lowQualScore : 333333 111 1111111111 22222222222222 111 222222222 111 1 11 11 1 1 222222 11111 44444444 1111 111 222222
lowQualScore : 4 55 3 4 4 0 777777 55 666 8 777 0000000000 777 66666666666666 66 1 777 4 1 7 1 1 66 2 555 5 5 66 66 5 3 5 5 5 5 5 0 5 0 0 77777 2 1 4 5 5 5 5 5 777777777 66666 3 111 1 11 5 44 1 1 66 5 5 888888 999999 6 5 0 2 0 5 0 5 22222 1 22222222 2 5 5 5 999999 1 5555 111 000000
lowQualScore : . .. . . . . ...... .. ... . ... .......... ... .............. .. . ... . . . . . .. . ... . . .. .. . . . . . . . . . . . ..... . . . . . . . . ......... ..... . ... . .. . .. . . .. . . ...... ...... . . . . . . . . ..... . ........ . . . . ...... . .... ... ......
lowQualScore : 4 00 3 0 0 9 888888 55 555 0 000 4444444444 000 11111111111111 33 3 888 4 4 9 4 1 99 5 333 0 0 99 99 0 2 0 0 0 0 0 2 7 9 1 55555 0 4 9 0 0 0 0 7 111111111 33333 6 888 6 00 0 22 4 4 99 0 0 888888 666666 0 0 1 5 4 0 8 0 55555 7 88888888 7 0 0 7 555555 0 2222 777 888888
consensus : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CA-GTG-TAG--TTTA--CAT---TTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTA-N-ATC-ACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGAAAATGAATTTCATCTTCA-ATCACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATGA-GTGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTACTAAGAGAGGA----T---CTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTT-CTTGTG---TAT----ATTTTTTTTATAAA
Reference ( gi|6 ) : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CA-GTGTTAA--TTTA--CAT---TTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTCACTGT--AATTTTTAAGACTTTGTGTA-A-ATC-ACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ACCACAACAGC-ATT-GCA-AATATTGCAACGTCTT--TGCTTC-AATGAAGTCGAAT---T--ATATCTGCC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA----A---CTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
gi|10 : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CA-GTGC-GG--TTTA--CAT---TTTT-T-AT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTAACCGT--AATTTTTAAAATTTTGTGTA-T-ATC-ACTGTTCAAATA-TATTTTT--AAAAC-ATGTAACTT-CA-TTGTCAAG-AACT-AATAT-TTCTCT-TGTTATGTTTATAAACATTTC-----------------C-TTA-GC-TTAGAAT-AGGATTTTA--------AAATAAAA-AA--AAATGA-TTTCATCTTCA-ATCACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATGATGTGGAAT---T--ATAT-TACC-ACTTTCTATTGCCAGCT-TATGAGCA-TCA
gi|11 : tACAAATAAAAATA-TTTATTGGCACAA------TTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATATGG-CA-GAGTTTACTTTTC--TTT---TTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTTTT---CAAAACAAGTCTTTGATACATTTCACCGT--AATTTTTAAAACTTTGTGTA-T-ATC-ACTGTTCAAATA-CATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTGTCTGTGTTATGTT-ATAAATATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGtcagt
gi|20 : atgtatatattatatatatacatatagttttggaagtctgtcgatttctagacctaacttacagatacacgatattaaagcaaacaattttaacatttgggaatttattagattACAAATACAAAAA-T--------ACAGTTACA-TCACAAT--AATTGGCAAAGGTCTATTGA-ACAGCATT
gi|1 : atCAAATGTAAATA-TTTCCTGGTACAGACACAATTACAAT--AATCAACAAAACCCAATAGA-ACACCA-------------TAA-----A--TAT---TTGT-TT-T---GTAATTTCAAGTACACATGTACAT--------------GACT--TGTATT---C-----------------AATTTCACAGT--AATTTTCAATGCCTTGTGTA-caaagattactgtttata
gi|3 : AAATACAAATAATTTATTGGTACA--CGTAA----AATGGAATT----AAGGCCCATTGATACATCATTTAGACACATGTT------TA--CATA--TCTT-TTATCCGGGAAT----AG----CATGG---TACATGTAATGCTGAGACTCTTGTGTT---CAAAACA-GTCTTTAATG---TTCACCGTTAAATTTTAAAAGCTTTGTGCG-T-ATC-ACTGTTCAAATA-TATTTTTTAAA--CAATGT-ACTTTCATTTGCCCAA-A-CTGAATAT-CATTCTG-GTTATGTT-ATAAATGTTTCTAACGGGTTGGGCATCTC-TTAGGC-TTA-AATAAAGATTT-A--------CAATGAAACAAGAAAATGAGTTTCACATTAA-TCAACACCAGTGATT-ACA-TAAATC-CAACATCTTTCTGATTT-------GTGGAAT---TTAATATCTACC-ACTTTCTAT-----GTT-TATGTG-ACTCAATC-TAC-----ATTTACTAAGAGAGGA----G---CTCTCAAATCGTTT--AGGATAA-ATC-AACATT--ATGGACTTCTTCT--TTCTA---TAGCAAAATTTTTGTTA-AAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaacaccactattaaaatatatgttttcattgtctagagtaatatattttttgtgttatgttataaatgtttctaatgtaggtgtttcgtagcttagaatgaaatttaacaatgagaaagaaagaggatttcatcttcaaaaacaacagtaatgcaaacatttcgacatcgttgattcaatgatatggactgcctatttctactactttaatggaactatatgtgcacgcaatataatgtttttctactaagagatgatttatcagatctttttctgagtaaatcaatatttcttgcgtattttttttatatgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|8 : AATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CA-GTG-TAA--TTTA--CAT---TTTTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATATTTCACTGT--AATTTTTAAGACTTTGTGTA-A-ATC-ACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-GTCACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAAGTGGAAT---T--ATATCTACC-ACTTTCTATTGCAAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA----T---CTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-taaaatttcaattatttttttttttagccaaagtctttaagattgattgctcctgagtggcactggtcaacttagtgatctttgtttttatgtttggttaaagttgtgaattgaatttttatatttttgtaatgtccagaaat
gi|9 : ATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CA-GTGTTAA--TTTA--CAT---TTTTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATATT-CACTGT--AATTTTTAAGACTTTGTGTA-A-ATCCACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAAC-TTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-A-GGAAATGAATTTCATCTTCA-GTCACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAAGTGGAAT---T--ATATCTACC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA----T---CTCTCAGATTTTTTTCTGAGTAA-ATC-A
gi|21 : TACAACTA-CTTAATGACCCAAACACGA----------ATTGGCAAAGGCCCATTGA-GTATCAT
gi|4 : acaaatcaattttttttatACACATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CA-GTG------TTTAGGGAT---TTTT-TTAT---GTAAT----AG----CATGT---T--------------GAT-------TT---CAAAACA-GTCTTCNNNNNNNNNNNNNNN--NNNNNNNNNNACTTTGTGTATG-ATC-ACTGTTCCAATATTATTTTG--AA--C-ATGCACTTTTCA-TTGTAATGAA-CT-AATAT-TTGTCTGTGTTATGTT-ATAA--ATTTCTAA-GG--T-GGCATTTCATTA-GCATTAGAAT-AGGATTT-A---------AATGAA-----------------ATCTTCACATCACACCAGT-ATTGGCACCATATTGCAAC--TTT--TGATTCTAAT---------T---T--ATATCTACCAACTTTCTATTGCCAGC--TATGAGCACTCAATCATAA-----TTTTGATATGAAGGGATTG-AGTTCTCTCAGA-CTTTTTCTGAGTAATATCAAACA-T--ATGAACTTTTTTTACTTGTGGATTAT----AGATTTTTTATAAA
gi|17 : ATTGCCATAAACACAATTAAAAT--AA-TGACAAAAGCCCA-TGG-ACA-CATTTGC-AA-GTG---G--TTTA--CATTA-TTTT-TTAT---GTTAT----A-----TATGT---ttcaaggtttttttaatccaaaaatttttgtatgatgtgctcttggtgcactggtcaattaattcttttgtttttatgtttggtaaaaaggtgttgatattggattt
gi|15 : ctacatactgtcaACACAATTAAAAT--ACTTGACAAAG--CCATTGG-ACATCATTT-G-CA--TG------TTTA--CATTTATTTT-TTAT---GTAAT------------CGG---T--------------GATT----CACTTGGCAGAAAA-GT-TTTGA-AAATTGGACTAC--AGTTT
gi|22 : GGCCCATTGA-ACATCATTTGG-CA-G----AG--TTTA--C-T---TTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-aaaag
gi|18 : TTTTAAAACTTTGTGTA-T-ATC-ACTGTTCAATTA-TATTTTT--AA--C-ATGTAACTTTCG-TTGTCAAA-A-CT-AATAT-TTCTCTGTGTTATGT
gi|1 : CTTTTT-TA-ACACC-ACTATTAAAATA-TAT--------------GT---TTTCA-TTGTCTAG-A-GT-AATATATTTTTTGTGTTATGTT-ATAAATGTTTCTAA-TG--TAGGTGTTTC-GTA-GC-TTAGAAT-GAAATTT-AA-------CAATGAGA-AAGAAAGAGGATTTCATCTTCA-AAAACAACAGT-AAT-GCA-AACATTTCGACATCGT--TGATTC-AATGATATGGACTGCCT--ATTTCTACT-ACTTTA-ATGG--AACTATATGTGCACGCAATA-TAATGTTTTTCTACTAAGAGATGA----T---TTATCAGATCTTTTTCTGAGTAA-ATC-AATA-T--------TTCT--------TG---CGT----ATTTTTTTTATA
