lowQualScore : 1 1 2222 1 333333333333 111 111 444444444444444 11 111 1 11 1 1 111 11 111 1 1111 1 22222 1 555555555555555555555 11111 11 1 11 111 111 3333333333333333333333333333 111 2222222 333333 11 1 1 222 11 1 1 1 111 111 111111111 11 11 2222 11
lowQualScore : 3 7 3 1111 0 3 999999999999 8 444 0 8 2 333 6 888888888888888 33 666 2 0 00 0 0 1 3 777 3 88 777 0 1111 3 5 22222 5 1 77 77 4 3 8 000000000000000000000 66666 11 5 88 77 2 111 777 222 3 99 9999999999999999999999999999 444 77 0 4 3 2 6 1 9999999 7777 44 999999 99 22 2 0 2 1 5 3 4 5 8 8 444 7 6 6 3 6 5 22 0 0 0 5 1 3 1 0 66 1 111 111 0 3 0 22 999999999 1 11 33 0 9999 8 44 1 11
lowQualScore : . . . .... . . ............ . ... . . . ... . ............... .. ... . . .. . . . . ... . .. ... . .... . . ..... . . .. .. . . . ..................... ..... .. . .. .. . ... ... ... . .. ............................ ... .. . . . . . . ....... .... .. ...... .. .. . . . . . . . . . . ... . . . . . . .. . . . . . . . . .. . ... ... . . . .. ......... . .. .. . .... . .. . ..
lowQualScore : 3 3 3 3333 0 2 000000000000 0 000 8 0 5 888 0 555555555555555 88 888 5 0 88 0 0 2 0 555 2 00 555 0 5555 3 2 88888 7 9 99 99 4 7 5 333333333333333333333 33333 00 0 55 55 0 000 555 000 0 22 5555555555555555555555555555 222 22 8 0 2 5 0 2 0000000 0000 22 888888 00 55 5 0 5 8 4 2 0 2 0 0 222 3 7 7 7 7 7 66 1 4 2 0 9 4 4 7 33 3 777 777 8 8 8 44 888888888 0 77 00 7 3333 3 00 0 33
consensus : NNATATACA-TCAATTCA-TTGTGTCCT-ATA-AAGATTT---GANNTATGAAACACAAG-AATA---CTTGTCATAT-ATAAACA-CGAAAATTNNCA---AAAAAG-GTTTA--TTAGG-TACCAA-CA-TAATTC-GTTTTTA-TGATTAATNGTTATACAT---ATCTGAGTAATATCTACT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGG--AANCCGGAGAACGTTGTGACGGGAAC-------GC--TATCGGTANAATAGCCTTTGCCGGCG-AAATGTCTGATCCAC--ACCGTGTCTCCCTNCTGAAGANTTA-GNACNACCANG-TTNGNNCCCGA-TC----TGCTAACCT--G-CAGCA-TTATANNCCANAGTTCTGACCTTCGNCGATCCATTCAGNACAATGTCTA-CATGC-TGTATTGTTTGGNAT-AG-A-CTCCGCGACA-NTNACG-AAGAANACGTAGTGNCCGTCGGTAGGGGCCGTGAANATTCCGGTGCT-AGGG-TTGTATCCGTTCCCCCGATGTTGTT-AATGAC-ANC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACNCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGCGTATTGTATATAC--ATCGTAAGTGGGAGGGCGG-TTATATGCATAAAAT
Reference ( gi|2 ) : CAATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATATGCAACACAAG-AATA---CTTGTCATAT-ATAAACA-AAAGAATTAAAA---AAAAAACGTTTA--TTACG-TACCAA-CA-TAATTC-GTTTTTA-TGATTAATTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGG--AATCCGGAGAACGTTGTGATGGGAAC-------GC--TATTAGTAGCATAGCCTTTGCCAGAG-ACATGTCTGATCCAC--ACCGTGTCGCCCTGTTGAAGCCTCA-AGACAGCCATG-TTTGCTCCCG--TC----TGCCAACTT--G-CAGCA-GTATCTCCTAAAGTTCTGACCTTTGACAATCCATTCAGGACGATGTCTACCATGC-TGTGTTGTTTGGTAT----A-CTCCACGACA-GTGACG-AAGAAGACGTAGTGTCCGTCTGTAGGGGCCGTGAAAATTCCAGTACT-GGGA-TTGTATCCA--CCCCCGATGTTGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGAATATTACACATGCTCATCGTTAGTGGGAGGGCAG-CTATATGTACGAAAT
gi|11 : ATATACA-TTAATTCAATTGTGTCCTAATA-CAGA----------------ACACAAG-AATA---CTTGTCATAT-ATAAACA-CGAAAATCAAGAGGGAGAAAGGGTTTA--TTAGA-TACCAA-CA-CAATTC-GTATTAA-TGATTAATGGTTATACAT---ATCTGAGTAATATATACT---TTAAATCACAAACT-CATTC-TA-TCTTTATTTTGAAAAG-C---GTTAA-TCTA--TAAAAGG--AAGCCGGAGAACGTTGTGACGGGAAT-------GC--TCTTGGTATAATAGCCTCTGCCA
gi|12 : cATACACA-TCAAT-CA-TTGTATCCTCATGCAAGATTTTGCAACATAGGAAACACAA--AATAAGGC--GTCATAT-TTAAACA-CCAAAATTTGCA---AAAGA---TTTAACTTAAGATACCAGTCA-TAATTC-GTTTGTACTGATTATATGTTATACAGGAAATCTGAGTAATA--TATT---TTTCATCACAAACTCCAATCTTG-TCTTTA-TTTTGAAAG-T---GTTAA-TTAT--TAAGAGG--AAACCGGAGAAtt
gi|1 : TACAATCAAATCA-TAGTGTC----TA-AAGATTT---GAACTATGAAACACAAGGAAAA---TTTGTCATATTGTAAA-A-AAAAAATTGCTA---GAAAG----TAA--TTAGA-TAC-AA-CAAGAATTT-GTTTTTA-TGATTAATGATTATACAT---ATCTGAGT--TA-CTACTCCATTACATTACGAACT-CAATC-AGATCTTTATTTTGAATAG-TGG-GTTAATTTTAATTAAAAGGGCAA-CCGGAGAAAGTTGTGA-GGGAACTGTTTCGGC--TAT-----GAATAGCCTTTGCCACCT-AGATGTCTGATCCACATACCGTGTCTCCTTGCTGAAG-CTCATAGATAA-CATGTTTTGCTCCCG--TC----TGGTAAGCT--G-CAGAACCTATATCCT-AAGTTCTGACCTTGGATAA-CCGTTCAGGACAATGTCCA-CATGCTTGTATTGTTTGTTAT----ATCTCCACGACATGTGACGCAAGAAGACGTAGTGCCCGTCTGTAGGGGGCGTGAAAAATTCAGTACTCGGGATTTGTATCCA--CCCCCGATGTTGTTAAATGACGATCACGGAATATACTAAAGT-CCACTGTCC--GTTACACCTGTCTGAACGTCACCC---ACGTGAAGGCTTACGGTCTTCTTA---AGA---TC-AATG---GAA----TGA--AAATTAGCGTATCGTGTATA---ATCATAAGTGGGAAGGCAGATTATATGCCTAAAATaacg
gi|17 : aagA-AAGATTT---GAGTTATGAAACAAAAG-AATA---ATTGTCATAT-ATAa
gi|5 : AACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAAATT--CC---AAAAAACGTTTA--TTACG-TACCAA-CA-TAATTCTTTTTTTA-TGATTAGTTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-CCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGG--AAGCCGGAGAACGTTGTGATGGGAAC-------GC--TATTACTAGCATAGCCTCTACCAGAG-AAATGTCTGATCCAC--ACCGTGTTTCCCTGCTGAAGCCTTA-AGATAACCATG-TTTGCCCCCG--TC----TGCCAACCT--G-CAGCA-TCATCTCCTAAAGTTCTGACCTTTTACGATCCATTCAGGACAATGTCAACCTTGC-TGTATTGTTTGGAAT----A-CTCCACAACA-GTGACG-AAGAAGACATAGTGCCCGTCTGTAGGGACCGTGAAAATTCCTGTACT-GGGA-TTGTATCCA--CTCCCGATGTTGTT-AATGAC-AAC-CGGAA-ACACTAATGTTCCGCTGTTCCAGGTACTACTCCTAG-ACGTCACACCC
gi|4 : TTTG-TTT-AAAAG-CTCAGTCAA----A--TAAG--G--AAACCGGAGAATGTGGTAATAGGACC-------GT--CGGC-GTA--ATAACCTGTTCCGGAGTACCTTTTT-ACCCAG--ACGGTTTGTCCCTTCTGAAGAGTTA-GCACCACCAAA-TTGGGGCCCGAATC-----GT-AACTT----C--CA-GTATAGGCCATAGTTCTGACTTTCGTTAATCCATTTAACACAATGTCTA-CATA--TATATT-TTTTGTGTTAGAA-CTCTG-GACA-TTCACG-AAGAACACGTAGTTGCCGTTGGTAGGAGCAGTAAATATTCCGTTGCT-AGGG-TTGTATCCGTTTCCCTG--GTTAGT-GATGAT-AAC-TGGAA-ACACCAAGGTGCTGCCGCTCCAGGAACTGTCAGCTG-ATGATACCGTGGCACTAAATGC-AAC---CCTTTTA---GGAATGTCT-ACAAATAAAGTTCTCATTAAATAA
gi|8 : cctcgatatagaagaaaagataaaaaggtacttgttattactcttgtatgataggttagctaatcatatatatagtacaaactataaaaaagaatatcaacgtgaaatactctcaattattattcataattggataTTA-TCTAAAATGTC---CTTAT-TTTA--TATGAGG--AATCCAGAGAAGCTTGTTAATGGAGC-------ACCGTAT--GCATAATAACCTTTGCCGGCA-AAATGatcgtcaaatcgtttccttttc
gi|6 : cTAA-TCAA--T--GAGA--AACCCGGAGAATGTGGTAACAGG----------TC--CACTGGCGGAGTAACCTTTTCCGGAA-TAATGCTTGACCCAC--ACCCTGTCTCCCTTCTGAAGAGTTA-GCACCGCTAAA-TTGGGGCCCGATTCGTAATACTCACTTCCGCCACCA-TTGTAGGCCATTGTTCTTACTTTTGTCGATCCATTCAACACAATGTCTA-CATA--TATAGAATTTGAAACAAA-A-CTCTGC-ACA-TTCACG-AAAAACACGTAGTTGCCGTTGGTAGGGGCGGTAAACATCCCGTTGCT-AGGG-TTGTATCCGTTTCCCTG--GTTAGT-GATGAC-CGC-GGGAA-ACACCAAAGTGCCGCTGTTCCAGGAAATACTGGATG-ATGTCACGAAGGCAGTAAAGGC-CACcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaagtgaccgtcgacaggggctgtgaagattccggtgttagggtcgtatcctcctcctatattgtacacgacacgtggaaacactaatgtaccgctgttccaggtgctgctagaagacgacactcccacagtgaaggcaacctttttggttagatctaaaaaaaaaaaataagctaagattgtttatcaagtataccaagcaa
