777 8888 3 2 3 3333333 3 00 6 1 0 7777 999 0 11 11 88888888 22222222 3 8 0 1111111111111111111111111111111111111111 444 77 8 8 6 8 11 6666666 33 2222222222222222 0 0 3 3 8 44 0 444 0 0 0 111111111111111111111111111 4 33 777 0 0 0 3 0 44444444444 777777 3 2 0 7777777777 2 999999999999999999999999999 4 33 0 3 0 3 888888 33 33 44444 0 9999999999999 999 3 6 33 4444 33 3 0 2 33 66 1
lowQualScore : . . . .... . . . . . . ... . . . . . ..... .. . . . ..... .... . ....... .. . ... ... .. . . .... ...... . . .. . ... .. .... ... ............................................................................... . . ..... . ..................... .. . ........ . . . . . . . ... . . . . . . . . ................. . .... .. .. ... .... . . . ....... . .. . . . .... ... . .. .. ........ ........ . . . ........................................ ... .. . . . . .. ....... .. ................ . . . . . .. . ... . . . ........................... . .. ... . . . . . ........... ...... . . . .......... . ........................... . .. . . . . ...... .. .. ..... . ............. ... . . .. .... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 2 0 11111 66 3 6 3 33333 9999 6 0000000 33 4 444 888 00 6 0 1111 888888 4 7 44 1 111 77 1111 666 2222222222222222222222222222222222222222222222222222222222222222222222222222222 8 0 00000 5 888888888888888888888 88 0 22222222 4 8 0 6 8 8 0 000 0 0 3 7 3 3 3 3 66666666666666666 5 8888 33 33 000 3333 7 3 3 3333333 3 00 7 0 0 0000 000 8 00 00 22222222 66666666 8 0 8 4444444444444444444444444444444444444444 000 66 0 0 0 0 00 0000000 88 2222222222222222 8 0 2 2 2 22 0 000 0 0 0 222222222222222222222222222 0 22 555 0 0 0 2 0 22222222222 222222 2 5 0 2222222222 0 555555555555555555555555555 0 55 0 2 0 2 888888 88 88 55555 0 0000000000000 888 2 5 88 0000 22 2 2 5 88 55 0
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT----ATTG----TAAAAT-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAAT-G-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CG-T-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TA-C-GGC-GTTTG-TG-TT----A---T-AAC--------ACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GAG--G-----GGGGGGGC-GT--GGAATCATTTTGTGAT-AA--A-------GTCGTTG--------------------G-ATG-TGTTGCAATTTTNTTN-TCATTAAAA-TGTTCTATA-TATA------GTT--TTA--TTAAC--TT-CAAGCA---CACTTT--C-TTCTCATCCACGACCTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTTATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT----AT------TAAAAT-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAGAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAATTG-AAGG----TTAAAGAACT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CG-T-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACA-TTACAGTACCAGAATGTTGCCGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TA-C-GGC-GTTTG-TG-TT----A---T-AA---------ACATGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GAG--G-----GGGGGGGC-GT--GGAATCATTTTGTGAT-AA--A-------GTCGTTG--------------------G-ATG-TGTTGCAATTTTTTTT-TCATTAAAA-TGTTCTATA-TATA------GTT--TTA--TTAAC--TT-CAAGCA---CACTT---C-TTCTCATCCACGACCTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---CATA--TATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTC---ATGACGTT----AT------T-AAAT-ACATTTACCACGTT-----TGCTACTT-ATAATATCTAA-----C-GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCGA---TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-------GCGTTGTATACACCCTAATTT-T-CCCCAATCCACTTCT-ATTTAAAG-------------AC---GAT-------------T-----ATATGATTTA-GCTAGCCGATG-CTTCC--ATTT-------CGTC--GAAT------------------CA-TTACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TACC-GGC-GTTTG-TGTTT----A---TAAA---------ACTTGTTCATT---AAAGCTGCTATCTTTAAAAATTCTCGGTGAG--GGCGGCGGGAGGGCGGT--GGAATCATTTTGTGAT-AATCA-------GTCATTG--------------------G-ATGTTGTTGCAATTTTTTTTATCATTAAAACTGTTATATATTATA------GTT--TTGATTTATCTTTT-CAAGCA---CACTTTTCC-TTCTCATCCACGACTTTTTTTTTTCTTTTTATGATA--AA-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---TATC--TA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT-----------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCT--TATACG-CAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---TATT--CATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCA
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---Tt
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---CATA--CGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : -ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACA-G-----GCGTTGTCTACACCCTAA------TGCCAATCCACTTTT-ATTCAAAG-------------AC---GA--------------T-----AT---ATTTA-G-TA-CCGATG-TTTTC--ACTT-------CG
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-T-AAA-CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---GATA--TA
gi|18 : AAAAC-AGATTTATTACGTT-----TGCTAC------AT-----A----------TTTA-ATC-ATCTA--------ACTTGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGGA---TAATTTAT-ACA-ACAC
gi|2 : taAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACTACA--TATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTC---ATCACGTT----ATTAATTGTAAAATAAGATTTACCACGTT-----TGCTACAT-AT-AT-----GATTATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACGAT--TAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACAGG------CGTTGTCTACACC---G-CG-TGTGCCAATCCACTTTTTATTTAA----------------------T-------------T-----AT---A-----G-TTGCCGATG-ACTTC--ACTT-------CGCCCGGAATA---------------TACA-TTAC----CCAGA-TGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TA-CCAGC-GTTTGAGG-TTTTCCA---T-AAC--------ACTTGT--ATTCATAAAG-TGC-ATCTTT-AA---TCTCGC-GGA--G-----TGGGGGGC-G----GAA-CATTTT-TGAT-AA--A-------GTCATTG--------------------GGATG-----GCAATTTTATT---CATTAAAA-TGTTCTA-A-TA-A------GTTACTTA--TC--T--TT-CAAGCAACACATTT---CATTCTCATCCACGGACTTTTTTT---CTTTTATAATA--AAGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---TATT--TACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACAA-CGT-AGCGAAAATGATTTAT-ACA-ACACTG-ATTAAAG-CGTA-TTTT-AAG-CTTGGTTATATGGAT------AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAAT-G-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA--TCATTAAA--TATTATTTTTAAAGAAGTG--GGCAGG------CGTTGTCTACACCCTAA-TG-T-C---AATCCACTT-T-ATATACAGTATCACTGCTTTCACTTCGAT-------------CGAATAAT---ACATATG-TAGCCTACAACTCTCGAACCTACATGTACATT--TACTT---------------TACAGTTACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCAT-ATCATTATGTGTA-TA-C-GGGAGTATG-TG-C-----------GA---------ACATGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA-----------GGGGGT-GTTGGGAGTTATTTTGTGAT-AA--A-------ATCATAG--------------------G-G-A-TGTTGCAATCTTTTTA-TCATTAAAA-TATTCTATA-AATA------GTT--TTA--TTAAC--TTGCGAGTA---AA------------CATCCACGACCTCTTTTTTTCCCTTTATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTAT
gi|4 : ----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAAT-G-AAGG----TTAAATA-CT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACCCTAA-CGAT-----AATCCACTTTT-ATTTAAAG-------------AC---GGTATACATGTATCTAT-----AT---ATATA-G-T-GCCGATG-CTTTC--ACTT-------CGTC--GAATACGAACCTCGATCCTTTGCAGTTACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCAT-GGCATTATGTA-GATA-C-GGC-GTTTG-TA-TT----AATCT-AGTATGTGCGTACATGTT-AAT---AAAG-TGC-ATCTTT-AAAATTCACGG-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCAA--ATCATTATGTTGTTGCAATCTTTCNNNNNNNNNNNN-NNN-NNNNNNNNNNTTATTC-TCATTAAAA-TGTTCTATA-TATACATGTAGTT--TTA--TTAAC--TTTCAAGCA---CACTTT--C-TTCTCATCCACG---TCTTTTTTTC-TTTTATAATA--AA--T-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---TATT--TATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTC---AT----TT----GT------AAAATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---TATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAAT-TTGTTAACAATTG----TAAAGC-AGATTTACTACGTTAGTAGTG-TACTTGGC-AT-----------C-GAGTTTA-ATC-ATTTA------TAACTTGA-----A-TATGAAATTGAATAGATAAA-TT-CACGA---atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT--TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---TATC--AATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATAGG-CAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111111 111111 222 1111 111 99999999999999999999999999999999999999999999999999999999999999999999999 111 22222 777777777777777777777 22 11111111 222 1 1 1 1 1 1 33333333333333333 1111 11 11 1 1 2222 1 1 4444444 1 22 2 2222 11 11 33333333 3333333 000000000000000000000000000000000000000000000 11 2222222 11 7777777777777777 1 22 1 111 2 1 77777777777777777777777777 1 111 1 1 1 1 1 11 22222 333333 11 11 22222222 1 11 1 1 99999999999999999999999999999999999999999999999999999 1 1 22222 33333333 1111111 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 4 4 99999 55 2 3 1 77777 5555 3 1111111 77 0 555 666 44 3 4 8888 444444 4 4 88 5 666 33 2222 777 33333333333333333333333333333333333333333333333333333333333333333333333 2 333 00000 2 999999999999999999999 00 8 33333333 1 0 8 4 0 0 8 222 0 0 3 3 3 7 3 77777777777777777 2 4444 88 88 3 3 8888 1 2 3 3333333 3 00 6 1 0 7777 999 0 11 11 88888888 9999999 8 3 5 222222222222222222222222222222222222222222222 3 8 8 6 8 11 6666666 33 2222222222222222 0 5 3 3 99 0 444 0 0 66666666666666666666666666 1 3 0 777 0 0 0 3 0 0 33 55555 000000 33 3 2 33 6 44444444 0 1 00 0 5 0 5 77777777777777777777777777777777777777777777777777777 0 0 0 55555 66666666 3 6666666 33 3 0 2 33 66 1