gi|19 : caaatgtaaatatttcctggtacagacacaattacaataatcaacaaaacccaatagaacaccataaatatttgttttgtaatttcaagtacacatgtacatgacttgtattcaatttcacagtaattttcaatgccttgtgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttAGACATTCTT-------TAGA-ATGTC-TTA-GC-GTAGGGC-GAGATTT-ATGTACATACAATGAAA-AAGAAAATGAATTTTATCTTCtgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|12 : gcCACACCATT-GTT-ACA-CATATTGCAACATCTT--TGATTC-AAT-------------------TCTACC-ACTTTCTATTGCCAGCT-TATGAACACTCAATC-TAA-----TTTTACTAAGAGAGGA----T---CTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGAATTTCTTTTACTTGTG---TAT----A-ATTTTTAATAAAggtc
gi|13 : -ATT-GCA-AACATTACA---TCTT--TGATTC-AATGATCTGAAAT---T--ATATCTACC-AATTTCTATTGCAAGTT-TATGTGCACTCAATC-TAA-----TAGTACTAAGAGAGGA----T---CTCTCAGATCGTTTTCTGAGTAA-ATC-AACA-TGCAT------------CTTGTG---TAT----AATTTATATATatccaaggtttttttagccaaagattattgatgattgctcctgactgcactggtcaattattctttgttttatgtttggtaaaaggtgttgaattgaatttatatattttgtaatgtttgaaaatccaagattatccagaatagaaaatattttcgtagtccaagcattgtggtcacttgtggattgataaagtttaa
gi|24 : attGCACTCAATC-TAA-----TTTTACTAAGAGAGGATCTGAGTTCTCTCAGATCTTTTTCTGAGTAA-ATC-Agtatatatatataaaactcaagggttttttaaccaaggatttgtgatgatagctcttgagtgcactggtcaattattttttgttcagttatgtttgataaaaagtgttcaattgaatttttat
gi|28 : TTTTCTAAGAGAGGA----T---CTCTCAGATCTTTTTCTGA
gi|2 : -T--ATGGACTTCTTTTTCTTGTG---TAT-----TTTCTTTTTTAAA
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): GTTTTTTTTTAAACCAAAGATTTTTGATGATTGCTCCTGAGTTGCACCTGGTCAAATTATTCTTTGTTTTTATGTTGGTAAAGGTGTTGAATTGAATTTTTATATTTTGTAATGTTTGAAAATCCAAGATTATCTAGATAGAAAATATTTTCATACCAAGCACTTGTGGTCACTTGTGGATTGATAAAGTTTGTAAAAGCCAAGAACAGCGTTACGAGATATTCCATATTTGATACTCGAAATGAAATTGGACCAAAGTGGCAGTCTATTGAGTTCTGCTAGACAATCATATGGATGATTTGCAGTGCACTCCGAGGATATCTCTAATAAATTTTAAGTGAGATTTTTCTATGTTTGAAACATCTTTGGATGAGAGATCCATTCCCCATATTTCATTACAATAAAGAAGAACTGATAGTACAATAGCATCAAAAAGTTTTTCTAATAGTTTACATGGATTTTCATTTTAAAGCATGCTTTTCTGGCTTTTTCAATAAGCACAGCTGTTGCTATAAGTTCTAAATATTGCATCT
Unaligned ( gi|7 ): CTTGTGTATAATTTATATATGTATATATATATAAAACTCAAGGGTTTTTTAACCAAGGATTTGTGATGATAGCTCTTGAGTGCACTGGTCAATTATTTTTTGTTCAGTTATGTTTGATAAAAAGTGTTCAATTGAATTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTACAGTGCACTCCGAGGATATCTTTTATGAATTTTTAAAGTGAAATTTTTCTATGTTTCAAACACCTTTGGATGAGAGATCCACCCCCTCTATGTTTCTCTACAATAAGAAGAATTGAAAGTGCAATAACATAAAAAA
Unaligned ( gi|14 ): AAGAAAAAAAGCCCAAATGAAGAGACGTTAAAATATTAGAATCTAGATGGTTCCAATATTCTACTGCGAGAATGAAATTTTGAACCAAGTGCAAGTCTATTAAGTTTCTGCTAGACAGACCAGGCATTGGATGTCTTTTGCCCGTGCACTTGCCGAGGATTTTTATAAATTTTTACGTGAATTTTTTTT
Unaligned ( gi|16 ): CATGTATTGTTGTACATGTATATAACAACATCTGCAAGTTTACTGAATGGCGTACTTTCATCTCTTCTATAGATTAAAAATATTCCCATTTTTTAATAAAT
Unaligned ( gi|23 ): TATCTAGAATAGAAAATATTTTCATAGTCCAAGTAATTGCAGCATGGTGCACTTGTGGATTGGTAAAG
Unaligned ( gi|25 ): CCTCATAGTTTAAGCATTGTGGTCACTTGTGAATTGGTAAAGTTTAAAAAT
Unaligned ( gi|26 ): CATCAAAAAGTTTTTCAAAAAGTTAACGTGGATTATCAATACCAATA
Unaligned ( gi|27 ): GCTGTTGCTAAGTTAAACCTCCCATTATATTTCAT
Alignments
lowQualScore : 222222 111 111111 22222222222222 11 22222222 222222 11111 2222222 2 111 111111
lowQualScore : 4 44 3 3 999999 55 555 000000 7 666 7777777777 666 33333333333333 2 3 777 4 0 6 0 1 66 55 4 4 22 4 1 4 4 4 4 4 4 99 5 66 2 2 4 4 4 4 5 33333333 3 5 5 4 4 4 44 3 66 4 999999 777 66 4 1 4 4 00000 1 4444444 4 4 66 1 3 2 000 555555
lowQualScore : . .. . . ...... .. ... ...... . ... .......... ... .............. . . ... . . . . . .. .. . . .. . . . . . . . . .. . .. . . . . . . . ........ . . . . . . .. . .. . ...... ... .. . . . . ..... . ....... . . .. . . . ... ......
lowQualScore : 0 66 1 6 777777 00 000 555555 3 444 7777777777 444 55555555555555 3 0 000 0 2 9 2 1 11 44 4 4 22 4 9 4 4 4 4 4 4 66 0 99 0 6 4 4 4 4 0 11111111 1 0 0 4 4 4 66 9 11 4 777777 888 11 4 1 4 4 00000 9 5555555 4 4 44 7 0 9 000 333333
consensus : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTAC--AT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATAT-ATTTTT--AAC-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATG-TTATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGA-TTTA--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATTG-CAC-ATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACCA-CTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-TATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
Reference ( family-3657 ) : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTAC--AT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAN-AT-CACTGTTCAAATAT-ATTTTT--AAC-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATG-TTATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGA-TTTA--------CAATGAAA-AAGAAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATTG-CAC-ATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACCA-CTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTACTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-TATGGACTTCTTTT-CTTGTG---TAT----ATTTTTTTTATAAA
gi|1 : CAAATGTAAATA-TTTCCTGGTACAGACACAATTACAAT--AATCAACAAAACCCAATAGA-ACACCAT------AA---------AT--AT---TT------GT-TT-T---GTAATTTCAAGTACACATGTACAT--------------GACT--TGTATT---CA-----------------ATTTCACAGT--AATTTTCAATGCCTTGTGTA
gi|1 : AC-AC-CACTATTAAAATAT-AT------------GT---TTTCA-TTGTCTAG-A-GT-AATATATTTTTTGTGTTATG-TTATAAATGTTTCTAA-TG--TAGGTGTTTC-GTA-GC-TTAGAAT-GAAA-TTTAA-------CAATGAGA-AAGAAAGAGGATTTCATCTTCA-AAA-ACAACAGT-AATG-CAA-ACATTTCGACATCGT--TGATTC-AATG-ATA-TGGACTGCCT--ATTTCTACTA-CTTTA-ATGG--AACTATATGTGCACGCAATA-TAATGTTTTTCTACTAAGAGATGA-------TTTATCAGATCTTTTTCTGAGTAA-ATC-AATA------------TTT-CTTGCG-----T----ATTTTTTTTATAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaacaccactattaaaatatatgttttcattgtctagagtaatatattttttgtgttatgttataaatgtttctaatgtaggtgtttcgtagcttagaatgaaatttaacaatgagaaagaaagaggatttcatcttcaaaaacaacagtaatgcaaacatttcgacatcgttgattcaatgatatggactgcctatttctactactttaatggaactatatgtgcacgcaatataatgtttttctactaagagatgatttatcagatctttttctgagtaaatcaatatttcttgcgtattttttttatatgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|10 : caaatgtaaatatttcctggtacagacacaattacaataatcaacaaaacccaatagaacaccataaatatttgttttgtaatttcaagtacacatgtacatgacttgtattcaatttcacagtaattttcaatgccttgtgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGC-GGTTTAC--AT---TT------T--TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTAACCGT--AATTTTTAAAATTTTGTGTAT-AT-CACTGTTCAAATAT-ATTTTTAAAAC-ATGTAAC-TTCA-TTGTCAAGAA-CT-AATAT-TTCTCT-TGTTATGTTTATAAACATTTC-----------------C-TTA-GC-TTAGAAT-AGGATTTTA--------AAAT--AA-AAAAAAATG-ATTTCATCTTCA-ATC-ACACCAGT-ATTG-CAC-ATATTGCAACATCTT--TGATTC-AATG-ATG-TGGAAT---T--ATAT-TACCA-CTTTCTATTGCCAGCT-TATGAGCA-TCAtgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|11 : tACAAATAAAAATA-TTTATTGGCACAA------TTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATATGG-CAG----AGTTTAC--TT---TTCTTTTTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTTTT---CAAAACAAGTCTTTGATACATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATAC-ATTTTT--AAC-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTGTCTGTGTTATG-TTATAAATATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGtcagt
gi|12 : atgtatatattatatatatacatatagttttggaagtctgtcgatttctagacctaacttacagatacacgatattaaagcaaacaattttaacatttgggaatttattagattC-ACACCATT-GTTA-CAC-ATATTGCAACATCTT--TGATTC-AAT---------------------TCTACCA-CTTTCTATTGCCAGCT-TATGAACACTCAATC-TAA-----TTTTACTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-TATGAATTTCTTTTACTTGTG---TAT----A-ATTTTTAATAAA
gi|13 : T-ATTG-CAA-ACATT---ACATCTT--TGATTC-AATG-A-TCTGAAAT---T--ATATCTACCA-ATTTCTATTGCAAGTT-TATGTGCACTCAATC-TAA-----TAGTACTAAGAGAGGA-------TCTCTCAGATCGTTTTCTGAGTAA-ATC-AAC---ATGCA-------T-CTTGTG---TAT----AATTTATATATatccaaggtttttttagccaaagattattgatgattgctcctgactgcactggtcaattattctttgttttatgtttggtaaaaggtgttgaattgaatttatatattttgtaatgtttgaaaatccaagattatccagaatagaaaatattttcgtagtccaagcattgtggtcacttgtggattgataaagtttaa