gi|16 : tcattcaatttgattaccctttacaaacaatatctttaaattatcGGGAACT------GT--T-TCGGTATGATAGCCTTTGCCACCA-GCATGTCTGATCCAC--ACCGTGTCcttttggatcacgtctgcaaataaatattgcattaataa
gi|8 : agACGAAGTGACCGTCGACAGGGGCTGTGAAGATTCCGGTGTT-AGGG-TCGTATCCT--CCTCCTATATTGTA-CACGAC-ACG-TGGAA-ACACTAATGTACCGCTGTTCCAGGTGCTGCTAGAAG-ACGACACTCCCACAGTGAAGGC-AAC---CTTTTTGGTTAGA---TCTAA--AAAAAA------A--AAATAAG
gi|7 : cttatctaaaatgtccttattttatatgaggaatccagagaagcttgttaatggagcaccgtatgcataataacctttgccggcaaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGATGTTGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGAATATTACACATGCTCATCGTTAGTGGGAGGGCAG-CTATATGTACGAAATctaagattgtttatcaagtataccaagcaa
gi|9 : A-ATACTAAAGTCCCGCTGTTCCAGTTGCCATTGGATG-ACGTTACACCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATTAA----TCA--AATTCAGCTTATT-TATATAC----CGCAAGTGGGAGGAGGA-TTATATTCATAAAATaattcattataatgtataccatgaacaatccacgtaagcacttgtgaattcatggaatactgtacaatgaaaaggattattacgcctatattgtgaagttatgacatttacccaacatttatattgcagattaaagaaaaacgaacaaggaagctaacaatcaggaacttacaggcagaaacgtcaccagacacattcgcagattttttcccaatatcccatcaaagtgtccaaaccaaggcattgtaaagattgaaataaaatagataaggaggacaatgtttatcatattataaa
gi|15 : CACTGTTCCAGGTACTACTGGATG-ACGTCACTCCCGCCGTGAAGGC-TACTGTCCTCTTA---AGA---TCTatctttttattaatacaagaagacttacaccataaaattcatatacacaaattaagaagataataaacatatatgtatatgttccgttggtcatttttaaagttgatgtcacatcttattttgcagattaaaggggaaaaatataaaaatagctatctacagaccaaaaacgtcaccagagcattcacaaaaaaaaataagatttctaattgaccaaaagtgtcaaatttatttagtctaccaacattgaacgatttaaaaaaagaaataaaaagaaatgatatgtatcaatattatacat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): CCTCTATAGAACAAATATGATAATAAATCTTAGGTTGATATACTGTTACTTATGTATCACATTTGTGTCCTATTATTATACCTTACAAGTGTAAAGATATGAAAATATCAATGTGAAAAGCTTTATGATTATTGGTCAATATATTGGATGATTTGTTGAAAATTCCGTTTCAAACTAAGGGAAAAGAGAATGTGTGATGGACCGTGGTATAACAGATCAGAGTAACTTTTAAGGGCCAGAGGTTTGCTCTTTGAGGCAGTTGACCAGCCAAGTGTTGGGACGAATGCCGTCACTAGCTAGCCAGAGTGTAAGTAGGGATGTTTTCATGTACTTTTGTTGATCCAGATTAATACAATATTTACTAGTATTGGGTAACGATAATGCCACTTTCTAAAAACCCAGCGTAGTTGCGTGGAGGGAGACGGGTAAAGTTTCACGATGCTATGGTTGTAAGCAGTTCCCTGGTTTAAGTGATGATGACGGGAAAACCAGTCGAGGTGGACTTCGCCATAGGGAAGATAGTCAGAGTGAGGAACGTGGCACTAAATGCAACAGTATATTAGCGAATAGTCTAAAATAGATACGTTATGGCTTAAATA
Unaligned ( gi|10 ): ATCCATTTAATACAATATCTACATAGATAAATTGGGTACCATAACTCTGCACATTCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTACCCTTTTAGGAATGTCTACAAATAAACGTTGCATTAAATAAATCGTCAAATCATTTTCATTTT
Unaligned ( gi|13 ): ACATTATGGACCAGGTAAAGACATACGTTCCGGAAGTTGGAGCAATAAAGATTCCGTCGTAAGCGTTATATCCGTGCCCTTTGTTTAACG
Unaligned ( gi|14 ): TAGTAATGATCATGGGAAACATTAAAGTGTCGTTGTTCGTAGCACGGAGGCAGTAAAGACCGCCTTTTTAGACAAATCTACAAATGAAT
Alignments
lowQualScore : 1 1 33333 111 111 1111 1111 11 111 1 111 1 11111 11111 11111 22222222222 11 1111 1111 3333 222 1 111 111111111 11111 3333 1
lowQualScore : 0 3 0 2 00000 444 44 6 111 6 99 555 7777 8888 11 3 8 8 8 8 8 8 8 444 0 0 444 8 8 8 1 3 88888 5 0 66 5 1 1 7 33333 99999 555 99 1 33333 11 1 1 8 1 22 55555555555 11 8 2222 222 8 4 1 1 6 6 9999 66 3333 9 77 1 6 6 1 11 3 3 1 0 77 444 5 5 5 1 55 4 1 5 1 4 0 2 1 1 55 1 0 555 777 88 1 0 0 333333333 66666 3 3333 4 0
lowQualScore : . . . . ..... ... .. . ... . .. ... .... .... .. . . . . . . . . ... . . ... . . . . . ..... . . .. . . . . ..... ..... ... .. . ..... .. . . . . .. ........... .. . .... ... . . . . . . .... .. .... . .. . . . . .. . . . . .. ... . . . . .. . . . . . . . . . .. . . ... ... .. . . . ......... ..... . .... . .
lowQualScore : 0 2 0 5 88888 000 88 7 777 7 66 222 0000 8888 00 2 0 0 0 0 0 0 8 000 8 6 000 0 0 0 4 0 11111 0 5 99 0 0 7 6 11111 55555 333 22 0 44444 88 0 0 0 0 00 00000000000 00 0 4444 666 8 6 0 0 7 7 5555 22 3333 3 77 0 7 7 0 77 0 0 0 7 99 111 0 0 0 0 22 4 0 3 1 0 7 4 6 1 66 7 7 666 888 11 1 4 1 888888888 33333 7 2222 0 0
consensus : NNATATACA-TCAATTCA-TTGTGTCCTCATA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTT-TA-TGATTA-ATNATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAAC-GCTGTCGG-TA-TAATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAGNCT--TAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGACGATCCATTCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNNATA-A-CTCCGCGACA-NTNACG-AAGA-ANACGTAGTGNCCGTCGGTAGGGGCCGTGAANATTCCGGTGCTAGGG--TTGTATCCGTTCCCCCGATGTTGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC---GTATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
Reference ( family-3569 ) : NNATATACA-TCAATTCA-TTGTGTCCT-ATA-AAGATTT---GANNTATGAAACACAAG-AATA---CTTGTCATAT-ATAAACACGAAAATTNNCAA----AAAAG-GTTTA--TTAGG-TACCAA-CA-TAATTCGTTTT-TA-TGATTA-ATNGTTATACAT---ATCTGAGTAATATCTACT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAAC-GCTATCGG-TA-NAATAGCCTTTGCCGGCGAAATGTCTGATCCAC--ACCGTGTCTCCCTNCTGAAGANT--TAGNACNACCANG-TTNGNNCCCGATCTG-----CTAAC--CTGC-AGCA-TTATANNCCANAGTTCTGACCTTCGNCGATCCATTCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGGNATAGA-CTCCGCGACA-NTNACG-AAGA-ANACGTAGTGNCCGTCGGTAGGGGCCGTGAANATTCCGGTGCTAGGG--TTGTATCCGTTCCCCCGATGTTGTT-AATGAC-ANC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACNCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC---GTATTGTATATA--CATCGTAAGTGGGAGGGC-GGTTATATGCATAAAAT
gi|1 : TACAATCAAATCA-TAGTGTC----TA-AAGATTT---GAACTATGAAACACAAGGAAAA---TTTGTCATATTGTAAAAA-AAAAATTGCTAG----AAAG----TAA--TTAGA-TAC-AA-CAAGAATTTGTTTT-TA-TGATTA-ATGATTATACAT---ATCTGAGT--TA-CTACTCCATTACATTACGAACT-CAATC-AGATCTTTATTTTGAATAG-TGG-GTTAATTTTAATTAAAAGGGCAACCGGAGAAAGTTGTGA-GGGAACTGTT-TCGGCTATGAATAGCCTTTGCCACCTAGATGTCTGATCCACATACCGTGTCTCCTTGCTGAAG-CTCATAGA--TAACATGTTTTGCTCCCG-TCTG-----GTAAG--CTGC-AGAACCTATATCCTA-AGTTCTGACCTTGGATAA-CCGTTCAGGACAATGTCCA-CA-T-GCTTGTATTGTTTGTTATAT--CTCCACGACATGTGACGCAAGA-AGACGTAGTGCCCGTCTGTAGGGGGCGTGAAAAATTCAGTACTCGGGATTTGTATCCA--CCCCCGATGTTGTTAAATGACGATCACGGAATATACTAAAGT-CCACTGTCC--GTTACACCTGTCTGAACGTCACCC---ACGTGAAGGCTTACGGTCTTCTTA---AGA---TC-AATG---GAA----TGA--AAATTAGC---GTATCGTGTATA---ATCATAAGTGGGAAGGCAGATTATATGCCTAAAAT
gi|10 : aagATCCATTTAATACAATATCTA-CA-TAGA-TAAATTGGGTACCATA-A-CTCTGC-ACA-TTCACa
