lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 5555555555 1111 1 1 444444444444 1 11 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 999999999999999999999999999999999999999 22222 22222 111 111 6666666666666666 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222 111 111 777777777777777777777777 11 11 3333333333333333333333 555555555555555555555555555555555555555555555555555 22222222222222222222 11111111 2222222 44444444444444444444444444444444444444444444444444444444444 1 22222222 11 111111 3333333333 11 1 11111111 33333333333333 3333333 22222222222222222 1 1 22 1
lowQualScore : 777 0 7777777777 3333 0 0 2 000000000000 0 22 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 000000000000000000000000000000000000000 11 8 99999 8 00000 999 444 3 8 6 8 8888888888888888 6 5 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555555555 000 777777 000 444444444444444444444444 5 11 5 11 3333333333333333333333 4 4 4 4 5 2 555555555555555555555555555555555555555555555555555 9999 3 3 3 3 3 3 3 22222222222222222222 66666666 3 33 9999999 55 4 4 8888 4 4 88888888888888888888888888888888888888888888888888888888888 66 66 5 5 55 666 3 77777777 00 777777 5555555555 2 44 99 99 6 0 6 6 88 6 4 6 6 99 99 33333333 2 88888888888888 4 4 5555555 3 4 44 66666666666666666 8 66 66 5 5 5 0 66 0 5 11 0 5 5 1
lowQualScore : ... . .......... .... . . . ............ . .. . ........................................................................................................................... ....................................... .. . ..... . ..... ... ... . . . . ................ . . . ......................................................................................................... ......... ... ...... ... ........................ . .. . .. ...................... . . . . . . ................................................... .... . . . . . . . .................... ........ . .. ....... .. . . .... . . ........................................................... .. .. . . .. ... . ........ .. ...... .......... . .. .. .. . . . . .. . . . . .. .. ........ . .............. . . ....... . . .. ................. . .. .. . . . . .. . . .. . . . .
lowQualScore : 555 0 2222222222 2222 0 0 5 000000000000 0 55 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888888888888888888888888888888888888888 66 0 44444 0 00000 888 000 8 0 6 0 0000000000000000 7 0 8 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999999999 000 000000 000 777777777777777777777777 7 00 0 99 7777777777777777777777 4 4 4 4 0 5 111111111111111111111111111111111111111111111111111 4444 6 6 6 6 6 6 6 33333333333333333333 99999999 6 55 3333333 00 0 0 5555 0 4 88888888888888888888888888888888888888888888888888888888888 44 99 7 0 11 111 3 88888888 22 777777 0000000000 5 55 22 22 7 5 7 7 88 7 0 7 7 00 22 22222222 5 88888888888888 4 0 2222222 0 0 99 44444444444444444 9 11 11 1 0 0 0 99 0 0 99 0 0 7 1
consensus : GCCT---ACT-GCA--------CGACGG-T-GTATTAAT-GGGGG-GGGGG------NGT-A-TA-CAC-TATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-TA-GAN--A-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA--ATCG-CAAAAAT------------CGGACATGCAAAAGG-G---AGGGGGGGGGGGGGTG--T--AAAGA-AAAATATTC-CAC------G--ACGATCAAATGT-A-AA--TG-CAC-----AAGATA-A-CCCAGCAA---AAACTCAAAT-AAATT-AAAAA-A----T--------GTG-AAACATACTTCAAA----TCC-------AA----------------------G--GAG--GCT----G-TC-TTAAT---A-AG-C-CAGGG-----TATACA-A-TAAGNCA-CC-GAAGA---A----GGGGGGGGGGGGG---GGGGTAG-CC---GA-----------------CTT----T-G-NC-ATTT--CAAAA-GAAA--T----AAAAA-TACTT-C-GTCAA-T-AAA-ATCGGGAG--ACTGTTTAT-T--ACTT-CTCC-------GTGT----------AAT-GGAT----TACTTCAGT-GG-GA-TAA-TCTT-TG-AGGTCTAAT-TTA-A------C-----TGT----AAT-C-GATAGGAAAA----CATCG--CAAG-T-GAAA----G-TAG-CGAGCAGAGCAAA-T------GCGCT---T-A----GCTAGGC--CTA----TN-A------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--A-CATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTTAC-GA-CTGN-TAT-ANT-TTT-TTTAAACTTACGTGCNTAAAC-TAACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATT-T-T--CGTCGTCGTT-CGCTGTTTACACATTGAT--GA---A--TAA-CC-GGAT--GT--AAGATT-T-TTT-CC--C-T-ATGACCT-TTT-GACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( gi|2 ) : GCCT---ACT-G-A--------CGATGA-T-GTATTAAT-GGGGG-GGGGG------TGT-A-TA-CAC-TATGCAAACAGTACTTA-AAT--AGTT--CAA-CTATA-GAC--A-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCAATATCGACAAAAAT------------CGGACATGCAAAAGGAG---AGGGGGGGGGGGGGTGTGT--GAAGA-AAAATACTC-CAC------G--ACG-TCAAATGT-A-TA--TG-CAC-----AAGATA-A-CCCAGCAA---AAACTCAAAT-AATTT-AAAA-------T--------GTG-AAAGATACTCCAA-----TCC-------AA----------------------G--GGG--GCT----G-TC-T-AAT---A-AA-C-CAGGG-----TATACA-A-TAAGTCA-C--GAAGA---A----GGGGGGGGGGGGG---GGGGCAG-CC---GA-----------------CTT----T-G-GC-ATTT--CAAAA-GAAA--T----AGAAA-TACTT-C-GTCAA-T-AAA-ATCGGGAG--ACTGTTTAT-T--ACTT-CTCC-------ATGT----------AA--GGAT----TACTTCAGT-GG-GA-TAA-TCTT-TG-AGGTCTAAT-TTA-A------C-----TGT----AAT-C-GATAGGAAAA----CA-CG--CAAG-T-GAAA----G-TAG-CGA-CAGAGCAAA-T------ACACT---T-A----GCTAGGCTACTA----TA-A------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--A-CATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTCAC-AA-CTGA-TAT-ATT-TTT-TTTAAACTTACGTGCGTAAAC-TAACAAAC-TTA-------TG-TGATAGAAATTGT-TGATT-T-T--TGTCGTTGTT-CGCTGTTTACACATTGGT--GA---A--TAA-CC-GGAT--GT--AAGATT-T-TTT-CC--C-T-ATGACC--TTT-GACCTCG-CATG-ACGTCTAAGTGTGCAAAGCAT
gi|17 : GCCTCTGACT-GCA--------CGACAG-T-GTATTAATGGGGGG-GGGGG------GGT-A-TATCAC-TATGCATA-AGTTCGCA-CAC--AGT-----A-CT-TA-GAG--ATGAT---TAT-GA---TAATCA-TAT--T-AT-CT-A--ATCA
gi|10 : gCCT---ACT-G-AGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGG------GGT-AATC-CA--TATGCCAACAGT-------------TT--CAA-CT-TA-GAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACTAA---TCA-TATGGGCAA----------------------TGCAAAAG-------GGAGGGGGGGGGGTGAGTTAAAAGAGAAAATATTCACGC------GAAACACTCAAATGTAA-AA--TG-CCA-----AAGATA-G-CAAAACAATACAGA--TAAGT-AAATT-AAAAACAATGGT--------GTG-AAtt
gi|4 : tgaagcctCT---ACTCGCA--------CGGCGGCT-GTATTAAT-GGGGG-GG---------TAT---TA-CAC-TATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-TA-GA-----GAT---TC---A---TA--TC-TAT-------CTAAGCATTAAAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGCAGGTGGGGGAGGGGT---T--AAA---AAAAT-TTC-AAT------GGGACGATCAAGTAA-AATG--TG-CACTTGTTAAGATT---CCCAGCAA---AAACTCAAAT-AAATA-AAAAAAA----T--------GTG-AAC-ATACTTCAA-----TCC-------AACCTCAAGATCCAAATTAAGGGAG--GGG--GCT----GGTC-TTAAC---A-AC-T-CGGGGGTATCTATACA-A-CCA-TTA-C---AAGACACA----GAAGAAAGGGGGG---GGGGTAA-CC---GATAAATTCCATGA-----CTT----T-G-ACCATTTT-CAA--------------------T-TTT-C-GTCAAAT-AAA-ATCGGGA---ACTGTTTAT-TTTACTT-TTCC-------GTGT----------AAT-GGAT----TACCTTCGT-GG-----AA-TCTT-TT-GGGTCTAAT-T-A-A------C-----TGTCTGTAAT-C-GAT-GGAAAA-----A-CG--CAAG-T-GAAA----G-TAcatata
gi|1 : tT---ACT-GCA--------CGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGA-TA-TACCTATGCAAACAGTAATTATAATGTAGTT--CAAACTTTAAGAC--A-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA---TC-------AT------------CG--CATGCAAAAGGAG---AAAGGGGGGGGGGG-GT-----AAG--AAAATATTC---C------G--ACGATC-AATGT-A--A--TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAATAAATTTAAAAA-------T--------GTGAAAAGATACTCCAA-----TCC-------AA----------------------GTTGTG--GCT----G-TCTT-AAT---ACAACC-CAGGG-----TATACATA-TAAGTCACC--GAAGA---AGCGGGGGGGGGGGGGGG---GGGGCAGCCC---GA-----------------CTT----TGG-GC-ATTTTACAAAA-AGAATTT----AAAAA-TACTT-CGGTCAA-C-TAA-AT-GGGAGGAACTG-TTAT-T--ACTT--TCC-------ATGT----------AAT-GGAT----GTCTTCAGTGGG-GA-TAA-TCTT-TG-AGGTTTAATCTTATA------C-----TGT----AAT-C-GATAGGGAAA----CATCG--C-AG-TGGAAA----G-TAG-CGA-GCGAGC-AA-T------ACACT---TAA----GCTAGGC--------------------------------CGCT-GGCTCAAAACT--AGTAAA-TGATATAGTGA--A--A-CATA-TCTATCTGCAACT----CTTT---------AGTGGTAG-TT--TGATG--TGT-ATTTTTCAC-AA-CTGGCTAT-ATT-TTTATTTAAACTTACGTGCGTAAAC-TAACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATT-T-TC-TGTCGTCGAT-CGCTGTTTA-AC--------------------CC-GGAT--GT--AAGATT-T-TTTCCC--C-T-ATGACCT-TTT-GACCTCG-CATG-ACGTCTAAGTGTGCAAAGCAtaacgtccgagtgtgcaag
gi|6 : AAAAT--------------GACATGCAA-----G---CGGGGGGGGGGGAGT---T--AAGGA-AAAAT--TC-CACCGAGTCG--ACGATCAAATGT-A-AAATCGACAC-----AAGATATA-TCCAGCAA---AAACTCAGAT-AATTT-AAAA-------TTAAAAATTGTG-AAACACACTTCAAA----TGC-------CA----------------------G--TAACCGCG----A-TCAT-AATT--A-AG-G-GAGGG-----GG-----G-TAAGACA-CC-GAAGG---G----AAAGCGACGGGGA---GGGGTAA-AC---GA-----------------AATCCAAT-G-AC-ATTT--------GCAA--TTTCTAG------TTT-C-GTCAA-T-AAA-ATCGGGGG--A-TGT---------------CC-------GTGT----------AT--GGAT----TACTTCAGT-GG-GAGTAA-T-TT-TG-AGGTC-AAT-TTA-A------CCTGTCTGT----AAT-CAGTTAGGAAAAGACATA-CGTTCAAGGT-GCAA----GATAGGCGAGCAGA-CAAAGT------GTGAT---T-ATATCGC-ATGC-ACTA----TA-AATTTACCAACCTATCTT--CGCT-GGCTC-AAAGTAGGGTAAA-T-ATA
gi|3 : tGACA-GCAAAGGG-------GGGGGGGGGGGGT---T--AACGC-AAA-TATTC-CAC------G--ACAATCA--TGT-A-AA--TA-CAC-----AAGATA-A-CCCAGCAA---A--CTCAGAT-AAATT-AAAAA------T--------GGA-AAATATACTTCAAAATCATCCTAATTTGAG----------------------G--GAG--GGG----G-TC-TTAATGCCA-AG-CTCAGGG-----TA-ACA-A-CAAATC-----GAAGA-----------TAAGGGGGGG---GGGTTAA-CT---GA------------------------T-G-CC-ATTT--CAAAAAGAAA--T----AAAAA-TTCCTGC-GTCAA-T-AGACATCGGG-G--ACTGTT-AT-T--ACTT-TCTC-------GTTT----------AAATGGAT----TACTTCAGT-GG-GA-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTC-----TGT-----AT-C-GATAGGAAAA----CACCG--CAAG-T-GAAATTTTG-TAG-CGAGCAGAAAACA-TTGTTAGACATG---T-AT---GCCTGAC--CTA----TCTA------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATATTG---AAGA-CATA-TCTATCTGCAACT----A-TTA--------AGTGGT-GATT--TGATG--TGCAATCTTTAACAAA-CTGA-TATAAAT-TTG-CTTAAACTTA---GCG-------AACA----TTA-------TG-TGATAG-AGTTGTGTGATT-T-TGCTGTCGTCGTT-CGCTGTTTACATATTGATCCAAATCA--TAC-CC-GGAT--GT---AGATT-T-TTC-CC--C-TAATGACCT-TTT-GACCTCG-CATGAACGTCCGAGTGTGCAa
gi|9 : -AAACATACTTCAA-----TCC-------AA----------------------A--C-----CTCAAGA-TC----AT---A-AA-T-TAAGG-----GAGGGG-GCTAAGACA-CC-GAAGA---A----AGGGGGAGGGGTAACCGATAAAT-CCAATGA-----------------CTT----T-G-CA-ATTT--CAG--------------------T-TTT-C-GTCAA-T-AAA-ATCGGG-G--ATT-----------------CC-------GTGT----------AAT-GGAT----TACTTCAGT-GG-GA-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--C-----TGT----AAT-C-GATAGGAAAA----CATCG--CAAG-T-GAAA----G-TAG-CGAGCAGA-CAAA-T------GTGTTATAT-A----GC-ATGCACCTAAAATTT-A------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATAT
gi|5 : -A-TAAGACA-CCGAAAGA---A----AGGGGGGCGGGGG---GG--CAG-CC---GA-----------------CTT----T-GCGC-CATT--CAAAA-GAAA--T----AAAAAATACTT-T-GTCTA-TGAAA-ATAGGGAGT-ACGATTGATGT--ACTTTCTTC-------ATGT----------AATGGAAC----TACTTCAG--GG-AA-TAA-TCTT-TGGAGGTCTA---TTA-A------C-----TGT----A---C-AGT--------------CG--CAAA-G-AGAA----G-TAG-CGAGCAGA-CAAA-T------GTTCT---T-A----GCTAGGCT-CTA----TA--------CAACCTA-CTT--CGCT-GCCTC-A--CTA-AGTAAAGT-ATATA-TG---A--AACATAGTCTATCTGCAACT----C-TT---------AGTG-TA-CTT--TGATG---GT-ATTTTTTAC-AATCTGA-TAT-ATT-TTT-TT-AAACTTACGTGCTTAAAG-AAACAAAC---A-------TGCTGATAAAAATTGT-CGATT-C-T---GTCGTCGTT-CCGTGTTTACACATTG----GA---AGCTAACCC-GGAT--G---AAGATTGT-TTT-CC--CTT-ATGACC--TTT-GACCTCGCCATG-ACGTCTAAGTGTGCAAA
gi|19 : ----GGGGGGGGGGGGG---GGGGT-G-CC---GATATCATAAATCCAATGACTT----T-G-TC-ATTT--CAAAA-GAAA--TA---AAAAA-TACTT-T-GTCAA-T-Aag
gi|14 : gC-ATTT--CAAAA-GAAA--T----AAAAAATACTT-C-GTCTA-T-AAA-ATAGGGAG--ACTG-ATAT-G--ACTT-CTTC-------ATGT----------AAT-GGAC----TACTTCAGT-GG-GA-TAA-TCTT-TG-AGGTCTAGT-TTA-A------C-----TGT-------------------A----CATCG--CAAG-A-GAAA----G-TAG-CGAGCAGA-CAAA-
gi|12 : AA-AAAA--T----AAAAG-AACAT-T-GTCAA-T-AAA-ATCAGGAT---CTGTT-AT-C--TCTT-CTCCTCAATAAATATTTCCTTTCCCAG--TGATATGTTACTTTACT-GG-GA-TAA-T-TT-TA-AAGGCTAGT-GT---------C-----TGT----TAT-C-GATA-CAATG----CATCG--CAAA-T-GAAA----G-TGG-C---TATAGCAG-----------ACT---T-A----TTT-------TA----T--A------CAACCTA-ATT--
gi|20 : AT----TACTTCAGT-GGAGA-TAA-TCTCAGG-ACGGCTAG---CG-A------C-----TGT----ATTAA-GATATGAAAA----CATCG--CAA
gi|7 : atgcCTTCATT-TG-GA-TAA-T--T-AG-AGGACTA---TTG-A------C-----TGT----GAT-T-AATAGGAAAA----AT-TG--GAAA-T-GAAA----T-TAA-CT--C---GCA---T------ACATT---T------TCCAGAC----A----TGTA------CAGTCTA-TAT--CAGC-AACTC-AAATTC-AATTAA-C-ATGAA-TGC--A--G-CAT----TACCTGTAATTTATTC-TT---------GGCAGTAACTTATCAATG--TGC-AATGTTTAT-GA-CTGT-TAT-AATATCC-TTTAG--TTA--TGCATG--C-TTA-AAA----A-------TG-CGTTAAAAGTTGA-TGATC-AAT--CGTCGTTTTTTCACTGCTT-TATATT--T--AA---G--TAC-CC-ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTT-AACCCTG-CAT
gi|8 : TCAGT-GG-GA-TAA-TCTT-TG-AGGTCTAAT-TTA-------------------------C-GATAGGA-------CATCG--CAAG-T-GAAA----G-TAG-CGA-----GCAG--------------------------TAGAC-AC-A----TG--------CAAC-----TT--CGCT-AGCTC-AAACTA-AGTAAA-T-ATATA-TATGAA--A-CATA-TCTATCTGCAACT----C-TTACATGTCTTAGTGGTAACTT--TGATG--TGT-AATTTTTAC-AA-CTGA-TAT-ATT-TTT-TTT-AACTTACGTGCTTAAACTTAACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATT-TGC--TGTCGTCGTT-CGCTGTTTACATATTGAT--GA---A--TAACCC-GTAT--GT--AAGATT-T-TTTCCC--C-T-ATGACCT-TTT-GACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|11 : TC-AAACAA-AGTAAA-A-ATAAA-TA---A--G-AATT-CTTATCTGCAACT----T-TT--------------CAG-TT--TGATGAATGT-ATTTTT--C-GA-CTTT-TAT-AAT-TTT-CCC-AATTTACTTTCTTAAAC--AA--------A-------TG-TGATAAAAGTTGC-GGATCAA-C--CGTCGTCGTT-CGCTATTTTCGCATTCCT--GA---A--AAACCC-TGAT--GC--A
gi|21 : acttcgccaatttatat-TAACAAACATT--------------TAGAAATTGT-TGATT-T-TC-TGTCGTCGTT-CG