gi|15 : atACACAATTAAAAT--ACTTGACAAAG--CCATTGG-ACATCATTT-G-CA-T----GTTTAC--ATTTATT------TT-TTAT---GTAAT------------CGG---T--------------GATT----CACTTGGCAGAAAA-GT-TTTGA-AAATTGGACTAC--AG--TTTAAAAgtatatatatataaaactcaagggttttttaaccaaggatttgtgatgatagctcttgagtgcactggtcaattattttttgttcagttatgtttgataaaaagtgttcaattgaatttttat
gi|17 : ATTGCCATAAACACAATTAAAAT--AA-TGACAAAAGCCCA-TGG-ACA-CATTTGC-AAGTG---GTTTAC--ATTA-TT------TT-TTAT---GTTAT----A-----TATGT---g
gi|18 : ctacatactgtcaTTTTAAAACTTTGTGTAT-AT-CACTGTTCAATTAT-ATTTTT--AAC-ATGTAACTTTCG-TTGTCAAA-A-CT-AATAT-TTCTCTGTGTTATG-T
gi|19 : ATGTC-TTA-GC-GTAGGGC-GAGA-TTTATGTACATACAATGAAA-AAGAAAATGAATTTTATCTTCG-GTC-
gi|2 : gcagacattctttaga-TATGGACTTCTTTTTCTTGTG---TAT-----TTTCTTTTTTAAA
gi|20 : ACAAATACAAAAA-T--------ACAGTTACA-TCACAAT--AATTGGCAAAGGTCTATTGA-ACAGCATTataaaattcaagtttttttttataaccaaagatttttttaatggttgctccagattgcactagtctgttttatgtttggtaaaaggtgttgaattggactgatttttatattttgtaatttttgcctcggaaaatccaagattatctagaatagaaaatattttcctagttcaagtattgtagtcacttgtggataggtaaagattttaaaaacgccaaagaaccatacgttaatgatcagatgattccagtatttgaaaatacttctgagaatgaaattttggaccaaagtggcaagttctgccagacaaccagcattggatgttttacagtgcactccgaggatatctttaataaattttaagtgaaatttttctatgtttgaaacatcttaaaaatgaatgaaagtttccccatgtatttcactgcaatagtacaacagcattaaaaagtttttctataagtttacatgggttatcaataccaatatttcttttcattttaaaacatgcttttctggctttttcaataagcacagctgttgctaagttaaacctcccatttcatttcatcattcataacacccaactagcagtattttggtacaatttgtattgtattgccattaattataaaatcattcccttgaggtttgccatttgagttaaatatcaaaactctggatttacctacgttgacctgcagtttccagtttgaacaatagcctatttgctgaaaatatcaagaccgttttgtaaatcacttttgctttcagaaaagattaaaatatcatcagcatataacagtat
gi|21 : atTACAACTA-CTTAATGACCCAAACACGA----------ATTGGCAAAGGCCCATTGA-GTATCATcaaagattactgtttata
gi|22 : acaaatcaattttttttatGGCCCATTGA-ACATCATTTGG-CAG----AGTTTAC---T---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-
gi|24 : GCACTCAATC-TAA-----TTTTACTAAGAGAGGATCTGAGTTCTCTCAGATCTTTTTCTGAGTAA-ATC-A
gi|28 : -----TTTT-CTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGA
gi|3 : AAATACAAATAATTTATTGGTACA--CGTAA----AATGGAATT----AAGGCCCATTGATACATCATTTAGACA-CAT--GTTTAC--ATA--TC------TT-TTATCCGGGAAT----AG----CATGG---TACATGTAATGCTGAGACTCTTGTGTT---CAAAACA-GTCTTTAATG---TTCACCGTTAAATTTTAAAAGCTTTGTGCGT-AT-CACTGTTCAAATAT-ATTTTTTAAACAATGT-ACTTTCATTTGCCCAA-A-CTGAATAT-CATTCTG-GTTATG-TTATAAATGTTTCTAACGGGTTGGGCATCTC-TTAGGC-TTA-AATAAAGA-TTTA--------CAATGAAACAAGAAAATGAGTTTCACATT-A-ATCAACACCAGTGATTA-CAT-AAATC-CAACATCTTTCTGATTT--------G-TGGAAT---TTAATATCTACCA-CTTTCTAT-----GTT-TATGTG-ACTCAATC-TAC-----ATTTACTAAGAGAGGA-------GCTCTCAAATCGTTT--AGGATAA-ATC-AACATTATGGACTTCTTCT--TTCTA---TAGCAAAATTTTTGTTA-AAA
gi|4 : ACACATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT----TTAGGGAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTC----------AAAACA-GTCTTCNNNNNNNNNNNNNNN--NNNNNNNNNNACTTTGTGTATGAT-CACTGTTCCAATATTATTTTG--AAC-ATGCACTTTTCA-TTGTAATG-AACT-AATAT-TTGTCTGTGTTATG-TTATAAA--TTTCTAA-GG--T-GGCATTTCATTA-GCATTAGAAT-AGGA-TTTA----------------------AATGAA----ATCTTCACATC-ACACCAGT-ATTGGCACCATATTGCAAC--TTT--TGATTCTAAT-----------T---T--ATATCTACCAACTTTCTATTGCCAGC--TATGAGCACTCAATCATAA-----TTTTGATATGAAGGGATTGAGT-TCTCTCAGA-CTTTTTCTGAGTAATATCAAACA-TATGAACTTTTTTTACTTGTGGATTAT----AGATTTTTTATAAAtaaaatttcaattatttttttttttagccaaagtctttaagattgattgctcctgagtggcactggtcaacttagtgatctttgtttttatgtttggttaaagttgtgaattgaatttttatatttttgtaatgtccagaaat
gi|6 : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTAC--AT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATAT-ATTTTT--AAC-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATG-TTATAAACATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGGA-TTTA--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ACC-ACAACAGC-ATTG-CAA-ATATTGCAACGTCTT--TGCTTC-AATGAA-G-TCGAAT---T--ATATCTGCCA-CTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------ACTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-TATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAAttcaaggtttttttaatccaaaaatttttgtatgatgtgctcttggtgcactggtcaattaattcttttgtttttatgtttggtaaaaaggtgttgatattggattt
gi|8 : AATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AATTTAC--AT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATAT-ATTTTT--AAC-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATG-TTATAAACATTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGA-TTTA--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATTG-CAC-ATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACCA-CTTTCTATTGCAAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-
gi|9 : ATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTAC--AT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATA-TTCACTGT--AATTTTTAAGACTTTGTGTAA-ATCCACTGTTCAAATAT-ATTTTT--AAC-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATG-TTATAAAC-TTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGA-TTTA--------CAATG-AA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATTG-CAC-ATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACCA-CTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-A
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTTTTTTTAAACCAAAGATTTTTGATGATTGCTCCTGAGTTGCACCTGGTCAAATTATTCTTTGTTTTTATGTTGGTAAAGGTGTTGAATTGAATTTTTATATTTTGTAATGTTTGAAAATCCAAGATTATCTAGATAGAAAATATTTTCATACCAAGCACTTGTGGTCACTTGTGGATTGATAAAGTTTGTAAAAGCCAAGAACAGCGTTACGAGATATTCCATATTTGATACTCGAAATGAAATTGGACCAAAGTGGCAGTCTATTGAGTTCTGCTAGACAATCATATGGATGATTTGCAGTGCACTCCGAGGATATCTCTAATAAATTTTAAGTGAGATTTTTCTATGTTTGAAACATCTTTGGATGAGAGATCCATTCCCCATATTTCATTACAATAAAGAAGAACTGATAGTACAATAGCATCAAAAAGTTTTTCTAATAGTTTACATGGATTTTCATTTTAAAGCATGCTTTTCTGGCTTTTTCAATAAGCACAGCTGTTGCTATAAGTTCTAAATATTGCATCT
Unaligned ( gi|7 ): CTTGTGTATAATTTATATATGTATATATATATAAAACTCAAGGGTTTTTTAACCAAGGATTTGTGATGATAGCTCTTGAGTGCACTGGTCAATTATTTTTTGTTCAGTTATGTTTGATAAAAAGTGTTCAATTGAATTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTACAGTGCACTCCGAGGATATCTTTTATGAATTTTTAAAGTGAAATTTTTCTATGTTTCAAACACCTTTGGATGAGAGATCCACCCCCTCTATGTTTCTCTACAATAAGAAGAATTGAAAGTGCAATAACATAAAAAA
Unaligned ( gi|14 ): AAGAAAAAAAGCCCAAATGAAGAGACGTTAAAATATTAGAATCTAGATGGTTCCAATATTCTACTGCGAGAATGAAATTTTGAACCAAGTGCAAGTCTATTAAGTTTCTGCTAGACAGACCAGGCATTGGATGTCTTTTGCCCGTGCACTTGCCGAGGATTTTTATAAATTTTTACGTGAATTTTTTTT
Unaligned ( gi|16 ): CATGTATTGTTGTACATGTATATAACAACATCTGCAAGTTTACTGAATGGCGTACTTTCATCTCTTCTATAGATTAAAAATATTCCCATTTTTTAATAAAT
Unaligned ( gi|23 ): TATCTAGAATAGAAAATATTTTCATAGTCCAAGTAATTGCAGCATGGTGCACTTGTGGATTGGTAAAG
Unaligned ( gi|25 ): CCTCATAGTTTAAGCATTGTGGTCACTTGTGAATTGGTAAAGTTTAAAAAT
Unaligned ( gi|26 ): CATCAAAAAGTTTTTCAAAAAGTTAACGTGGATTATCAATACCAATA
Unaligned ( gi|27 ): GCTGTTGCTAAGTTAAACCTCCCATTATATTTCAT
Alignments
lowQualScore : 333333 111 111111 22222222222222 22222222 222222 11111 2222222 111 111111
lowQualScore : 4 44 3 3 444444 55 555 000000 7 666 7777777777 666 33333333333333 4 0 777 4 0 6 0 1 66 44 4 4 66 66 4 1 4 4 4 4 4 5 99 5 66 2 2 4 4 4 4 5 33333333 5 2 2 5 4 4 4 44 3 66 4 999999 777 66 4 1 4 4 11111 0 4444444 4 4 5 77 22 1 8 000 555555
lowQualScore : . .. . . ...... .. ... ...... . ... .......... ... .............. . . ... . . . . . .. .. . . .. .. . . . . . . . . .. . .. . . . . . . . ........ . . . . . . . .. . .. . ...... ... .. . . . . ..... . ....... . . . .. .. . . ... ......
