lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 333 11111111111111111111 000000000000000000000000000000000000000000000000 1
lowQualScore : 2 3 5 5 8888 444 2 33 4 222 66 44444444444444444444 33 333333333333333333333333333333333333333333333333 444 2 0 3 77 444 2 6 1 3 666 4
lowQualScore : . . . . .... ... . .. . ... .. .................... .. ................................................ ... . . . .. ... . . . . ... .
lowQualScore : 2 0 0 0 5555 777 7 33 3 777 55 33333333333333333333 99 444444444444444444444444444444444444444444444444 444 5 5 5 44 777 7 1 8 1 333 4
consensus : TGAAATGCT-TT-CTT----TGGTTT--GTT-AAACGGGANATA-GAAGG-TCGCAAACA-----TTGC--A--G-AAA-AAA--T-G-CA------TANCCTG-CN---TT--NG---CGGGNTN-TGCA-ATTTT---TTTC-TGCAATGTTTGC-GACC---TTCA-TNTCCCGTTT-AAC--AAAC-AAT
Reference ( gi|3 ) : TAAAATGCT-TT-TTT----TGGTTT--GTT-AAATGGGATATACGAAGG-CCACAAACA-----TCAC--A--G-AAG-AAA--T-A-CA------TAGCCTG-CT---TT--TG---CAAGTTC-TACAAATTTT---TTTC-TGCAATTTTTGC-AACC---TTCA-TATCCCATTT-AAC--AAAC-AAT
gi|1 : TGAAATGCT-TT-CTT----TGGTGT--TTT-GAATTGG----------G-TCACAAACA-----TTGC--A--G-AAA-AAA--T-G-CA------TAACCCA-CA---TT--GGGGTCAAGGTG-TGCAAA-TTT---TGTC-TGAAATGTTTGT-GACC---TTCA-TATCTCAT
gi|4 : atttcattgatatttatgtaattagataaTGAAATA-T-TT-TTT----TGGTTT--GTT-AAAC-GGACA-ATGAAGG-TTGCAAGCA-----TTACCGA--A-AAA-AAA--T-G-CATACTAGTAACCTA-CC---TT--AG---CGTGCTCATGC-AATCTT---TTTC-Tacatgcaaaaacaaaacat
gi|13 : aagatttgttttacttcaattaTGAAATGCT-TT-CTT----TGGTTT--GTT-AAAACAGAAAT--GAAGG-TCGCAAACT-----TTAG--A--G-AAA-AAA--T-G-CA------ctctttaca
gi|16 : ggtgtaattgaataaTAAAATCCT-CT-CTT----TGCTTT--GTT-AAAAGGAATAT--GAAAG-TCGC
gi|15 : acttgaataaAGATGCT-AT-TAT----TAGTTT--ATT-AAATGGGAGAT--GAAGG-CCGGAAACA-----TTGC--A--G-GAA-AA
gi|6 : AATGGTATT-TTTGCTGTGGTTC--GTT-AAACT--ATGTATGAAAG-TAACAGACA-----TTGG--A--G-AA--AAA--T-G-AA------TAGTCTG-CA---TTA-TG---C---------CA--TTTG---TTTC-TGCAATGTTTTC-GACT---ATCG-TATATTGTTT-AAC--A
gi|1 : ATGTT-TTGTTT----TTGCAT--GT----ATGAGATAT--GAAGG-TCACAAACA-----TTTC--A--G-ACA-AAATTT-G-CA------CACCTTGACC---CCAATG---TGGGTTA-TGCA---TTT---TTTC-TGCAATGTTTGT-GACCCAATTCA-ca
gi|2 : atttcattgatatttatgtaattagataatgaaatgctttctttggtgttt-TT-CTT----TGGTTT--CTT-AAATAAGATTT--GAATG-TCACAAATA-----TTGC--A--G-CAA-AAA--T-G-TA------TAACCTG-CT------------AAAGGGA-T---AATTTA---TGAC-TGCAATGTTTGC-GACA---TTCA-TCCCCTGTTT-AA---AAAC-
gi|7 : gtgatgttatttagattataatcaaaT----TAGTTT--GTA-AAATGGGATA----AAGG-TCACAAA--------CAG--A--A-AAA-AAA--T-G-TA------GAG----------TT--AG---TGAATTT-TGCATATTAT---TTT-----GAGTTTTGCGGACC---TTCA-TCTCCCTTTT-AACGTAAAC-TATcatt