gi|15 : tAACAAACATTA-------TG-TGATAGACATTGT-TGATT-T-TC-TGTCGTCGTT-CGCTGTTTACAAATTGAT--GA---A--TAA-CCCGGAT--CT--CAGATT-TGTTC-CC--C-T-ATGACC--TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATA-AAC--CGTCTTTGTA-CGCTGTCT-CACATGTAT--GA---A--AAC-CC-GGAT--GT--AAA----T-TTT-CT--C-T-ATGACC--TTT-GACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|18 : TGT-TGATT-TGC--TGTCGTCGTT-CGCTGTTTAAACATTGAT--GA---A--TAA-CCCGGAT--GT--AAGGTT-T-TTT-CC--CCT-ATGACC--TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACGACTGTTATGATTTTTTAAAGAAACGTACTGTTAAAAATAATAAAAAGCCCTCCGTCCGTCCTTGTTTCACATTAAAAAAAACGCACAAGGATAGATATCCACCTTCTGACCTGGCCTGACGTTTGAGTATGCAAAACAATAAGAACATT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 77777777777777777777777777777 33333333 22222222222 222222222 222 11111 111 111111 2222222 9999999999999999999999999999999999999999999999999 222222222 33333333333333333333 111111 1 3333333333333333333333333333333333 111 11 111111111111111 1111 5555555555555555555555555555 11 33333333 99999999999999999999999999999999999999999999999999999999999 1 222 111111 2222222222 111 333333333333 222222 11111 1 1111
lowQualScore : 444 8 6666666 8 8 8 8 3 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 2222 77777777777777777777777777777 6 00000000 6 22222222222 7 6 1 777777777 3 7 6 000 6 66666 88 6 111 999999 3 5555555 5 2222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 3 0 5 111111 0 0 8888888888888888888888888888888888 111 4 00 4 3 555555555555555 4 4 4 4 4 1 2222 0000000000000000000000000000 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 11111111111111111111111111111111111111111111111111111111111 44 66 5 4 4 4 4 1 777 77 77 333333 8888888888 3 99 77 77 5 6 5 5 5 1 5 5 5 5 888 3 999 11 444 888888888888 3 0 3 666666 3 6 11111 666 555 0 3 5555 555555 5555 4 8 8888 4 44 3 4
lowQualScore : ... . ....... . . . . . ......... . ... . . ........... ... .. . .. .................... . . .... .... ............................. . ........ . ........... . . . ......... . . . ... . ..... .. . ... ...... . ....... . ................................................. ......... ... .................... . . . ...... . . .................................. ... . .. . . ............... . . . . . . .... ............................ .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . ........................................................... .. .. . . . . . . ... .. .. ...... .......... . .. .. .. . . . . . . . . . . ... . ... .. ... ............ . . . ...... . . ..... ... ... . . .... ...... .... . . .... . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 8 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 4444 88888888888888888888888888888 7 00000000 7 33333333333 3 7 7 555555555 2 3 7 888 7 77777 33 7 777 222222 5 2222222 7 5555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 0 7 7 999999 0 2 6666666666666666666666666666666666 666 4 66 4 2 333333333333333 0 0 0 0 4 1 4444 3333333333333333333333333333 99 4 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 99999999999999999999999999999999999999999999999999999999999 66 11 0 4 4 4 4 4 111 99 44 777777 7777777777 0 66 99 99 7 0 0 0 0 0 0 9 0 0 888 2 444 44 777 222222222222 6 1 3 888888 3 7 00000 444 333 9 6 0000 888888 2222 0 0 5555 0 88 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------TA-T-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGAN--A-GAT---TAT-GA---TAATTCATAT--A-ATCTAA--ATCAATA-CG-CAAAAAT------------CGGACA-TGCAAAAGG---G-AGGGGGGGGGG-GGGTGTA--AAGA-AAAATATTC-CAC------G--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------ATTAAAAA-----A-TGTGAAAC-ATACTTCAA------------ATCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GAAG----GGGGGGGGGGGGGG-GGTAG---CC---GA-----------------CTT----TGN--C-ATTT--C-AAAAGAAAT--AAAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCGTGT-AATGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGAGCAGA-CAAA-TGCGCT---T-A----G----------C-TAGGC--CTA----T--A------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--ACATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTTAC-GA-CT-GNTAT-ANT-TTT-TT---TAAACTTACG--TGCTTAAAC-TAACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTT-T--CTGTCGTCGTT-CGCTGTTTACACATTGAT--GA---A--TAA-C-C----GGAT--GT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGNG---------TA-T-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGAN--A-GAT---TAT-GA---TAATTCATAT--A-ATCTAA--ATCAAT--CG-CAAAAAT------------CGGACA-TGCAAAAGG---G-AGGGGGGGGGG-GGGTGTA--AAGA-AAAATATTC-CAC------G--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------ATTAAAAA-----A-TGTGAAAC-ATACTTCAA------------ATCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGNCACCGAA-GAAG----GGGGGGGGGGGGGG-GGTAG---CC---GA-----------------CTT----TGN--C-ATTT--C-AAAAGAAAT--AAAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCGTGT-AATGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGAGCAGAGCAAA-TGCGCT---T-A----G----------C-TAGGC--CTA----T-NA------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--ACATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTTAC-GA-CT-GNTAT-ANT-TTT-TT---TAAACTTACG--TGCNTAAAC-TAACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTT-T--C-GTCGTCGTT-CGCTGTTTACACATTGAT--GA---A--TAA-C-C----GGAT--GT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGATA-T-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGAC--A-GAT---TATTGA---TAATTCATATTTA-ATCTAA--ATCA-T--C-------AT------------CG--CA-TGCAAAAGGA--G-AAAGGGGGGGG-GGG-GTA--AG---AAAATATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAATAA------ATTTAAAA-----A-TGTGAAAAGATACTCCAA-------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GAAGCGGGGGGGGGGGGGGGGG-GGCAG---CCC--GA-----------------CTT----TGGG-C-ATTTTAC-AAAAAGAATTTAAAAA-TAC----TT-CGGTCAA-C-TAA-AT-GGGAGGAACTGTT--------------------AT-T--ACTT--TCCATGT-AATGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GCGAGC-GAGC-AA-TACACT---TAA----G----------C-TAGGC--------------------------------CGCT-GGCTCAAAACT--AGTAAA-TGATATAGTGA--A--ACATA-TCTATCTGCAACT----CTTT---------AGTGGTAG-TT--TGATG--TGT-ATTTTTCAC-AA-CTGGCTAT-ATT-TTTATT---TAAACTTACG--TGCGTAAAC-TAACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTT-T--CTGTCGTCGAT-CGCTGTTTA-AC--------------------C-C----GGAT--GT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGAT------ACTAAT--CA-TA-----------------TGGGCAATGCAAAAGG---G-AGGGGGGGGGGTGAGTTAA--AAGAGAAAATATTCACGC------GAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGTAA------ATTAAAAACAATGG-TGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-TA---A--GAATT-CTTATCTGCAACT----T-TT--------------CAG-TT--TGATGAATGT-ATTTTT--C-GA-CT-TTTAT-AAT-TTT-CC---CAA-TTTACT--TTCTTAAAC------AA----A-------TG-TGATAAAAGTTGC-GGATCAAC--C-GTCGTCGTT-CGCTATTTTCGCATTCCT--GA---A--AAACC-C----TGAT--GC--Ata
gi|12 : acttcgccaatttatatAAAAAAT--AAAAG-AAC----AT-TG-TCAA-T-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATAT-T--TCCT-TTCCCAGT-GATATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GC---TATAGCAGA-----CT---T-A----T----------T-T-------TA----T--A------CAACCTA-ATT--
gi|13 : AC-GA-CT-GTTAT-GAT-TTT-TTAAAGAAACGTAC---TGTTAAAAA-TAATAAA---------------------AAGC-------CCT-C--C-GTC--CGTC-C-TTGTTT-CACATTAA---AA---A--AAA-CGCACAAGGAT-------AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --C-ATTT--C-AAAAGAAATA-AAAAA-TAC----TT-CG-TCTA-T-AAA-ATAGGGAG--ACTG-A-------------------TAT-G--ACTT-CTTCATGT-AATGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GCGAGCAGA-CAAA-ataagaacatt
gi|15 : AACAAACATTA-------TG-TGATAGACATTGT-TGATTT-T--CTGTCGTCGTT-CGCTGTTTACAAATTGAT--GA---A--TAA-C-CC---GGAT--CT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAAC--C-GTCTTTGTA-CGCTGTCT-CACATGTAT--GA---A--AAC-C-C----GGAT--GT--AAA----T-TTT-CT--C-T-ATGACC-TTT-GACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------TA-T-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGAG--ATGAT---TAT-GA---TAA-TCATAT--T-ATCT-A--ATCA
gi|18 : gTGT-TGATTT-G--CTGTCGTCGTT-CGCTGTTTAAACATTGAT--GA---A--TAA-C-CC---GGAT--GT--AAGGTT-T-TTT-CC--CCT-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : G----GGGGGGGGGGGGGG-GGT-G---CC---GATATCATAAATCCAATGACTT----TGT--C-ATTT--C-AAAAGAAATA-AAAAA-TAC----TT-TG-TCAA-T-A
gi|2 : gGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------TA-T-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGAC--A-GAT---TAT-GA---TAATTC-TAT--A-ATCTAA--ATCAATATCGACAAAAAT------------CGGACA-TGCAAAAGGA--G-AGGGGGGGGGG-GGGTGTGTGAAGA-AAAATACTC-CAC------G--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------TTTAAAA--------TGTGAAAG-ATACTCCAA-------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GAAG----GGGGGGGGGGGGGG-GGCAG---CC---GA-----------------CTT----TGG--C-ATTT--C-AAAAGAAAT--AGAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCATGT-AA-GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GCGA-CAGAGCAAA-TACACT---T-A----G----------C-TAGGCTACTA----T-AA------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--ACATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTCAC-AA-CT-GATAT-ATT-TTT-TT---TAAACTTACG--TGCGTAAAC-TAACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTT-T--T-GTCGTTGTT-CGCTGTTTACACATTGGT--GA---A--TAA-C-C----GGAT--GT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : ATGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -TAACAAACATT--------------TAGAAATTGT-TGATTT-T--CTGTCGTCGTT-CG
gi|3 : tGACA--GCAAA---------GGGGGGGGGG-GGGGGTT--AACG-CAAATATTC-CAC------G--ACAATC--ATGT-AAA---TA-CAC-----AAGATA-ACCC-AGC-----AAACTCAGATAA------ATT-AAAA-----A-TGGAAAAT-ATACTTCAAAATC--------ATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GA--------TAAGGGGGGGGG-GTTAA---CT---GA------------------------TGC--C-ATTT--CAAAAAGAAAT--AAAAA-TTC----CTGCG-TCAA-T-AGACATCGGG-G--ACTG-T-------------------TAT-T--ACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGT-ATC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GCGAGCAGA--AAA-CATTGT---T-A----GACATGTATGCC-T-GAC--CTA----TCTA------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATATTG---AAGACATA-TCTATCTGCAACT----A-TTA--------AGTGGT-GATT--TGATG--TGCAATCTTTAACAAA-CT-GATATAAAT-TTG-CT---TAAACTTA-----GCG-------AACA----TTA-------TG-TGATAG-AGTTGTGTGATTT-TGCT-GTCGTCGTT-CGCTGTTTACATATTGATCCAAATCA--TAC-C-C----GGAT--GT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------TA-TTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGAG--A-------------------TTCATAT--CTATCTAAGCATTAAAA-CG-CAGAAATGTATATTATATATATATA-TACAGATGGCATGCAGGTGGGGGAG-GGGT-TA--AA---AAAAT-TTC-AAT------GGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAATAA------ATAAAAAA-----AATGTGAA-C-ATACTTCAATCCAACCTCAAGATCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GAAA----GGGGGGGGGGTAACCGATAAATTCCAT-GA-----------------CTT----TGA--CCATTTT-C-AA---------------T-T----TT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TAT-TTTACTT-TTCCGTGT-AATGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGAAA----GGGGGGCGGGGGGG---CAG---CC---GA-----------------CTT----TGCGCC-ATT---C-AAAAGAAAT--AAAAAATAC----TT-TG-TCTA-TGAAA-ATAGGGAGT-ACGATT-------------------GATGT--ACTTTCTTCATGT-AATGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GCGAGCAGA-CAAA-TGTTCT---T-A----G----------C-TAGGCT-CTA----T--A------CAACCTA-CTT--CGCT-GCCTC---ACTA-AGTAAAGT-ATATA-TGA--A--ACATAGTCTATCTGCAACT----C-TT---------AGT-GTA-CTT--TGATG---GT-ATTTTTTAC-AATCT-GATAT-A-T-TTT-TT---TAAACTTACG--TGCTTAAAG-AAACAAAC---A-------TGCTGATAAAAATTGT-CGATTC-T----GTCGTCGTT-CCGTGTTTACACATTG----GA---AGCTAACC-C----GGAT--G---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACA-TGCAA-------G-CGGGGGGGGGG-GAGT-TA--AGGA-AAAAT--TC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATTAAAAA-----T-TGTGAAAC-ACACTTCAA------------ATGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GGGA----AAGCGACGGGGAGG-GGTAA---AC---GA-----------------AATCCAATGA--C-ATTT--------GCAAT--------TTCTAGTTT-CG-TCAA-T-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT--ATGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGCGAGCAGA-CAAAGTGTGAT---T-ATATCG----------C--ATGCA-CTA----T-AAATTTACCAACCTATCTT--CGCT-GGCTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-ACTCGCA--------TACATT---T------T----------C-CAGAC--ATG----T--A------CAGTCTA-TAT--CAGC-AACTC-AAATTC-AATTAA-C-ATGAA-TGC--A--GCAT----TACCTGTAATTTATTC-TT---------GGCAGTAACTTATCAATG--TGC-AATGTTTAT-GA-CT-GTTAT-AATATCC-TT---TAG--TTATGCATGCTTAAA--------A----A-------TG-CGTTAAAAGTTGA-TGATCAAT--C-GTCGTTTTTTCACTGCTT-TATATT--T--AA---G--TAC-C-C----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GCGAGCAG------------------------------------TAGAC--ACA----T-G-------CAAC-----TT--CGCT-AGCTC-AAACTA-AGTAAA-T-ATATA-TATGAA--ACATA-TCTATCTGCAACT----C-TTACATGTCTTAGTGGTAACTT--TGATG--TGT-AATTTTTAC-AA-CT-GATAT-ATT-TTT-TT---T-AACTTACG--TGCTTAAACTTAACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTT-G--CTGTCGTCGTT-CGCTGTTTACATATTGAT--GA---A--TAACC-C----GTAT--GT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GAAA----GGGGGAGGGGTAACCGATAAAT-CCAATGA-----------------CTT----TGC--A-ATTT--C-AG---------------T-T----TT-CG-TCAA-T-AAA-ATCGGG-G--ATT------------------------------------CCGTGT-AATGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGAGCAGA-CAAA-TGTGTTATAT-A----G----------CATGCAC--CTAAAATT-TA------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 888888888888888888888888888888 33333333 22222222222 222222222 222 11111 111 111111 2222222 9999999999999999999999999999999999999999999999999 222222222 33333333333333333333 111111 1 3333333333333333333333333333333333 111 11 111111111111111 1111 5555555555555555555555555555 11 33333333 77777777777777777777777777777777777777777777777777777777777 1 222 111111 2222222222 111 333333333333 11111 1 1111