lowQualScore : 0 66 1 6 222222 00 000 555555 3 444 7777777777 444 55555555555555 7 3 000 0 2 9 2 1 11 33 4 4 11 11 4 9 4 4 4 4 4 0 66 0 99 0 6 4 4 4 4 0 11111111 0 2 0 0 4 4 4 66 9 11 4 777777 888 11 4 1 4 4 11111 5 5555555 4 4 0 99 44 4 6 000 333333
consensus : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
Reference ( family-3657 ) : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
gi|1 : CAAATGTAAATA-TTTCCTGGTACAGACACAATTACAAT--AATCAACAAAACCCAATAGA-ACACCAT------AA---------A--TAT---TT------GT-TT-T---GTAATTTCAAGTACACATGTACAT--------------GACT--TGTATT---CA-----------------ATTTCACAGT--AATTTTCAATGCCTTGTGTAT-
gi|1 : AC-AC-CACTATTAAAATA-TAT--------------GT---TTTCA-TTGTCTAG-A-GT-AATATATTTTTTGTGTTATGTT-ATAAATGTTTCTAA-TG--TAGGTGTTTC-GTA-GC-TTAGAAT-GAAATTT-AA-------CAATGAGA-AAGAAAGAGGATTTCATCTTCA-AAA-ACAACAGT-AAT-GCA-AACATTTCGACATCGT--TGATTC-AATG-ATA-TGGACTGCCT--ATTTCTACT-ACTTTA-ATGG--AACTATATGTGCACGCAATA-TAATGTTTTTCTACTAAGAGATGA-------TTTATCAGATCTTTTTCTGAGTAA-ATC-AATA-T--------TTCT--------TG---CGT----ATTTTTTTTATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaacaccactattaaaatatatgttttcattgtctagagtaatatattttttgtgttatgttataaatgtttctaatgtaggtgtttcgtagcttagaatgaaatttaacaatgagaaagaaagaggatttcatcttcaaaaacaacagtaatgcaaacatttcgacatcgttgattcaatgatatggactgcctatttctactactttaatggaactatatgtgcacgcaatataatgtttttctactaagagatgatttatcagatctttttctgagtaaatcaatatttcttgcgtattttttttatatgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|10 : caaatgtaaatatttcctggtacagacacaattacaataatcaacaaaacccaatagaacaccataaatatttgttttgtaatttcaagtacacatgtacatgacttgtattcaatttcacagtaattttcaatgccttgtgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGC-GGTTTA--CAT---TT------TT-T-AT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTAACCGT--AATTTTTAAAATTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AAAAC-ATGTAACTT-CA-TTGTCAAG-AACT-AATAT-TTCTCT-TGTTATGTTTATAAACATTTC-----------------C-TTA-GC-TTAGAAT-AGGATTTTA--------AAATAAAA-AA--AAATGA-TTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-ATG-TGGAAT---T--ATAT-TACC-ACTTTCTATTGCCAGCT-TATGAGCA-TCAtgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|11 : tACAAATAAAAATA-TTTATTGGCACAA------TTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATATGG-CAG----AGTTTA--CTT---TTCTTTTTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTTTT---CAAAACAAGTCTTTGATACATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-CATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTGTCTGTGTTATGTT-ATAAATATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGtcagt
gi|12 : atgtatatattatatatatacatatagttttggaagtctgtcgatttctagacctaacttacagatacacgatattaaagcaaacaattttaacatttgggaatttattagattC-ACACCATT-GTT-ACA-CATATTGCAACATCTT--TGATTC-AAT---------------------TCTACC-ACTTTCTATTGCCAGCT-TATGAACACTCAATC-TAA-----TTTTACTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGAATTTCTTTTACTTGTG---TAT----A-ATTTTTAATAAA
gi|13 : T-ATT-GCA-AACATT---ACATCTT--TGATTC-AATG-A-TCTGAAAT---T--ATATCTACC-AATTTCTATTGCAAGTT-TATGTGCACTCAATC-TAA-----TAGTACTAAGAGAGGA-------TCTCTCAGATCGTTTTCTGAGTAA-ATC-AACA-TGCAT------------CTTGTG---TAT----AATTTATATATatccaaggtttttttagccaaagattattgatgattgctcctgactgcactggtcaattattctttgttttatgtttggtaaaaggtgttgaattgaatttatatattttgtaatgtttgaaaatccaagattatccagaatagaaaatattttcgtagtccaagcattgtggtcacttgtggattgataaagtttaa
gi|15 : atACACAATTAAAAT--ACTTGACAAAG--CCATTGG-ACATCATTT-G-CA-T----GTTTA--CATTTATT------TT-TTAT---GTAAT------------CGG---T--------------GATT----CACTTGGCAGAAAA-GT-TTTGA-AAATTGGACTAC--AG--TTTAAAAgtatatatatataaaactcaagggttttttaaccaaggatttgtgatgatagctcttgagtgcactggtcaattattttttgttcagttatgtttgataaaaagtgttcaattgaatttttat
gi|17 : ATTGCCATAAACACAATTAAAAT--AA-TGACAAAAGCCCA-TGG-ACA-CATTTGC-AAGTG---GTTTA--CATTA-TT------TT-TTAT---GTTAT----A-----TATGT---g
gi|18 : ctacatactgtcaTTTTAAAACTTTGTGTAT-AT-CACTGTTCAATTA-TATTTTT--AA--C-ATGTAACTTTCG-TTGTCAAA-A-CT-AATAT-TTCTCTGTGTTATGT
gi|19 : ATGTC-TTA-GC-GTAGGGC-GAGATTT-ATGTACATACAATGAAA-AAGAAAATGAATTTTATCTTCG-GTC-
gi|2 : gcagacattctttaga-T--ATGGACTTCTTTTTCTTGTG---TAT-----TTTCTTTTTTAAA
gi|20 : ACAAATACAAAAA-T--------ACAGTTACA-TCACAAT--AATTGGCAAAGGTCTATTGA-ACAGCATTataaaattcaagtttttttttataaccaaagatttttttaatggttgctccagattgcactagtctgttttatgtttggtaaaaggtgttgaattggactgatttttatattttgtaatttttgcctcggaaaatccaagattatctagaatagaaaatattttcctagttcaagtattgtagtcacttgtggataggtaaagattttaaaaacgccaaagaaccatacgttaatgatcagatgattccagtatttgaaaatacttctgagaatgaaattttggaccaaagtggcaagttctgccagacaaccagcattggatgttttacagtgcactccgaggatatctttaataaattttaagtgaaatttttctatgtttgaaacatcttaaaaatgaatgaaagtttccccatgtatttcactgcaatagtacaacagcattaaaaagtttttctataagtttacatgggttatcaataccaatatttcttttcattttaaaacatgcttttctggctttttcaataagcacagctgttgctaagttaaacctcccatttcatttcatcattcataacacccaactagcagtattttggtacaatttgtattgtattgccattaattataaaatcattcccttgaggtttgccatttgagttaaatatcaaaactctggatttacctacgttgacctgcagtttccagtttgaacaatagcctatttgctgaaaatatcaagaccgttttgtaaatcacttttgctttcagaaaagattaaaatatcatcagcatataacagtat
gi|21 : atTACAACTA-CTTAATGACCCAAACACGA----------ATTGGCAAAGGCCCATTGA-GTATCATcaaagattactgtttata
gi|22 : acaaatcaattttttttatGGCCCATTGA-ACATCATTTGG-CAG----AGTTTA--C-T---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-
gi|24 : GCACTCAATC-TAA-----TTTTACTAAGAGAGGATCTGAGTTCTCTCAGATCTTTTTCTGAGTAA-ATC-A
gi|28 : TTTTCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGA
gi|3 : AAATACAAATAATTTATTGGTACA--CGTAA----AATGGAATT----AAGGCCCATTGATACATCATTTAGACA-CAT--GTTTA--CATA--TC------TT-TTATCCGGGAAT----AG----CATGG---TACATGTAATGCTGAGACTCTTGTGTT---CAAAACA-GTCTTTAATG---TTCACCGTTAAATTTTAAAAGCTTTGTGCGT-AT-CACTGTTCAAATA-TATTTTTTAAA--CAATGT-ACTTTCATTTGCCCAA-A-CTGAATAT-CATTCTG-GTTATGTT-ATAAATGTTTCTAACGGGTTGGGCATCTC-TTAGGC-TTA-AATAAAGATTT-A--------CAATGAAACAAGAAAATGAGTTTCACATT-A-ATCAACACCAGTGATT-ACA-TAAATC-CAACATCTTTCTGATTT--------G-TGGAAT---TTAATATCTACC-ACTTTCTAT-----GTT-TATGTG-ACTCAATC-TAC-----ATTTACTAAGAGAGGA-------GCTCTCAAATCGTTT--AGGATAA-ATC-AACATT--ATGGACTTCTTCT--TTCTA---TAGCAAAATTTTTGTTA-AAA