lowQualScore : . . . .... . . . . . . ... . . . . . ..... .. . . . ..... .... . ....... .. . ... ... .. . . .... ...... . . .. . ... .. .... ... ....................................................................... . ... ..... . ..................... .. . ........ . . . . . . . ... . . . . . . . ................. . .... .. .. . . .... . . . ....... . .. . . . .... ... . .. .. ........ ....... . . . ............................................. . . . . . .. ....... .. ................ . . . . .. . ... . . .......................... . . . ... . . . . . . .. ..... ...... .. . . .. . ........ . . .. . . . . ..................................................... . . . ..... ........ . ....... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 2 0 11111 66 3 6 3 33333 9999 6 0000000 33 4 444 888 00 6 0 1111 888888 4 7 44 9 111 77 1111 666 22222222222222222222222222222222222222222222222222222222222222222222222 5 000 00000 5 888888888888888888888 88 0 22222222 4 8 0 6 8 8 0 000 0 0 3 3 3 3 3 66666666666666666 5 8888 33 33 3 3 3333 0 0 3 3333333 3 00 7 0 0 0000 000 8 00 00 22222222 4444444 0 8 6 444444444444444444444444444444444444444444444 8 0 0 0 0 00 0000000 88 2222222222222222 8 0 2 2 00 0 000 0 0 22222222222222222222222222 0 2 0 555 0 0 0 2 0 0 88 00000 555555 88 2 5 88 0 00000000 0 0 22 0 8 0 8 22222222222222222222222222222222222222222222222222222 0 5 2 00000 22222222 2 5555555 22 2 2 5 88 55 0
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTTA-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCAC-TTTTATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCA-TGTCATTATGTA-G-TACCGGC-GTTTG-TG-TT----A---TA--------ANACNTGTT-AT---TAAAG-TGC-ATCTTT-AAAATTCTCG-G-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATT-GGATGTTGTTGCAA-TCTTTTTATCATTAAAA-TGTTCTATA-TATAGTTAC--TTA--TTAA------C--TT-CAAGC-ACACG---TTTT-----C-TTCTCATCCAC-GACTTCTTTTTTTC-----CTTTT--------ATAATAA--A-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT----ATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCAC-TTTTATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCA-TGTCATTATGTA-G-TA-CGGC-GTTTG-TG-TT----A---TA--------ACACNTGTT-AT---TAAAG-TGC-ATCTTT-AAAATTCTCG-G-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCGTT-GGATG-TGTTGCAA-TTTTNTTNTCATTAAAA-TGTTCTATA-TATAGTT----TTA--TTAA------C--TT-CAAGC-ACAC----TTT------C-TTCTCATCCAC-GACCTCTTTTTTTC-----CTTTT--------ATAATAA--A-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---CATA--TATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTC---ATGACGTT----ATT---AAA-T-ACATTTACCACGTT-----TGCTACTT-ATAATATCTAA-----C-GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCGA---TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-------GCGTTGTATACACCCTAATTTT-CCCCAATCCAC-TTCTATTTAAAG-------------AC---GAT-------------T-----ATATGATTTA-GCTAGCCGATG-CTTCC--ATTT-------CGTC--GAAT------------------CA-TTACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCA-TGTCATTATGTA-G-TACCGGC-GTTTG-TGTTT----A---TA--------AAACTTGTTCAT---TAAAGCTGCTATCTTTAAAAATTCTCG-GTGA--GGGCGGCGGGAGGGCGGT--GGAATCATTTTGTGATAATCAGTCATT-GGATGTTGTTGCAATTTTTTTTATCATTAAAACTGTTATATATTATAGTT----TTGATTTAT------CTTTT-CAAGC-ACAC----TTTTC----C-TTCTCATCCAC-GACTTTTTTTTTTC-----TTTTT--------ATGATAA--A-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---TATC--TA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT-----------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCT--TATACG-CAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---TATT--CATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCA
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---Tt
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---CATA--CGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : -ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACA-G-----GCGTTGTCTACACCCTAA-----TGCCAATCCAC-TTTTATTCAAAG-------------AC---GA--------------T-----AT---ATTTA-G-TA-CCGATG-TTTTC--ACTT-------CG
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-T-AAA-CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---GATA--TA
gi|18 : AAAA-C-AGATTTATTACGTT-----TGCTAC------AT-----A----------TTTA-ATC-ATCTA--------ACTTGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGGA---TAATTTAT-ACA-ACAC
gi|2 : taAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACTACA--TATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTC---ATCACGTTATTAATTGTAAAA-TAAGATTTACCACGTT-----TGCTACAT-AT-AT-----GATTATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACGAT--TAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACA-G-----GCGTTGTCTACACC---G-CGTGTGCCAATCCACTTTTTATTTA----------------------AT-------------T-----A-------TA-G-TTGCCGATG-ACTTC--ACTT-------CGCCCGGAATA---------------TACA-TTAC----CCAG-ATGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TACCAGC-GTTTGAGG-TTTTCCA---TA--------ACACTTG-T-ATTCATAAAG-TGC-ATCTTT-AA---TCTCGCG-GA--GT-----GGGGG----GC--GGAA-CATTTT-TGATAA--AGTCATTGGGATG-----GCAA-TTTTAT--TCATTAAAA-TGTTCTA-A-TA-AGTTAC--TTA--TC--------T--TT-CAAGCAACACA---TTT------CATTCTCATCCACGGAC----TTTTTTT-----CTTTT--------ATAATAA--AGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---TATT--TACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACAA-CGT-AGCGAAAATGATTTAT-ACA-ACACTG-ATTAAAG-CGTA-TTTT-AAG-CTTGGTTATATGGAT------AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA--TCATTAAA--TATTATTTTTAAAGAAGTG--GGCAGG------CGTTGTCTACACCCTAA-TGT-C---AATCCAC-TT-TATATACAGTATCACTGCTTTCACTTCGAT-------------CGAATAAT---ACATATG-TAGCCTACAACTCTCGAACCTACATGTACATT--TACTT---------------TACAGTTACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCA-TATCATTATGTGTA-TA-CGGGAGTATG-TG-CG----A---------------ACATGTT-AT---TAAAG-TGC-ATCTTT-AAAATTCTCG-G-GA--GG-----GGG----T-GTTGGGAGTTATTTTGTGATAA--AATCATA-GGG-A-TGTTGCAA-TCTTTTTATCATTAAAA-TATTCTATA-AATAGTT----TTA--TTAA------C--TTGCGAGT-AAAC--------------------ATCCAC-GACCTCTTTTTTTC-----CCTTT--------ATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTAT
gi|4 : ----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAATA-CT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACCCTAA-----CGATAATCCAC-TTTTATTTAAAG-------------AC---GGTATACATGTATCTAT-----AT---ATATA-G-T-GCCGATG-CTTTC--ACTT-------CGTC--GAATACGAACCTCGATCCTTTGCAGTTACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCA-TGGCATTATGTA-GATA-CGGC-GTTTG-TA-TT----AATCTAGTATGTGCGTACATGTT-AA---TAAAG-TGC-ATCTTT-AAAATTCACG-G-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCA--AATCATT---ATGTTGTTGCAA-TCTTTCNNNNNNNNNNN-NNNNNNNNN-NNNNNTTATTCTCA--TTAAAATGTTC--TA-TATAT-ACATGTAGTTTTATTAAC-TT-TCAAGCAC-ACTTTCTTCTCATCCACGTCTTTTTTTCTTTTATAAT-A--A-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---TATT--TATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTC---AT-----------TTGTAAAATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---TATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAAT-TTGTTAACAATTGTAAAG-C-AGATTTACTACGTTAGTAGTG-TACTTGGC-AT-----------C-GAGTTTA-ATC-ATTTA------TAACTTGA-----A-TATGAAATTGAATAGATAAA-TT-CACGA---atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT--TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---TATC--AATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATAGG-CAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 1111111 111111 222 1111 111 888888888888888888888888888888888888888888888888888888888888888888888888 111 22222 777777777777777777777 22 11111111 222 1 1 1 1 1 1 33333333333333333 1111 11 11 1 1 2222 1 1 4444444 1 22 2 2222 11 11 33333333 3333333 0000000000000000000000000000000000000000 111 11 2222222 11 7777777777777777 1 22 1 111 77777777777777777777777777 11 111 1 1 1 1 44444444444 111111 11 11 1 00000000000000000000000000 222 1 1 3333333 33333 333333 1 1 2222222 11 111 1111 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 4 4 99999 55 2 3 1 77777 5555 3 1111111 77 0 555 666 44 3 4 8888 444444 4 4 88 5 666 33 2222 777 999999999999999999999999999999999999999999999999999999999999999999999999 2 333 00000 2 999999999999999999999 00 8 33333333 1 0 8 4 0 0 8 222 0 0 3 3 3 7 3 77777777777777777 2 4444 88 88 3 3 8888 1 2 3 3333333 3 00 6 1 0 7777 999 0 11 11 88888888 9999999 3 8 0 1111111111111111111111111111111111111111 444 77 8 8 6 8 11 6666666 33 2222222222222222 0 5 3 3 99 0 444 2 44444444444444444444444444 1 33 777 0 0 0 3 0 44444444444 777777 3 2 33 2 33 9 0 6 33333333333333333333333333 777 0 3 0 2222222 99999 111111 0 0 5555555 33 0 3 8 777 1111 33 3 0 2 33 66 1
lowQualScore : . . . .... . . . . . . ... . . . . . ..... .. . . . ..... .... . ....... .. . ... ... .. . . .... ...... . . .. . ... .. .... ... ........................................................................ . ... ..... . ..................... .. . ........ . . . . . . . ... . . . . . . . ................. . .... .. .. . . .... . . . ....... . .. . . . .... ... . .. .. ........ ....... . . . ........................................ ... .. . . . . .. ....... .. ................ . . . . .. . ... . .......................... . .. ... . . . . . ........... ...... . . .. . .. . . . .......................... ... . . . ....... ..... ...... . . ....... .. . . . ... .... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 2 0 11111 66 3 6 3 33333 9999 6 0000000 33 4 444 888 00 6 0 1111 888888 4 7 44 9 111 77 1111 666 555555555555555555555555555555555555555555555555555555555555555555555555 5 000 00000 5 888888888888888888888 88 0 22222222 4 8 0 6 8 8 0 000 0 0 3 3 3 3 3 66666666666666666 5 8888 33 33 3 3 3333 0 0 3 3333333 3 00 7 0 0 0000 000 8 00 00 22222222 4444444 8 0 8 4444444444444444444444444444444444444444 000 66 0 0 0 0 00 0000000 88 2222222222222222 8 0 2 2 00 0 000 5 22222222222222222222222222 0 22 555 0 0 0 2 0 22222222222 222222 2 5 88 5 22 8 0 5 88888888888888888888888888 555 0 2 0 0000000 55555 222222 0 0 5555555 22 8 2 8 000 8888 22 2 2 5 88 55 0
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAA-TCTTT--------------------------TTATT--CATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAA-TCTTT--------------------------TTAT---CATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CACGTTTTCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---CATA--TATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTC---ATGACGTT-----ATT---AAA-T-ACATTTACCACGTT-----TGCTACTT-ATAATATCTAA-----C-GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCGA---TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-------GCGTTGTATACACCCTAATTTT-CCCCAATCCACTTCT-ATTTAAAG-------------AC---GAT-------------T-----ATATGATTTA-GCTAGCCGATG-CTTCC--ATTT-------CGTC--GAAT------------------CA-TTACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TGTTT----A---TA--------AAACTTGTTCATT---AAAGCTGCTATCTTTAAAAATTCTCGGTGA--GGGCGGCGGGAGGGCGGT--GGAATCATTTTGTGATAATCAGTCATTGG-ATGTTGTTGCAATTTTTT--------------------------TTAT---CATTAAAACTGTTATATATTA------TAGTTTTGATTTATCT--T-TT-CAAGCA-CACTTTTCCTTCTCATCCACG-ACTTTTTTTTTTCTTTTTATGATA--AA-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---TATC--TA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT-----------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCT--TATACG-CAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---TATT--CATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCA
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---Tt
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---CATA--CGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : -ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACA-G-----GCGTTGTCTACACCCTAA-----TGCCAATCCACTTTT-ATTCAAAG-------------AC---GA--------------T-----AT---ATTTA-G-TA-CCGATG-TTTTC--ACTT-------CG
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-T-AAA-CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---GATA--TA
gi|18 : AAAA-C-AGATTTATTACGTT-----TGCTAC------AT-----A----------TTTA-ATC-ATCTA--------ACTTGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGGA---TAATTTAT-ACA-ACAC
gi|2 : taAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACTACA--TATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTC---ATCACGTT-ATTAATTGTAAAA-TAAGATTTACCACGTT-----TGCTACAT-AT-AT-----GATTATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACGAT--TAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACAGG------CGTTGTCTACACC---G-CGTGTGCCAATCCACTTTTTATTTAA----------------------T-------------T-----AT---A-----G-TTGCCGATG-ACTTC--ACTT-------CGCCCGGAATA---------------TACA-TTAC----CCAGA-TGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TACCAGCGTTTGAGG-TTTTCCA---TA--------ACACTTGT--ATTCATAAAG-TGC-ATCTTT-AA---TCTCGC-GG--AG-----TGGGGGGC-G----GAA-CATTTT-TGATAA--AGTCATTGGGATG-----GCAA-T---T--------------------------TTATT--CATTAAAA-TGTTCTA-A-TA-------AGTT---ACTTAT-C--T-TT-CAAGCAACACATTTCATTCTCATCCACGGACTTTTTTT----CTTTTATAATA--AAGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---TATT--TACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACAA-CGT-AGCGAAAATGATTTAT-ACA-ACACTG-ATTAAAG-CGTA-TTTT-AAG-CTTGGTTATATGGAT------AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA--TCATTAAA--TATTATTTTTAAAGAAGTG--GGCAGG------CGTTGTCTACACCCTAA-TGT-C---AATCCACTT-T-ATATACAGTATCACTGCTTTCACTTCGAT-------------CGAATAAT---ACATATG-TAGCCTACAACTCTCGAACCTACATGTACATT--TACTT---------------TACAGTTACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCAT-ATCATTATGTGTA-TACGGGAGTATG-TG-CG----A---------------ACATGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA-----------GGGGGT-GTTGGGAGTTATTTTGTGATAA--AATCATAGG---GATGTTGCAA-TCTTT--------------------------TTAT---CATTAAAA-TATTCTATA-AA------TAGTT-----TTAT-TAAC-TTGCGAGTA-AA-----------CATCCACG-ACCTCTTTTTTTCCCTTTATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTAT
gi|4 : ----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAATA-CT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACCCTAA-----CGATAATCCACTTTT-ATTTAAAG-------------AC---GGTATACATGTATCTAT-----AT---ATATA-G-T-GCCGATG-CTTTC--ACTT-------CGTC--GAATACGAACCTCGATCCTTTGCAGTTACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCAT-GGCATTATGTA-GATA-CGGCGTTTG-TA-TT----AATCTAGTATGTGCGTACATGTT-AAT---AAAG-TGC-ATCTTT-AAAATTCACGG-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCA--AATCATT---ATGTTGTTGCAA-TCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCTCATTAAAA-TGTTCTATA-TATACATGTAGTT-----TTAT-TAACTTT-CAAGCA-CAC--TTTCTTCTCATCCACG----TCTTTTTTT-CTTTTATAAT---AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---TATT--TATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTC---AT------------TTGTAAAATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---TATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAAT-TTGTTAA-CAATTGTAAAG-C-AGATTTACTACGTTAGTAGTG-TACTTGGC-AT-----------C-GAGTTTA-ATC-ATTTA------TAACTTGA-----A-TATGAAATTGAATAGATAAA-TT-CACGA---atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT--TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---TATC--AATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATAGG-CAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 1111111 111111 222 1111 111 888888888888888888888888888888888888888888888888888888888888888888888888 111 22222 777777777777777777777 22 11111111 222 1 1 1 1 1 1 33333333333333333 1111 11 11 1 1 2222 1 1 4444444 1 22 2 2222 11 11 33333333 3333333 0000000000000000000000000000000000000000 111 11 2222222 11 7777777777777777 1 22 1 111 77777777777777777777777777 11 111 1 1 1 1 44444444444 111111 11 11 00000000000000000000000000000000 1 1 3333333 33333 333333 1 1 2222222 11 111 1111 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 4 4 99999 55 2 3 1 77777 5555 3 1111111 77 0 555 666 44 3 4 8888 444444 4 4 88 5 666 33 2222 777 999999999999999999999999999999999999999999999999999999999999999999999999 2 333 00000 2 999999999999999999999 00 8 33333333 1 0 8 4 0 0 8 222 0 0 3 3 3 7 3 77777777777777777 2 4444 88 88 3 3 8888 1 2 3 3333333 3 00 6 1 0 7777 999 0 11 11 88888888 9999999 3 8 0 1111111111111111111111111111111111111111 444 77 8 8 6 8 11 6666666 33 2222222222222222 0 5 3 3 99 0 444 2 44444444444444444444444444 1 33 777 0 0 0 3 0 44444444444 777777 3 2 33 2 33 9 6 66666666666666666666666666666666 0 3 0 2222222 99999 111111 0 0 4444444 33 0 3 8 777 1111 33 3 0 2 33 66 1