gi|7 : atttaaatcc----TAGTTTACGTT-AAAAGGGAGAT--GAAGGTCCGCAAAAC-----TCA------------AAA--T-A--A------TA---TG-CAAAATT--CA---CTAACTC-TACAT-TTTT---TTTC-TG-----TTTGT-GACC---TT---TATCCCATTT-TAC--AAAC-
gi|11 : atttaaatccttaGGTTT---TT-AAATGGGAGATA--AAAG-TCACAAACA-----TTGC--A--G-A---AAA--C-A--A------TAA------T---TT--TA---AAAA----TATA---TTT---TTCC-TGC--TGTTTGC-GACC---TTTG-TCCCCCGTTA-AAt
gi|2 : GTTT---TT-AAACAGGGGAT--GAATG-TCGCAAACA-----TTGC--A--GTCAT-AAA--T-----------TATCC---CT---TT--AG---CAGGTTA-TACA---TTT---TTGC-TGCAATATTTGT-GACA---TTCA-AATCTTATTT-AAG--AAAC-
gi|8 : gtgatgttatttagattataatcaaattctttgTTT--GTT-AA-TGGGGCA-ATGAAGG-TCGTAAACAAGGTATGAG--ACTG-AAA-AAC--T-GTCA-------ACCCTG--T---GA--CG---CGGG--C-TACGTATTTT---TC-C-TGGGATGTTCGT-AACC---TTCA-TCTCCCCTCTGAAC--Aacatt
gi|8 : T--GTTCAGAGGGGAGAT--GAAGG-TTACGAACA-----TCCC--A--G-GAA-AAA--T-A-CG------TAGCCCG-CG---TC---A---CAGGGTT-GACAGTTTTTCAGTCTCATACCTTGTTTAC-GACC---TTCATTGCCCCA-TT-AAC--AAA
gi|6 : T--GTT-AAACA--ATATACGATAG-TCGAAAACA-----TTGC--A--G-AAACAAA--TGG-CA------TAA--------------TG---CAGACTA-TTCA----TT---TTTC-TCCAATGTCTGT-TACT---TTCA-TACATAGTTT-AAC--GAAC-
gi|11 : aatggtatttttgctgtgACAAAGG-TCGCAAACA-------GC--A--G-GAA-AAA--T-A-TA------T--------T---TT--TA----AAATT-------ATTGT---TTTC-TGCAATGTTTGT-GACT---TTTA-TCTCCCATTT-AA---AAAC-ca
gi|4 : gTTTT---TTTC-GGTAATGCTTGC-AACC---TTCA-TTGTCCGTTT-AAC--AAAC-cccccgttaaa
gi|13 : aagatttgttttacttcaattatgaaatatttttttgTTT---TTTC-TCTAAAGTTTGC-GACC---TTCA-TTTCTGTTTT-AAC--AAAC-atgcatactagtaacctaccttagcgtgctcatgcaatctttttctctctttaca
gi|15 : ggtgtaattgaataatgaaatgctttctttgTT---TTCC-TGCAATGTTTCC-GGCC---TTCA-TCTCCCATTT-AAT--AAACTAATtgca
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TTATGTTGTTGTTTAAATGATAAATGAAATTCTTTGATTGTTAGACGGGATAGGAAGGTCGCTCACATTATAACCCCAAAATTAACTTATCTCTGCAACTGTAGGTGACCTTCATCCCCCGTTCAACA
Unaligned ( gi|9 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTGCAGTTGTTTCAGAAACAATCACAATATACTTGAGTGGGTGATGCAAA
Unaligned ( gi|10 ): TTTAGTTGATACAATAATTTTTATCACTTAGATAATATAATGTTTTCTTTCGTTTATTAAACAGGATGTACATGTAGCAACCATTGCAGAAAACATGTGTAACACGCGTTAGG
Unaligned ( gi|12 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTTGCAGTTGTTGCAGAAACAATACA
Unaligned ( gi|14 ): ATTAAAAAATCAAATACTTTCTTTGTTGTTTTATAGAGGCAGCTCGCATTGCAGAAAAAAAATCATAACTCGC
Alignments
lowQualScore : 22222222 333333333333333 111 111
lowQualScore : 3 3 22 22 44444444 5555 44 33 999999 5 2 7 666666666666666 4 4 55 4 222 4 1 2 111 8
lowQualScore : . . .. .. ........ .... .. .. ...... . . . ............... . . .. . ... . . . ... .