gi|4 : ACACATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGT----GTTTAGGGAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GAT-------TT---CAAAACA-GTCTTCNNNNNNNNNNNNNNN--NNNNNNNNNNACTTTGTGTATGAT-CACTGTTCCAATATTATTTTG--AA--C-ATGCACTTTTCA-TTGTAATGAA-CT-AATAT-TTGTCTGTGTTATGTT-ATAAA--TTTCTAA-GG--T-GGCATTTCATTA-GCATTAGAAT-AGGATTT-A---------AATGAA-----------------ATCTTCACATC-ACACCAGT-ATTGGCACCATATTGCAAC--TTT--TGATTCTAAT-----------T---T--ATATCTACCAACTTTCTATTGCCAGC--TATGAGCACTCAATCATAA-----TTTTGATATGAAGGGATTGAGT-TCTCTCAGA-CTTTTTCTGAGTAATATCAAACA-T--ATGAACTTTTTTTACTTGTGGATTAT----AGATTTTTTATAAAtaaaatttcaattatttttttttttagccaaagtctttaagattgattgctcctgagtggcactggtcaacttagtgatctttgtttttatgtttggttaaagttgtgaattgaatttttatatttttgtaatgtccagaaat
gi|6 : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ACC-ACAACAGC-ATT-GCA-AATATTGCAACGTCTT--TGCTTC-AATGAA-G-TCGAAT---T--ATATCTGCC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------ACTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAAttcaaggtttttttaatccaaaaatttttgtatgatgtgctcttggtgcactggtcaattaattcttttgtttttatgtttggtaaaaaggtgttgatattggattt
gi|8 : AATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AATTTA--CAT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCAAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-
gi|9 : ATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTA--CAT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATA-TTCACTGT--AATTTTTAAGACTTTGTGTAA-ATCCACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAAC-TTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATG-AA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-A
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTTTTTTTAAACCAAAGATTTTTGATGATTGCTCCTGAGTTGCACCTGGTCAAATTATTCTTTGTTTTTATGTTGGTAAAGGTGTTGAATTGAATTTTTATATTTTGTAATGTTTGAAAATCCAAGATTATCTAGATAGAAAATATTTTCATACCAAGCACTTGTGGTCACTTGTGGATTGATAAAGTTTGTAAAAGCCAAGAACAGCGTTACGAGATATTCCATATTTGATACTCGAAATGAAATTGGACCAAAGTGGCAGTCTATTGAGTTCTGCTAGACAATCATATGGATGATTTGCAGTGCACTCCGAGGATATCTCTAATAAATTTTAAGTGAGATTTTTCTATGTTTGAAACATCTTTGGATGAGAGATCCATTCCCCATATTTCATTACAATAAAGAAGAACTGATAGTACAATAGCATCAAAAAGTTTTTCTAATAGTTTACATGGATTTTCATTTTAAAGCATGCTTTTCTGGCTTTTTCAATAAGCACAGCTGTTGCTATAAGTTCTAAATATTGCATCT
Unaligned ( gi|7 ): CTTGTGTATAATTTATATATGTATATATATATAAAACTCAAGGGTTTTTTAACCAAGGATTTGTGATGATAGCTCTTGAGTGCACTGGTCAATTATTTTTTGTTCAGTTATGTTTGATAAAAAGTGTTCAATTGAATTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTACAGTGCACTCCGAGGATATCTTTTATGAATTTTTAAAGTGAAATTTTTCTATGTTTCAAACACCTTTGGATGAGAGATCCACCCCCTCTATGTTTCTCTACAATAAGAAGAATTGAAAGTGCAATAACATAAAAAA
Unaligned ( gi|14 ): AAGAAAAAAAGCCCAAATGAAGAGACGTTAAAATATTAGAATCTAGATGGTTCCAATATTCTACTGCGAGAATGAAATTTTGAACCAAGTGCAAGTCTATTAAGTTTCTGCTAGACAGACCAGGCATTGGATGTCTTTTGCCCGTGCACTTGCCGAGGATTTTTATAAATTTTTACGTGAATTTTTTTT
Unaligned ( gi|16 ): CATGTATTGTTGTACATGTATATAACAACATCTGCAAGTTTACTGAATGGCGTACTTTCATCTCTTCTATAGATTAAAAATATTCCCATTTTTTAATAAAT
Unaligned ( gi|23 ): TATCTAGAATAGAAAATATTTTCATAGTCCAAGTAATTGCAGCATGGTGCACTTGTGGATTGGTAAAG
Unaligned ( gi|25 ): CCTCATAGTTTAAGCATTGTGGTCACTTGTGAATTGGTAAAGTTTAAAAAT
Unaligned ( gi|26 ): CATCAAAAAGTTTTTCAAAAAGTTAACGTGGATTATCAATACCAATA
Unaligned ( gi|27 ): GCTGTTGCTAAGTTAAACCTCCCATTATATTTCAT
Alignments
lowQualScore : 333333 111 111111 22222222222222 22222222 222222 11111 2222222 111 111111
lowQualScore : 4 44 3 3 444444 55 555 000000 7 666 7777777777 666 33333333333333 4 0 777 4 0 6 0 1 66 44 4 4 66 66 4 1 4 4 4 4 4 5 99 5 66 2 2 4 4 4 4 5 33333333 5 2 2 5 4 4 4 44 3 66 4 999999 777 66 4 1 4 4 11111 0 4444444 4 4 5 77 22 1 8 000 555555
lowQualScore : . .. . . ...... .. ... ...... . ... .......... ... .............. . . ... . . . . . .. .. . . .. .. . . . . . . . . .. . .. . . . . . . . ........ . . . . . . . .. . .. . ...... ... .. . . . . ..... . ....... . . . .. .. . . ... ......
lowQualScore : 0 66 1 6 222222 00 000 555555 3 444 7777777777 444 55555555555555 7 3 000 0 2 9 2 1 11 33 4 4 11 11 4 9 4 4 4 4 4 0 66 0 99 0 6 4 4 4 4 0 11111111 0 2 0 0 4 4 4 66 9 11 4 777777 888 11 4 1 4 4 11111 5 5555555 4 4 0 99 44 4 6 000 333333
consensus : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
Reference ( family-3657 ) : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
gi|1 : CAAATGTAAATA-TTTCCTGGTACAGACACAATTACAAT--AATCAACAAAACCCAATAGA-ACACCAT------AA---------A--TAT---TT------GT-TT-T---GTAATTTCAAGTACACATGTACAT--------------GACT--TGTATT---CA-----------------ATTTCACAGT--AATTTTCAATGCCTTGTGTAT-
gi|1 : AC-AC-CACTATTAAAATA-TAT--------------GT---TTTCA-TTGTCTAG-A-GT-AATATATTTTTTGTGTTATGTT-ATAAATGTTTCTAA-TG--TAGGTGTTTC-GTA-GC-TTAGAAT-GAAATTT-AA-------CAATGAGA-AAGAAAGAGGATTTCATCTTCA-AAA-ACAACAGT-AAT-GCA-AACATTTCGACATCGT--TGATTC-AATG-ATA-TGGACTGCCT--ATTTCTACT-ACTTTA-ATGG--AACTATATGTGCACGCAATA-TAATGTTTTTCTACTAAGAGATGA-------TTTATCAGATCTTTTTCTGAGTAA-ATC-AATA-T--------TTCT--------TG---CGT----ATTTTTTTTATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaacaccactattaaaatatatgttttcattgtctagagtaatatattttttgtgttatgttataaatgtttctaatgtaggtgtttcgtagcttagaatgaaatttaacaatgagaaagaaagaggatttcatcttcaaaaacaacagtaatgcaaacatttcgacatcgttgattcaatgatatggactgcctatttctactactttaatggaactatatgtgcacgcaatataatgtttttctactaagagatgatttatcagatctttttctgagtaaatcaatatttcttgcgtattttttttatatgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|10 : caaatgtaaatatttcctggtacagacacaattacaataatcaacaaaacccaatagaacaccataaatatttgttttgtaatttcaagtacacatgtacatgacttgtattcaatttcacagtaattttcaatgccttgtgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGC-GGTTTA--CAT---TT------TT-T-AT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTAACCGT--AATTTTTAAAATTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AAAAC-ATGTAACTT-CA-TTGTCAAG-AACT-AATAT-TTCTCT-TGTTATGTTTATAAACATTTC-----------------C-TTA-GC-TTAGAAT-AGGATTTTA--------AAATAAAA-AA--AAATGA-TTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-ATG-TGGAAT---T--ATAT-TACC-ACTTTCTATTGCCAGCT-TATGAGCA-TCAtgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|11 : tACAAATAAAAATA-TTTATTGGCACAA------TTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATATGG-CAG----AGTTTA--CTT---TTCTTTTTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTTTT---CAAAACAAGTCTTTGATACATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-CATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTGTCTGTGTTATGTT-ATAAATATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGtcagt
gi|12 : atgtatatattatatatatacatatagttttggaagtctgtcgatttctagacctaacttacagatacacgatattaaagcaaacaattttaacatttgggaatttattagattC-ACACCATT-GTT-ACA-CATATTGCAACATCTT--TGATTC-AAT---------------------TCTACC-ACTTTCTATTGCCAGCT-TATGAACACTCAATC-TAA-----TTTTACTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGAATTTCTTTTACTTGTG---TAT----A-ATTTTTAATAAA
gi|13 : T-ATT-GCA-AACATT---ACATCTT--TGATTC-AATG-A-TCTGAAAT---T--ATATCTACC-AATTTCTATTGCAAGTT-TATGTGCACTCAATC-TAA-----TAGTACTAAGAGAGGA-------TCTCTCAGATCGTTTTCTGAGTAA-ATC-AACA-TGCAT------------CTTGTG---TAT----AATTTATATATatccaaggtttttttagccaaagattattgatgattgctcctgactgcactggtcaattattctttgttttatgtttggtaaaaggtgttgaattgaatttatatattttgtaatgtttgaaaatccaagattatccagaatagaaaatattttcgtagtccaagcattgtggtcacttgtggattgataaagtttaa
gi|15 : atACACAATTAAAAT--ACTTGACAAAG--CCATTGG-ACATCATTT-G-CA-T----GTTTA--CATTTATT------TT-TTAT---GTAAT------------CGG---T--------------GATT----CACTTGGCAGAAAA-GT-TTTGA-AAATTGGACTAC--AG--TTTAAAAgtatatatatataaaactcaagggttttttaaccaaggatttgtgatgatagctcttgagtgcactggtcaattattttttgttcagttatgtttgataaaaagtgttcaattgaatttttat
gi|17 : ATTGCCATAAACACAATTAAAAT--AA-TGACAAAAGCCCA-TGG-ACA-CATTTGC-AAGTG---GTTTA--CATTA-TT------TT-TTAT---GTTAT----A-----TATGT---g
gi|18 : ctacatactgtcaTTTTAAAACTTTGTGTAT-AT-CACTGTTCAATTA-TATTTTT--AA--C-ATGTAACTTTCG-TTGTCAAA-A-CT-AATAT-TTCTCTGTGTTATGT
gi|19 : ATGTC-TTA-GC-GTAGGGC-GAGATTT-ATGTACATACAATGAAA-AAGAAAATGAATTTTATCTTCG-GTC-
gi|2 : gcagacattctttaga-T--ATGGACTTCTTTTTCTTGTG---TAT-----TTTCTTTTTTAAA
gi|20 : ACAAATACAAAAA-T--------ACAGTTACA-TCACAAT--AATTGGCAAAGGTCTATTGA-ACAGCATTataaaattcaagtttttttttataaccaaagatttttttaatggttgctccagattgcactagtctgttttatgtttggtaaaaggtgttgaattggactgatttttatattttgtaatttttgcctcggaaaatccaagattatctagaatagaaaatattttcctagttcaagtattgtagtcacttgtggataggtaaagattttaaaaacgccaaagaaccatacgttaatgatcagatgattccagtatttgaaaatacttctgagaatgaaattttggaccaaagtggcaagttctgccagacaaccagcattggatgttttacagtgcactccgaggatatctttaataaattttaagtgaaatttttctatgtttgaaacatcttaaaaatgaatgaaagtttccccatgtatttcactgcaatagtacaacagcattaaaaagtttttctataagtttacatgggttatcaataccaatatttcttttcattttaaaacatgcttttctggctttttcaataagcacagctgttgctaagttaaacctcccatttcatttcatcattcataacacccaactagcagtattttggtacaatttgtattgtattgccattaattataaaatcattcccttgaggtttgccatttgagttaaatatcaaaactctggatttacctacgttgacctgcagtttccagtttgaacaatagcctatttgctgaaaatatcaagaccgttttgtaaatcacttttgctttcagaaaagattaaaatatcatcagcatataacagtat
gi|21 : atTACAACTA-CTTAATGACCCAAACACGA----------ATTGGCAAAGGCCCATTGA-GTATCATcaaagattactgtttata
gi|22 : acaaatcaattttttttatGGCCCATTGA-ACATCATTTGG-CAG----AGTTTA--C-T---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-
gi|24 : GCACTCAATC-TAA-----TTTTACTAAGAGAGGATCTGAGTTCTCTCAGATCTTTTTCTGAGTAA-ATC-A
gi|28 : TTTTCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGA
gi|3 : AAATACAAATAATTTATTGGTACA--CGTAA----AATGGAATT----AAGGCCCATTGATACATCATTTAGACA-CAT--GTTTA--CATA--TC------TT-TTATCCGGGAAT----AG----CATGG---TACATGTAATGCTGAGACTCTTGTGTT---CAAAACA-GTCTTTAATG---TTCACCGTTAAATTTTAAAAGCTTTGTGCGT-AT-CACTGTTCAAATA-TATTTTTTAAA--CAATGT-ACTTTCATTTGCCCAA-A-CTGAATAT-CATTCTG-GTTATGTT-ATAAATGTTTCTAACGGGTTGGGCATCTC-TTAGGC-TTA-AATAAAGATTT-A--------CAATGAAACAAGAAAATGAGTTTCACATT-A-ATCAACACCAGTGATT-ACA-TAAATC-CAACATCTTTCTGATTT--------G-TGGAAT---TTAATATCTACC-ACTTTCTAT-----GTT-TATGTG-ACTCAATC-TAC-----ATTTACTAAGAGAGGA-------GCTCTCAAATCGTTT--AGGATAA-ATC-AACATT--ATGGACTTCTTCT--TTCTA---TAGCAAAATTTTTGTTA-AAA
gi|4 : ACACATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGT----GTTTAGGGAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GAT-------TT---CAAAACA-GTCTTCNNNNNNNNNNNNNNN--NNNNNNNNNNACTTTGTGTATGAT-CACTGTTCCAATATTATTTTG--AA--C-ATGCACTTTTCA-TTGTAATGAA-CT-AATAT-TTGTCTGTGTTATGTT-ATAAA--TTTCTAA-GG--T-GGCATTTCATTA-GCATTAGAAT-AGGATTT-A---------AATGAA-----------------ATCTTCACATC-ACACCAGT-ATTGGCACCATATTGCAAC--TTT--TGATTCTAAT-----------T---T--ATATCTACCAACTTTCTATTGCCAGC--TATGAGCACTCAATCATAA-----TTTTGATATGAAGGGATTGAGT-TCTCTCAGA-CTTTTTCTGAGTAATATCAAACA-T--ATGAACTTTTTTTACTTGTGGATTAT----AGATTTTTTATAAAtaaaatttcaattatttttttttttagccaaagtctttaagattgattgctcctgagtggcactggtcaacttagtgatctttgtttttatgtttggttaaagttgtgaattgaatttttatatttttgtaatgtccagaaat
gi|6 : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ACC-ACAACAGC-ATT-GCA-AATATTGCAACGTCTT--TGCTTC-AATGAA-G-TCGAAT---T--ATATCTGCC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------ACTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAAttcaaggtttttttaatccaaaaatttttgtatgatgtgctcttggtgcactggtcaattaattcttttgtttttatgtttggtaaaaaggtgttgatattggattt
gi|8 : AATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AATTTA--CAT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCAAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-
gi|9 : ATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTA--CAT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATA-TTCACTGT--AATTTTTAAGACTTTGTGTAA-ATCCACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAAC-TTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATG-AA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-A
blockSeqs : A GG T A GTGTTA GG TTA CTTTTT C CCG AG . ACATGTAATGCTGA T TGG A A C TA TG C T TA AA A A T A A G . T CA C GT A T A G A A T TGTACATA C A A C A G G CC G TC T GATG . TA A C . A . TCTGAGT T A T GC GA T A GAT CAAAAT
blockSeqs : . . . . GTGTTA . TA . C . AG . . T . . C C . C . . . . . A . . . . . . TA . . G G . . . . . . . A G . . . . C G . . GATC . . . C . . . TTGAGT . . . . GG T T . AA
blockSeqs : . . . . GTGCG . A . . . AG . . T . . A T . T . . . . . A . . . . . . TG . . A C . . . . . . . G A . . . . C G . . GAAG . . . A . . . . . . . . GG T A . AG
blockSeqs : . . . . GTGTA . . . . . AG . . C . . N C . T . . . . . A . . . . . . CA . . A T . . . . . . . G A . . . . A G . . GAAG . . . C . . . . . . . . GA T A . AT
blockSeqs : . . . . GTG . . . . . AG . . T . . A N . T . . . . . A . . . . . . CA . . A T . . . . . . . G A . . . . T G . . GAAG . . . C . . . . . . . . GG T . . A
blockSeqs : . . . . CAT . . . . . AG . . T . . T T . T . . . . . A . . . . . . C . . . G . . . . . . . . . . . . . A G . . G . . . A . . . . . . . . . . . . T
blockSeqs : . . . . GA . . . . . AG . . T . . T T . A . . . . . A . . . . . . . . . . G . . . . . . . . . . . . . C . . . . . . . C . . . . . . .
blockSeqs : . . . . GA . . . . . AG . . . . . . T . A . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . .
blockSeqs : . . . . GT . . . . . A . . . . . A .