lowQualScore : . . . .... . . . . . . ... . . . . . ..... .. . . . ..... .... . ....... .. . ... ... .. . . .... ...... . . .. . ... .. .... ... ........................................................................ . ... ..... . ..................... .. . ........ . . . . . . . ... . . . . . . . ................. . .... .. .. . . .... . . . ....... . .. . . . .... ... . .. .. ........ ....... . . . ........................................ ... .. . . . . .. ....... .. ................ . . . . .. . ... . .......................... . .. ... . . . . . ........... ...... . . .. . .. . . ................................ . . . ....... ..... ...... . . ....... .. . . . ... .... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 2 0 11111 66 3 6 3 33333 9999 6 0000000 33 4 444 888 00 6 0 1111 888888 4 7 44 9 111 77 1111 666 555555555555555555555555555555555555555555555555555555555555555555555555 5 000 00000 5 888888888888888888888 88 0 22222222 4 8 0 6 8 8 0 000 0 0 3 3 3 3 3 66666666666666666 5 8888 33 33 3 3 3333 0 0 3 3333333 3 00 7 0 0 0000 000 8 00 00 22222222 4444444 8 0 8 4444444444444444444444444444444444444444 000 66 0 0 0 0 00 0000000 88 2222222222222222 8 0 2 2 00 0 000 5 22222222222222222222222222 0 22 555 0 0 0 2 0 22222222222 222222 2 5 88 5 22 8 5 88888888888888888888888888888888 0 2 0 0000000 55555 222222 0 0 8888888 22 8 2 8 000 8888 22 2 2 5 88 55 0
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---CATA--TATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTC---ATGACGTT-----ATT---AAA-T-ACATTTACCACGTT-----TGCTACTT-ATAATATCTAA-----C-GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCGA---TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-------GCGTTGTATACACCCTAATTTT-CCCCAATCCACTTCT-ATTTAAAG-------------AC---GAT-------------T-----ATATGATTTA-GCTAGCCGATG-CTTCC--ATTT-------CGTC--GAAT------------------CA-TTACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TGTTT----A---TA--------AAACTTGTTCATT---AAAGCTGCTATCTTTAAAAATTCTCGGTGA--GGGCGGCGGGAGGGCGGT--GGAATCATTTTGTGATAATCAGTCATTGG-ATGTTGTTGCAATTTTT--------------------------TTTA--TCATTAAAACTGTTATATATTA------TAGTTTTGATTTATCT--T-TT-CAAGCA-CACTTTTCCTTCTCATCCACG-ACTTTTTTTTTTCTTTTTATGATA--AA-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---TATC--TA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT-----------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCT--TATACG-CAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---TATT--CATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCA
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---Tt
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---CATA--CGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : -ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACA-G-----GCGTTGTCTACACCCTAA-----TGCCAATCCACTTTT-ATTCAAAG-------------AC---GA--------------T-----AT---ATTTA-G-TA-CCGATG-TTTTC--ACTT-------CG
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-T-AAA-CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---GATA--TA
gi|18 : AAAA-C-AGATTTATTACGTT-----TGCTAC------AT-----A----------TTTA-ATC-ATCTA--------ACTTGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGGA---TAATTTAT-ACA-ACAC
gi|2 : taAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACTACA--TATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTC---ATCACGTT-ATTAATTGTAAAA-TAAGATTTACCACGTT-----TGCTACAT-AT-AT-----GATTATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACGAT--TAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACAGG------CGTTGTCTACACC---G-CGTGTGCCAATCCACTTTTTATTTAA----------------------T-------------T-----AT---A-----G-TTGCCGATG-ACTTC--ACTT-------CGCCCGGAATA---------------TACA-TTAC----CCAGA-TGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TACCAGCGTTTGAGG-TTTTCCA---TA--------ACACTTGT--ATTCATAAAG-TGC-ATCTTT-AA---TCTCGC-GG--AG-----TGGGGGGC-G----GAA-CATTTT-TGATAA--AGTCATTGGGATG-----GCAAT---T--------------------------TTAT--TCATTAAAA-TGTTCTA-A-TA-------AGTT---ACTTAT-C--T-TT-CAAGCAACACATTTCATTCTCATCCACGGACTTTTTTT----CTTTTATAATA--AAGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---TATT--TACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACAA-CGT-AGCGAAAATGATTTAT-ACA-ACACTG-ATTAAAG-CGTA-TTTT-AAG-CTTGGTTATATGGAT------AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA--TCATTAAA--TATTATTTTTAAAGAAGTG--GGCAGG------CGTTGTCTACACCCTAA-TGT-C---AATCCACTT-T-ATATACAGTATCACTGCTTTCACTTCGAT-------------CGAATAAT---ACATATG-TAGCCTACAACTCTCGAACCTACATGTACATT--TACTT---------------TACAGTTACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCAT-ATCATTATGTGTA-TACGGGAGTATG-TG-CG----A---------------ACATGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA-----------GGGGGT-GTTGGGAGTTATTTTGTGATAA--AATCATAGG---GATGTTGCAATCTTT--------------------------TTA---TCATTAAAA-TATTCTATA-AA------TAGTT-----TTAT-TAAC-TTGCGAGTA-AA-----------CATCCACG-ACCTCTTTTTTTCCCTTTATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTAT
gi|4 : ----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAATA-CT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACCCTAA-----CGATAATCCACTTTT-ATTTAAAG-------------AC---GGTATACATGTATCTAT-----AT---ATATA-G-T-GCCGATG-CTTTC--ACTT-------CGTC--GAATACGAACCTCGATCCTTTGCAGTTACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCAT-GGCATTATGTA-GATA-CGGCGTTTG-TA-TT----AATCTAGTATGTGCGTACATGTT-AAT---AAAG-TGC-ATCTTT-AAAATTCACGG-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCA--AATCATT---ATGTTGTTGCAATCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCTCATTAAAA-TGTTCTATA-TATACATGTAGTT-----TTAT-TAACTTT-CAAGCA-CAC-TTT-CTTCTCATCCACG----TCTTTTTTT-CTTTTATAAT---AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---TATT--TATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTC---AT------------TTGTAAAATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---TATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAAT-TTGTTAA-CAATTGTAAAG-C-AGATTTACTACGTTAGTAGTG-TACTTGGC-AT-----------C-GAGTTTA-ATC-ATTTA------TAACTTGA-----A-TATGAAATTGAATAGATAAA-TT-CACGA---atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT--TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---TATC--AATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATAGG-CAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 1111111 111111 222 1111 111 888888888888888888888888888888888888888888888888888888888888888888888888 111 22222 777777777777777777777 22 11111111 222 1 1 1 1 1 1 33333333333333333 1111 11 11 1 1 2222 1 1 4444444 1 22 2 2222 11 11 33333333 3333333 0000000000000000000000000000000000000000 111 11 2222222 11 7777777777777777 1 22 1 111 77777777777777777777777777 11 111 1 1 1 1 44444444444 111111 11 11 00000000000000000000000000000000 1 1 3333333 33333 333333 1 1 2222222 11 111 1111 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 4 4 99999 55 2 3 1 77777 5555 3 1111111 77 0 555 666 44 3 4 8888 444444 4 4 88 5 666 33 2222 777 999999999999999999999999999999999999999999999999999999999999999999999999 2 333 00000 2 999999999999999999999 00 8 33333333 1 0 8 4 0 0 8 222 0 0 3 3 3 7 3 77777777777777777 2 4444 88 88 3 3 8888 1 2 3 3333333 3 00 6 1 0 7777 999 0 11 11 88888888 9999999 3 8 0 1111111111111111111111111111111111111111 444 77 8 8 6 8 11 6666666 33 2222222222222222 0 5 3 3 99 0 444 2 44444444444444444444444444 1 33 777 0 0 0 3 0 44444444444 777777 3 2 33 2 33 9 6 66666666666666666666666666666666 0 3 0 2222222 99999 111111 0 0 4444444 33 0 3 8 777 1111 33 3 0 2 33 66 1