gi|11 : ATATACA-TTAATTCAATTGTGTCCT-A----------------ATACAGAACACAAG-AATA---CTTGTCATAT-ATAAACACGAAAATCAAGAGGGAGAAAGG-GTTTA--TTAGA-TACCAA-CA-CAATTCGTATT-AA-TGATTA-ATGGTTATACAT---ATCTGAGTAATATATACT---TTAAATCACAAACT-CATTC-TA-TCTTTATTTTGAAAAG-C---GTTAA-TCTA--TAAAAGGA-AGCCGGAGAACGTTGTGACGGGAAT-GCTCTTGG-TA-TAATAGCCTCTGCCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctacccttttaggaatgtctacaaataaacgttgcattaaataaatcgtcaaatcattttcatttt
gi|12 : cATACACA-TCAAT-CA-TTGTATCCTCATGCAAGATTTTGCAACATAGGAAACACAA--AATAAGGC--GTCATAT-TTAAACACCAAAATTTGCAA----AA--G-ATTTAACTTAAGATACCAGTCA-TAATTCGTTTG-TACTGATTATAT-GTTATACAGGAAATCTGAGTAATA--TATT---TTTCATCACAAACTCCAATCTTG-TCTTTA-TTTTGAAAG-T---GTTAA-TTAT--TAAGAGGA-AACCGGAGAAatt
gi|13 : -AAGACATACGT----TCCGGAAGTTGGAGCAATAAAGATTCCGTCGTAAGCG--TTATATCCGTGCCCaacg
gi|14 : acattatggaccaggtaT-AATGAT-CAT-GGGAA-ACATTAAAGTGTCGTTGTTC---GTAGCAC-GGA-G------------GCAGTAAAG----ACCGCCTTTTTAGACAAA---TCT-ACAAATGAA----Ttttgtttaacg
gi|15 : tagCACTGTTCCAGGTACTACTGGATG-ACGTCACTCCCGCCGTGAAGGC-TACTGTCCTCTTA---AGA---TCT
gi|16 : GGGAACTGTT-TCGG-TA-TGATAGCCTTTGCCACCAGCATGTCTGATCCAC--ACCGTGTC
gi|17 : agA-AAGATTT---GAGTTATGAAACAAAAG-AATA---ATTGTCATAT-ATA
gi|2 : ATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATATGCAACACAAG-AATA---CTTGTCATAT-ATAAACAAAAGAATTAAAAA----AAAAACGTTTA--TTACG-TACCAA-CA-TAATTCGTTTT-TA-TGATTA-ATTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ATCCGGAGAACGTTGTGATGGGAAC-GCTATTAG-TA-GCATAGCCTTTGCCAGAGACATGTCTGATCCAC--ACCGTGTCGCCCTGTTGAAGCCT--CAAGACAGCCATG-TTTGCTCCCG-TCTG-----CCAAC--TTGC-AGCA-GTATCTCCTAAAGTTCTGACCTTTGACAATCCATTCAGGACGATGTCTACCA-T-GC-TGTGTTGTTTGGTAT--A-CTCCACGACA-GTGACG-AAGA-AGACGTAGTGTCCGTCTGTAGGGGCCGTGAAAATTCCAGTACTGGGA--TTGTATCCA--CCCCCGATGTTGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA---ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAAT
gi|4 : caTTTG-TTT-AAAAG-CTCAGTCAA----A--TAAG--GA-AACCGGAGAATGTGGTAATAGGACC-G---TCGG-CG-TAATAACCTGTTCCGGAGTACCTTTTTACCCAG--ACGGTTTGTCCCTTCTGAAGAGT--TAGCACCACCAAA-TTGGGGCCCGAATCG------TAAC--TTCC-AG----TATAGGCCATAGTTCTGACTTTCGTTAATCCATTTAACACAATGTCTA-CA-T-A--TATATTTTTTGTGTTAGAACTCTG-GACA-TTCACG-AAGA-ACACGTAGTTGCCGTTGGTAGGAGCAGTAAATATTCCGTTGCTAGGG--TTGTATCCGTTTCCCTG--GTTAGT-GATGAT-AAC-TGGAA-ACACCAAGGTGCTGCCGCTCCAGGAACTGTCAGCTG-ATGATACCGTGGCACTAAATGC-AAC---CCTTTTA---GGAATGTCT-ACAAATAAAGTTCTCATTAAATAA
gi|5 : cctcgatatagaagaaaagataaaaaggtacttgttattactcttgtatgataggttagctaatcatatatatagtacaaactataaaaaagaatatcaacgtgaaatactctcaattattattcataattggataAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAAATTCCAA----AAAAC-GTTTA--TTACG-TACCAA-CA-TAATTCTTTTTTTA-TGATTA-GTTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-CCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-AGCCGGAGAACGTTGTGATGGGAAC-GCTATTAC-TA-GCATAGCCTCTACCAGAGAAATGTCTGATCCAC--ACCGTGTTTCCCTGCTGAAGCCT--TAAGATAACCATG-TTTGCCCCCG-TCTG-----CCAAC--CTGC-AGCA-TCATCTCCTAAAGTTCTGACCTTTTACGATCCATTCAGGACAATGTCAA-CCTT-GC-TGTATTGTTTGGAAT--A-CTCCACAACA-GTGACG-AAGA-AGACATAGTGCCCGTCTGTAGGGACCGTGAAAATTCCTGTACTGGGA--TTGTATCCA--CTCCCGATGTTGTT-AATGAC-AAC-CGGAA-ACACTAATGTTCCGCTGTTCCAGGTACTACTCCTAG-ACGTCACACCCatcgtcaaatcgtttccttttc
gi|6 : TAA-TCAA--T--GAGAA-ACCCGGAGAATGTGGTAACAGGTCC-ACTGGCGG-----AGTAACCTTTTCCGGAATAATGCTTGACCCAC--ACCCTGTCTCCCTTCTGAAGAGT--TAGCACCGCTAAA-TTGGGGCCCGATTCGTAATACTCACTTCCGCCACCA-TTGTAGGCCATTGTTCTTACTTTTGTCGATCCATTCAACACAATGTCTA-CA-T-A--TATAGAATTTGAAACAAAACTCTGC-ACA-TTCACG-AAAA-ACACGTAGTTGCCGTTGGTAGGGGCGGTAAACATCCCGTTGCTAGGG--TTGTATCCGTTTCCCTG--GTTAGT-GATGAC-CGC-GGGAA-ACACCAAAGTGCCGCTGTTCCAGGAAATACTGGATG-ATGTCACGAAGGCAGTAAAGGC-CAC---CTTTT-----GGA---TC--ACGTCTG-------C---AAATAA-----ATATTGCAT
gi|7 : tcattcaatttgattaccctttacaaacaatatctttaaattatcCCGATGTTGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA---ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAATtaataa
gi|8 : TTA-TCTAAAATGTC---CTTAT-TTTA--TATGAGGA-ATCCAGAGAAGCTTGTTAATGGAGC-ACCGTATG-CA-TAATAACCTTTGCCGGCAAAATGaattcattataatgtataccatgaacaatccacgtaagcacttgtgaattcatggaatactgtacaatgaaaaggattattacgcctatattgtgaagttatgacatttacccaacatttatattgcagattaaagaaaaacgaacaaggaagctaacaatcaggaacttacaggcagaaacgtcaccagacacattcgcagattttttcccaatatcccatcaaagtgtccaaaccaaggcattgtaaagattgaaataaaatagataaggaggacaatgtttatcatattataaa
gi|8 : cACGAAGTGACCGTCGACAGGGGCTGTGAAGATTCCGGTGTTAGGG--TCGTATCC--TCCTCCTATATTGTA-CACGAC-ACG-TGGAA-ACACTAATGTACCGCTGTTCCAGGTGCTGCTAGAAG-ACGACACTCCCACAGTGAAGGC-AAC---CTTTTTGGTTAGA---TCTAAAAAA--AA------A--AAATAAGCTAAG-ATTGTTTATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaagtgaccgtcgacaggggctgtgaagattccggtgttagggtcgtatcctcctcctatattgtacacgacacgtggaaacactaatgtaccgctgttccaggtgctgctagaagacgacactcccacagtgaaggcaacctttttggttagatctaaaaaaaaaaaataagctaagattgtttatcaagtataccaagcaa
gi|9 : cttatctaaaatgtccttattttatatgaggaatccagagaagcttgttaatggagcaccgtatgcataataacctttgccggcaaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-ATACTAAAGTCCCGCTGTTCCAGTTGCCATTGGATG-ACGTTACACCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATTAA----TCA--AATTCAGC---TTATT-TATATA--C--CGCAAGTGGGAGGAG-GATTATATTCATAAAATcaagtataccaagcaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): CCTCTATAGAACAAATATGATAATAAATCTTAGGTTGATATACTGTTACTTATGTATCACATTTGTGTCCTATTATTATACCTTACAAGTGTAAAGATATGAAAATATCAATGTGAAAAGCTTTATGATTATTGGTCAATATATTGGATGATTTGTTGAAAATTCCGTTTCAAACTAAGGGAAAAGAGAATGTGTGATGGACCGTGGTATAACAGATCAGAGTAACTTTTAAGGGCCAGAGGTTTGCTCTTTGAGGCAGTTGACCAGCCAAGTGTTGGGACGAATGCCGTCACTAGCTAGCCAGAGTGTAAGTAGGGATGTTTTCATGTACTTTTGTTGATCCAGATTAATACAATATTTACTAGTATTGGGTAACGATAATGCCACTTTCTAAAAACCCAGCGTAGTTGCGTGGAGGGAGACGGGTAAAGTTTCACGATGCTATGGTTGTAAGCAGTTCCCTGGTTTAAGTGATGATGACGGGAAAACCAGTCGAGGTGGACTTCGCCATAGGGAAGATAGTCAGAGTGAGGAACGTGGCACTAAATGCAACAGTATATTAGCGAATAGTCTAAAATAGATACGTTATGGCTTAAATA
Alignments
lowQualScore : 1 1 11111 111 111 1111 1111 11 111 1 111 1 11111 22222222222 11 1111 2222 111111111 1 222 1 111 111111111 111 1
lowQualScore : 0 3 0 2 99999 444 22 4 6 111 6 5 333 7777 8888 11 1 8 8 8 8 8 8 44 444 0 0 444 8 8 8 1 3 88888 5 0 66 5 1 1 7 2 3 3 66666 222 99 99 11 3 1 8 0 1 77777777777 11 8 2222 11 8 4 5 1 5 77 3333 666666666 0 3 66 1 5 5 9999 33 44 1 66 1 5 1 66 222 5 888 0 4 999999 4 1 5 1 4 0 3 1 1 55 1 0 555 777 88 1 0 0 333333333 77 6 2 444 1 0
lowQualScore : . . . . ..... ... .. . . ... . . ... .... .... .. . . . . . . . .. ... . . ... . . . . . ..... . . .. . . . . . . . ..... ... .. .. .. . . . . . ........... .. . .... .. . . . . . .. .... ......... . . .. . . . .... .. .. . .. . . . .. ... . ... . . ...... . . . . . . . . . .. . . ... ... .. . . . ......... .. . . ... . .