lowQualScore : 4 1 88 88 77777777 2222 66 33 666666 8 2 7 000000000000000 4 4 55 4 222 4 0 7 444 0
consensus : TGAAATGCTTTCTTTGGTTTGTT-AAACGGGATAT--GA---AGGTCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAG---CGAGNT-TTGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
Reference ( family-3573 ) : TGAAATGCTTTCTTTGGTTTGTT-AAACGGGANATA-GA---AGGTCGCAAACATTGC--AG--AAAAAATGCA------TANCCTGCNTTNG---CGGGNT-NTGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATNTCCCGTTTAAC--AAAC-AAT
gi|1 : TGAAATGCTTTCTTTGGTGTTTT-GAATTGG-------------GTCACAAACATTGC--AG--AAAAAATGCA------TAACCCACATTGGGGTCAAGGT-GTGCA-A-ATTTTG--TCTGAA-A---TGTTTGTG-ACCTTCATATCTCAT
gi|10 : atttcattgatatttatgtaattagataaAATGTTTTCTTTCGTTTATT-AAACAGGATGTA--C---ATGTAGCAACCATTGC--AG--AAAACATGTG------TAACACGCGTTAG---acatgcaaaaacaaaacat
gi|11 : tttagttgatacaataatttttatcacttagataatatTT-TAACGGGGGACA--A---AGGTCGCAAACA--GC--AG--GAAAAAT--A------TA-------TTTT---TAAAAT-T-----A-TTGTTT--TCTGCA-A---TGTTTGTG-ACTTTTATCTCCCATTTAA---AAAC-g
gi|13 : gTGAAATGCTTTCTTTGGTTTGTT-AAAACAGAAAT--GA---AGGTCGCAAACTTTAG--AG--AAAAAATGCA------
gi|14 : ggtgtaattgaataaAAATACTTTCTTTG--TTGTT-T-------TATA-GAGGCAGCTCGCA----TTGC--AGAAAAAAAAT-CA------TAACTCGC
gi|15 : attaaaaaatcTTTT--CCTGCA-A---TGTTTCCG-GCCTTCATCTCCCATTTAAT--AAACTAAT
gi|16 : agatgctattTAAAATCCTCTCTTTGCTTTGTT-AAAAGGAATAT--GA---AAGTCGC
gi|2 : acttgaataaTTCTTTGGTTTCTT-AAATAAGATTT--GA---ATGTCACAAATATTGC--AG--CAAAAATGTA------TAACCTGC--TAA---AGGGAT-----A-A-TTTATG--ACTGCA-A---TGTTTGCG-ACATTCATCCCCTGTTTAA---AAAC-
gi|3 : gtgatgttatttagattataatcaaaTAAAATGCTTTTTTTGGTTTGTT-AAATGGGATATACGA---AGGCCACAAACATCAC--AG--AAGAAATACA------TAGCCTGCTTTTG---CAAGTT-CTACA-AATTTTTT--TCTGCA-A---TTTTTGCA-ACCTTCATATCCCATTTAAC--AAAC-AATcatt
gi|4 : TGAAATATTTT-TTTGGTTTGTT-AAACGGACAAT--GA---AGGTTGCAAGCATTACCGAA--AAAAAATGCATACTAGTAACCTACCTTAG---CGTGCTCATGCA-A-TCTTTT--TCT
gi|5 : aagatttgttttacttcaattaTGAAAT----TCTTTGATT-GTT-AGACGGGATA-G-GA---AGGTCGCTCACATT-----------------A------TAACCC----------CAAAAT-T---A-A-CTTATC--TCTGCA-AC--TGTAGGTG-ACCTTCATCCCCCGTTCAAC--Actctttaca
gi|6 : ttatgttgttgtttaaatgataaaTTGCTGTGGTTCGTT-AAACTATGTAT--GA---AAGTAACAGACATTGG--AG--AAAAA-TGAA------TAGTCTGCATTA------------TGCC-A-TTTGTT--TCTGCA-A---TGTTTTCG-ACTATCGTATATTGTTTAAC--A
gi|7 : aatggtatttTCCTTAGTTTGTA-AAATGGGATA----A---AGGTCACAAACA--G---AA--AAAAAATGTA------------GAGTTAG---TGAATT-TTGCATA-TTATTT--T--G-A-G---T-TTTGCGGACCTTCATCTCCCTTTTAACGTAAAC-TATca
gi|8 : atttaaaTGTTCAGAGGGGAGAT--GA---AGGTTACGAACATCCC--AG--GAAAAATACG------TAGCCCGCGTCA----CAGGGT-TGACA-G-TTTTTCAGTCT-CATACCTTGTTTACG-ACCTTCATTGCCCCATTAAC--AAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTGCAGTTGTTTCAGAAACAATCACAATATACTTGAGTGGGTGATGCAAA
Unaligned ( gi|12 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTTGCAGTTGTTGCAGAAACAATACA
Alignments
lowQualScore : 33333333333333 111 111
lowQualScore : 1 555 5 44 0 1 33 555 33 44 555 0 888888 0 8 11111111111111 4 4 55 4 222 4 0 2 111 8
lowQualScore : . ... . .. . . .. ... .. .. ... . ...... . . .............. . . .. . ... . . . ... .