lowQualScore : . . . .... . . . . . . ... . . . . . ..... .. . . . ..... .... . ....... .. . ... ... .. . . .... ...... . . .. . ... .. .... ... ........................................................................ . ... ..... . ..................... .. . ........ . . . . . . . ... . . . . . . . ................. . .... .. .. . . .... . . . ....... . .. . . . .... ... . .. .. ........ ....... . . . ........................................ ... .. . . . . .. ....... .. ................ . . . . .. . ... . .......................... . .. ... . . . . . ........... ...... . . .. . .. . . ................................ . . . ....... ..... ...... . . ....... .. . . . ... .... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 2 0 11111 66 3 6 3 33333 9999 6 0000000 33 4 444 888 00 6 0 1111 888888 4 7 44 9 111 77 1111 666 555555555555555555555555555555555555555555555555555555555555555555555555 5 000 00000 5 888888888888888888888 88 0 22222222 4 8 0 6 8 8 0 000 0 0 3 3 3 3 3 66666666666666666 5 8888 33 33 3 3 3333 0 0 3 3333333 3 00 7 0 0 0000 000 8 00 00 22222222 4444444 8 0 8 4444444444444444444444444444444444444444 000 66 0 0 0 0 00 0000000 88 2222222222222222 8 0 2 2 00 0 000 5 22222222222222222222222222 0 22 555 0 0 0 2 0 22222222222 222222 2 5 88 5 22 8 5 88888888888888888888888888888888 0 2 0 0000000 55555 222222 0 0 8888888 22 8 2 8 000 8888 22 2 2 5 88 55 0
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---CATA--TATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTC---ATGACGTT-----ATT---AAA-T-ACATTTACCACGTT-----TGCTACTT-ATAATATCTAA-----C-GAGTTTACATCGATCTAGAGAACTAACCTGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCGA---TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-------GCGTTGTATACACCCTAATTTT-CCCCAATCCACTTCT-ATTTAAAG-------------AC---GAT-------------T-----ATATGATTTA-GCTAGCCGATG-CTTCC--ATTT-------CGTC--GAAT------------------CA-TTACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TGTTT----A---TA--------AAACTTGTTCATT---AAAGCTGCTATCTTTAAAAATTCTCGGTGA--GGGCGGCGGGAGGGCGGT--GGAATCATTTTGTGATAATCAGTCATTGG-ATGTTGTTGCAATTTTT--------------------------TTTA--TCATTAAAACTGTTATATATTA------TAGTTTTGATTTATCT--T-TT-CAAGCA-CACTTTTCCTTCTCATCCACG-ACTTTTTTTTTTCTTTTTATGATA--AA-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---TATC--TA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT-----------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCT--TATACG-CAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---TATT--CATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCA
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---Tt
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---CATA--CGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : -ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACA-G-----GCGTTGTCTACACCCTAA-----TGCCAATCCACTTTT-ATTCAAAG-------------AC---GA--------------T-----AT---ATTTA-G-TA-CCGATG-TTTTC--ACTT-------CG
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-T-AAA-CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---GATA--TA
gi|18 : AAAA-C-AGATTTATTACGTT-----TGCTAC------AT-----A----------TTTA-ATC-ATCTA--------ACTTGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGGA---TAATTTAT-ACA-ACAC
gi|2 : taAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACTACA--TATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTC---ATCACGTT-ATTAATTGTAAAA-TAAGATTTACCACGTT-----TGCTACAT-AT-AT-----GATTATCGGAGTTTA-ATC-ATCTAGAGAACT-ACCTGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACGAT--TAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACAGG------CGTTGTCTACACC---G-CGTGTGCCAATCCACTTTTTATTTAA----------------------T-------------T-----AT---A-----G-TTGCCGATG-ACTTC--ACTT-------CGCCCGGAATA---------------TACA-TTAC----CCAGA-TGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TACCAGCGTTTGAGG-TTTTCCA---TA--------ACACTTGT--ATTCATAAAG-TGC-ATCTTT-AA---TCTCGC-GG--AG-----TGGGGGGC-G----GAA-CATTTT-TGATAA--AGTCATTGGGATG-----GCAAT---T--------------------------TTAT--TCATTAAAA-TGTTCTA-A-TA-------AGTT---ACTTAT-C--T-TT-CAAGCAACACATTTCATTCTCATCCACGGACTTTTTTT----CTTTTATAATA--AAGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---TATT--TACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTAC-TC-ATCTAGAGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACAA-CGT-AGCGAAAATGATTTAT-ACA-ACACTG-ATTAAAG-CGTA-TTTT-AAG-CTTGGTTATATGGAT------AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA--TCATTAAA--TATTATTTTTAAAGAAGTG--GGCAGG------CGTTGTCTACACCCTAA-TGT-C---AATCCACTT-T-ATATACAGTATCACTGCTTTCACTTCGAT-------------CGAATAAT---ACATATG-TAGCCTACAACTCTCGAACCTACATGTACATT--TACTT---------------TACAGTTACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCAT-ATCATTATGTGTA-TACGGGAGTATG-TG-CG----A---------------ACATGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA-----------GGGGGT-GTTGGGAGTTATTTTGTGATAA--AATCATAGG---GATGTTGCAATCTTT--------------------------TTA---TCATTAAAA-TATTCTATA-AA------TAGTT-----TTAT-TAAC-TTGCGAGTA-AA-----------CATCCACG-ACCTCTTTTTTTCCCTTTATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTAT
gi|4 : ----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAATA-CT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACCCTAA-----CGATAATCCACTTTT-ATTTAAAG-------------AC---GGTATACATGTATCTAT-----AT---ATATA-G-T-GCCGATG-CTTTC--ACTT-------CGTC--GAATACGAACCTCGATCCTTTGCAGTTACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCAT-GGCATTATGTA-GATA-CGGCGTTTG-TA-TT----AATCTAGTATGTGCGTACATGTT-AAT---AAAG-TGC-ATCTTT-AAAATTCACGG-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCA--AATCATT---ATGTTGTTGCAATCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCTCATTAAAA-TGTTCTATA-TATACATGTAGTT-----TTAT-TAACTTT-CAAGCA-CAC-TTT-CTTCTCATCCACG----TCTTTTTTT-CTTTTATAAT---AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---TATT--TATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTC---AT------------TTGTAAAATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---TATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAAT-TTGTTAA-CAATTGTAAAG-C-AGATTTACTACGTTAGTAGTG-TACTTGGC-AT-----------C-GAGTTTA-ATC-ATTTA------TAACTTGA-----A-TATGAAATTGAATAGATAAA-TT-CACGA---atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT--TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---TATC--AATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATAGG-CAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
blockSeqs : C A G TATT T T A C C T TTG A C T C A AGGGG CT G A G TTAGA AAT T ATAGATC AG CAC TGG AA A G TTTA CATAGA T G GG T ACC CA AAAA TCG TGTATGTACAGAATTCATGGAATTGCTCAGGGCATTCGCAATTTGTTAACA G TA AGTAG C ATATATGATTATCG A . GAGAACTA T . T C AAA . T . T . T . GTTATATGGAT G AAA . . . . . G G A AGTGGGA A C C T T GG GA . . GGCGTTAA CGTGTG T T TATCACTGCTTTCACTTCGATCGAATA . TT T . A A GA ACATGTA CG ACGAACCTCGATCCTT G A A T T TA C TATTAATCTAGTATGTGCGT T T CAT . . . A . GTGGGA TGTTG T G . G GA A C CNNNNNNNNNNNNNNNNNNNNNNNNNTTATTC . T . TACATGT AC TAACT G A CATTTCA GA T C AAC GACA T A G . TT G
blockSeqs : . . . G C . A . . T . . . . A . . G G . A ATA TC . G A . C A . . A CT . A G G GC CT . TC GGAATACGGGGATTGCAGCGTGATCGCGATTTCTCAT G TT . C TTGGCATC A . GAGAACT C . A . T . . . . . . . AATATTT G A . . . . . T . . . . . . G . TG GC . . GG TGTC T . ACGGTATACATGTATCTAT . CA . . T . . . . A G A A . . GA C AGGTTTTCCATAAC A T . . . . A . AGTG GGT T G . G A T C TTAT . T . T . TAAC . . CTTTC A T . A AT T A G . T G
blockSeqs : . . . T C . A . . T . . . . A . . G C . A CGC T . G A . T A . . A AT . G A C GC CG . CC AGACGTTGGCATCGCTTTTCATCACGTTATTA G C . . ATA C . TA A . A . . . . . A . G GC . . GG TG T . ACGAT . TA . . A . . . . T . . . . . G . TGCGA A . . . . . . . . CG . . . . . . . TTA . . . . . CT . . . . . . . AT . A . . T T
blockSeqs : . . . T G . T . . A . . . . C . . A G . A TTG T . T A . A G . . T AT . G G T G AA . CT C . A . . T . G . . . T . . GG CG . . TT . . . . . . . .