blockSeqs : . . . T . . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : GTGTA* AG******** *** ******** *** ***** GG
originalCons : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
finalCons : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTA-GTTTA--CAT---TT------TT-TTAT---GTAATAG--------CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTTTTTTTAAACCAAAGATTTTTGATGATTGCTCCTGAGTTGCACCTGGTCAAATTATTCTTTGTTTTTATGTTGGTAAAGGTGTTGAATTGAATTTTTATATTTTGTAATGTTTGAAAATCCAAGATTATCTAGATAGAAAATATTTTCATACCAAGCACTTGTGGTCACTTGTGGATTGATAAAGTTTGTAAAAGCCAAGAACAGCGTTACGAGATATTCCATATTTGATACTCGAAATGAAATTGGACCAAAGTGGCAGTCTATTGAGTTCTGCTAGACAATCATATGGATGATTTGCAGTGCACTCCGAGGATATCTCTAATAAATTTTAAGTGAGATTTTTCTATGTTTGAAACATCTTTGGATGAGAGATCCATTCCCCATATTTCATTACAATAAAGAAGAACTGATAGTACAATAGCATCAAAAAGTTTTTCTAATAGTTTACATGGATTTTCATTTTAAAGCATGCTTTTCTGGCTTTTTCAATAAGCACAGCTGTTGCTATAAGTTCTAAATATTGCATCT
Unaligned ( gi|7 ): CTTGTGTATAATTTATATATGTATATATATATAAAACTCAAGGGTTTTTTAACCAAGGATTTGTGATGATAGCTCTTGAGTGCACTGGTCAATTATTTTTTGTTCAGTTATGTTTGATAAAAAGTGTTCAATTGAATTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTACAGTGCACTCCGAGGATATCTTTTATGAATTTTTAAAGTGAAATTTTTCTATGTTTCAAACACCTTTGGATGAGAGATCCACCCCCTCTATGTTTCTCTACAATAAGAAGAATTGAAAGTGCAATAACATAAAAAA
Unaligned ( gi|14 ): AAGAAAAAAAGCCCAAATGAAGAGACGTTAAAATATTAGAATCTAGATGGTTCCAATATTCTACTGCGAGAATGAAATTTTGAACCAAGTGCAAGTCTATTAAGTTTCTGCTAGACAGACCAGGCATTGGATGTCTTTTGCCCGTGCACTTGCCGAGGATTTTTATAAATTTTTACGTGAATTTTTTTT
Unaligned ( gi|16 ): CATGTATTGTTGTACATGTATATAACAACATCTGCAAGTTTACTGAATGGCGTACTTTCATCTCTTCTATAGATTAAAAATATTCCCATTTTTTAATAAAT
Unaligned ( gi|23 ): TATCTAGAATAGAAAATATTTTCATAGTCCAAGTAATTGCAGCATGGTGCACTTGTGGATTGGTAAAG
Unaligned ( gi|25 ): CCTCATAGTTTAAGCATTGTGGTCACTTGTGAATTGGTAAAGTTTAAAAAT
Unaligned ( gi|26 ): CATCAAAAAGTTTTTCAAAAAGTTAACGTGGATTATCAATACCAATA
Unaligned ( gi|27 ): GCTGTTGCTAAGTTAAACCTCCCATTATATTTCAT
Alignments
lowQualScore : 333333 111 111111 22222222222222 22222222 222222 11111 2222222 111 111111
lowQualScore : 4 44 3 3 444444 55 555 000000 7 666 7777777777 666 33333333333333 4 0 777 4 0 6 0 1 66 44 4 4 66 66 4 1 4 4 4 4 4 5 99 5 66 2 2 4 4 4 4 5 33333333 5 2 2 5 4 4 4 44 3 66 4 999999 777 66 4 1 4 4 11111 0 4444444 4 4 5 77 22 1 8 000 555555
lowQualScore : . .. . . ...... .. ... ...... . ... .......... ... .............. . . ... . . . . . .. .. . . .. .. . . . . . . . . .. . .. . . . . . . . ........ . . . . . . . .. . .. . ...... ... .. . . . . ..... . ....... . . . .. .. . . ... ......
lowQualScore : 0 66 1 6 222222 00 000 555555 3 444 7777777777 444 55555555555555 7 3 000 0 2 9 2 1 11 33 4 4 11 11 4 9 4 4 4 4 4 0 66 0 99 0 6 4 4 4 4 0 11111111 0 2 0 0 4 4 4 66 9 11 4 777777 888 11 4 1 4 4 11111 5 5555555 4 4 0 99 44 4 6 000 333333
consensus : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
Reference ( family-3657 ) : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AGTTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATANATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACGTTTCTAA-GG--TAGGCATNTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-A-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAGCT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAA
gi|1 : CAAATGTAAATA-TTTCCTGGTACAGACACAATTACAAT--AATCAACAAAACCCAATAGA-ACACCAT------AA---------A--TAT---TT------GT-TT-T---GTAATTTCAAGTACACATGTACAT--------------GACT--TGTATT---CA-----------------ATTTCACAGT--AATTTTCAATGCCTTGTGTAT-
gi|1 : AC-AC-CACTATTAAAATA-TAT--------------GT---TTTCA-TTGTCTAG-A-GT-AATATATTTTTTGTGTTATGTT-ATAAATGTTTCTAA-TG--TAGGTGTTTC-GTA-GC-TTAGAAT-GAAATTT-AA-------CAATGAGA-AAGAAAGAGGATTTCATCTTCA-AAA-ACAACAGT-AAT-GCA-AACATTTCGACATCGT--TGATTC-AATG-ATA-TGGACTGCCT--ATTTCTACT-ACTTTA-ATGG--AACTATATGTGCACGCAATA-TAATGTTTTTCTACTAAGAGATGA-------TTTATCAGATCTTTTTCTGAGTAA-ATC-AATA-T--------TTCT--------TG---CGT----ATTTTTTTTATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaacaccactattaaaatatatgttttcattgtctagagtaatatattttttgtgttatgttataaatgtttctaatgtaggtgtttcgtagcttagaatgaaatttaacaatgagaaagaaagaggatttcatcttcaaaaacaacagtaatgcaaacatttcgacatcgttgattcaatgatatggactgcctatttctactactttaatggaactatatgtgcacgcaatataatgtttttctactaagagatgatttatcagatctttttctgagtaaatcaatatttcttgcgtattttttttatatgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|10 : caaatgtaaatatttcctggtacagacacaattacaataatcaacaaaacccaatagaacaccataaatatttgttttgtaatttcaagtacacatgtacatgacttgtattcaatttcacagtaattttcaatgccttgtgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaggcgagagttcttcttttttaACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGC-GGTTTA--CAT---TT------TT-T-AT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTAACCGT--AATTTTTAAAATTTTGTGTAT-AT-CACTGTTCAAATA-TATTTTT--AAAAC-ATGTAACTT-CA-TTGTCAAG-AACT-AATAT-TTCTCT-TGTTATGTTTATAAACATTTC-----------------C-TTA-GC-TTAGAAT-AGGATTTTA--------AAATAAAA-AA--AAATGA-TTTCATCTTCA-ATC-ACACCAGT-ATT-GCA-CATATTGCAACATCTT--TGATTC-AATG-ATG-TGGAAT---T--ATAT-TACC-ACTTTCTATTGCCAGCT-TATGAGCA-TCAtgcaactccattttttaaaaaccaaatactgttgatgattgcttctgagtacactggtcaattagtctttgttttacgtttggtaaaagttgttgaattgaatcttcatattttgtaatgtttgaaaatctcagattaatattttactattccaattattgtaatcacttgtgaattggtttaagtaagcagacattatcagatgattcagtacttgagaatgacatatggagaaatcgtgtacactttattcnnnnnnnnnnnnnnnnnnnnnnncaattctgcgagacagccagcattgattgattaccagtgcacgccgaggatatctttaatgaattttacgtgaattatttccatatttgaaa
gi|11 : tACAAATAAAAATA-TTTATTGGCACAA------TTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATATGG-CAG----AGTTTA--CTT---TTCTTTTTTT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTGTTTT---CAAAACAAGTCTTTGATACATTTCACCGT--AATTTTTAAAACTTTGTGTAT-AT-CACTGTTCAAATA-CATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTGTCTGTGTTATGTT-ATAAATATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGtcagt
gi|12 : atgtatatattatatatatacatatagttttggaagtctgtcgatttctagacctaacttacagatacacgatattaaagcaaacaattttaacatttgggaatttattagattC-ACACCATT-GTT-ACA-CATATTGCAACATCTT--TGATTC-AAT---------------------TCTACC-ACTTTCTATTGCCAGCT-TATGAACACTCAATC-TAA-----TTTTACTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGAGTAA-ATC-AACA-T--ATGAATTTCTTTTACTTGTG---TAT----A-ATTTTTAATAAA
gi|13 : T-ATT-GCA-AACATT---ACATCTT--TGATTC-AATG-A-TCTGAAAT---T--ATATCTACC-AATTTCTATTGCAAGTT-TATGTGCACTCAATC-TAA-----TAGTACTAAGAGAGGA-------TCTCTCAGATCGTTTTCTGAGTAA-ATC-AACA-TGCAT------------CTTGTG---TAT----AATTTATATATatccaaggtttttttagccaaagattattgatgattgctcctgactgcactggtcaattattctttgttttatgtttggtaaaaggtgttgaattgaatttatatattttgtaatgtttgaaaatccaagattatccagaatagaaaatattttcgtagtccaagcattgtggtcacttgtggattgataaagtttaa