lowQualScore : 9 888 7 11 6 5 99 000 99 22 000 7 888888 4 2 88888888888888 4 4 55 4 222 4 1 7 444 0
consensus : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAG---CGAGNTT-TGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
Reference ( family-3573 ) : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAG---CGAGNTT-TGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
gi|1 : TGAAATGCTTTCTT---TGGTGTTTT-GAAT------T--G-----GG--TCACAAACATTGC--AG--AAAAAATGCA------TAACCCACATTGGGGTCAAGGTG-TGCA-A-ATTTTG--TCTGAA-A---TGTTTGTG-ACCTTCATATCTCAT
gi|10 : atttcattgatatttatgtaattagataaAATGTTTTCTT---TCGTTTATT-AAACAGGATGT--AC---ATG--TAGCAACCATTGC--AG--AAAACATGTG------TAACACGCGTTAG---acatgcaaaaacaaaacat
gi|11 : tttagttgatacaataatttttatcacttagataatatTT-TAACGGGGGAC--AA---AGG--TCGCAAACA--GC--AG--GAAAAATATA------T------TTTTA------AAATT------A-TTGTTT--TCTGCA-A---TGTTTGTG-ACTTTTATCTCCCATTTAA---AAAC-g
gi|12 : gTAAAATGCTTTCTTTGGTGGTTTGT---------ATTT--GAATTAGGTTTTGCAGTTGTTGC--AG--AAACAATACA------
gi|13 : tgaattaagtgatgatttatttaaacaaTGAAATGCTTTCTT---TGGTTTGTTAAAACAGAA-AT--GA---AGG--TCGCAAACTTTAG--AG--AAAAAATGCA------
gi|14 : ggtgtaattgaataaAAATACTTTCTT---TG--TTGTT-T-------TAT--AG---AGG--CAGCTCGCATTGC--AGAAAAAAAAT-CA------TAACTCGC
gi|15 : attaaaaaatcTTTT--CCTGCA-A---TGTTTCCG-GCCTTCATCTCCCATTTAAT--AAACTAAT
gi|16 : agatgctattTAAAATCCTCTCTT---TGCTTTGTT-AAAAGGAATAT--GA---AAG--TCGC
gi|2 : acttgaataaTTCTT---TGGTTTCTT-AAATAAGATTT--GA---ATG--TCACAAATATTGC--AG--CAAAAATGTA------TAACCTGC--TAA---AGGGAT-----A-A-TTTATG--ACTGCA-A---TGTTTGCG-ACATTCATCCCCTGTTTAA---AAAC-
gi|3 : gtgatgttatttagattataatcaaaTAAAATGCTTTTTT---TGGTTTGTT-AAATGGGATATACGA---AGG--CCACAAACATCAC--AG--AAGAAATACA------TAGCCTGCTTTTG---CAAGTTC-TACA-AATTTTTT--TCTGCA-A---TTTTTGCA-ACCTTCATATCCCATTTAAC--AAAC-AATcatt
gi|4 : TGAAATATTTT-TT---TGGTTTGTT-AAACGGACAAT--GA---AGG--TTGCAAGCATTACCGAA--AAAAAATGCATACTAGTAACCTACCTTAG---CGTGCTCATGCA-A-TCTTTT--TCT
gi|5 : aagatttgttttacttcaattaTGAAAT----TCTT---TGATT-GTT-AGACGGGATAG--GA---AGG--TCGCTCACATT-----------------A------TAACCC----------CAAAATT----A-A-CTTATC--TCTGCA-AC--TGTAGGTG-ACCTTCATCCCCCGTTCAAC--Actctttaca
gi|6 : ttatgttgttgtttaaatgataaaTTGCTG---TGGTTCGTT-AAACTATGTAT--GA---AAG--TAACAGACATTGG--AG---AAAAATGAA------TAGTCTGCATTA------------TGCC-A-TTTGTT--TCTGCA-A---TGTTTTCG-ACTATCGTATATTGTTTAAC--A