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 2222 555555555555555555555555555555 00000000 6 22222222222 7 6 1 777777777 3 7 6 000 6 66666 88 6 111 999999 3 5555555 5 2222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 111111 0 0 8888888888888888888888888888888888 111 4 00 4 3 555555555555555 4 4 4 4 4 1 2222 0000000000000000000000000000 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 55 99999999999999999999999999999999999999999999999999999999999 44 66 5 4 4 4 4 1 777 77 77 333333 8888888888 3 99 77 77 5 6 5 5 5 1 7 5 5 888 3 66 4 333 777777777777 3 0 3 0 3 7777 6 11111 666 555 4 3 1111 55 55 5555 4 8 8888 4 44 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .... .............................. ........ . ........... . . . ......... . . . ... . ..... .. . ... ...... . ....... . ................................................. ......... ... .................... . . . ...... . . .................................. ... . .. . . ............... . . . . . . .... ............................ .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . .. ........................................................... .. .. . . . . . . ... .. .. ...... .......... . .. .. .. . . . . . . . . . ... . .. . ... ............ . . . . . .... . ..... ... ... . . .... .. .. .... . . .... . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 6666 888888888888888888888888888888 00000000 7 33333333333 3 7 7 555555555 2 3 7 888 7 77777 33 7 777 222222 5 2222222 7 5555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 999999 0 2 6666666666666666666666666666666666 666 4 66 4 2 333333333333333 0 0 0 0 4 1 4444 3333333333333333333333333333 99 4 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 55 99999999999999999999999999999999999999999999999999999999999 66 11 0 4 4 4 4 4 111 99 44 777777 7777777777 0 66 99 99 7 0 0 0 0 0 6 0 0 888 2 99 5 444 222222222222 6 1 3 4 3 1111 7 00000 444 333 5 6 4444 00 00 2222 0 0 5555 0 88 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G-AGGGGGGGGGG-GGGTGTA--AAGA-AAAATATTC-CAC------G--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------ATTAAAAA-----A-TGTGAAAC-ATACTTCAA------------ATCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GAAG----GGGGGGGGGGGGGG-GGTAG---CC---GA-----------------CTT----TGN--C-ATTT--C-AAAAGAAAT--AAAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCGTGT-AATGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAAA-TGT-CT---T-A----G----------C-TAGGC--CTA-----TA-------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--ACATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTTAC-GA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-TAACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GA---A--TAACC-C----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G-AGGGGGGGGGG-GGGTGTA--AAGA-AAAATATTC-CAC------G--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------ATTAAAAA-----A-TGTGAAAC-ATACTTCAA------------ATCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GAAG----GGGGGGGGGGGGGG-GGTAG---CC---GA-----------------CTT----TGN--C-ATTT--C-AAAAGAAAT--AAAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCGTGT-AATGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAAA-TGCGCT---T-A----G----------C-TAGGC--CTA-----TA-------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--ACATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTTAC-GA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-TAACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACACATTGAT--GA---A--TAA-C-C----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGGA--G-AAAGGGGGGGG-GGG-GTA--AG---AAAATATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAATAA------ATTTAAAA-----A-TGTGAAAAGATACTCCAA-------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GAAGCGGGGGGGGGGGGGGGGG-GGCAG---CCC--GA-----------------CTT----TGGG-C-ATTTTAC-AAAAAGAATTTAAAAA-TAC----TT-CGGTCAA-C-TAA-AT-GGGAGGAACTGTT--------------------AT-T--ACTT--TCCATGT-AATGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-C-AA-TACACT---TAA----G----------C-TAGGC--------------------------------CGCT-GGCTCAAAACT--AGTAAA-TGATATAGTGA--A--ACATA-TCTATCTGCAACT----CTTT---------AGTGGTAG-TT--TGATG--TGT-ATTTTTCAC-AA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-TAACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTTTA-AC--------------------C-C----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACT-A--ATCATATG-GG-CA----------------------ATGCAAAAGG---G-AGGGGGGGGGGTGAGTTAA--AAGAGAAAATATTCACGC------GAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGTAA------ATTAAAAACAATGG-TGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-TA---A--GAATT-CTTATCTGCAACT----T-TT--------------CAG-TT--TGATGAATGT-ATTTTT--C-GA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GA---A--AAACC-C----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAAAAAAT--AAAAG-AAC----AT-TG-TCAA-T-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATAT-T--TCCT-TTCCCAGT-GATATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA----------CT---T-A----T----------T-T-------TA-----TA-------CAACCTA-ATT--
gi|13 : AC-GA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-TAATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AA---A--AAA-CGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --C-ATTT--C-AAAAGAAATA-AAAAA-TAC----TT-CG-TCTA-T-AAA-ATAGGGAG--ACTG-A-------------------TAT-G--ACTT-CTTCATGT-AATGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAAA-ataagaacatt
gi|15 : AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GA---A--TAACC-C----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GA---A--AAC-C-C----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC-TTT-GACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GA---A--TAA-C-CC---GGA--TGT--AAGGTT-T-TTT-CC--CCT-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : G----GGGGGGGGGGGGGG-GGT-G---CC---GATATCATAAATCCAATGACTT----TGT--C-ATTT--C-AAAAGAAATA-AAAAA-TAC----TT-TG-TCAA-T-A
gi|2 : gGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G-AGGGGGGGGGG-GGGTGTGTGAAGA-AAAATACTC-CAC------G--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------TTTAAAA--------TGTGAAAG-ATACTCCAA-------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GAAG----GGGGGGGGGGGGGG-GGCAG---CC---GA-----------------CTT----TGG--C-ATTT--C-AAAAGAAAT--AGAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCATGT-AA-GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAAA-TACACT---T-A----G----------C-TAGGCTACTA-----TAA------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATATA-TG---A--ACATA-TCTATCTGCAACT----C-TT---------AGTGGTAGCTT--TGATG--TGT-ATTTTTCAC-AA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-TAACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GA---A--TAA-C-C----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : ATGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -TAACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAA---------GGGGGGGGGG-GGGGGTT--AACG-CAAATATTC-CAC------G--ACAATC--ATGT-AAA---TA-CAC-----AAGATA-ACCC-AGC-----AAACTCAGATAA------ATT-AAAA-----A-TGGAAAAT-ATACTTCAAAATC--------ATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GA--------TAAGGGGGGGGG-GTTAA---CT---GA------------------------TGC--C-ATTT--CAAAAAGAAAT--AAAAA-TTC----CTGCG-TCAA-T-AGACATCGGG-G--ACTG-T-------------------TAT-T--ACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGT-ATC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AAA-CATTGT---T-A----GACATGTATGCC-T-GAC--CTATC---TA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATATTG---AAGACATA-TCTATCTGCAACT----A-TTA--------AGTGGT-GATT--TGATG--TGCAATCTTTAACAAA-CT-GATA--------------TAAATT------TGCTTAAACTTAGCGAACATTA-------TG-TGATAG-AGTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAATCA--TAC-C-C----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGCAGGTGGGGGAG-GGGT-TA--AA---AAAAT-TTC-AAT------GGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAATAA------ATAAAAAA-----AATGTGAA-C-ATACTTCAATCCAACCTCAAGATCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GAAA----GGGGGGGGGGTAACCGATAAATTCCAT-GA-----------------CTT----TGA--CCATTTT-C-AA---------------T-T----TT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TAT-TTTACTT-TTCCGTGT-AATGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGAAA----GGGGGGCGGGGGGG---CAG---CC---GA-----------------CTT----TGCGCC-ATT---C-AAAAGAAAT--AAAAAATAC----TT-TG-TCTA-TGAAA-ATAGGGAGT-ACGATT-------------------GATGT--ACTTTCTTCATGT-AATGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAAA-TGTTCT---T-A----G----------C-TAGGCT-CTA-----TA-------CAACCTA-CTT--CGCT-GCCTC---ACTA-AGTAAAGT-ATATA-TGA--A--ACATAGTCTATCTGCAACT----C-TT---------AGT-GTA-CTT--TGATG---GT-ATTTTTTAC-AATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-AAACAAAC---A-------TGCTGATAAAAATTGT-CGA--TT-CTGTCGTCG----TTCCGTGTTTACACATTG----GA---AGCTAACC-C----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G-CGGGGGGGGGG-GAGT-TA--AGGA-AAAAT--TC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATTAAAAA-----T-TGTGAAAC-ACACTTCAA------------ATGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GGGA----AAGCGACGGGGAGG-GGTAA---AC---GA-----------------AATCCAATGA--C-ATTT--------GCAAT--------TTCTAGTTT-CG-TCAA-T-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT--ATGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAAAGTGTGAT---T-ATATCG----------C--ATGCA-CTA-----TAAATTTACCAACCTATCTT--CGCT-GGCTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA--------T---T-T----T----------C-CAGAC--ATG-----TA-------CAGTCTA-TAT--CAGC-AACTC-AAATTC-AATTAA-C-ATGAA-TGC--A--GCAT----TACCTGTAATTTATTC-TT---------GGCAGTAACTTATCAATG--TGC-AATGTTTAT-GA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA---A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AA---G--TAC-C-C----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG------------------------------------TAGAC--ACA-----TG-------CAAC-----TT--CGCT-AGCTC-AAACTA-AGTAAA-T-ATATA-TATGAA--ACATA-TCTATCTGCAACT----C-TTACATGTCTTAGTGGTAACTT--TGATG--TGT-AATTTTTAC-AA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTTAACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GA---A--TAACC-C----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GAAA----GGGGGAGGGGTAACCGATAAAT-CCAATGA-----------------CTT----TGC--A-ATTT--C-AG---------------T-T----TT-CG-TCAA-T-AAA-ATCGGG-G--ATT------------------------------------CCGTGT-AATGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAAA-TGTGTTATAT-A----G----------CATGCAC--CTAAAATTTA-------CAACCTA-CTT--CGCT-GGCTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 888888888888888888888888888888 222 2222222222 222222222 1 222 11111 111 111111 3333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 1111 4444444444444444444444444444444444444444 111 11 111111111111111 1111 5555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 111111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 2222 555555555555555555555555555555 1 555 99 6 4444444444 7 6 1 777777777 3 1 6 000 6 66666 88 6 111 1 999999 3333333 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 0000 2 0000000000000000000000000000000000000000 111 4 00 555 555555555555555 4 4 4 4 4 1 2222 0000000000000000000000000000 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 1 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 333333 88888888888 0 99 77 77 2 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .... .............................. . ... .. . .......... . . . ......... . . . ... . ..... .. . ... . ...... ....... . ..................................................... ......... ... .................... . . . . .... . ........................................ ... . .. ... ............... . . . . . . .... ............................ .. . . . . . . . . . ... ........ ..... . .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. ...... ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 6666 888888888888888888888888888888 8 000 88 7 5555555555 3 7 7 555555555 2 3 7 888 7 77777 33 7 777 7 222222 3333333 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 6666 2 0000000000000000000000000000000000000000 666 4 66 444 333333333333333 0 0 0 0 4 1 4444 3333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 8 66 4 3 66 3 6 7777 6 6 55 0 555555555555555555555555555555555555555555555555555555555555 66 99 0 4 4 4 4 7 77777 66 44 777777 77777777777 7 66 99 99 1 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G-AGGGGGGGGGG-GGGT-TA--AAGA-AAAATATTC-CAC------G--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------ATTAAAAA-------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGGGGGG-GGTAG---CC---GA-----------------CTT----TGN--C-ATTT--CAAAA-GAAAT--AAAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAGA-CAA-A-CGT-N-TTA----G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCAACT----C-TT---------A-GTGGTAGCTT--TGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G-AGGGGGGGGGG-GGGTGTA--AAGA-AAAATATTC-CAC------G--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------ATTAAAAA-----A-TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AG----GGGGGGGGGGGGGG-GGTAG---CC---GA-----------------CTT----TGN--C-ATTT--CAAAA-GAAAT--AAAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAGA-CAA-A-TGT-C-TTA----G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCAACT----C-TT---------A-GTGGTAGCTT--TGATG--TGTATTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGGA--G-AAAGGGGGGGG-GGG-GTA--AG---AAAATATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAATAA------ATTTAAAA-----A-TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGGGGGGG-GGCAG---CCC--GA-----------------CTT----TGGG-C-ATTTTACAAAA-AGAATTTAAAAA-TAC----TT-CGGTCAA-C-TAA-AT-GGGAGGAACTGTT--------------------AT-T--ACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GCGA--GCGAG-CAATA-CAC-T-TAA----G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCAACT----CTTT---------A-GTGGTAG-TT--TGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACT-A--ATCATATG-GG-CA----------------------ATGCAAAAGG---G-AGGGGGGGGGGTGAGTTAA--AAGAGAAAATATTCACGC------GAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGTAA------ATTAAAAACAATGG-TGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCAACT----T-TT---------------CAG-TT--TGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AAC----AT-TG-TCAA-T-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATAT-T--TCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATAC-AAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C-----------TTA----T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --C-ATTT--CAAAA-GAAATA-AAAAA-TAC----TT-CG-TCTA-T-AAA-ATAGGGAG--ACTG-A-------------------TAT-G--ACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GCGA--GCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : G----GGGGGGGGGGGGGG-GGT-G---CC---GATATCATAAATCCAATGACTT----TGT--C-ATTT--CAAAA-GAAATA-AAAAA-TAC----TT-TG-TCAA-T-A
gi|2 : gGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G-AGGGGGGGGGG-GGGTGTGTGAAGA-AAAATACTC-CAC------G--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAATAA------TTTAAAA--------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG----GGGGGGGGGGGGGG-GGCAG---CC---GA-----------------CTT----TGG--C-ATTT--CAAAA-GAAAT--AGAAA-TAC----TT-CG-TCAA-T-AAA-ATCGGGAG--ACTGTT-------------------TAT-T--ACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GCGA---CAGAGCAA-A-TACAC-TTA----G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCAACT----C-TT---------A-GTGGTAGCTT--TGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G----GGGGGGGG-GGGT-TA--ACGC-AAA-TATTC-CAC------G--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGATAA------ATTAAAAA-------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA----GGGGGGGGGGT------TAA---CT---GA------------------------TGC--C-ATTT--CAAAAAGAAAT--AAAAA-TTC----CTGCG-TCAA-T-AGACATCGGG-G--ACTGTT--------------------AT-T--ACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GCGA--GCAGA--AA-A-CAT-TGTTA----GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCAACT----A-TT---------AAGTGGT-GATT--TGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGCAGGTGGGGGAG-GGGT-TA--AA---AAAAT-TTC-AAT------GGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAATAA------ATAAAAAA-----AATGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA----GGGGGGGGGGTAACCGATAAATTCCAT-GA-----------------CTT----TGA--CCATTTT-CAA----------------T-T----TT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TAT-TTTACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA----GGGGGGCGGGGGGG---CAG---CC---GA-----------------CTT----TGCGCC-ATT---CAAAA-GAAAT--AAAAAATAC----TT-TG-TCTA-TGAAA-ATAGGGAGT-ACGATT-------------------GATGT--ACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GCGA--GCAGA-CAA-A-TGTTC-TTA----G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCAACT----C-TT---------A-GTG-TA-CTT--TGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G-CGGGGGGGGGG-GAGT-TA--AGGA-AAAAT--TC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATTAAAAA-----T-TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA----AAGCGACGGGGAGG-GGTAA---AC---GA-----------------AATCCAATGA--C-ATTT--------GCAAT--------TTCTAGTTT-CG-TCAA-T-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGCGA--GCAGA-CAA-AGTGTGA-TTATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-ACTC--GCATA-CA------T-T-TT----------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCAACT----C-TTACATGTCTTA-GTGGTAACTT--TGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA----GGGGGAGGGGTAACCGATAAAT-CCAATGA-----------------CTT----TGC--A-ATTT--CAG----------------T-T----TT-CG-TCAA-T-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAGA-CAA-A-TGT-G-TTA----T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 111 888888888888888888888888888888 3333333 11111 1 2222222222222 1 222 11111 111 111111 333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 1111 3333333333333333333333333333333333 1111 111111111111111 1111 555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 1111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 0 111 111111111111111111111111111111 1 0000000 6 77777 6 5 6666666666666 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 0000 888888 0 8888888888888888888888888888888888 6666 4 66 0 4 777777777777777 4 4 4 4 4 1 2222 111111111111111111111111111 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 1 44 0 3 44 3 3 7777 3 3 55 4 888888888888888888888888888888888888888888888888888888888888 44 66 5 4 4 4 4 5 11111 33 77 2222 5 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . . ... .............................. . ....... . ..... . . ............. . . . ... . ..... .. . ... . ...... . ...... . ..................................................... ......... ... .................... . . . . .... ...... . .................................. .... . .. . . ............... . . . . . . .... ........................... .. . . . . . . . . . ... ........ ..... . .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. .... . ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 8 888 000000000000000000000000000000 8 0000000 7 55555 7 5 8888888888888 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 6666 111111 2 6666666666666666666666666666666666 6666 4 11 7 0 777777777777777 0 0 0 0 4 1 4444 333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 8 66 4 3 66 3 6 7777 6 6 55 0 222222222222222222222222222222222222222222222222222222222222 66 99 0 4 4 4 4 7 77777 66 44 1111 7 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------TA-T-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGAN--A-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGTAG---CC---GA-----------------CTT----TG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TAC----TT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAGA-CAA-A-CGT-T-TTA----G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------TA-T-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGAN--A-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGTAG---CC---GA-----------------CTT----TG-N--CA-TTT--CAAAA-GAAAT--AAAAA-TAC----TT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAGA-CAA-A-CGT-N-TTA----G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGATA-T-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGAC--A-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGGG-GGGG-GGCAG---CCC--GA-----------------CTT----TG-GG-CA-TTTTACAAAA-AGAATTTAAAAA-TAC----TT-CGGTC-AAC-TAA-AT-GGGAGGAACTGTT--------------------A--T-TACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GCGA--GCGAG-CAATA-CAC-T-TAA----G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCA----ACTCTTT---------A-GTGGTAG-T--TTGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACTAA---TCATATG-GG-CAA----------------------TGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG------CGAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCA----ACTT-TT---------------CAG-T--TTGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AAC----AT-TG-TC-AAT-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATA--T-TTCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATAC-AAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C-----------TTA----T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTT--CAAAA-GAAATA-AAAAA-TAC----TT-CG-TC-TAT-AAA-ATAGGGAG--ACTG-A-------------------TA--T-GACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GCGA--GCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------TA-T-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGAG--ATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ----GGGGGGGGGG-GGGG-GGT-G---CC---GATATCATAAATCCAATGACTT----TG-T--CA-TTT--CAAAA-GAAATA-AAAAA-TAC----TT-TG-TC-AAT-A
gi|2 : ggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------TA-T-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGAC--A-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA------CG--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG----GGGGGGGGGG-GGGG-GGCAG---CC---GA-----------------CTT----TG-G--CA-TTT--CAAAA-GAAAT--AGAAA-TAC----TT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GCGA---CAGAGCAA-A-TAC-ACTTA----G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA------CG--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA----GGGGGGGGGG-T------TAA---CT---GA------------------------TG-C--CA-TTT--CAAAAAGAAAT--AAAAA-TTC----CTGCG-TC-AAT-AGACATCGGG-G--ACTGTT--------------------A--T-TACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GCGA--GCAGA--AA-A-CAT-TGTTA----GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCA----ACTA-TT---------AAGTGGT-GAT--TTGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------TA-TTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGAG--A-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA------TGGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA----GGGGGGGGGGTAACC-GATAAATTCCAT-GA-----------------CTT----TGAC--CATTTT--C-------AAT----------T----TT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TATTT-TACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA----GGGGGGCGGG-GGGG---CAG---CC---GA-----------------CTT----TG-CGCCA-TT---CAAAA-GAAAT--AAAAAATAC----TT-TG-TC-TATGAAA-ATAGGGAGT-ACGATT-------------------GA--TGTACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GCGA--GCAGA-CAA-A-TGT-TCTTA----G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCA----ACTC-TT---------A-GTG-TA-CT--TTGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA----AAGCGACGGG-GAGG-GGTAA---AC---GA-----------------AATCCAATG-A--CA-TTT--------GCAAT--------TTCTAGTTT-CG-TC-AAT-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGCGA--GCAGA-CAA-AGTGTGA-TTATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-ACTC--GCATA-CA------T-T-TT----------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCA----ACTC-TTACATGTCTTA-GTGGTAACT--TTGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA----GGGGGAGGGG-TAACCGATAAAT-CCAATGA-----------------CTT----TG-C--AA-TTT--CAG----------------T-T----TT-CG-TC-AAT-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GCGA--GCAGA-CAA-A-TGT-G-TTA----T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 111 888888888888888888888888888888 3333333 11111 1 2222222222222 1 222 11111 111 111111 333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 1111 666666666666666666666666666666666 1111 1111111111 1111 555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 1111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 0 111 111111111111111111111111111111 1 0000000 6 77777 6 5 6666666666666 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 0000 888888 0 000000000000000000000000000000000 3333 4 66 1 0 44 4444444444 4 4 4 4 4 1 2222 111111111111111111111111111 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 2222 5 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . . ... .............................. . ....... . ..... . . ............. . . . ... . ..... .. . ... . ...... . ...... . ..................................................... ......... ... .................... . . . . .... ...... . ................................. .... . .. . . .. .......... . . . . . . .... ........................... .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. .... . ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 8 888 000000000000000000000000000000 8 0000000 7 55555 7 5 8888888888888 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 6666 111111 2 555555555555555555555555555555555 8888 4 11 9 7 77 9999999999 0 0 0 0 4 1 4444 333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 55 0 666666666666666666666666666666666666666666666666666666666666 66 99 0 4 4 4 4 7 77777 66 44 1111 7 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------TA-T-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGAN--A-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGTAGA------CCA--GA-----------------C-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------TA-T-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGAN--A-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGTAG-------CC---GA-----------------C-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGATA-T-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGAC--A-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGGG-GGGG-GGCAG-------CCC--GA-----------------C-TTTG-GG-CA-TTTTACAAAA-AGAATTTAAAAA-TACTT-CGGTC-AAC-TAA-AT-GGGAGGAACTGTT--------------------A--T-TACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-CAATA-CAC--T-T-AA--G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCA----ACTCTTT---------A-GTGGTAG-T--TTGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACTAA---TCATATG-GG-CAA----------------------TGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG------CGAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCA----ACTT-TT---------------CAG-T--TTGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AACAT-TG-TC-AAT-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATA--T-TTCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C------------T-TA--T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-CG-TC-TAT-AAA-ATAGGGAG--ACTG-A-------------------TA--T-GACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------TA-T-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGAG--ATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ----GGGGGGGGGG-GGGG-GGT-G-------CC---GATATCATAAATCCAATGAC-TTTG-T--CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-TG-TC-AAT-A