gi|15 : atACACAATTAAAAT--ACTTGACAAAG--CCATTGG-ACATCATTT-G-CA-T----GTTTA--CATTTATT------TT-TTAT---GTAAT------------CGG---T--------------GATT----CACTTGGCAGAAAA-GT-TTTGA-AAATTGGACTAC--AG--TTTAAAAgtatatatatataaaactcaagggttttttaaccaaggatttgtgatgatagctcttgagtgcactggtcaattattttttgttcagttatgtttgataaaaagtgttcaattgaatttttat
gi|17 : ATTGCCATAAACACAATTAAAAT--AA-TGACAAAAGCCCA-TGG-ACA-CATTTGC-AAGTG---GTTTA--CATTA-TT------TT-TTAT---GTTAT----A-----TATGT---g
gi|18 : ctacatactgtcaTTTTAAAACTTTGTGTAT-AT-CACTGTTCAATTA-TATTTTT--AA--C-ATGTAACTTTCG-TTGTCAAA-A-CT-AATAT-TTCTCTGTGTTATGT
gi|19 : ATGTC-TTA-GC-GTAGGGC-GAGATTT-ATGTACATACAATGAAA-AAGAAAATGAATTTTATCTTCG-GTC-
gi|2 : gcagacattctttaga-T--ATGGACTTCTTTTTCTTGTG---TAT-----TTTCTTTTTTAAA
gi|20 : ACAAATACAAAAA-T--------ACAGTTACA-TCACAAT--AATTGGCAAAGGTCTATTGA-ACAGCATTataaaattcaagtttttttttataaccaaagatttttttaatggttgctccagattgcactagtctgttttatgtttggtaaaaggtgttgaattggactgatttttatattttgtaatttttgcctcggaaaatccaagattatctagaatagaaaatattttcctagttcaagtattgtagtcacttgtggataggtaaagattttaaaaacgccaaagaaccatacgttaatgatcagatgattccagtatttgaaaatacttctgagaatgaaattttggaccaaagtggcaagttctgccagacaaccagcattggatgttttacagtgcactccgaggatatctttaataaattttaagtgaaatttttctatgtttgaaacatcttaaaaatgaatgaaagtttccccatgtatttcactgcaatagtacaacagcattaaaaagtttttctataagtttacatgggttatcaataccaatatttcttttcattttaaaacatgcttttctggctttttcaataagcacagctgttgctaagttaaacctcccatttcatttcatcattcataacacccaactagcagtattttggtacaatttgtattgtattgccattaattataaaatcattcccttgaggtttgccatttgagttaaatatcaaaactctggatttacctacgttgacctgcagtttccagtttgaacaatagcctatttgctgaaaatatcaagaccgttttgtaaatcacttttgctttcagaaaagattaaaatatcatcagcatataacagtat
gi|21 : atTACAACTA-CTTAATGACCCAAACACGA----------ATTGGCAAAGGCCCATTGA-GTATCATcaaagattactgtttata
gi|22 : acaaatcaattttttttatGGCCCATTGA-ACATCATTTGG-CAG----AGTTTA--C-T---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-
gi|24 : GCACTCAATC-TAA-----TTTTACTAAGAGAGGATCTGAGTTCTCTCAGATCTTTTTCTGAGTAA-ATC-A
gi|28 : TTTTCTAAGAGAGGA-------TCTCTCAGATCTTTTTCTGA
gi|3 : AAATACAAATAATTTATTGGTACA--CGTAA----AATGGAATT----AAGGCCCATTGATACATCATTTAGACA-CAT--GTTTA--CATA--TC------TT-TTATCCGGGAAT----AG----CATGG---TACATGTAATGCTGAGACTCTTGTGTT---CAAAACA-GTCTTTAATG---TTCACCGTTAAATTTTAAAAGCTTTGTGCGT-AT-CACTGTTCAAATA-TATTTTTTAAA--CAATGT-ACTTTCATTTGCCCAA-A-CTGAATAT-CATTCTG-GTTATGTT-ATAAATGTTTCTAACGGGTTGGGCATCTC-TTAGGC-TTA-AATAAAGATTT-A--------CAATGAAACAAGAAAATGAGTTTCACATT-A-ATCAACACCAGTGATT-ACA-TAAATC-CAACATCTTTCTGATTT--------G-TGGAAT---TTAATATCTACC-ACTTTCTAT-----GTT-TATGTG-ACTCAATC-TAC-----ATTTACTAAGAGAGGA-------GCTCTCAAATCGTTT--AGGATAA-ATC-AACATT--ATGGACTTCTTCT--TTCTA---TAGCAAAATTTTTGTTA-AAA
gi|4 : ACACATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGT----GTTTAGGGAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GAT-------TT---CAAAACA-GTCTTCNNNNNNNNNNNNNNN--NNNNNNNNNNACTTTGTGTATGAT-CACTGTTCCAATATTATTTTG--AA--C-ATGCACTTTTCA-TTGTAATGAA-CT-AATAT-TTGTCTGTGTTATGTT-ATAAA--TTTCTAA-GG--T-GGCATTTCATTA-GCATTAGAAT-AGGATTT-A---------AATGAA-----------------ATCTTCACATC-ACACCAGT-ATTGGCACCATATTGCAAC--TTT--TGATTCTAAT-----------T---T--ATATCTACCAACTTTCTATTGCCAGC--TATGAGCACTCAATCATAA-----TTTTGATATGAAGGGATTGAGT-TCTCTCAGA-CTTTTTCTGAGTAATATCAAACA-T--ATGAACTTTTTTTACTTGTGGATTAT----AGATTTTTTATAAAtaaaatttcaattatttttttttttagccaaagtctttaagattgattgctcctgagtggcactggtcaacttagtgatctttgtttttatgtttggttaaagttgtgaattgaatttttatatttttgtaatgtccagaaat
gi|6 : ACAAATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTA--CAT---TT------TT-TTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATAAATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATTTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-ACC-ACAACAGC-ATT-GCA-AATATTGCAACGTCTT--TGCTTC-AATGAA-G-TCGAAT---T--ATATCTGCC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------ACTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-T--ATGGACTTCTTTTACTTGTG---TAT----ATTTTTTTTATAAAttcaaggtttttttaatccaaaaatttttgtatgatgtgctcttggtgcactggtcaattaattcttttgtttttatgtttggtaaaaaggtgttgatattggattt
gi|8 : AATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGT-AATTTA--CAT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATATTTCACTGT--AATTTTTAAGACTTTGTGTAA-AT-CACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAACATTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATGAAA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCAAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-AACA-
gi|9 : ATACAAATA-TTTATTGGCACAAACACAATTACAAT--AATTGGCAAAGGCCCATTGA-ACATCATTTGG-CAGTGTTAATTTA--CAT---TT------TTCTTAT---GTAAT----AG----CATGT---T--------------GATTTCTATATT---CAAAACA-GTCTTTGATATA-TTCACTGT--AATTTTTAAGACTTTGTGTAA-ATCCACTGTTCAAATA-TATTTTT--AA--C-ATGTAACTTTCA-TTGTCAAG-A-CT-AATAT-TTCTCTGTGTTATGTT-ATAAAC-TTTCTAA-GG--TAGGCATGTC-TTA-GC-TTAGAAT-AGGATTT-A--------CAATG-AA-AAGGAAATGAATTTCATCTTCA-GTC-ACACCAGT-ATT-GCA-CATTTTGCAACATCTT--TGATTC-AATGAA-G-TGGAAT---T--ATATCTACC-ACTTTCTATTGCCAACT-TATGAGCACTCAATC-TAA-----TTTTGCTAAGAGAGGA-------TCTCTCAGATTTTTTTCTGAGTAA-ATC-A
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): GTTTTTTTTTAAACCAAAGATTTTTGATGATTGCTCCTGAGTTGCACCTGGTCAAATTATTCTTTGTTTTTATGTTGGTAAAGGTGTTGAATTGAATTTTTATATTTTGTAATGTTTGAAAATCCAAGATTATCTAGATAGAAAATATTTTCATACCAAGCACTTGTGGTCACTTGTGGATTGATAAAGTTTGTAAAAGCCAAGAACAGCGTTACGAGATATTCCATATTTGATACTCGAAATGAAATTGGACCAAAGTGGCAGTCTATTGAGTTCTGCTAGACAATCATATGGATGATTTGCAGTGCACTCCGAGGATATCTCTAATAAATTTTAAGTGAGATTTTTCTATGTTTGAAACATCTTTGGATGAGAGATCCATTCCCCATATTTCATTACAATAAAGAAGAACTGATAGTACAATAGCATCAAAAAGTTTTTCTAATAGTTTACATGGATTTTCATTTTAAAGCATGCTTTTCTGGCTTTTTCAATAAGCACAGCTGTTGCTATAAGTTCTAAATATTGCATCT
Unaligned ( gi|7 ): CTTGTGTATAATTTATATATGTATATATATATAAAACTCAAGGGTTTTTTAACCAAGGATTTGTGATGATAGCTCTTGAGTGCACTGGTCAATTATTTTTTGTTCAGTTATGTTTGATAAAAAGTGTTCAATTGAATTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTTACAGTGCACTCCGAGGATATCTTTTATGAATTTTTAAAGTGAAATTTTTCTATGTTTCAAACACCTTTGGATGAGAGATCCACCCCCTCTATGTTTCTCTACAATAAGAAGAATTGAAAGTGCAATAACATAAAAAA
Unaligned ( gi|14 ): AAGAAAAAAAGCCCAAATGAAGAGACGTTAAAATATTAGAATCTAGATGGTTCCAATATTCTACTGCGAGAATGAAATTTTGAACCAAGTGCAAGTCTATTAAGTTTCTGCTAGACAGACCAGGCATTGGATGTCTTTTGCCCGTGCACTTGCCGAGGATTTTTATAAATTTTTACGTGAATTTTTTTT
Unaligned ( gi|16 ): CATGTATTGTTGTACATGTATATAACAACATCTGCAAGTTTACTGAATGGCGTACTTTCATCTCTTCTATAGATTAAAAATATTCCCATTTTTTAATAAAT
Unaligned ( gi|23 ): TATCTAGAATAGAAAATATTTTCATAGTCCAAGTAATTGCAGCATGGTGCACTTGTGGATTGGTAAAG
Unaligned ( gi|25 ): CCTCATAGTTTAAGCATTGTGGTCACTTGTGAATTGGTAAAGTTTAAAAAT
Unaligned ( gi|26 ): CATCAAAAAGTTTTTCAAAAAGTTAACGTGGATTATCAATACCAATA
Unaligned ( gi|27 ): GCTGTTGCTAAGTTAAACCTCCCATTATATTTCAT