lowQualScore : 0 2 0 5 33333 000 44 6 7 777 7 0 000 0000 4444 00 0 0 0 0 0 0 0 88 000 8 6 000 0 0 0 4 0 11111 0 5 99 0 0 7 6 0 4 4 88888 333 22 00 88 2 4 0 6 0 66666666666 00 0 4444 22 8 0 7 0 7 11 3333 000000000 4 7 77 0 7 7 8888 55 88 4 99 0 0 4 99 666 1 888 2 4 888888 0 0 3 1 0 7 2 6 1 66 7 7 666 888 11 1 4 1 888888888 11 4 8 222 0 0
consensus : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGCATATTGCATATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
Reference ( family-3569 ) : NNATATACA-TCAATTCA-TTGTGTCCTCATA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATNATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTGTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGACGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAANATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGCGTATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
gi|1 : TACAATCAAATCA-TAGTGTC----TA-AAGATTT---GAACTATGAAACACAAGGAAAA---TTTGTCATATTGTAAAAA-AAAAATTGCTAG----AAAG----TAA--TTAGA-TAC-AA-CAAGAATTTGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGT--TA-CTACTCCATTACATTACGAACT-CAATC-AGATCTTTATTTTGAATAG-TGG-GTTAATTTTAATTAAAAGGGCAACCGGAGAAAGTTGTGA-GGGAACTGTTTCGGCTATGAATAGCCTTTGCCACCTAGATGTCTGATCCACATACCGTGTCTCCTTGCTGAAGCTCATAGA--TAACATGTTTTGCTCCCG-TCTG-----GTAAG--CTGC-AGAACCTATATCCTA-AGTTCTGACCTTGGATAA-CCGT-TCAGGACAATGTCCA-CA-T-GCTTGTATTGTTTGTT--AT--ATCTCCACGACATGTGACGCAAGA-AG---ACGTAGTGCCCGTCTGTAGGGGGCG--TGAAAAATT-CAGTACTCGGGATTTGTATCCA--CCCCCGATGT---TGTTAAATGACGATCACGGAATATACTAAAGT-CCACTGTCC--GTTACACCTGTCTGAACGTCACCC---ACGTGAAGGCTTACGGTCTTCTTA---AGA---TC-AATG---GAA----TGA--AAATTAGCGTATCGTGTATA---ATCATAAGTGGGAAGGCAGATTATATGCCTAAAAT
gi|10 : aagATCCAT-TTAATACAATATCTA-CA-TAGA-TAAATTGGGTACC--AT--AACTCTGC-ACA-TTCACa
gi|11 : ATATACA-TTAATTCAATTGTGTCCT-----------------AATACAGAACACAAG-AATA---CTTGTCATAT-ATAAACACGAAAATCAAGAGGGAGAAAGG-GTTTA--TTAGA-TACCAA-CA-CAATTCGTATTA-A-TGATTA-ATGGTTATACAT---ATCTGAGTAATATATACT---TTAAATCACAAACT-CATTC-TA-TCTTTATTTTGAAAAG-C---GTTAA-TCTA--TAAAAGGA-AGCCGGAGAACGTTGTGACGGGAATGCTCTTGG-TAT-AATAGCCTCTGCCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctacccttttaggaatgtctacaaataaacgttgcattaaataaatcgtcaaatcattttcatttt
gi|12 : cATACACA-TCAAT-CA-TTGTATCCTCATGCAAGATTTTGCAACATAGGAAACACAA--AATAAGGC--GTCATAT-TTAAACACCAAAATTTGCAA----AA--G-ATTTAACTTAAGATACCAGTCA-TAATTCGTTTGT-ACTGATTATATG-TTATACAGGAAATCTGAGTAATA--TATT---TTTCATCACAAACTCCAATCTTG-TCTTTA-TTTTGAAAG-T---GTTAA-TTAT--TAAGAGGA-AACCGGAGAAatt
gi|13 : -AAGACAT---ACGT----TCCGGAAGTTGGAGCAA--TAAAGATTC-CGTCGTAAGCG--TTATATCCGTGCCCaacg
gi|14 : acattatggaccaggtaT-AATGAT-CAT-GGGAA-ACATTAAAGTGTCGTTGTTC---GTAGCAC-GGA-G------------GCAGTAAAG----ACCGCCTTTTTAGACAAA---TCT-ACAAATGAA----Ttttgtttaacg
gi|15 : tagCACTGTTCCAGGTACTACTGGATG-ACGTCACTCCCGCCGTGAAGGC-TACTGTCCTCTTA---AGA---TCT
gi|16 : GGGAACTGTTTCGG-TAT-GATAGCCTTTGCCACCAGCATGTCTGATCCAC--ACCGTGTC
gi|17 : agA-AAGATTT---GAGTTATGAAACAAAAG-AATA---ATTGTCATAT-ATA
gi|2 : ATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATATGCAACACAAG-AATA---CTTGTCATAT-ATAAACAAAAGAATTAAAAA----AAAAACGTTTA--TTACG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ATCCGGAGAACGTTGTGATGGGAACGCTATTAG-TAG-CATAGCCTTTGCCAGAGACATGTCTGATCCAC--ACCGTGTCGCCCTGTTGAAG-CCTCAAGACAGCCATG-TTTGCTCCCG-TCTG-----CCAAC--TTGC-AGCA-GTATCTCCTAAAGTTCTGACCTTTGACAATCCAT-TCAGGACGATGTCTACCA-T-GC-TGTGTTGTTTGGT--AT---ACTCCACGACA-GTGACG-AAGA-AG---ACGTAGTGTCCGTCTGTAGGGGCCG--TGAAAATTC-CAGTACTGGGA--TTGTATCCA--CCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGAATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAAT
gi|3 : caACTTTTGTTGATCCAGATTAATACAATATTTA-C--T-A---GTATTGGGTAACG-AT--AAT---GC--CA-CTTTCT-AAAA-ACCCAGCGTAGTTGC-GT-GGAGGGAGACGGGTAAAGTTTCACGATGCTATGG--TTGTAAGCAGTTCCCTGGTTTAAGTGAT-GATGAC-GG---GAAA-AC
gi|4 : cctctatagaacaaatatgataataaatcttaggttgatatactgttacttatgtatcacatttgtgtcctattattataccttacaagtgtaaagatatgaaaatatcaatgtgaaaagctttatgattattggtcaatatattggatgatttgttgaaaattccgtttcaaactaagggaaaagagaatgtgtgatggaccgtggtataacagatcagagtaacttttaagggccagaggtttgctctttgaggcagttgaccagccaagtgttgggacgaatgccgtcactagctagccagagtgtaagtagggatgttttcatgtTTTG-TTT-AAAAG-CTCAGTCAA----A--TAAG--GA-AACCGGAGAATGTGGTAATAGGA---CCGTCGG-CGT-AATAACCTGTTCCGGAGTACCTTTTTACCCAG--ACGGTTTGTCCCTTCTGAAG-AGTTAGCACCACCAAA-TTGGGGCCCGAATCG------TAAC--TTCC-AG----TATAGGCCATAGTTCTGACTTTCGTTAATCCAT-TTAACACAATGTCTA-CA-T-A--TATATTTTTTGTGTTAG--AACTCTG-GACA-TTCACG-AAGA-AC---ACGTAGTTGCCGTTGGTAGGAGCAG--TAAATATTC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAT-AAC-TGGAA-ACACCAAGGTGCTGCCGCTCCAGGAACTGTCAGCTG-ATGATACCGTGGCACTAAATGC-AAC---CCTTTTA---GGAATGTCT-ACAAATAAAGTTCTCATTAAATAAcagtcgaggtggacttcgccatagggaagatagtcagagtgaggaacgtggcactaaatgcaacagtatattagcgaatagtctaaaatagatacgttatggcttaaata
gi|5 : cctcgatatagaagaaaagataaaaaggtacttgttattactcttgtatgataggttagctaatcatatatatagtacaaactataaaaaagaatatcaacgtgaaatactctcaattattattcataattggataAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAAATTCCAA----AAAAC-GTTTA--TTACG-TACCAA-CA-TAATTCTTTTTTTA-TGATTA-GTTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-CCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-AGCCGGAGAACGTTGTGATGGGAACGCTATTAC-TAG-CATAGCCTCTACCAGAGAAATGTCTGATCCAC--ACCGTGTTTCCCTGCTGAAG-CCTTAAGATAACCATG-TTTGCCCCCG-TCTG-----CCAAC--CTGC-AGCA-TCATCTCCTAAAGTTCTGACCTTTTACGATCCAT-TCAGGACAATGTCAA-CCTT-GC-TGTATTGTTTGGA--AT---ACTCCACAACA-GTGACG-AAGA-AG---ACATAGTGCCCGTCTGTAGGGACCG--TGAAAATTC-CTGTACTGGGA--TTGTATCCA--CTCCCGATGT---TGTT-AATGAC-AAC-CGGAA-ACACTAATGTTCCGCTGTTCCAGGTACTACTCCTAG-ACGTCACACCCatcgtcaaatcgtttccttttc
gi|6 : TAA-TCAA--T--GAGAA-ACCCGGAGAATGTGGTAACAGGTCCACTGGCGG-----AGTAACCTTTTCCGGAATAATGCTTGACCCAC--ACCCTGTCTCCCTTCTGAAG-AGTTAGCACCGCTAAA-TTGGGGCCCGATTCGTAATACTCACTTCCGCCACCA-TTGTAGGCCATTGTTCTTACTTTTGTCGATCCAT-TCAACACAATGTCTA-CA-T-A--TATAGAATTTGAA--ACAAAACTCTGC-ACA-TTCACG-AAAA-AC---ACGTAGTTGCCGTTGGTAGGGGCGG--TAAACATCC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAC-CGC-GGGAA-ACACCAAAGTGCCGCTGTTCCAGGAAATACTGGATG-ATGTCACGAAGGCAGTAAAGGC-CAC---CTTTT-----GGA---TC--ACGTCTG-------C---AAATAA--ATATTGCAT
gi|7 : tcattcaatttgattaccctttacaaacaatatctttaaattatcCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGAATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAATtaataa
gi|8 : TTA-TCTAAAATGTC---CTTAT-TTTA--TATGAGGA-ATCCAGAGAAGCTTGTTAATGGAGCACCGTATG-CAT-AATAACCTTTGCCGGCAAAATGaattcattataatgtataccatgaacaatccacgtaagcacttgtgaattcatggaatactgtacaatgaaaaggattattacgcctatattgtgaagttatgacatttacccaacatttatattgcagattaaagaaaaacgaacaaggaagctaacaatcaggaacttacaggcagaaacgtcaccagacacattcgcagattttttcccaatatcccatcaaagtgtccaaaccaaggcattgtaaagattgaaataaaatagataaggaggacaatgtttatcatattataaa
gi|8 : c---ACGAAGTGACCGTCGACAGGGGCTG--TGAAGATTC-CGGTGTTAGGG--TCGTATCC--TCCTCCTATAT---TGTA-CACGAC-ACG-TGGAA-ACACTAATGTACCGCTGTTCCAGGTGCTGCTAGAAG-ACGACACTCCCACAGTGAAGGC-AAC---CTTTTTGGTTAGA---TCTAAAAAA--AA------A--AAATAAGCcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaagtgaccgtcgacaggggctgtgaagattccggtgttagggtcgtatcctcctcctatattgtacacgacacgtggaaacactaatgtaccgctgttccaggtgctgctagaagacgacactcccacagtgaaggcaacctttttggttagatctaaaaaaaaaaaataagctaagattgtttatcaagtataccaagcaa
gi|9 : cttatctaaaatgtccttattttatatgaggaatccagagaagcttgttaatggagcaccgtatgcataataacctttgccggcaaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-ATACTAAAGTCCCGCTGTTCCAGTTGCCATTGGATG-ACGTTACACCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATTAA----TCA--AATTCAGCTTATT-TATATAC----CGCAAGTGGGAGGAG-GATTATATTCATAAAATtaagattgtttatcaagtataccaagcaa
Alignments
lowQualScore : 1 1 11111 111 111 1111 1111 11 111 1 111 1 11111 22222222222 11 1111 2222 111111111 1 222 1 111 111111111 111 111 1
lowQualScore : 0 3 0 2 99999 444 22 4 6 111 6 5 333 7777 8888 11 1 8 8 8 8 8 8 3 444 0 0 444 8 8 8 1 3 88888 5 0 66 5 1 1 7 22 2 66666 222 99 99 11 3 1 8 0 1 77777777777 11 8 2222 11 8 1 5 1 5 77 3333 666666666 0 3 66 1 5 5 9999 33 44 1 66 2 5 1 66 222 5 888 0 4 999999 4 1 5 1 4 0 3 1 1 55 1 0 555 777 88 1 0 0 333333333 111 3 444 1 0
lowQualScore : . . . . ..... ... .. . . ... . . ... .... .... .. . . . . . . . . ... . . ... . . . . . ..... . . .. . . . . .. . ..... ... .. .. .. . . . . . ........... .. . .... .. . . . . . .. .... ......... . . .. . . . .... .. .. . .. . . . .. ... . ... . . ...... . . . . . . . . . .. . . ... ... .. . . . ......... ... . ... . .
lowQualScore : 0 2 0 5 11111 000 44 6 7 777 7 0 000 0000 4444 00 0 0 0 0 0 0 0 8 000 8 6 000 0 0 0 4 0 11111 0 5 99 0 0 7 6 88 8 88888 333 22 00 88 2 4 0 6 0 66666666666 00 0 4444 22 8 0 7 0 7 11 3333 000000000 4 7 77 0 7 7 8888 55 88 4 99 2 0 4 99 666 1 888 2 4 888888 0 0 3 1 0 7 2 6 1 66 7 7 666 888 11 1 4 1 888888888 777 7 222 0 0
consensus : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
Reference ( family-3569 ) : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCATATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
gi|1 : TACAATCAAATCA-TAGTGTC----TA-AAGATTT---GAACTATGAAACACAAGGAAAA---TTTGTCATATTGTAAAAA-AAAAATTGCTAG----AAAG----TAA--TTAGA-TAC-AA-CAAGAATTTGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGT--TA-CTACTCCATTACATTACGAACT-CAATC-AGATCTTTATTTTGAATAG-TGG-GTTAATTTTAATTAAAAGGGCAACCGGAGAAAGTTGTGA-GGGAACTGTTTCGGCTATGAATAGCCTTTGCCACCTAGATGTCTGATCCACATACCGTGTCTCCTTGCTGAAGCTCATAGA--TAACATGTTTTGCTCCCG-TCTG-----GTAAG--CTGC-AGAACCTATATCCTA-AGTTCTGACCTTGGATAA-CCGT-TCAGGACAATGTCCA-CA-T-GCTTGTATTGTTTGTT--AT--ATCTCCACGACATGTGACGCAAGA-AG---ACGTAGTGCCCGTCTGTAGGGGGCG--TGAAAAATT-CAGTACTCGGGATTTGTATCCA--CCCCCGATGT---TGTTAAATGACGATCACGGAATATACTAAAGT-CCACTGTCC--GTTACACCTGTCTGAACGTCACCC---ACGTGAAGGCTTACGGTCTTCTTA---AGA---TC-AATG---GAA----TGA--AAATTAGC--GTATCGTGTATA---ATCATAAGTGGGAAGGCAGATTATATGCCTAAAAT
gi|10 : aagATCCAT-TTAATACAATATCTA-CA-TAGA-TAAATTGGGTACC--AT--AACTCTGC-ACA-TTCACa
gi|11 : ATATACA-TTAATTCAATTGTGTCCT-----------------AATACAGAACACAAG-AATA---CTTGTCATAT-ATAAACACGAAAATCAAGAGGGAGAAAGG-GTTTA--TTAGA-TACCAA-CA-CAATTCGTATTA-A-TGATTA-ATGGTTATACAT---ATCTGAGTAATATATACT---TTAAATCACAAACT-CATTC-TA-TCTTTATTTTGAAAAG-C---GTTAA-TCTA--TAAAAGGA-AGCCGGAGAACGTTGTGACGGGAATGCTCTTGG-TAT-AATAGCCTCTGCCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctacccttttaggaatgtctacaaataaacgttgcattaaataaatcgtcaaatcattttcatttt
gi|12 : cATACACA-TCAAT-CA-TTGTATCCTCATGCAAGATTTTGCAACATAGGAAACACAA--AATAAGGC--GTCATAT-TTAAACACCAAAATTTGCAA----AA--G-ATTTAACTTAAGATACCAGTCA-TAATTCGTTTGT-ACTGATTATATG-TTATACAGGAAATCTGAGTAATA--TATT---TTTCATCACAAACTCCAATCTTG-TCTTTA-TTTTGAAAG-T---GTTAA-TTAT--TAAGAGGA-AACCGGAGAAatt
gi|13 : -AAGACAT---ACGT----TCCGGAAGTTGGAGCAA--TAAAGATTC-CGTCGTAAGCG--TTATATCCGTGCCCaacg
gi|14 : acattatggaccaggtaT-AATGAT-CAT-GGGAA-ACATTAAAGTGTCGTTGTTC---GTAGCAC-GGA-G------------GCAGTAAAG----ACCGCCTTTTTAGACAAA---TCT-ACAAATGAA----Ttttgtttaacg
gi|15 : tagCACTGTTCCAGGTACTACTGGATG-ACGTCACTCCCGCCGTGAAGGC-TACTGTCCTCTTA---AGA---TCT
gi|16 : GGGAACTGTTTCGG-TAT-GATAGCCTTTGCCACCAGCATGTCTGATCCAC--ACCGTGTC
gi|17 : agA-AAGATTT---GAGTTATGAAACAAAAG-AATA---ATTGTCATAT-ATA
gi|2 : ATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATATGCAACACAAG-AATA---CTTGTCATAT-ATAAACAAAAGAATTAAAAA----AAAAACGTTTA--TTACG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ATCCGGAGAACGTTGTGATGGGAACGCTATTAG-TAG-CATAGCCTTTGCCAGAGACATGTCTGATCCAC--ACCGTGTCGCCCTGTTGAAG-CCTCAAGACAGCCATG-TTTGCTCCCG-TCTG-----CCAAC--TTGC-AGCA-GTATCTCCTAAAGTTCTGACCTTTGACAATCCAT-TCAGGACGATGTCTACCA-T-GC-TGTGTTGTTTGGT--AT---ACTCCACGACA-GTGACG-AAGA-AG---ACGTAGTGTCCGTCTGTAGGGGCCG--TGAAAATTC-CAGTACTGGGA--TTGTATCCA--CCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA--ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAAT
gi|3 : caACTTTTGTTGATCCAGATTAATACAATATTTA-C--T-A---GTATTGGGTAACG-AT--AAT---GC--CA-CTTTCT-AAAA-ACCCAGCGTAGTTGC-GT-GGAGGGAGACGGGTAAAGTTTCACGATGCTATGG--TTGTAAGCAGTTCCCTGGTTTAAGTGAT-GATGAC-GG---GAAA-AC
gi|4 : cctctatagaacaaatatgataataaatcttaggttgatatactgttacttatgtatcacatttgtgtcctattattataccttacaagtgtaaagatatgaaaatatcaatgtgaaaagctttatgattattggtcaatatattggatgatttgttgaaaattccgtttcaaactaagggaaaagagaatgtgtgatggaccgtggtataacagatcagagtaacttttaagggccagaggtttgctctttgaggcagttgaccagccaagtgttgggacgaatgccgtcactagctagccagagtgtaagtagggatgttttcatgtTTTG-TTT-AAAAG-CTCAGTCAA----A--TAAG--GA-AACCGGAGAATGTGGTAATAGGACCG---TCGG-CGT-AATAACCTGTTCCGGAGTACCTTTTTACCCAG--ACGGTTTGTCCCTTCTGAAG-AGTTAGCACCACCAAA-TTGGGGCCCGAATCG------TAAC--TTCC-AG----TATAGGCCATAGTTCTGACTTTCGTTAATCCAT-TTAACACAATGTCTA-CA-T-A--TATATTTTTTGTGTTAG--AACTCTG-GACA-TTCACG-AAGA-AC---ACGTAGTTGCCGTTGGTAGGAGCAG--TAAATATTC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAT-AAC-TGGAA-ACACCAAGGTGCTGCCGCTCCAGGAACTGTCAGCTG-ATGATACCGTGGCACTAAATGC-AAC---CCTTTTA---GGAATGTCT-ACAAATAAAGTTCTCATTAAATAAcagtcgaggtggacttcgccatagggaagatagtcagagtgaggaacgtggcactaaatgcaacagtatattagcgaatagtctaaaatagatacgttatggcttaaata