gi|2 : ggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------TA-T-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGAC--A-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA------CG--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG----GGGGGGGGGG-GGGG-GGCAG-------CC---GA-----------------C-TTTG-G--CA-TTT--CAAAA-GAAAT--AGAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAA-A-TACA-C-T-TA--G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA------CG--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA----GGGGGGGGGG-T------TAA-------CT---GA---------------------TG-C--CA-TTT--CAAAAAGAAAT--AAAAA-TTCCTGCG-TC-AAT-AGACATCGGG-G--ACTGTT--------------------A--T-TACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AA-A-CAT--TGT-TA--GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCA----ACTA-TT---------AAGTGGT-GAT--TTGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------TA-TTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGAG--A-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA------TGGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA----GGGGGGGGGGTAACC-GATAAATT----CCAT-GA-----------------C-TTTGAC--CATTTT--C-------AAT----------TTT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TATTT-TACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA----GGGGGGCGGG-GGGG---CAG-------CC---GA-----------------C-TTTG-CGCCA-TT---CAAAA-GAAAT--AAAAAATACTT-TG-TC-TATGAAA-ATAGGGAGT-ACGATT-------------------GA--TGTACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAA-A-TGT--TCT-TA--G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCA----ACTC-TT---------A-GTG-TA-CT--TTGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA----AAGCGACGGG-GAGG-GGTAAACGAAATCCAATGA-----------------CATTTG-C--AA-TTT--C---------T--A------GTTT-CG-TC-AAT-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAA-AGTGTGAT-TATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA------T--T-T-T--------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCA----ACTC-TTACATGTCTTA-GTGGTAACT--TTGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA----GGGGGAGGGG-TAACCGATAAAT-----CCAATGA-----------------C-TTTG-C--AA-TTT--CAG----------------T-TTT-CG-TC-AAT-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-TGT--G-T-TA--T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 888888888888888888888888888888 3333333 11111 1 2222222222222 1 222 11111 111 111111 333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 1111 88888888888888888888888888888 1111 1111111111 1111 555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 111111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 2222 555555555555555555555555555555 1 0000000 6 77777 6 5 6666666666666 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 0000 22222222222222222222222222222 5 3333 4 66 1 0 44 4444444444 4 4 4 4 4 1 2222 111111111111111111111111111 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 333333 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .... .............................. . ....... . ..... . . ............. . . . ... . ..... .. . ... . ...... . ...... . ..................................................... ......... ... .................... . . . . .... ............................. . .... . .. . . .. .......... . . . . . . .... ........................... .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. ...... ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 6666 888888888888888888888888888888 8 0000000 7 55555 7 5 8888888888888 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 6666 99999999999999999999999999999 0 8888 4 11 9 7 77 9999999999 0 0 0 0 4 1 4444 333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 55 0 666666666666666666666666666666666666666666666666666666666666 66 99 0 4 4 4 4 7 77777 66 44 777777 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGTA--GAT---------CCA-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCAACT----C-TT---------A-GTGGTAGCTT--TGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGTA--GA----------CCA--GAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCAACT----C-TT---------A-GTGGTAGCTT--TGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGGG-GGGG-GGCA--GC----------CC---GAC-TTTG-GG-CA-TTTTACAAAA-AGAATTTAAAAA-TACTT-CGGTC-AAC-TAA-AT-GGGAGGAACTGTT--------------------A--T-TACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-CAATA-CAC--T-T-AA--G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCAACT----CTTT---------A-GTGGTAG-TT--TGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACT-A--ATCATATG-GG-CA----------------------ATGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG------CGAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCAACT----T-TT---------------CAG-TT--TGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AACAT-TG-TC-AAT-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATA--T-TTCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C------------T-TA--T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-CG-TC-TAT-AAA-ATAGGGAG--ACTG-A-------------------TA--T-GACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ----GGGGGGGGGG-GGGG-GGTGCCGATATCATAAATCCAATGAC-TTTG-T--CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-TG-TC-AAT-A
gi|2 : ggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA------CG--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG----GGGGGGGGGG-GGGG-GGCA--G-----------CC---GAC-TTTG-G--CA-TTT--CAAAA-GAAAT--AGAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAA-A-TACA-C-T-TA--G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCAACT----C-TT---------A-GTGGTAGCTT--TGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA------CG--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA----GGGGGGGGGG--------TT--AA----------CT---GA----TG-C--CA-TTT--CAAAAAGAAAT--AAAAA-TTCCTGCG-TC-AAT-AGACATCGGG-G--ACTGTT--------------------A--T-TACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AA-A-CAT--TGT-TA--GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCAACT----A-TT---------AAGTGGT-GATT--TGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA------TGGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA----GGGGGGGGGGTAACC-GATA--AATT--------CCAT-GAC-TTTGAC--CATTTT--C-------AAT----------TTT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TATTT-TACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA----GGGGGGCGGG-GGGG---CA--G-----------CC---GAC-TTTG-CGCCA-TT---CAAAA-GAAAT--AAAAAATACTT-TG-TC-TATGAAA-ATAGGGAGT-ACGATT-------------------GA--TGTACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAA-A-TGT--TCT-TA--G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCAACT----C-TT---------A-GTG-TA-CTT--TGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA----AAGCGACGGG-GAGG-GGTA--AACGAAAT----CCAATGACATTTG-C--AA-TTT--C---------T--A------GTTT-CG-TC-AAT-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAA-AGTGTGAT-TATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA------T--T-T-T--------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCAACT----C-TTACATGTCTTA-GTGGTAACTT--TGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA----GGGGGAGGGG-TAACCGATA--AAT---------CCAATGAC-TTTG-C--AA-TTT--CAG----------------T-TTT-CG-TC-AAT-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-TGT--G-T-TA--T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 888888888888888888888888888888 3333333 11111 1 2222222222222 1 222 11111 111 111111 333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 1111 666666666666666666666666666666 1111 1111111111 1111 555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 1111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 2222 555555555555555555555555555555 1 0000000 6 77777 6 5 6666666666666 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 0000 777777777777777777777777777777 5 3333 4 66 1 0 44 4444444444 4 4 4 4 4 1 2222 111111111111111111111111111 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 2222 5 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .... .............................. . ....... . ..... . . ............. . . . ... . ..... .. . ... . ...... . ...... . ..................................................... ......... ... .................... . . . . .... .............................. . .... . .. . . .. .......... . . . . . . .... ........................... .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. .... . ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 6666 888888888888888888888888888888 8 0000000 7 55555 7 5 8888888888888 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 6666 999999999999999999999999999999 0 8888 4 11 9 7 77 9999999999 0 0 0 0 4 1 4444 333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 55 0 666666666666666666666666666666666666666666666666666666666666 66 99 0 4 4 4 4 7 77777 66 44 1111 7 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGT-----------AAA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA----GGGGGGGGGG-GGGG-GGT-----------AGA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGGG-GGGG-GGC-----------AG---CC---CGAC-TTTG-GG-CA-TTTTACAAAA-AGAATTTAAAAA-TACTT-CGGTC-AAC-TAA-AT-GGGAGGAACTGTT--------------------A--T-TACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-CAATA-CAC--T-T-AA--G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCA----ACTCTTT---------A-GTGGTAG-T--TTGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACT-A--ATCATATG-GG-CA----------------------ATGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG------CGAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCA----ACTT-TT---------------CAG-T--TTGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AACAT-TG-TC-AAT-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATA--T-TTCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C------------T-TA--T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-CG-TC-TAT-AAA-ATAGGGAG--ACTG-A-------------------TA--T-GACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ----GGGGGGGGGG-GGGG-GGTGCCGATATCATAAA-TCC-AATGAC-TTTG-T--CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-TG-TC-AAT-A