gi|7 : aatggtatttTCCT---TAGTTTGTA-AAATGGGATA----A---AGG--TCACAAACA--G---AA--AAAAAATGTA------------GAGTTAG---TGAATTT-TGCATA-TTATTT--T--G-A-G---T-TTTGCGGACCTTCATCTCCCTTTTAACGTAAAC-TATca
gi|8 : atttaaaTGTTCAGAGGGGAGAT--GA---AGG--TTACGAACATCCC--AG--GAAAAATACG------TAGCCCGCGTCA----CAGGGTT-GACA-G-TTTTTCAGTCT-CATACCTTGTTTACG-ACCTTCATTGCCCCATTAAC--AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTGCAGTTGTTTCAGAAACAATCACAATATACTTGAGTGGGTGATGCAAA
Alignments
lowQualScore : 33333333333333 111 111
lowQualScore : 1 555 5 44 0 1 33 555 33 44 555 0 888888 0 8 11111111111111 4 4 55 4 222 4 0 2 111 8
lowQualScore : . ... . .. . . .. ... .. .. ... . ...... . . .............. . . .. . ... . . . ... .
lowQualScore : 9 888 7 11 6 5 99 000 99 22 000 7 888888 4 2 88888888888888 4 4 55 4 222 4 1 7 444 0
consensus : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAG---CGAGNTT-TGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
Reference ( family-3573 ) : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAG---CGAGNTT-TGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
gi|1 : TGAAATGCTTTCTT---TGGTGTTTT-GAAT------T--G-----GG--TCACAAACATTGC--AG--AAAAAATGCA------TAACCCACATTGGGGTCAAGGTG-TGCA-A-ATTTTG--TCTGAA-A---TGTTTGTG-ACCTTCATATCTCAT
gi|10 : atttcattgatatttatgtaattagataaAATGTTTTCTT---TCGTTTATT-AAACAGGATGT--AC---ATG--TAGCAACCATTGC--AG--AAAACATGTG------TAACACGCGTTAG---acatgcaaaaacaaaacat
gi|11 : tttagttgatacaataatttttatcacttagataatatTT-TAACGGGGGAC--AA---AGG--TCGCAAACA--GC--AG--GAAAAATATA------T------TTTTA------AAATT------A-TTGTTT--TCTGCA-A---TGTTTGTG-ACTTTTATCTCCCATTTAA---AAAC-g
gi|12 : gTAAAATGCTTTCTTTGGTGGTTTGT---------ATTT--GAATTAGGTTTTGCAGTTGTTGC--AG--AAACAATACA------
gi|13 : tgaattaagtgatgatttatttaaacaaTGAAATGCTTTCTT---TGGTTTGTTAAAACAGAA-AT--GA---AGG--TCGCAAACTTTAG--AG--AAAAAATGCA------
gi|14 : ggtgtaattgaataaAAATACTTTCTT---TG--TTGTT-T-------TAT--AG---AGG--CAGCTCGCATTGC--AGAAAAAAAAT-CA------TAACTCGC
gi|15 : attaaaaaatcTTTT--CCTGCA-A---TGTTTCCG-GCCTTCATCTCCCATTTAAT--AAACTAAT
gi|16 : agatgctattTAAAATCCTCTCTT---TGCTTTGTT-AAAAGGAATAT--GA---AAG--TCGC
gi|2 : acttgaataaTTCTT---TGGTTTCTT-AAATAAGATTT--GA---ATG--TCACAAATATTGC--AG--CAAAAATGTA------TAACCTGC--TAA---AGGGAT-----A-A-TTTATG--ACTGCA-A---TGTTTGCG-ACATTCATCCCCTGTTTAA---AAAC-