gi|5 : cctcgatatagaagaaaagataaaaaggtacttgttattactcttgtatgataggttagctaatcatatatatagtacaaactataaaaaagaatatcaacgtgaaatactctcaattattattcataattggataAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAAATTCCAA----AAAAC-GTTTA--TTACG-TACCAA-CA-TAATTCTTTTTTTA-TGATTA-GTTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-CCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-AGCCGGAGAACGTTGTGATGGGAACGCTATTAC-TAG-CATAGCCTCTACCAGAGAAATGTCTGATCCAC--ACCGTGTTTCCCTGCTGAAG-CCTTAAGATAACCATG-TTTGCCCCCG-TCTG-----CCAAC--CTGC-AGCA-TCATCTCCTAAAGTTCTGACCTTTTACGATCCAT-TCAGGACAATGTCAA-CCTT-GC-TGTATTGTTTGGA--AT---ACTCCACAACA-GTGACG-AAGA-AG---ACATAGTGCCCGTCTGTAGGGACCG--TGAAAATTC-CTGTACTGGGA--TTGTATCCA--CTCCCGATGT---TGTT-AATGAC-AAC-CGGAA-ACACTAATGTTCCGCTGTTCCAGGTACTACTCCTAG-ACGTCACACCCatcgtcaaatcgtttccttttc
gi|6 : TAA-TCAA--T--GAGAA-ACCCGGAGAATGTGGTAACAGGTCCACTGGCGG-----AGTAACCTTTTCCGGAATAATGCTTGACCCAC--ACCCTGTCTCCCTTCTGAAG-AGTTAGCACCGCTAAA-TTGGGGCCCGATTCGTAATACTCACTTCCGCCACCA-TTGTAGGCCATTGTTCTTACTTTTGTCGATCCAT-TCAACACAATGTCTA-CA-T-A--TATAGAATTTGAA--ACAAAACTCTGC-ACA-TTCACG-AAAA-AC---ACGTAGTTGCCGTTGGTAGGGGCGG--TAAACATCC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAC-CGC-GGGAA-ACACCAAAGTGCCGCTGTTCCAGGAAATACTGGATG-ATGTCACGAAGGCAGTAAAGGC-CAC---CTTTT-----GGA---TC--ACGTCTG-------C---AAATAA----ATATTGCAT
gi|7 : tcattcaatttgattaccctttacaaacaatatctttaaattatcCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA--ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAATtaataa
gi|8 : TTA-TCTAAAATGTC---CTTAT-TTTA--TATGAGGA-ATCCAGAGAAGCTTGTTAATGGAGCACCGTATG-CAT-AATAACCTTTGCCGGCAAAATGaattcattataatgtataccatgaacaatccacgtaagcacttgtgaattcatggaatactgtacaatgaaaaggattattacgcctatattgtgaagttatgacatttacccaacatttatattgcagattaaagaaaaacgaacaaggaagctaacaatcaggaacttacaggcagaaacgtcaccagacacattcgcagattttttcccaatatcccatcaaagtgtccaaaccaaggcattgtaaagattgaaataaaatagataaggaggacaatgtttatcatattataaa
gi|8 : c---ACGAAGTGACCGTCGACAGGGGCTG--TGAAGATTC-CGGTGTTAGGG--TCGTATCC--TCCTCCTATAT---TGTA-CACGAC-ACG-TGGAA-ACACTAATGTACCGCTGTTCCAGGTGCTGCTAGAAG-ACGACACTCCCACAGTGAAGGC-AAC---CTTTTTGGTTAGA---TCTAAAAAA--AA------A--AAATAAGCTAAGATTGTTTATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaagtgaccgtcgacaggggctgtgaagattccggtgttagggtcgtatcctcctcctatattgtacacgacacgtggaaacactaatgtaccgctgttccaggtgctgctagaagacgacactcccacagtgaaggcaacctttttggttagatctaaaaaaaaaaaataagctaagattgtttatcaagtataccaagcaa
gi|9 : cttatctaaaatgtccttattttatatgaggaatccagagaagcttgttaatggagcaccgtatgcataataacctttgccggcaaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-ATACTAAAGTCCCGCTGTTCCAGTTGCCATTGGATG-ACGTTACACCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATTAA----TCA--AATTCAGC--TTATT-TATATAC----CGCAAGTGGGAGGAG-GATTATATTCATAAAATcaagtataccaagcaa
Alignments
lowQualScore : 1 1 11111 111 111 1111 1111 11 111 1 111 1 11111 22222222222 11 1111 2222 111111111 1 222 1 111 111111111 111 111 1
lowQualScore : 0 3 0 2 99999 444 22 4 6 111 6 5 333 7777 8888 11 1 8 8 8 8 8 8 3 444 0 0 444 8 8 8 1 3 88888 5 0 66 5 1 1 7 22 2 66666 222 99 99 11 3 1 8 0 1 77777777777 11 8 2222 11 8 1 5 1 5 77 3333 666666666 0 3 66 1 5 5 9999 33 44 1 66 2 5 1 66 222 5 888 0 4 999999 4 1 5 1 4 0 3 1 1 55 1 0 555 777 88 1 0 0 333333333 111 666 444 1 0
lowQualScore : . . . . ..... ... .. . . ... . . ... .... .... .. . . . . . . . . ... . . ... . . . . . ..... . . .. . . . . .. . ..... ... .. .. .. . . . . . ........... .. . .... .. . . . . . .. .... ......... . . .. . . . .... .. .. . .. . . . .. ... . ... . . ...... . . . . . . . . . .. . . ... ... .. . . . ......... ... ... ... . .
lowQualScore : 0 2 0 5 11111 000 44 6 7 777 7 0 000 0000 4444 00 0 0 0 0 0 0 0 8 000 8 6 000 0 0 0 4 0 11111 0 5 99 0 0 7 6 88 8 88888 333 22 00 88 2 4 0 6 0 66666666666 00 0 4444 22 8 0 7 0 7 11 3333 000000000 4 7 77 0 7 7 8888 55 88 4 99 2 0 4 99 666 1 888 2 4 888888 0 0 3 1 0 7 2 6 1 66 7 7 666 888 11 1 4 1 888888888 777 555 222 0 0
consensus : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
Reference ( family-3569 ) : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
gi|1 : TACAATCAAATCA-TAGTGTC----TA-AAGATTT---GAACTATGAAACACAAGGAAAA---TTTGTCATATTGTAAAAA-AAAAATTGCTAG----AAAG----TAA--TTAGA-TAC-AA-CAAGAATTTGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGT--TA-CTACTCCATTACATTACGAACT-CAATC-AGATCTTTATTTTGAATAG-TGG-GTTAATTTTAATTAAAAGGGCAACCGGAGAAAGTTGTGA-GGGAACTGTTTCGGCTATGAATAGCCTTTGCCACCTAGATGTCTGATCCACATACCGTGTCTCCTTGCTGAAGCTCATAGA--TAACATGTTTTGCTCCCG-TCTG-----GTAAG--CTGC-AGAACCTATATCCTA-AGTTCTGACCTTGGATAA-CCGT-TCAGGACAATGTCCA-CA-T-GCTTGTATTGTTTGTT--AT--ATCTCCACGACATGTGACGCAAGA-AG---ACGTAGTGCCCGTCTGTAGGGGGCG--TGAAAAATT-CAGTACTCGGGATTTGTATCCA--CCCCCGATGT---TGTTAAATGACGATCACGGAATATACTAAAGT-CCACTGTCC--GTTACACCTGTCTGAACGTCACCC---ACGTGAAGGCTTACGGTCTTCTTA---AGA---TC-AATG---GAA----TGA--AAATTAGC--GTATCGTGTATA---ATCATAAGTGGGAAGGCAGATTATATGCCTAAAAT
gi|10 : aagATCCAT-TTAATACAATATCTA-CA-TAGA-TAAATTGGGTACC--AT--AACTCTGC-ACA-TTCACa
gi|11 : ATATACA-TTAATTCAATTGTGTCCT-----------------AATACAGAACACAAG-AATA---CTTGTCATAT-ATAAACACGAAAATCAAGAGGGAGAAAGG-GTTTA--TTAGA-TACCAA-CA-CAATTCGTATTA-A-TGATTA-ATGGTTATACAT---ATCTGAGTAATATATACT---TTAAATCACAAACT-CATTC-TA-TCTTTATTTTGAAAAG-C---GTTAA-TCTA--TAAAAGGA-AGCCGGAGAACGTTGTGACGGGAATGCTCTTGG-TAT-AATAGCCTCTGCCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctacccttttaggaatgtctacaaataaacgttgcattaaataaatcgtcaaatcattttcatttt
gi|12 : cATACACA-TCAAT-CA-TTGTATCCTCATGCAAGATTTTGCAACATAGGAAACACAA--AATAAGGC--GTCATAT-TTAAACACCAAAATTTGCAA----AA--G-ATTTAACTTAAGATACCAGTCA-TAATTCGTTTGT-ACTGATTATATG-TTATACAGGAAATCTGAGTAATA--TATT---TTTCATCACAAACTCCAATCTTG-TCTTTA-TTTTGAAAG-T---GTTAA-TTAT--TAAGAGGA-AACCGGAGAAatt
gi|13 : -AAGACAT---ACGT----TCCGGAAGTTGGAGCAA--TAAAGATTC-CGTCGTAAGCG--TTATATCCGTGCCCaacg
gi|14 : acattatggaccaggtaT-AATGAT-CAT-GGGAA-ACATTAAAGTGTCGTTGTTC---GTAGCAC-GGA-G------------GCAGTAAAG----ACCGCCTTTTTAGACAAA---TCT-ACAAATGAA----Ttttgtttaacg