gi|2 : ggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA------CG--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG----GGGGGGGGGG-GGGG-GGC-----------AG---CC----GAC-TTTG-G--CA-TTT--CAAAA-GAAAT--AGAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAA-A-TACA-C-T-TA--G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA------CG--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA----GGGGGGGGGG--------T-----------TAA-C-----TGA----TG-C--CA-TTT--CAAAAAGAAAT--AAAAA-TTCCTGCG-TC-AAT-AGACATCGGG-G--ACTGTT--------------------A--T-TACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AA-A-CAT--TGT-TA--GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCA----ACTA-TT---------AAGTGGT-GAT--TTGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA------TGGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA----GGGGGGGGGGTAACC-GAT-----------AAATTCC-A-TGAC-TTTGAC--CATTTT--C-------AAT----------TTT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TATTT-TACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA----GGGGGGCGGG-GGGG---C-----------AG---CC----GAC-TTTG-CGCCA-TT---CAAAA-GAAAT--AAAAAATACTT-TG-TC-TATGAAA-ATAGGGAGT-ACGATT-------------------GA--TGTACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAA-A-TGT--TCT-TA--G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCA----ACTC-TT---------A-GTG-TA-CT--TTGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA----AAGCGACGGG-GAGG-GGTAAACG------AAA-TCCAA-TGACATTTG-C--AA-TTT--C---------T--A------GTTT-CG-TC-AAT-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAA-AGTGTGAT-TATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA------T--T-T-T--------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCA----ACTC-TTACATGTCTTA-GTGGTAACT--TTGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA----GGGGGAGGGG-TAACCGAT-----------AAA-TCC-AATGAC-TTTG-C--AA-TTT--CAG----------------T-TTT-CG-TC-AAT-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-TGT--G-T-TA--T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 888888888888888888888888888888 3333333 11111 1 2222222222222 1 222 11111 111 111111 333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 666666666666666666666666666666 1111 1111111111 1111 555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 1111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 2222 555555555555555555555555555555 1 0000000 6 77777 6 5 6666666666666 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 888 000000000000000000000000000000 5 3333 4 66 1 0 44 4444444444 4 4 4 4 4 1 2222 111111111111111111111111111 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 2222 5 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .... .............................. . ....... . ..... . . ............. . . . ... . ..... .. . ... . ...... . ...... . ..................................................... ......... ... .................... . . . . ... .............................. . .... . .. . . .. .......... . . . . . . .... ........................... .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. .... . ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 6666 888888888888888888888888888888 8 0000000 7 55555 7 5 8888888888888 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 888 555555555555555555555555555555 0 8888 4 11 9 7 77 9999999999 0 0 0 0 4 1 4444 333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 55 0 666666666666666666666666666666666666666666666666666666666666 66 99 0 4 4 4 4 7 77777 66 44 1111 7 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA---GGGGGGGGGG-GGGG-GGT-----------AAA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA---GGGGGGGGGG-GGGG-GGT-----------AAA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGG-GGGG-GGG-----------CAG-CCC----GAC-TTTG-GG-CA-TTTTACAAAA-AGAATTTAAAAA-TACTT-CGGTC-AAC-TAA-AT-GGGAGGAACTGTT--------------------A--T-TACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-CAATA-CAC--T-T-AA--G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCA----ACTCTTT---------A-GTGGTAG-T--TTGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACT-A--ATCATATG-GG-CA----------------------ATGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG------CGAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCA----ACTT-TT---------------CAG-T--TTGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AACAT-TG-TC-AAT-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATA--T-TTCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C------------T-TA--T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-CG-TC-TAT-AAA-ATAGGGAG--ACTG-A-------------------TA--T-GACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ---GGGGGGGGGG-GGGG-GGTGCCGATATCATAAA-TCC-AATGAC-TTTG-T--CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-TG-TC-AAT-A
gi|2 : ggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA------CG--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG---GGGGGGGGGG-GGGG-GGC-----------AG---CC----GAC-TTTG-G--CA-TTT--CAAAA-GAAAT--AGAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAA-A-TACA-C-T-TA--G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA------CG--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA---GGGGGGGGGG--------T-----------TAA-C-----TGA----TG-C--CA-TTT--CAAAAAGAAAT--AAAAA-TTCCTGCG-TC-AAT-AGACATCGGG-G--ACTGTT--------------------A--T-TACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AA-A-CAT--TGT-TA--GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCA----ACTA-TT---------AAGTGGT-GAT--TTGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA------TGGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA---GGGGGGGGGGTAACC-GAT-----------AAATTCC-A-TGAC-TTTGAC--CATTTT--C-------AAT----------TTT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TATTT-TACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA---GGGGGGCGGG-GGGG-C---------------A-GCC----GAC-TTTG-CGCCA-TT---CAAAA-GAAAT--AAAAAATACTT-TG-TC-TATGAAA-ATAGGGAGT-ACGATT-------------------GA--TGTACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAA-A-TGT--TCT-TA--G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCA----ACTC-TT---------A-GTG-TA-CT--TTGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA---AAGCGACGGG-GAGG-GGTAAACG------AAA-TCCAA-TGACATTTG-C--AA-TTT--C---------T--A------GTTT-CG-TC-AAT-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAA-AGTGTGAT-TATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA------T--T-T-T--------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCA----ACTC-TTACATGTCTTA-GTGGTAACT--TTGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA---GGGGGAGGGG-TAACCGAT-----------AAA-TCC-AATGAC-TTTG-C--AA-TTT--CAG----------------T-TTT-CG-TC-AAT-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-TGT--G-T-TA--T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 1111 888888888888888888888888888888 3333333 11111 1 2222222222222 1 222 11111 111 111111 333333 99999999999999999999999999999999999999999999999999999 222222222 33333333333333333333 666666666666666666666666666666 1111 1111111111 1111 555555555555555555555555555 11 33333333 888888888888888888888888888888888888888888888888888888888888 22222 11 1111 22222222222 1 1 1111 333333333333 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 2222 555555555555555555555555555555 1 0000000 6 77777 6 5 6666666666666 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 22222222222222222222222222222222222222222222222222222 111111111 888 66666666666666666666 1 0 5 5 888 000000000000000000000000000000 5 3333 4 66 1 0 44 4444444444 4 4 4 4 4 1 2222 111111111111111111111111111 00 4 4 3 3 3 3 2 3 3 999 22222222 77777 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 2222 5 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 777777777777 3 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .... .............................. . ....... . ..... . . ............. . . . ... . ..... .. . ... . ...... . ...... . ..................................................... ......... ... .................... . . . . ... .............................. . .... . .. . . .. .......... . . . . . . .... ........................... .. . . . . . . . . . ... ........ ..... .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. .... . ........... . .. .. .. . . . . . . . . . ... . . .. . .... ............ . . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 6666 888888888888888888888888888888 8 0000000 7 55555 7 5 8888888888888 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 55555555555555555555555555555555555555555555555555555 222222222 777 00000000000000000000 9 7 7 7 888 555555555555555555555555555555 0 8888 4 11 9 7 77 9999999999 0 0 0 0 4 1 4444 333333333333333333333333333 99 0 0 3 3 3 3 5 3 3 999 55555555 11111 66 4 3 66 3 6 7777 6 6 55 0 666666666666666666666666666666666666666666666666666666666666 66 99 0 4 4 4 4 7 77777 66 44 1111 7 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 222222222222 6 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA---GGGGGGGGGG-GGGG-GGT-----------AAA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA---GGGGGGGGGG-GGGG-GGT-----------AAA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATATTTA-AT-CTAA--ATCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G--ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA-GA-AGCGGGGGGGGGGGG-GGGG-GGG-----------CAG-CCC----GAC-TTTG-GG-CA-TTTTACAAAA-AGAATTTAAAAA-TACTT-CGGTC-AAC-TAA-AT-GGGAGGAACTGTT--------------------A--T-TACTT--TCCATGTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-CAATA-CAC--T-T-AA--G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCA----ACTCTTT---------A-GTGGTAG-T--TTGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AACAACA-TTATGTGAATTG-TGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATAT--AGATACT-A--ATCATATG-GG-CA----------------------ATGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG------CGAAACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCA----ACTT-TT---------------CAG-T--TTGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA----A-------TG-TGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAAT--AAAAG-AACAT-TG-TC-AAT-AAA-ATCAGGAT---CTGTTATCTCTTCTCCTCAATAAATA--T-TTCCT-TTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C------------T-TA--T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-CG-TC-TAT-AAA-ATAGGGAG--ACTG-A-------------------TA--T-GACTT-CTTCATGTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACATTA-------TG-TGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : G-TGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT--T-AT-CT-A--ATCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ---GGGGGGGGGG-GGGG-GGTGCCGATATCATAAA-TCC-AATGAC-TTTG-T--CA-TTT--CAAAA-GAAATA-AAAAA-TACTT-TG-TC-AAT-A
gi|2 : ggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT--A-AT-CTAA--ATCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA------CG--ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA-GA-AG---GGGGGGGGGG-GGGG-GGC-----------AG---CC----GAC-TTTG-G--CA-TTT--CAAAA-GAAAT--AGAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCATGTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAA-A-TACA-C-T-TA--G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACATT--------------TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA------CG--ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA-GATAA---GGGGGGGGGG--------T-----------TAA-C-----TGA----TG-C--CA-TTT--CAAAAAGAAAT--AAAAA-TTCCTGCG-TC-AAT-AGACATCGGG-G--ACTGTT--------------------A--T-TACTT-TCTCGTTTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AA-A-CAT--TGT-TA--GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCA----ACTA-TT---------AAGTGGT-GAT--TTGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACATTA-------TG-TGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT--CTAT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA------TGGGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA-GA-AA---GGGGGGGGGGTAACC-GAT-----------AAATTCC-A-TGAC-TTTGAC--CATTTT--C-------AAT----------TTT-CG-TCAAAT-AAA-ATCGGGA---ACTGTT-------------------TATTT-TACTT-TTCCGTGTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAAGA-AA---GGGGGGCGGG-GGGG-C---------------A-GCC----GAC-TTTG-CGCCA-TT---CAAAA-GAAAT--AAAAAATACTT-TG-TC-TATGAAA-ATAGGGAGT-ACGATT-------------------GA--TGTACTTTCTTCATGTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAA-A-TGT--TCT-TA--G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCA----ACTC-TT---------A-GTG-TA-CT--TTGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAAC---A-------TGCTGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG--ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAA-GG-GA---AAGCGACGGG-GAGG-GGTAAACG------AAA-TCCAA-TGACATTTG-C--AA-TTT--C---------T--A------GTTT-CG-TC-AAT-AAA-ATCGGGGG--A-TG----------------------------------TCCGTGT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAA-AGTGTGAT-TATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA------T--T-T-T--------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A---------A-------TG-CGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCA----ACTC-TTACATGTCTTA-GTGGTAACT--TTGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAAC-AAA-------TG-TGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG-----GGC-----T------AAGACACCGAA-GA-AA---GGGGGAGGGG-TAACCGAT-----------AAA-TCC-AATGAC-TTTG-C--AA-TTT--CAG----------------T-TTT-CG-TC-AAT-AAA-ATCGGG-G--ATT------------------------------------CCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-TGT--G-T-TA--T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT
blockSeqs : CTG C AGTGACA C . G A . A AT C TCGCACAC TTT A A . AGAAGGTCGATATGAAGC AG A AAGC AAACGCAGAAATGTATATTATATATAT A CATGCA T GTGT G A CACCGAGTCG C A A ATG A TTGTT TA . TAC G AATTTA . CAATGG . TCCAACCTCAAGATCCAAATTAAGGGAGGGGGCTGG TGCCA GCT GTATCTATACAACCATTAC T A T . GGGGGGTGCCGATATCATAAATCCAA A CGC T . A AG AAAAAATA G . A G C C AGT TTATCTCTTCTCCTCAATAAATAT TC A A A . G G C A G ATG AGCTGTT ATTAA AG A TT G . TTTT A G TA G AAGTGTGATTATATCGCATGCACTATAAATTTAC TC GC G . G G . . ATGA GA AG ATTT . ACATGTCTTA GC TA AA T C A A . T A A . AAA A TG T CTT CATTA C G TTG C TTTT T GATCC GCT T ACAA TT CG ATTG G C TG T A TT C A
blockSeqs : . . . . . . . . . TA C ACTTAAAT T A . . GATGATTATGA CT . AA ATATCGACAAAAATCGG A AGA . TA . A ACGCGAA A A . AT . . G . . A . . AA . AATCATCCTAATTTGAGGGAGGGGG ATTA AC TATACAAT A . . . GAGGGGTAAACGAAATCCAA . AC . . A A AAAAAATA . . . . . A AT TTTATTT T . . . . . . C . . GT ACCTGT AATCA . . . . . . . . . . AACATTGTTAGACATGTATGCCTGACCTATCTA A . . . . . . . TG A T . . AA GA . . T T . T . T A . . . A . G CTT CATTA . . AA C . A CCT TC . . . . ATT . C . . . T . .