blockSeqs : . . . G C . A . . C . . . . A . . C C . A CTG T . G A . A A . . A CT . G A A A AC . .
blockSeqs : . . . T T . T . . A . . . . C . . C C . A TTC C . T A . A A . . A CT . T . C A . . .
blockSeqs : . . . T C . C . . A . . . . A . . A A . A CTG T . G G . T A . . T AT . . . . .
blockSeqs : . . . A T . A . . T . . . . A . . G A . A CTT C . G T . T A . . A . . .
blockSeqs : . . . T C . T . . G . . . . A . . G G . . TG T . G . . T . . . . .
blockSeqs : . . . . . . . . C . . . . . . G . . . . . . . . . C . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : GC* A* T******* G*** GC* ** ** GG****** CG***** ACGAT*********************************** ***
originalCons : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTACATC-ATCTAGAGAACTAACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GNTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG-----GCGTTGTCTACACCCTAA-CGT-CGCCAATCCACTTTT-ATTTAAAG-------------AC---GAT-------------T-----AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
finalCons : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACGC-AAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTAA-TC-ATCTAT-------ACCTGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACAG---TCAGC-TATTGAA--TATTATTTCTAAAGAAGTG--GACAGG------CGTTGTCTACACCCTAACG-----CCAATCCACTTTT-ATTTAAAGACGAT-----------------------------------AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCAT-GTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-ATT---AAAG-TGC-ATCTTT-AAAATTCTCGG-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATTGG-ATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGCA-CAC-TTTCCTTCTCATCCACG-ACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 1111111 111111 222 1111 111 888888888888888888888888888888888888888888888888888888888888888888888888 111 22222 777777777777777777777 777777777777777777 222 1 1 1 1 1 1 33333333333333333 1111 11 11 1 1 2222 1 1 4444444 1 22 2 2222 11 11 222222 1111 11111111111111111111111111111111111111111111111 11 2222222 11 7777777777777777 1 22 1 111 77777777777777777777777777 1 111 1 1 1 1 1 444444444 11 11 11 11 00000000000000000000000000000000 1 1 3333333 33333 333333 1 1 2222222 1 1 111 1111 11 11
lowQualScore : 4 3 3 8888 2 3 4 3 3 1 666 3 3 3 77 99999 55 2 3 1 77777 5555 3 1111111 77 0 555 666 44 3 4 8888 444444 4 4 88 5 666 33 2222 777 999999999999999999999999999999999999999999999999999999999999999999999999 2 333 00000 2 999999999999999999999 8 8 999999999999999999 0 8 4 0 0 8 222 0 0 3 3 3 7 3 77777777777777777 2 4444 88 88 3 3 8888 1 2 3 3333333 3 00 6 1 0 7777 8 11 11 11 333333 8 7777 8 0 5 44444444444444444444444444444444444444444444444 1 8 8 6 8 11 6666666 33 2222222222222222 0 5 3 3 99 0 444 2 44444444444444444444444444 1 3 0 777 0 0 0 3 0 0 333333333 0 2 66 33 3 2 33 22 3 9 33 66666666666666666666666666666666 0 3 0 2222222 99999 111111 0 0 4444444 0 3 3 0 6 777 1111 33 3 0 2 33 66 1
lowQualScore : . . . .... . . . . . . ... . . . .. ..... .. . . . ..... .... . ....... .. . ... ... .. . . .... ...... . . .. . ... .. .... ... ........................................................................ . ... ..... . ..................... . . .................. . . . . . . ... . . . . . . . ................. . .... .. .. . . .... . . . ....... . .. . . . .... . .. .. .. ...... . .... . . . ............................................... . . . . . .. ....... .. ................ . . . . .. . ... . .......................... . . . ... . . . . . . ......... . . .. .. . . .. .. . . .. ................................ . . . ....... ..... ...... . . ....... . . . . . ... .... .. . . . .. .. .