gi|15 : tagCACTGTTCCAGGTACTACTGGATG-ACGTCACTCCCGCCGTGAAGGC-TACTGTCCTCTTA---AGA---TCT
gi|16 : GGGAACTGTTTCGG-TAT-GATAGCCTTTGCCACCAGCATGTCTGATCCAC--ACCGTGTC
gi|17 : agA-AAGATTT---GAGTTATGAAACAAAAG-AATA---ATTGTCATAT-ATA
gi|2 : ATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATATGCAACACAAG-AATA---CTTGTCATAT-ATAAACAAAAGAATTAAAAA----AAAAACGTTTA--TTACG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ATCCGGAGAACGTTGTGATGGGAACGCTATTAG-TAG-CATAGCCTTTGCCAGAGACATGTCTGATCCAC--ACCGTGTCGCCCTGTTGAAG-CCTCAAGACAGCCATG-TTTGCTCCCG-TCTG-----CCAAC--TTGC-AGCA-GTATCTCCTAAAGTTCTGACCTTTGACAATCCAT-TCAGGACGATGTCTACCA-T-GC-TGTGTTGTTTGGT--AT---ACTCCACGACA-GTGACG-AAGA-AG---ACGTAGTGTCCGTCTGTAGGGGCCG--TGAAAATTC-CAGTACTGGGA--TTGTATCCA--CCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA--ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAAT
gi|3 : caACTTTTGTTGATCCAGATTAATACAATATTTA-C--T-A---GTATTGGGTAACG-AT--AAT---GC--CA-CTTTCT-AAAA-ACCCAGCGTAGTTGC-GT-GGAGGGAGACGGGTAAAGTTTCACGATGCTATGG--TTGTAAGCAGTTCCCTGGTTTAAGTGAT-GATGAC-GG---GAAA-AC
gi|4 : cctctatagaacaaatatgataataaatcttaggttgatatactgttacttatgtatcacatttgtgtcctattattataccttacaagtgtaaagatatgaaaatatcaatgtgaaaagctttatgattattggtcaatatattggatgatttgttgaaaattccgtttcaaactaagggaaaagagaatgtgtgatggaccgtggtataacagatcagagtaacttttaagggccagaggtttgctctttgaggcagttgaccagccaagtgttgggacgaatgccgtcactagctagccagagtgtaagtagggatgttttcatgtTTTG-TTT-AAAAG-CTCAGTCAA----A--TAAG--GA-AACCGGAGAATGTGGTAATAGGACCG---TCGG-CGT-AATAACCTGTTCCGGAGTACCTTTTTACCCAG--ACGGTTTGTCCCTTCTGAAG-AGTTAGCACCACCAAA-TTGGGGCCCGAATCG------TAAC--TTCC-AG----TATAGGCCATAGTTCTGACTTTCGTTAATCCAT-TTAACACAATGTCTA-CA-T-A--TATATTTTTTGTGTTAG--AACTCTG-GACA-TTCACG-AAGA-AC---ACGTAGTTGCCGTTGGTAGGAGCAG--TAAATATTC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAT-AAC-TGGAA-ACACCAAGGTGCTGCCGCTCCAGGAACTGTCAGCTG-ATGATACCGTGGCACTAAATGC-AAC---CCTTTTA---GGAATGTCT-ACAAATAAAGTTCTCATTAAATAAcagtcgaggtggacttcgccatagggaagatagtcagagtgaggaacgtggcactaaatgcaacagtatattagcgaatagtctaaaatagatacgttatggcttaaata
gi|5 : cctcgatatagaagaaaagataaaaaggtacttgttattactcttgtatgataggttagctaatcatatatatagtacaaactataaaaaagaatatcaacgtgaaatactctcaattattattcataattggataAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAAATTCCAA----AAAAC-GTTTA--TTACG-TACCAA-CA-TAATTCTTTTTTTA-TGATTA-GTTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-CCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-AGCCGGAGAACGTTGTGATGGGAACGCTATTAC-TAG-CATAGCCTCTACCAGAGAAATGTCTGATCCAC--ACCGTGTTTCCCTGCTGAAG-CCTTAAGATAACCATG-TTTGCCCCCG-TCTG-----CCAAC--CTGC-AGCA-TCATCTCCTAAAGTTCTGACCTTTTACGATCCAT-TCAGGACAATGTCAA-CCTT-GC-TGTATTGTTTGGA--AT---ACTCCACAACA-GTGACG-AAGA-AG---ACATAGTGCCCGTCTGTAGGGACCG--TGAAAATTC-CTGTACTGGGA--TTGTATCCA--CTCCCGATGT---TGTT-AATGAC-AAC-CGGAA-ACACTAATGTTCCGCTGTTCCAGGTACTACTCCTAG-ACGTCACACCCatcgtcaaatcgtttccttttc
gi|6 : TAA-TCAA--T--GAGAA-ACCCGGAGAATGTGGTAACAGGTCCACTGGCGG-----AGTAACCTTTTCCGGAATAATGCTTGACCCAC--ACCCTGTCTCCCTTCTGAAG-AGTTAGCACCGCTAAA-TTGGGGCCCGATTCGTAATACTCACTTCCGCCACCA-TTGTAGGCCATTGTTCTTACTTTTGTCGATCCAT-TCAACACAATGTCTA-CA-T-A--TATAGAATTTGAA--ACAAAACTCTGC-ACA-TTCACG-AAAA-AC---ACGTAGTTGCCGTTGGTAGGGGCGG--TAAACATCC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAC-CGC-GGGAA-ACACCAAAGTGCCGCTGTTCCAGGAAATACTGGATG-ATGTCACGAAGGCAGTAAAGGC-CAC---CTTTT-----GGA---TC--ACGTCTG-------C---AAATAA----ATATTGCAT
gi|7 : tcattcaatttgattaccctttacaaacaatatctttaaattatcCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA--ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAATtaataa
gi|8 : TTA-TCTAAAATGTC---CTTAT-TTTA--TATGAGGA-ATCCAGAGAAGCTTGTTAATGGAGCACCGTATG-CAT-AATAACCTTTGCCGGCAAAATGaattcattataatgtataccatgaacaatccacgtaagcacttgtgaattcatggaatactgtacaatgaaaaggattattacgcctatattgtgaagttatgacatttacccaacatttatattgcagattaaagaaaaacgaacaaggaagctaacaatcaggaacttacaggcagaaacgtcaccagacacattcgcagattttttcccaatatcccatcaaagtgtccaaaccaaggcattgtaaagattgaaataaaatagataaggaggacaatgtttatcatattataaa
gi|8 : c---ACGAAGTGACCGTCGACAGGGGCTG--TGAAGATTC-CGGTGTTAGGG--TCGTATCC--TCCTCCTATAT---TGTA-CACGAC-ACG-TGGAA-ACACTAATGTACCGCTGTTCCAGGTGCTGCTAGAAG-ACGACACTCCCACAGTGAAGGC-AAC---CTTTTTGGTTAGA---TCTAAAAAA--AA------A--AAATAAGCTAAGATTGTTTATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaagtgaccgtcgacaggggctgtgaagattccggtgttagggtcgtatcctcctcctatattgtacacgacacgtggaaacactaatgtaccgctgttccaggtgctgctagaagacgacactcccacagtgaaggcaacctttttggttagatctaaaaaaaaaaaataagctaagattgtttatcaagtataccaagcaa
gi|9 : cttatctaaaatgtccttattttatatgaggaatccagagaagcttgttaatggagcaccgtatgcataataacctttgccggcaaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-ATACTAAAGTCCCGCTGTTCCAGTTGCCATTGGATG-ACGTTACACCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATTAA----TCA--AATTCAGC--TTATT-TATATAC----CGCAAGTGGGAGGAG-GATTATATTCATAAAATcaagtataccaagcaa
blockSeqs : . T A C CATGC TGC AA C . AGG . C AAG GGAG AAAC AC G A T . T C T G GAA T . C T . T G CTCA . . . G C C GC C TAT CAG . C GA A T . T ATTCGTAATAC TT C CAG CT A A A T C CT AGA TGTTAGA G T C . C CCCA GT AA A GG G A T . GTG A AAG . CATG . A G T . T C A T C GAC ATG TA C GTTCTCATT CTA ACA CTC T .
blockSeqs : . T . C CGTA . CA G . . . C TGC . AGG . A . . . . . . A . T . . . . . T TC . . . A C T TG T TAT AGA . A CA C A . G TCTGC . . CAT AG T T . G . A GC AAACAAA G G G . . T TG CT C . A . G . AGT G . . AGCC . C C T . C C C T T GTT . TA T TCA A GCA CTC T .
blockSeqs : . . . C . . GT T . . . A AAA . AAC . C . . . . . . A . T . . . . . G C . . . T T T GC A TAG AGT . C GA A T . C AATCG . . CAT CT A T . T . A GC ACGATA A C T . . G TG TG C . G . A . GTT A . . AACT . G G T . C T C A T . . TA C TCA A ACA C A .
blockSeqs : . GA T . . . C TCC . G . C . . . . . . . . . . . . . . G T . . . A C T GC A CGT AGA . A CA C A . G TCTGC . . . AG T A . C . A A CCATA . T C . . C GC CT A . T . T . GTT A . . AACC . T T A . A C A C T . . TA C TCA C GTT
blockSeqs : . . . . A C . . . G T C AC G TAG AAT . T . G . A A GTAT . G G . . G TG TG C . A . G . A A . . CGCG . A G T . G A A T T . . T T C . TA
blockSeqs : . . C . . . C G A AC G CAT CAA . C . . A GAAT . T C . . C GA CG G . C . T . A . . . AGCC . C C T . C C C A . . . T A A
blockSeqs : . . . T G . . T G T . G . G . T . . . ACGT . T A A . T C A T . . . . T
blockSeqs : . GG . A C T . A C C . . . .