blockSeqs : . . . . . . . . . C . ACTTAAAC T A . . CAGATTATGA T . A TATGGGCA G GA . T . A AATGGG A A . . . . A . . A . . T . ATGCCAGTAACCGCGA TTA CT TAACAAC A . . . TAACCGATAAATTCCA . T . . A G AAAAAATA . . . . . C AG TTGATG C . . . . . . C . . GT ACTGT TATC . . . . . . . . . . AATGTGTTATATAGCATGCACCTAAAATTTA C . . . . . . . GC . A . . A AC . . A T . . . A T . . . A . G AT CTTA . . CT T . A GAT A . . . . GTT . . . . . T . .
blockSeqs : . . . . . . . . . A . . . . . . GA A . A T GC . T . . CACG A . . . . . A . . A . . . . TCCAAACCTCAAGA TA GG GGGT A . . . TAACCGATAAATCCAA . G . . A G AAAAGAA . . . . . C AG TTTAT C . . . . . . C . . AT ACTGT AATC . . . . . . . . . . AATACACTTAGCTAGGCTACTATAA C . . . . . . . A . A . . A AC . . T T . . . A A . . . A . A CT CATT . . TT C . A TAT A . . . . ATT . . . . . T . .
blockSeqs : . G . T . . CACG . . . . . . . . . . . . . . TCCAAGGGGGCTG CA GG GGCT A . . . GGGGGGCAGCC . C . . A G AGAAATA . . . . . C GG ATAT T . . . . . . C . . GC A AATC . . . . . . . . . . AATGTTCTTAGCTAGGCTCTATA C . . . . . . . G . A . . G G . . A T . . . A T . . . A . G GA CAAA . . AA T . A GAT T . . . . ATT . . . . . T . .
blockSeqs : . . . . . GGGGCAGCC . C . . A G AAAAATT . . . . . A G TTAT T . . . . . . C . . AT A GATT . . . . . . . . . . TTTTCCAGACATGTA T . . . . . . . G . . . . . C . . A . . . . T . . . . . . . C CA . . TG T . A GGT T . . . . ATT . . . . . T . .
blockSeqs : . TTAAC . C . . . . AG . . . . . C A . . . . . . . . C . . AT A AATC . . . . . . . . . . TTATTTTATA C . . . . . . . . . A . . . . . . . . A . . TT T . A GAT T . . . . A . . . . . . . .
blockSeqs : . . . . T . . . . . C G . . . . . . . . C . . AT A ATC . . . . . . . . . . TAGACACATG . . . . . A . . TT T . . AA T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . A A A . . . . . . . . . . . . . TG T . . G T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . T A . . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T .
blockSeqCons : ********* A** ACTTAAAC*** A* ** N*** A*** GA***** T**** CACGG******** TA******* TACACGAC************ *** TGACCGACAAATCCA*************** C*** ** AAAAAATA** AG** TTAT*********************** T* GT* A******* C* G**** GC CATA******** GAT**
originalCons : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT--A-AT-CTAA--ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA------CG--ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACA-AT------AAGACACCGAA-GA-AA---GGGGGGGGGG-GGGG-GGT-----------AAA-TCC-A-TGAC-TTTG-C--CA-TTT--CAAAA-GAAAT--AAAAA-TACTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTT-------------------TA--T-TACTT-CTCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAAC-TTA-------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
finalCons : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-ATA--CACTATGCAAACAGTACTTAAAC---AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATATN---AT-CTA---ATCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGGGA-----GGGGGGGGGG-GGGTT----AAAGA-AAAATATTCCACGG--------ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAATA-------AGC-CAGGGTACACGAC------------AAGACACCGAA-GA-AA---GGGGGGGGGGTGACCGACAAATCCA---------------TGAC-TTTGC---CA-TTT--CAAAA-GAAATAAAAAATA--CTT-CG-TC-AAT-AAA-ATCGGGAG--ACTGTTAT-----------------------TACTTT-TCCGTGTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTAA-------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTAC-TTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-TG----AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAACATA--------TG-TGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Alignments
lowQualScore : 111 2222222 333333333 111 1 11111111111 111 11 11111111111111111111 2222 999999999999999999999999999999999999 3333333 11111 1 333333333333 1 222 11111 111 111111 333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 1111 555555555555555555555 1111 11111111 333333333333333333333333333333333333333 11111 33333333333333 888888888888888888888888888888888888888888888888888888888888 22222 11 1111 22222222222 1 1 1111 2222222222222 11111 1
lowQualScore : 444 8 6666666 8 8 8 8 222222222 8 111 0 0 88888888888 111 88 8 11 99999999999999999999 0 0 8888 8 111111111111111111111111111111111111 1 0000000 6 77777 6 5 777777777777 3 1 6 000 6 66666 88 6 111 1 999999 6 555555 5 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0 33 5 888 0000 999999999999999999999 5 3333 4 00000000 33 888 4 4 4 4 1 333333333333333333333333333333333333333 11111 4 4 3 3 3 3 2 3 3 44444444444444 77777 44 0 3 44 3 3 7777 3 3 55 4 777777777777777777777777777777777777777777777777777777777777 44 66 5 4 4 4 4 5 11111 33 77 2222 5 88888888888 0 99 77 77 1 2 5 0 5 1 0 5 5 888 0 3 66 4 2222 2 8888888888888 0 3 777 2 7777 8 11111 8888 3 7777 55 55 5555 4 2 55 4 4 99 3 4
lowQualScore : ... . ....... . . . . ......... . ... . . ........... ... .. . .. .................... . . .... . .................................... . ....... . ..... . . ............ . . . ... . ..... .. . ... . ...... . ...... . ................................................................................................. . . .. . ... .... ..................... . .... . ........ .. ... . . . . . ....................................... ..... . . . . . . . . . .............. ..... .. . . .. . . .... . . .. . ............................................................ .. .. . . . . . . ..... .. .. .... . ........... . .. .. .. . . . . . . . . . ... . . .. . .... . ............. . . ... . .... . ..... .... . .... .. .. .... . . .. . . .. . .
lowQualScore : 000 0 0000000 0 0 0 0 000000000 0 888 8 0 00000000000 888 88 0 00 88888888888888888888 8 8 0000 0 000000000000000000000000000000000000 8 0000000 7 55555 7 5 000000000000 2 3 7 888 7 77777 33 7 777 7 222222 7 000000 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 7 66 7 888 6666 666666666666666666666 0 8888 4 66666666 11 666 0 0 0 4 1 111111111111111111111111111111111111111 11111 0 0 3 3 3 3 5 3 3 88888888888888 11111 66 4 3 66 3 6 7777 6 6 55 0 666666666666666666666666666666666666666666666666666666666666 66 99 0 4 4 4 4 7 77777 66 44 1111 7 77777777777 7 66 99 99 0 3 0 0 0 0 8 0 0 888 1 2 99 5 9999 2 9999999999999 1 3 333 8 1111 9 00000 8888 6 7777 00 00 2222 0 0 55 0 0 77 6 0
consensus : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT-NT-AT-CTAAA--TCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA-CG----G-ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TATACG-AC------AAGACACCGAA--GA-AA---G----GGGGGGGGGTGANCGGCA-----GA-TCC-A-TGAC-TTTG-C--CA-TTTCA---AAA-GAAATAAAAAATACTTCG-TC-AAT-AAA-ATCGGGAG--ACTG-TT-A--T-TACTT---------------T-TCCGT-----GTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAACA-T-A-------TGTGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
Reference ( family-360 ) : GCCT---ACT-G-------CACGACGG-T-GTATTAAT-GGGGG-GGGGGGG---------T-AT-A-CACTATGCAAACAGTACTTA-AAC--AGTT--CAA-CT-T--AGA--NA-GAT---TAT-GA---TAATTCATAT-N--AT-CTAA---TCA-ATA-CG-CAAAAAT------------CGGACATGCAAAAGG---G--AGGGGGGGGGG-GGGT---T-AAAGA-AAAATATTC-CA-CG----G-ACGATCAAATGT-AAA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AAATT-AAAAA------TGTGAAAC-ATACTTCAA------------A----TCC-------AA---------G----GAG--GCTG-TCTTAA--T---A--AGC-CAGGG-----TACACG-AC------AAGACACCGAA--GA-AA---G----GGGGGGGGGTGACCGACA-----AA-TCC-A-TGAC-TTTG-C--CA-TTTCA---AAA-GAAATAAAAAATACTTCG-TC-AAT-AAA-ATCGGGAG--ACTG-TT-A--T-TACTT---------------T-TCCGT-----GTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-CGT--T-T-TA--G----------CTAG-----GC--CTA-----T--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTANTTTTTA-CGA-CT-GNTATANT-TTT-TT---TAAACTTA--CGTGCTTAAAC-T-AACAAACA-T-A-------TGTGATAGAAGTTGT-TGATTTT-CCGTCGTCG----TTCGCTGTTTACACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTGAGTGTGCAAAGCA
gi|1 : T---ACT-G-------CACGATGA-TTGTATTAAT-GGGGG-GGGGGGGGCGGTGTGAT-AT-A-C-CTATGCAAACAGTAATTATAATGTAGTT--CAAACT-TTAAGA--CA-GAT---TATTGA---TAATTCATAT-TTAAT-CTAAA--TCA--T-----CA----T------------CG--CATGCAAAAGG---AGAAAGGGGGGGGG-GGGT------AAGA-AAA-TATTC-C--------G-ACGATCAA-TGT-AA----TG-CAC-----AAGATA-ACCCCAGCAA---AAACTCAAAT------AAATTTAAAAA------TGTGAAAAGATACTCCAA-----------------TCC-------AA---------GTT--GTG--GCTG-TCTTAA--T---ACAACC-CAGGG-----TATACATAT------AAGTCACCGAA--GA-AGCGGG----GGGGGGGGGGGGGGGGCA-----G---CC---CGAC-TTTG-GG-CA-TTTTACAAAAA-GAATTTAAAAATACTTCGGTC-AAC-TAA-AT-GGGAGGAACTG-TT-A--T-TACTT---------------T--CCAT-----GTAA-TGGA-TGTCTTCAGTGG-GGA-TAA-TCTT-TG-AGGTTTAATCTTATA------CTGTAATC-GATAGGGAA--ACAT-CG--C-A-GTGGAAA----G-TA-GC--GAGCGAG-CAATA-CAC--T-T-AA--G----------CTAG-----GC--------------------------------CGC--TGG-CTCAAAACT--AGTAAA-TGATATAGT-GA--AA--CATA-TCTATCTGCA----ACTCTTT---------A-GTGGTAG-T--TTGATG--TGTATTTTTCA-CAA-CTGGCTATATT-TTTATT---TAAACTTA--CGTGCGTAAAC-T-AAC-AACATT-ATGTGAATTGTGATAGAAATTGT-TGATTTT-CTGTCGTCG----ATCGCTGTT------------------T-A-ACCC----GGA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|10 : CCT---ACT-GAGTGACACACGATGG-T-GTTTTAAT-GGGGGAGGGGGGG---------TAAT-C-CA-TATGCCAACAGT-------------TT--CAA-CT-T--AGAAGAA-GGTCGATAT-GAAGCCAGTACATATAG--ATACTAA---TCATATG-GG-CA----------------------ATGCAAAAGG---G--AGGGGGGGGGGTGAGT---TAAAAGAGAAAATATTCACG-CGA---A-ACACTCAAATGTAAAA---TG-CCA-----AAGATA-GCAA-AACAATACAGA--TAAGT------AAATT-AAAAACAATGGTGTG-AAC-ATA