lowQualScore : 0 6 6 5555 6 6 5 6 6 0 444 6 6 6 77 11111 66 3 6 3 33333 9999 6 0000000 33 4 444 888 00 6 0 1111 888888 4 7 44 9 111 77 1111 666 555555555555555555555555555555555555555555555555555555555555555555555555 5 000 00000 5 888888888888888888888 0 0 222222222222222222 8 0 6 8 8 0 000 0 0 3 3 3 3 3 66666666666666666 5 8888 33 33 3 3 3333 0 0 3 3333333 3 00 7 0 0 0000 0 66 00 00 000000 0 0000 0 8 6 44444444444444444444444444444444444444444444444 0 0 0 0 0 00 0000000 88 2222222222222222 8 0 2 2 00 0 000 5 22222222222222222222222222 0 2 0 555 0 0 0 2 0 0 888888888 2 5 55 88 2 5 88 55 2 8 55 88888888888888888888888888888888 0 2 0 0000000 55555 222222 0 0 8888888 0 2 0 2 5 000 8888 22 2 2 5 88 55 0
consensus : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTA-ATC-ATCTAGAGAACTAA---CT----TGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GCTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG------CGTTGTCTACACC-CTAA----CGCCAATCCAC-TTTTATTTAAAG-------------AC---G--------------A-T------AT---ATATA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCA-TGTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-AT---TAAAG-TGC-ATCTTT-AAAATTCTCG-G-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATT-GGATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGC-ACAC-TTTCCTTCTCATCCAC-GACCTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
Reference ( family-3755 ) : GAACA-AGGTA-CGTT-TTT---GGCCGA-ANTAT-GCCG-CGNTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-GTTNAAAGCC-TAGGATCT--GCACAAT--T-CAA-CGG------TA-TATAATT---TATN--TATGTA-TATTT-AGATTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACGGC-GGCCTNATATACG-CAAGCGTCNTTTTT----TTTCC-AACCCGACGTCAT---------AG---A---C--G----TT-GC------ATCGC---TT------TTC---AT-ACGTT-A-CAATTGTAAAA-T-AGATTTACTACGTT-----TGCTACTT-AT-AT-----A-----C-GAGTTTA-ATC-ATCTA------T-A---CC----TGAAGTAGA-TACGAAATGAAATAGACAAACCT-CACGA---TAATTTAT-ACA-ACACTG-ATAAAAG-CGCA-TTTTTAAG-CTGGG----AAAGATTT----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAANAGCT-TAC-------CT-TATTGAC-GTTATCAANT-ACA--G-TCA-GCTATTGAA--TATTATTTCTAAAGAAGTG--GACAGG------CGTTGTCTACACC-CTAA----CGCCAATCCAC-TTTTATTTAAAG-------------AC---G--------------A-T------AT---ATNTA-G-TAGCCGATG-CTTTC--ACTT-------CGTC--GAATA---------------TACAGTTACAGTACCAGAATGTTGCTGAAATTATATGTAC-TAATCA-TGTCATTATGTA-G-TACCGGCGTTTG-TG-TT----A---TA--------ANACNTGTT-AT---TAAAG-TGC-ATCTTT-AAAATTCTCG-G-GA--GG-----GGGGGGGC-GT--GGAATCATTTTGTGATAA--AGTCATT-GGATGTTGTTGCAATCTTT--------------------------TTAT--TCATTAAAA-TGTTCTATA-TA------TAGTT---ACTTAT-TAAC-TT-CAAGC-ACAC-TTTCCTTCTCATCCAC-GACTTCTTTTTTTCCTTTTATAATA--AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTCTGTTATGAATACANATTATTAAT
gi|1 : GAACA-AGGTA-CGTT-TTT---GGCTGA-ATTAT-GCCG-CGCTT---TTAAA-GT-CCA-TCGAA-CTTAA-----TTGG-CTTCAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGG------TA-TATAATT---CATA--TATGTG-TATTT-AGATTAA-GAA---ATAAAT-AT---TCTACG-TTGAAAACAGC-GGCCTTATATATACCAAGCGTCATTTTT----TTTCG-AACCCAACGTCAT---------AG---A---C--G----TT-AC------ATCGC---TT------TTC---ATGACGTT-----ATT---AAA-T-ACATTTACCACGTT-----TGCTACTT-ATAATATCTAA-----C-GAGTTTACATCGATCTAGAGAACTAA---CC----TGAAGTAGATTACAAAATGAAATAGACAGACCT-CTCGA---TAATTTATAACA-ACACTGAATAAACG-CGCATTTTTTAAGACTGGG----AAAGATTTTTCAAAGAAT--ATTGGTGACGTTTTTCTGTTTTAATCCCGGAACCTAATTGCAAGGATTTTTAATAAACT-TAC-------CT-TATTGGCAGTTATCAAATAACAGGG-TCATGAT-TTGAATCTATTATTTCTAAAGAAGTGCCGACA-G------CGTTGTATACACC-CTAATTTTCCCCAATCCAC-TTCTATTTAAAG-------------AC---G--------------ATT------ATATGATTTA-GCTAGCCGATG-CTTCC--ATTT-------CGTC--GAAT------------------CA-TTACAGTACCAGAATTGTGCTGAAATTATATGTACATAATCA-TGTCATTATGTA-G-TACCGGCGTTTG-TGTTT----A---TA--------AAACTTGTTCAT---TAAAGCTGCTATCTTTAAAAATTCTCG-GTGA--GGGCGGCGGGAGGGCGGT--GGAATCATTTTGTGATAATCAGTCATT-GGATGTTGTTGCAATTTTT--------------------------TTTA--TCATTAAAACTGTTATATATTA------TAGTTTTGATTTATCT--T-TT-CAAGC-ACACTTTTCCTTCTCATCCAC-GACTTTTTTTTTTCTTTTTATGATA--AA-AG-AGCCATTTTTCTTAAT-----AACACCTTGATTCGACGGTTGTCTGTTATGAATACATATTATTAAT
gi|10 : GAACA-AGGTT-CGTT-TTG---GGTTAA-AATAT-GTCA-CGTTC---TTAAA-CT-CCT-TCAAT-TTTAAAGGGGTTGG-GTTGAAAGCC-TGGTATAT--ACACTAT--T-CAA-TGG------TA-TAAAATT---TATC--TA-----------AGG------AA---ATAAAA-CT---TCCACG-CTGAAAACG
gi|11 : tTA-CGTTGTTT---AGCCGA-AATAT-GCGC-CGTTT---TTAAAACT-CCA-AAGAT-CTTAA-----CTGG-GT--AAAATC-T-GGAT-T--GTA-AAT--T-CAA-TGG------TA-TAT-----------------TA-T-TTT-AGATTAA-TGA----TAAAA------TCTACG-CTGAGAAC-GC--GCCT--TATACG-CAtgga
gi|12 : aagacaaattCA-AGACA-CATT-TTT---GGCCGC-GATAT-GCTG-CATTT---TAAAA-CT-CCA-TAAAA-CTTAA-----CTGT-ACTGAAAGCC-TAAGATCG--CCATAAT--T-CAA-TGT------T--T---ATT---TATT--CATGTA-TATTT-AGATTGA-CAATTTAAAAAA-AT---TCCA
gi|13 : AACA-AGGTA-CGTT-TTG---GGCGGA-A-TATCGCCGCCGATCTTGTTAAA-CTCCCATTCAAA-CTTAA-----TTGG-CTTC-AAGCC--AGGATTTAGACACAAT--TCCAA-C-G------TAGGATAACT---Tt
gi|14 : GAACA-AGGTA-CGTT-TTT---GACCGA-ATTAT-GCCG-TGCTT---TTAAA-CT-CCA-TAAAA-CTTAA-----TTGG-CTTGAAAGCC-TAGGATTT--GCACAAT--C-CAA-CGATAGATCTA-TATAATT---CATA--CGTGTG-TATTT-AGATTAcccaacaccatttattcttagtaagg
gi|15 : -ACA--GGCCA-GATATTGAA--TATTATTTCTAAATAAGTG--GACAGG------CGTTGTCTACACC-CTAA----TGCCAATCCAC-TTTTATTCAAAG-------------AC---G--------------A-T------AT---ATTTA-G-TA-CCGATG-TTTTC--ACTT-------CG
gi|16 : A-AGGCAACATT-TTTATTGGC-GATGATAT-GCCG-CAATT---CTAAA-CT-CCA-TAAA--CTTAA-----TTTT-ATTCAGTACA-TAAGATCT--GCACAAT--T-AAATCGT------TA-TCT-ATT---GATA--TA
gi|18 : AAAA-C-AGATTTATTACGTT-----TGCTAC------AT-----A----------TTTA-ATC-ATCTA--------A---CT----TGAAGTAAA-TACTAAATGAAATAGAC-AACCT-CAGGA---TAATTTAT-ACA-ACAC