gi|3 : gtgatgttatttagattataatcaaaTAAAATGCTTTTTT---TGGTTTGTT-AAATGGGATATACGA---AGG--CCACAAACATCAC--AG--AAGAAATACA------TAGCCTGCTTTTG---CAAGTTC-TACA-AATTTTTT--TCTGCA-A---TTTTTGCA-ACCTTCATATCCCATTTAAC--AAAC-AATcatt
gi|4 : TGAAATATTTT-TT---TGGTTTGTT-AAACGGACAAT--GA---AGG--TTGCAAGCATTACCGAA--AAAAAATGCATACTAGTAACCTACCTTAG---CGTGCTCATGCA-A-TCTTTT--TCT
gi|5 : aagatttgttttacttcaattaTGAAAT----TCTT---TGATT-GTT-AGACGGGATAG--GA---AGG--TCGCTCACATT-----------------A------TAACCC----------CAAAATT----A-A-CTTATC--TCTGCA-AC--TGTAGGTG-ACCTTCATCCCCCGTTCAAC--Actctttaca
gi|6 : ttatgttgttgtttaaatgataaaTTGCTG---TGGTTCGTT-AAACTATGTAT--GA---AAG--TAACAGACATTGG--AG---AAAAATGAA------TAGTCTGCATTA------------TGCC-A-TTTGTT--TCTGCA-A---TGTTTTCG-ACTATCGTATATTGTTTAAC--A
gi|7 : aatggtatttTCCT---TAGTTTGTA-AAATGGGATA----A---AGG--TCACAAACA--G---AA--AAAAAATGTA------------GAGTTAG---TGAATTT-TGCATA-TTATTT--T--G-A-G---T-TTTGCGGACCTTCATCTCCCTTTTAACGTAAAC-TATca
gi|8 : atttaaaTGTTCAGAGGGGAGAT--GA---AGG--TTACGAACATCCC--AG--GAAAAATACG------TAGCCCGCGTCA----CAGGGTT-GACA-G-TTTTTCAGTCT-CATACCTTGTTTACG-ACCTTCATTGCCCCATTAAC--AAA
blockSeqs : G TGG A CA T AC ATT TT CG AAA TACTAG G GCGTGCTCATG T A AG T CCT G A CGT T
blockSeqs : G . C CG G . . . . A . T GCAAGTTCTA . . . . C . A T .
blockSeqs : G . . CA T . . . . G . T GTGAATTTTG . . . . . . G C .
blockSeqs : A . . AG T . . . . A . C CAGGGTTGA . . . . . . A C .
blockSeqs : C . . TA T . . . . A . A AAGGGAT . . . . . . G C
blockSeqs : G . . TG T . . . . C . G CAAAATT . . . . . . G C
blockSeqs : A . . CG T . . . . A . G AAATT . . . . . . T .
blockSeqs : . . . CG A . . . . A . . TG . . . . . . C
blockSeqs : . . CT T . . . . A . . .
blockSeqs : . . TG T . . . . G .
blockSeqs : . . GG T . . . . . .
blockSeqs : . . G . . . . . .
blockSeqs : . . . . . .
blockSeqCons : CG AAGTTTG******* C**
originalCons : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAG---CGAGNTT-TGCA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
finalCons : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGCGTTAAAGTTTG-------CA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTGCAGTTGTTTCAGAAACAATCACAATATACTTGAGTGGGTGATGCAAA
Alignments
lowQualScore : 4444444444444444444444444444 111 111
lowQualScore : 1 555 5 44 0 1 33 555 33 44 555 0 888888 0 5555555555555555555555555555 4 4 55 4 222 4 0 2 111 8
lowQualScore : . ... . .. . . .. ... .. .. ... . ...... . ............................ . . .. . ... . . . ... .