gi|11 : tgaagcctTC-AAACAA-AGTAAA-A-ATAAA-T-A---AG--AATT-CTTATCTGCA----ACTT-TT---------------CAG-T--TTGATGAATGTATTTTT---CGA-CT-TTTATAAT-TTT-CC---CAA-TTTA--CTTTCTTAAAC-------AA-----A-------TGTGATAAAAGTTGC-GGATCAA-CCGTCGTCG----TTCGCTATTTTCGCATTCCT--GAA--A-A-ACCC----TGA--TGC--Ata
gi|12 : acttcgccaatttatatAA-AAAATAAAAGA-ACATTG-TC-AAT-AAA-ATCAGGAT---CTG-TT-A--T-CTCTTCTCCTCAATAAATATT-TCCTTTCCCAGTGA-TATG-TTACTTTACTGG-G-A-TAA-T-TT-TA-AAGGCTAGT-GT---------CTGTTATC-GATA-CAAT--GCAT-CG--CAA-AT-GAAA----G-TG-GCTATAGCAGA-C------------T-TA--T----------TT------------TA-----T--A-------CAACCTA-ATT
gi|13 : A-CGA-CT-GTTATGAT-TTT-TTAAAGAAACGTA--C-TGTTAAAAA-T-AATAAA---------------------AAG--------CCCT-CCGTC--CG----TCC-TTGTTT-CACATTAA---AAA--A-A-ACGCACAAGGA--T-----AGA-----TAT-CC---------ACC-TTCTGACCTGG-CCTG-ACGTTTGAGTATGCAAAACA
gi|14 : --CA-TTTCA---AAA-GAAATAAAAAATACTTCG-TC-TAT-AAA-ATAGGGAG--ACTG-AT-A--T-GACTT---------------C-TTCAT-----GTAA-TGGA-CTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAGT-TTA-A------CTGT----------------ACAT-CG--CAA-GA-GAAA----G-TA-GC--GAGCAGA-CAA-A-ataagaacatt
gi|15 : -AACAAACA-TTA-------TGTGATAGACATTGT-TGATTTT-CTGTCGTCG----TTCGCTGTTTACAAATTGAT--GAA--T-A-ACCC----GGA--TCT--CAGATT-TGTTC-CC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|16 : GTGTTAGAAGTTGT-TAATAAA-CCGTCTTTG----TACGCTGTCT-CACATGTAT--GAA----A-ACCC----GGA--TGT--AAA----T-TTT-CT--C-T-ATGACC--TTTGACCCAG-CATA-AAATTTTAGTGTGCAAAAC
gi|17 : GCCTCTGACT-G-------CACGACAG-T-GTATTAATGGGGGG-GGGGGGG---------T-AT-ATCACTATGCATA-AGTTCGCA-CAC--AGT-----A-CT-T--AGA--GATGAT---TAT-GA---TAA-TCATAT-T--AT-CTAA---TCA-
gi|18 : gTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTAAACATTGAT--GAA--T-A-ACCC----GGA--TGT--AAGGTT-T-TTTCCC--C-T-ATGACC-TTTTGACCTCG-CATG-ACGTTTGAGTGTGCAAAGCAtt
gi|19 : ---G----GGGGGGGGGTG-CCGATATCATAAA-TCC-AATGAC-TTTG-T--CA-TTTCA---AAA-GAAATAAAAAATACTTTG-TC-AAT-A
gi|2 : ggggggggGCCT---ACT-G--------ACGATGA-T-GTATTAAT-GGGGG-GGGGGTG---------T-AT-A-CACTATGCAAACAGTACTTA-AAT--AGTT--CAA-CTAT--AGA--CA-GAT---TAT-GA---TAATTC-TAT-A--AT-CTAAA--TCA-ATATCGACAAAAAT------------CGGACATGCAAAAGGA--G--AGGGGGGGGGG-GGGTGTGT-GAAGA-AAAATACTC-CA-CG------ACG-TCAAATGT-ATA---TG-CAC-----AAGATA-ACCC-AGCAA---AAACTCAAAT------AATTT-AAAA-------TGTGAAAG-ATACTCCAA-----------------TCC-------AA---------G----GGG--GCTG-TCT-AA--T---A--AAC-CAGGG-----TATACA-AT------AAGTCAC-GAA--GA-AG---G----GGGGGGGGGGGGG-GGCA-----G---CC----GAC-TTTG-G--CA-TTTCA---AAA-GAAATAGAAA-TACTTCG-TC-AAT-AAA-ATCGGGAG--ACTG-TTTA--T-TACTT---------------C-TCCAT-----GTAA--GGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-A------CTGTAATC-GATAGGAAA--ACA--CG--CAA-GT-GAAA----G-TA-GC--GA-CAGAGCAA-A-TACA-C-T-TA--G----------CTAG-----GCTACTA-----T--AA------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATATA-T-G---AA--CATA-TCTATCTGCA----ACTC-TT---------A-GTGGTAGCT--TTGATG--TGTATTTTTCA-CAA-CT-GATATATT-TTT-TT---TAAACTTA--CGTGCGTAAAC-T-AACAAACT-T-A-------TGTGATAGAAATTGT-TGATTTT--TGTCGTTG----TTCGCTGTTTACACATTGGT--GAA--T-A-A-CC----GGA--TGT--AAGATT-T-TTT-CC--C-T-ATGACC--TTTGACCTCG-CATG-ACGTCTAAGTGTGCAAAGCA
gi|20 : A-TGCA-TTACTTCAGTGGAG-A-TAA-TCTCAGG-ACGGCTAGC---G-A------CTGTATTAAGATATGAAA--ACAT-CG--CAA-t
gi|21 : -T-AACAAACA-T-----------T--TAGAAATTGT-TGATTTT-CTGTCGTCG----TTCG
gi|3 : tGACA-GCAAAGGG---G-----GGGGGGGG-GGGT---T-AACGC-AAA-TATTC-CA-CG------ACAATCA--TGT-AAA---TA-CAC-----AAGATA-ACCC-AGCAA---A--CTCAGAT------AAATT-AAAAA------TGGAAAAT-ATACTTCAA------------AATCATCCTAATTTGAG---------G----GAG--GGGG-TCTTAA--TGCCA--AGCTCAGGG-----TA-ACA-AC------AA---ATCGAA--GATAA---G----GGGGGGGGGTTA---AC---------------TGA----TG-C--CA-TTTCA---AAAAGAAATAAAAATTCCTGCG-TC-AAT-AGACATCGGG-G--ACTG-TT-A--T-TACTT---------------T-CTCGT-----TTAAATGGA-TTACTTCAGTGG-G-A-TAAGTCTT-TG-AGGTCTAATGTTA-AGCTGTTCTGTA-TC-GATAGGAAA--ACAC-CG--CAA-GT-GAAATTTTG-TA-GC--GAGCAGA--AA-A-CAT--TGT-TA--GACATGTATGCCT-G-----AC--CTA-----TCTA-------CAACCTA-CTTCGCGCTGGGCTC-AAACTA-AATAAA-T-ATATA-TTG---AAGACATA-TCTATCTGCA----ACTA-TT---------AAGTGGT-GAT--TTGATG--TGCAATCTTTAACAAACT-GATATA--------------AATTT------GCTTAAAC-TTAGCGAACA-TTA-------TGTGATAGA-GTTGTGTGATTTTGCTGTCGTCG----TTCGCTGTTTACATATTGATCCAAA--TCATACCC----GGA--TGT---AGATT-T-TTC-CC--C-TAATGACC-TTTTGACCTCG-CATGAACGTCCGAGTGTGCA
gi|4 : CT---ACTCG-------CACGGCGGCT-GTATTAAT-GGGGG-GG--------------T-ATTA-CACTATGCAAA-AGAACTTA-AAC--AGTTTTCA--CT-T--AGA--GA-------------------TTCATAT-CT-AT-CTAAGCATTA-AAA-CG-CAGAAATGTATATTATATATATATATACAGATGGCATGC-AGGTGGGGGAG-GGGT---T-AAA---AAAAT-TTC-AA-TG----GGACGATCAA--GT-AAAATGTG-CACTTGTTAAGATT--CCC-AGCAA---AAACTCAAAT------AAATA-AAAAAAA----TGTGAA-C-ATACTTCAATCCAACCTCAAGA----TCC-------AAATTAAGGGAG----GGG--GCTGGTCTTAA--C---A--ACT-CGGGGGTATCTATACA-ACCATTACAAGACACAGAA--GA-AA---G----GGGGGGGGGTAACCGATA-----AATTCC-A-TGAC-TTTGAC--CATTTTC----------AAT--------TTTCG-TCAAAT-AAA-ATCGGGA---ACTGTTT-ATTT-TACTT---------------T-TCCGT-----GTAA-TGGA-TTACCTTCGTGG------AA-TCTT-TT-GGGTCTAA--TTA-ACTGT--CTGTAATC-GATGGAAAA--A----CG--CAA-GT-GAAA----G-TA-
gi|4 : tG-TATA-ACGTCCGAGTGTGCAAtaacgtccgagtgtgcaag
gi|5 : tctactcgcacggcggctgtattaatgggggggtattacactatgcaaaagaacttaaacagttttcacttagagattcatatctatctaagcattaaaacgcagaaatgtatattatatatatatatacagatggcatgcaggtgggggaggggttaaaaaaatttcaatgggacgatcaagtaaaatgtgcacttgttaagattcccagcaaaaactcaaataaataaaaaaaatgtgaacatacttcaatccaacctcaagatccaaattaagggagggggctggtcttaacaactcgggggtatctatacaaccattacaagacacagaagaaaggggggggggtaaccgataaattccatgactttgaccattttcaattttcgtcaaataaaatcgggaactgtttattttacttttccgtgtaatggattaccttcgtggaatcttttgggtctaattaactgtctgtaatcgatggaaaaacgcaagtgaaa-AT------AAGACACCGAAA-GA-AA---G----GGGGGCGGGGG---GGCA-----G---CC----GAC-TTTG-CGCCA-TT-CA---AAA-GAAATAAAAAATACTTTG-TC-TATGAAA-ATAGGGAGT-ACGA-TTGA--TGTACTT---------------TCTTCAT-----GTAA-TGGAACTACTTCAG-GG-A-A-TAA-TCTT-TGGAGGTCTA---TTA-A------CTGTA------CAG---------T-CG--CAA-AG-AGAA----G-TA-GC--GAGCAGA-CAA-A-TGT--TCT-TA--G----------CTAG-----GCT-CTA-----T--A-------CAACCTA-CTTCGC--TGC-CTC-A--CTA-AGTAAAGT-ATATA-T-G---AAA-CATAGTCTATCTGCA----ACTC-TT---------A-GTG-TA-CT--TTGATG---GTATTTTTTA-CAATCT-GATATA-T-TTT-TT---TAAACTTA--CGTGCTTAAAG-A-AACAAACA-T-G-------C-TGATAAAAATTGT-CGATT---CTGTCGTCG----TTCCGTGTTTACACATTG----GAAGCT-A-ACCC----GGA--TG---AAGATTGT-TTT-CC--CTT-ATGACC--TTTGACCTCGCCATG-ACGTCTAAGTGTGCAAAg
gi|6 : AAAAT--------------GACATGCAA-------G--CGGGGGGGGGG-GAGT---T-AAGGA-AAA--ATTC-CACCGAGTCG-ACGATCAAATGT-AAAAT-CGACAC-----AAGATATATCC-AGCAA---AAACTCAGATAATTTAAAATT-AAAAAT-----TGTGAAAC-ACACTTCAA------------A----TGC-------CA---------G----TAACCGCGA-TCATAAT-T---A--AGG-GAGGG---------GG-GT------AAGACACCGAAGGGA-AA---GCGACGGGGAGGGGTAAACG--A-----AA-TCCAA-TGACATTTG-C--AA-TTTC------------TA------GTTTCG-TC-AAT-AAA-ATCGGGGG--A-TG-------------------------------TCCGT-----GT-A-TGGA-TTACTTCAGTGG-G-AGTAA-T-TT-TG-AGGTC-AAT-TTA-ACCTGT-CTGTAATCAGTTAGGAAAAGACATACGTTCAAGGT-GCAA----GATAGGC--GAGCAGA-CAA-AGTGTGAT-TATATCG----------C-AT-----GCA-CTA-----T--AAATTTACCAACCTATCTTCGC--TGG-CTC-AAAGTAGGGTAAA-T-ATAag
gi|7 : tCTTCATTTG-G-A-TAA-T--T-AG-AGGACTA---TTG-A------CTGTGATT-AATAGGAAA--A-AT-TG--GAA-AT-GAAA----T-TA-AC--TCGCATA-CA------T--T-T-T--------------CCAG-----AC--ATG-----T--A-------CAGTCTA-TATCAG--CAA-CTC-AAATTC-AATTAA-C-ATGAA-T-GC--AG--CAT----TACCTGTAATTTATTC-TT---------G-GCAGTAACTTATCAATG--TGCAATGTTTA-TGA-CT-GTTATAATATCC-TT---TAG--TTATGCATGCTTAAA----A----------A-------TGCGTTAAAAGTTGA-TGA---T-CAATCGTCGTTTTTTCACTGCTT-TATATT--T--AAG--T---ACCC----ATATTTGTCGAAG----T-TTT-CCTGC-T-ATGACCTTTTTAACCCTG-CATa
gi|8 : TCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA---------------C-GATAGGA-----CAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAG---------------------------------TAG-----AC--ACA-----T--G-------CAAC-----TTCGC--TAG-CTC-AAACTA-AGTAAA-T-ATATA-T-ATGAAA--CATA-TCTATCTGCA----ACTC-TTACATGTCTTA-GTGGTAACT--TTGATG--TGTAATTTTTA-CAA-CT-GATATATT-TTT-TT---T-AACTTA--CGTGCTTAAACTT-AACAAACA-A-A-------TGTGATAGAAGTTGT-TGATTTG-CTGTCGTCG----TTCGCTGTTTACATATTGAT--GAA--T-A-ACCC----GTA--TGT--AAGATT-T-TTTCCC--C-T-ATGACC-TTTTGACCTTG-CATG-ACGTCCGAGTGTGCAAAGtgtttgcaagatattctatg
gi|9 : AAAC-ATACTTCAA-----------------TCC-------AA---------ACCTCAAG--A----TCATAAATT---A--AGG-GAGGG----------G-GCT-----AAGACACCGAA--GA-AA---G----GGGGAGGGGTAACCGATA-----AA-TCC-AATGAC-TTTG-C--AA-TTTCA---G--------------T-TTTCG-TC-AAT-AAA-ATCGGG-G--A--------------------------------T-TCCGT-----GTAA-TGGA-TTACTTCAGTGG-G-A-TAA-TCTT-TG-AGGTCTAAT-TTA-ACTGT--CTGTAATC-GATAGGAAA--ACAT-CG--CAA-GT-GAAA----G-TA-GC--GAGCAGA-CAA-A-TGT--G-T-TA--T----------ATAGCATGCAC--CTAAAATTT--A-------CAACCTA-CTTCGC--TGG-CTC-AAACTA-AGTAAA-T-ATAT