gi|2 : taAACA-AGGTA-CGTT-TT----GGCTGA-ATTAT-GCCG-CGACT---TTAAA-CT-CCA-TCCAA-CTTAA-----TTGGCTTTCAAAGCCATAGGATTT--CTACAACAAT-CAA-CGG------TA-TATAATTCACTACA--TATGTA-TG-TT-AGATTAAGGAA---ATAAAT-AT---TCTACGTTTGAAAACAGCGGGCCTTATATATACCAAGCGTCATTTTT----TTTTCGAATCCAACGTCAT---------AG---A---C--G----TTGGC------ATCGC---TT------TTC---ATCACGTT-ATTAATTGTAAAA-TAAGATTTACCACGTT-----TGCTACAT-AT-AT-----GATTATCGGAGTTTA-ATC-ATCTAGAGAACT-A---CC----TGAAGTAGA-TACAAAATGAAACAGACAAACCTCCACGAT--TAATTTAT-ACATACACTG-ATAAGAGTCGCA-TTTTTAAG-CTGG------AATATTT----AA-AATAAA-TGGTGACGCTCTTatta
gi|2 : --G-TCA-GCTATTGGA--TATTATTTCTTAAGAAGTG--GACAGG------CGTTGTCTACACCGCGTG----TGCCAATCCACTTTTTATTTA------------------------------------A-T------------TATA-G-TTGCCGATG-ACTTC--ACTT-------CGCCCGGAATA---------------TACA-TTAC----CCAG-ATGTTGCTGAAATTATATGTTT-TAATCATTGTCATTATTGA-G-TACCAGCGTTTGAGG-TTTTCCA---TA--------ACACTTG-T-ATTCATAAAG-TGC-ATCTTT-AA---TCTCGCG-GA--GT-----GGGGG----GC--GGAA-CATTTT-TGATAA--AGTCATTGGGATG-----GCAA---TT--------------------------TTAT--TCATTAAAA-TGTTCTA-A-TA-------AGTT---ACTTAT-C--T-TT-CAAGCAACACATTTCATTCTCATCCACGGAC----TTTTTTTCTTTTATAATA--AAGACAAGCCA---TTCGTAATAAGGCAACACCTTGATTCGAC-G--TTCTGTTATGAATACAGATTATtaggagtttataaattcggaggtcagctattggatattatttcttaagaagtggacaggcgttgtctacaccgcgtgtgccaatccactttttatttaattatagttgccgatgacttcacttcgcccggaatatacattacccagatgttgctgaaattatatgttttaatcattgtcattattgagtaccagcgtttgaggttttccataacacttgtattcataaagtgcatctttaatctcgcggagtggggggcggaacatttttgataaagtcattgggatggcaattttattcattaaaatgttctaataagttacttatctttcaagcaacacatttcattctcatccacggactttttttcttttataataaagacaagccattcgtaataaggcaacaccttgattcgacgttctgttatgaatacagattatc
gi|20 : aacaaggtacgttttggctgaattatgccgcgactttaaactccatccaacttaattggctttcaaagccataggatttctacaacaatcaacggtatataattcactacatatgtatgttagattaaggaaataaatattctacgtttgaaaacagcgggccttatatataccaagcgtcatttttttttcgaatccaacgtcatagacgttggcatcgcttttcatcacgttattaattgtaaaataagatttaccacgtttgctacatatatgattatcggagtttaatcatctagagaactacctgaagtagatacaaaatgaaacagacaaacctccacgattaatttatacatacactgataagagtcgcatttttaagctggaatatttaaaataaatggtgacgctctttaggagtttataaattcggagATAATT---TATT--TACGTA-AATTT-AGATTAA-CAA---TTAAAA-------CTGCG-CTAAAAATGAT-GGCCTGGTATGCG--AAGCGTCTTTTTT----TTTTC-AACCCGAc
gi|21 : GAATA-AGGTA-TGTT-TTT---GGCCGA-ACTAT-GTGA-TTTTT---TTAAA-CG-CCA-TAAA
gi|3 : GTTTA-CTC-ATCTA------G-AGAACTAAAATGAAGTAGA-TAGAAAATGAAATAGACAA-CGT-AGCGAAAATGATTTAT-ACA-ACACTG-ATTAAAG-CGTA-TTTT-AAG-CTTGGTTATATGGAT------AGGAAT--A-TGGTGACGTTTTTATGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAAGAGTTATACAGTGGGACTATATTTAC-TTCGCCAATTTATA----TTA-TC-ATTAAA--TATTATTTTTAAAGAAGTG--GGCAGG------CGTTGTCTACACC-CTAA----TGTCAATCCAC-TTT-ATATACAGTATCACTGCTTTCACTTCG--------------A-TCGAATAAT---ACATATG-TAGCCTACAACTCTCGAACCTACATGTACATT--TACTT---------------TACAGTTACAGTACCAGAATGTTGCGAAAATTATATGTA--TAATCA-TATCATTATGTGTA-TACGGGAGTATG-TG-CG----A---------------ACATGTT-AT---TAAAG-TGC-ATCTTT-AAAATTCTCG-G-GA-----------GGGGGT-GTTGGGAGTTATTTTGTGATAA--AATCATA-GG--GATGTTGCAATCTTT--------------------------TTA---TCATTAAAA-TATTCTATA-AA------TAGTT-----TTAT-TAAC-TTGCGAGT-AAA-----------CATCCAC-GACCTCTTTTTTTCCCTTTATAATAACAA-AT-GGCCA-TTTTCTTAAAAAGACAACACCTTGATTCGACGT--GTCTG-TATGAATACAGATTAT
gi|4 : ----AAGAAT--A-TGGTGACGTTTTTCTGTTC--ATCCCGAA--CTAA-TG-AAGG----TTAAATA-CT-TAC-------CT-TTATGA--GTTAT-AAGT-ACAT-G-TCA-GCTATCGAA--AATTATTTCTAAAGAAGTG--GACAGGCGTTAACGTTGTCTACACC-CTAA----CGATAATCCAC-TTTTATTTAAAG-------------AC---GGTATACATGTATCTA-T------AT---ATATA-G-T-GCCGATG-CTTTC--ACTT-------CGTC--GAATACGAACCTCGATCCTTTGCAGTTACAGTACCAGAATGTTGCTGAAATTCTATGTA--TAATCA-TGGCATTATGTA-GATA-CGGCGTTTG-TA-TT----AATCTAGTATGTGCGTACATGTT-AA---TAAAG-TGC-ATCTTT-AAAATTCACG-G-GAGTGG-----GAGGGGGG-GT--GGAATCATTTTGTGATCA--AATCATT---ATGTTGTTGCAATCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCTCATTAAAA-TGTTCTATA-TATACATGTAGTT-----TTAT-TAACTTT-CAAGC-ACAC-TTT-CTTCTCATCCAC-G---TCTTTTTTT-CTTTTATAAT---AA-AT-AGCCA-TTTTCTTAATAAGGCAACACCTTGATTCGACGG--GTATGT--TGAATACATATTATTAATatattaatgtaaaatatcaaaatgttatcagctcttgctatctctaaagttcagaacaaaatattataaccttgg
gi|5 : AACACGGGTA-CGTT-TTA---GCCTCA-AATAT-GCCT-TTGTT---TTAAA-CT-TAA-TAAAAACTTAA-----CTAC-GTTAAATGTC-TAGAATCT--GCACAAT--C-TAA-TGG------TG-TATAATT---TATT--TATGT--TATTC-AGATTTA-CAA---ATAAAACATAGATCTACA-CTTA----------TTTCAT-TTC-----GCGTCGCTTTT----TGT---AACCCGACGTCAC---------GGAATA---C--GGGGATT-GCAGCGTGATCGCGATTT------CTC---AT------------TTGTAAAATT-AGATTTATTATATT-----Tgtaaaaatatcgaaatgttatcaggctcttgctacagaatgtgtataaccttggac
gi|6 : AATT---TATTGGTATATAATATTT-AGATTTA-CAA---ATAAAA-CT---TGCACG-CTGAAAACGAC-AGTTTTATATACA--AAGCATAATTTCT----TTT---AACCCAATGTCATTGTATGTACAG---AATTC--A----TG-GA------ATTGC---TCAGGGCATTCGCAAT-TTGTTAA-CAATTGTAAAG-C-AGATTTACTACGTTAGTAGTG-TACTTGGC-AT-----------C-GAGTTTA-ATC-ATTTA------TAA---CT----TGA-----A-TATGAAATTGAATAGATAAA-TT-CACGA---atcatgtatttgg
gi|8 : GAACA-AGGTA-CGAT-TTT---GGCCAA-ATTTT-GCTG-CCCTT---TAAAA-CT-CCA-TAAAT-CTCAC-----TTGT-GTGAAAAGCC-T---------------------AA-TGG------TT-TAAAATT---TGAT--TATGTA-TATTTAAGATTAA-CTA---TCAAAA-CT---TCTACG-CTGAAAACGGC-GACCTAAAATACA--AAGTGTACTTTTT----TCCCC-AACCCGACGTaca
gi|9 : TAA-----T-GG-GTTGAAAGCC-AAATGTCT--TCACCAT--T-CAG-CA-------T--TATAATA---TATC--AATGTA-TATCT-ACTTTAA-CAA---ATAAAA-AT---TCTACG-CTGAAAACTGC-AGACTCATATAGG-CAAAC-----TTTTAAAATTCCT-AAACCAACATCAT---------A----A---CAAG----TT-CC------AT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAGAACTATCCATGTTTTTTTTAATTTGGAATACAGAATAAATAATGGCCATTTCGTAAAAATATAACAATATCTCATCCGTCCCCGAATCTACGTGTCAGCATAGATTAATATCAGATTTACATTTTATATACCGCTGTAAAATATGAAAACGTTATCGTCGCTAGTTGCCTTTCAATTACAGAGAAATTGTTCATAACCT
Unaligned ( gi|17 ): TCGCAATCCCATTTTGCAGTTCCACTACCAAGATGTTGTGAAAAATAATTATGGTGCAAAGACGCTGTTTGATTTAACTTCTATGTGCGTGCGTGCCAATA
Unaligned ( gi|19 ): TGTATGTACAGAATTCCATTCGCAAGTTGATATCAATTGTAAAACTTTAATAGTACATTAGTTGTATATTTGCCAGTGAGTTTAATCACTTAAAA