lowQualScore : 9 888 7 11 6 5 99 000 99 22 000 7 888888 4 0000000000000000000000000000 4 4 55 4 222 4 1 7 444 0
consensus : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGC------GTT--A---AAGT--T--TG--CA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
Reference ( family-3573 ) : TGAAATGCTTTCTT---TGGTTTGTT-AAACGGGATAT--GA---AGG--TCGCAAACATTGC--AG--AAAAAATGCA------TAACCCGC------GTT--A---AAGT--T--TG--CA-A-TTTTTT--TCTGCA-A---TGTTTGCG-ACCTTCATCTCCCGTTTAAC--AAAC-AAT
gi|1 : TGAAATGCTTTCTT---TGGTGTTTT-GAAT------T--G-----GG--TCACAAACATTGC--AG--AAAAAATGCA------TAACCCACATTGGGGTC--A---AGGT--G--TG--CA-A-ATTTTG--TCTGAA-A---TGTTTGTG-ACCTTCATATCTCAT
gi|10 : atttcattgatatttatgtaattagataaAATGTTTTCTT---TCGTTTATT-AAACAGGATGT--AC---ATG--TAGCAACCATTGC--AG--AAAACATGTG------TAACACGC------GTT--A---acatgcaaaaacaaaacat
gi|11 : tttagttgatacaataatttttatcacttagataatatTT-TAACGGGGGAC--AA---AGG--TCGCAAACA--GC--AG--GAAAAATATA------T------T------TTT--A---AAAT--T---------A-TTGTTT--TCTGCA-A---TGTTTGTG-ACTTTTATCTCCCATTTAA---AAAC-gg
gi|12 : gTAAAATGCTTTCTTTGGTGGTTTGT---------ATTT--GAATTAGGTTTTGCAGTTGTTGC--AG--AAACAATACA------
gi|13 : tgaattaagtgatgatttatttaaacaaTGAAATGCTTTCTT---TGGTTTGTTAAAACAGAA-AT--GA---AGG--TCGCAAACTTTAG--AG--AAAAAATGCA------
gi|14 : ggtgtaattgaataaAAATACTTTCTT---TG--TTGTT-T-------TAT--AG---AGG--CAGCTCGCATTGC--AGAAAAAAAAT-CA------TAACTCGC------
gi|15 : attaaaaaatcTTTT--CCTGCA-A---TGTTTCCG-GCCTTCATCTCCCATTTAAT--AAACTAAT
gi|16 : agatgctattTAAAATCCTCTCTT---TGCTTTGTT-AAAAGGAATAT--GA---AAG--TCGC
gi|2 : acttgaataaTTCTT---TGGTTTCTT-AAATAAGATTT--GA---ATG--TCACAAATATTGC--AG--CAAAAATGTA------TAACCTGC--------T--A---AAG-------GGATA-A-TTTATG--ACTGCA-A---TGTTTGCG-ACATTCATCCCCTGTTTAA---AAAC-
gi|3 : gtgatgttatttagattataatcaaaTAAAATGCTTTTTT---TGGTTTGTT-AAATGGGATATACGA---AGG--CCACAAACATCAC--AG--AAGAAATACA------TAGCCTGC------TTTTGC---AAGT--TC-TA--CA-AATTTTTT--TCTGCA-A---TTTTTGCA-ACCTTCATATCCCATTTAAC--AAAC-AATcatt
gi|4 : TGAAATATTTT-TT---TGGTTTGTT-AAACGGACAAT--GA---AGG--TTGCAAGCATTACCGAA--AAAAAATGCATACTAGTAACCTAC------CTT--A---GCGTGCTCATG--CA-A-TCTTTT--TCT
gi|5 : aagatttgttttacttcaattaTGAAAT----TCTT---TGATT-GTT-AGACGGGATAG--GA---AGG--TCGCTCACATT-----------------A------TAACCC----------C--A---AAAT--T-------A-A-CTTATC--TCTGCA-AC--TGTAGGTG-ACCTTCATCCCCCGTTCAAC--Actctttaca
gi|6 : ttatgttgttgtttaaatgataaaTTGCTG---TGGTTCGTT-AAACTATGTAT--GA---AAG--TAACAGACATTGG--AG---AAAAATGAA------TAGTCTGC------ATT--A------------TG--CC-A-TTTGTT--TCTGCA-A---TGTTTTCG-ACTATCGTATATTGTTTAAC--A
gi|7 : aatggtatttTCCT---TAGTTTGTA-AAATGGGATA----A---AGG--TCACAAACA--G---AA--AAAAAATGTA------------GA------GTT--AGTGAATT--T--TG--CATA-TTATTT--T--G-A-G---T-TTTGCGGACCTTCATCTCCCTTTTAACGTAAAC-TATca
gi|8 : atttaaaTGTTCAGAGGGGAGAT--GA---AGG--TTACGAACATCCC--AG--GAAAAATACG------TAGCCCGC------GTC--AC--AGGG--T--TGA-CA-G-TTTTTCAGTCT-CATACCTTGTTTACG-ACCTTCATTGCCCCATTAAC--AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATTAAGTGATGATTTATTTAAACAATAAAATGCTTTCTTTGGTGGTTTGTATTTGAATTAGGTTTGCAGTTGTTTCAGAAACAATCACAATATACTTGAGTGGGTGATGCAAA