blockSeqs : . . . . .
blockSeqCons : AG** *** C**** ** TAT** ** N* NA CAT* AC** NNATA**** T* ** GTT AGCC** T* TA
originalCons : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAGG-GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-T-GC-TGTATTGTTTGNN--AT--AACTCCGCGACA-NTNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
finalCons : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAATTNNNAA----AAAG--GTTTA--TTANG-TACCAA-CA-TAATTCGTTTTT-A-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAGC----GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGGTAT--AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAGN-CTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCAT-TATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-TAC--TGTATTGTTTGNNATA----ACTCCGCGACAT-TNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGACAGCC--GGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGCT-ACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
Alignments
lowQualScore : 1 1 11111 111 111 22222 11111 11 111 1 111 1 11111 22222222222 11 1111 222 111111111 1 222 1 111 111111111 111 111 1
lowQualScore : 0 3 0 2 99999 444 22 4 6 111 6 5 8 333 00000 66666 11 1 8 8 8 8 8 8 3 444 0 0 444 8 8 8 1 3 88888 5 0 66 5 1 1 7 22 2 66666 222 99 99 11 3 1 8 0 1 77777777777 11 8 2222 11 8 1 5 1 5 77 666 666666666 3 5 1 5 5 9999 33 44 1 66 2 5 1 66 222 5 888 0 4 999999 4 1 5 1 4 0 3 1 1 55 1 0 555 777 88 1 0 0 333333333 111 666 444 1 0
lowQualScore : . . . . ..... ... .. . . ... . . . ... ..... ..... .. . . . . . . . . ... . . ... . . . . . ..... . . .. . . . . .. . ..... ... .. .. .. . . . . . ........... .. . .... .. . . . . . .. ... ......... . . . . . .... .. .. . .. . . . .. ... . ... . . ...... . . . . . . . . . .. . . ... ... .. . . . ......... ... ... ... . .
lowQualScore : 0 2 0 5 11111 000 44 6 7 777 7 0 0 000 00000 22222 00 0 0 0 0 0 0 0 8 000 8 6 000 0 0 0 4 0 11111 0 5 99 0 0 7 6 88 8 88888 333 22 00 88 2 4 0 6 0 66666666666 00 0 4444 22 8 0 7 0 7 11 444 000000000 7 7 0 7 7 8888 55 88 4 99 2 0 4 99 666 1 888 2 4 888888 0 0 3 1 0 7 2 6 1 66 7 7 666 888 11 1 4 1 888888888 777 555 222 0 0
consensus : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAA-TTNNNA-----AAAAG--GTTTA--TTANG-TACCAA-CA-TAATTCGTTTT-TA-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-TG-C-TGTATTGTTTGNN--AT--AACTCCGCGACAT-TNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
Reference ( family-3569 ) : NNATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATACGAAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAA-TTNNNA-----AAAAG--GTTTA--TTANG-TACCAA-CA-TAATTCGTTTT-TA-TGATTA-ATGATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ANCCGGAGAACGTTGTGACGGGAACGCTNTCGG-TAT-AATAGCCTTTGCCGGAGAAATGTCTGATCCAC--ACCGTGTCTCCCTGCTGAAG-NCTTAGNACCGCCATG-TTTGCNCCCGATCCG-----CTAAC--CTGC-AGCA-TTATATCCTANAGTTCTGACCTTTGNCGATCCAT-TCAGNACAATGTCTA-CA-TA-C-TGTATTGTTTGNN--AT--AACTCCGCGACAT-TNACG-AAGA-AN---ACGTAGTGNCCGTCGGTAGGGGCCG--TGAAGATTC-CGGTGCTAGGG--TTGTATCCGTTCCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ACACTAANGTNCCGCTGTTCCAGGTACTACTGGATG-ACGTCACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAACGAATGAA----TCA--AAATAAGC--ATATTGCGTATGCTCATCGTNAGTGGGAGGGC-GGCTATATGCACGAAAT
gi|1 : TACAATCAAATCA-TAGTGTC----TA-AAGATTT---GAACTATGAAACACAAGGAAAA---TTTGTCATATTGTAAAAA-AAAAA-TTGCTA-----GAAAG----TAA--TTAGA-TAC-AA-CAAGAATTTGTTTT-TA-TGATTA-ATGATTATACAT---ATCTGAGT--TA-CTACTCCATTACATTACGAACT-CAATC-AGATCTTTATTTTGAATAG-TGG-GTTAATTTTAATTAAAAGGGCAACCGGAGAAAGTTGTGA-GGGAACTGTTTCGGCTATGAATAGCCTTTGCCACCTAGATGTCTGATCCACATACCGTGTCTCCTTGCTGAAGCTCATAGA--TAACATGTTTTGCTCCCG-TCTG-----GTAAG--CTGC-AGAACCTATATCCTA-AGTTCTGACCTTGGATAA-CCGT-TCAGGACAATGTCCA-CA-TG-CTTGTATTGTTTGTT--AT--ATCTCCACGACATGTGACGCAAGA-AG---ACGTAGTGCCCGTCTGTAGGGGGCG--TGAAAAATT-CAGTACTCGGGATTTGTATCCA--CCCCCGATGT---TGTTAAATGACGATCACGGAATATACTAAAGT-CCACTGTCC--GTTACACCTGTCTGAACGTCACCC---ACGTGAAGGCTTACGGTCTTCTTA---AGA---TC-AATG---GAA----TGA--AAATTAGC--GTATCGTGTATA---ATCATAAGTGGGAAGGCAGATTATATGCCTAAAAT
gi|10 : aagATCCAT-TTAATACAATATCTA-CA-TAGA-TAAATTGGGTACC--AT--AACTCTGC-ACAT-TCACa
gi|11 : ATATACA-TTAATTCAATTGTGTCCT-----------------AATACAGAACACAAG-AATA---CTTGTCATAT-ATAAACACGAAAA-TCAAGAGGGAGAAAGG--GTTTA--TTAGA-TACCAA-CA-CAATTCGTATT-AA-TGATTA-ATGGTTATACAT---ATCTGAGTAATATATACT---TTAAATCACAAACT-CATTC-TA-TCTTTATTTTGAAAAG-C---GTTAA-TCTA--TAAAAGGA-AGCCGGAGAACGTTGTGACGGGAATGCTCTTGG-TAT-AATAGCCTCTGCCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgctacccttttaggaatgtctacaaataaacgttgcattaaataaatcgtcaaatcattttcatttt
gi|12 : cATACACA-TCAAT-CA-TTGTATCCTCATGCAAGATTTTGCAACATAGGAAACACAA--AATAAGGC--GTCATAT-TTAAACACCAAAA-TTTGCA-----AAA-G--ATTTAACTTAAGATACCAGTCA-TAATTCGTTTG-TACTGATTATATG-TTATACAGGAAATCTGAGTAATA--TATT---TTTCATCACAAACTCCAATCTTG-TCTTTA-TTTTGAAAG-T---GTTAA-TTAT--TAAGAGGA-AACCGGAGAAatt
gi|13 : -AAGACAT---ACGT----TCCGGAAGTTGGAGCAA--TAAAGATTC-CGTCGTAAGCG--TTATATCCGTGCCCaacg
gi|14 : acattatggaccaggtaT-AATGAT-CAT-GGGAA-ACATTAAAGTGTCGTTGTTC---GTAGCAC-GGA-G------------GCAGTAAAG----ACCGCCTTTTTAGACAAA---TCT-ACAAATGAA----Ttttgtttaacg
gi|15 : tagCACTGTTCCAGGTACTACTGGATG-ACGTCACTCCCGCCGTGAAGGC-TACTGTCCTCTTA---AGA---TCT
gi|16 : GGGAACTGTTTCGG-TAT-GATAGCCTTTGCCACCAGCATGTCTGATCCAC--ACCGTGTC
gi|17 : agA-AAGATTT---GAGTTATGAAACAAAAG-AATA---ATTGTCATAT-ATA
gi|2 : ATATACA-TCAATTCA-TTGTGTCCTCGTA-AAGATTT---GAGATATGCAACACAAG-AATA---CTTGTCATAT-ATAAACAAAAGAA-TTAAAA-----AAAAAACGTTTA--TTACG-TACCAA-CA-TAATTCGTTTT-TA-TGATTA-ATTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-TCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-ATCCGGAGAACGTTGTGATGGGAACGCTATTAG-TAG-CATAGCCTTTGCCAGAGACATGTCTGATCCAC--ACCGTGTCGCCCTGTTGAAG-CCTCAAGACAGCCATG-TTTGCTCCCG-TCTG-----CCAAC--TTGC-AGCA-GTATCTCCTAAAGTTCTGACCTTTGACAATCCAT-TCAGGACGATGTCTACCA-TG-C-TGTGTTGTTTGGT--AT---ACTCCACGACAG-TGACG-AAGA-AG---ACGTAGTGTCCGTCTGTAGGGGCCG--TGAAAATTC-CAGTACTGGGA--TTGTATCCA--CCCCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA--ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAAT
gi|3 : caACTTTTGTTGATCCAGATTAATACAATATTTA-C--TA----GTATTGGGTAACG-AT--AATGCCAC----T-TT-CT-AAAA-ACCCAGCGTAGTTGC-GT-GGAGGGAGACGGGTAAAGTTTCACGATGCTATGG--TTGTAAGCAGTTCCCTGGTTTAAGTGAT-GATGAC-GG---GAAA-AC
gi|4 : cctctatagaacaaatatgataataaatcttaggttgatatactgttacttatgtatcacatttgtgtcctattattataccttacaagtgtaaagatatgaaaatatcaatgtgaaaagctttatgattattggtcaatatattggatgatttgttgaaaattccgtttcaaactaagggaaaagagaatgtgtgatggaccgtggtataacagatcagagtaacttttaagggccagaggtttgctctttgaggcagttgaccagccaagtgttgggacgaatgccgtcactagctagccagagtgtaagtagggatgttttcatgtTTTG-TTT-AAAAG-CTCAGTCAA----A--TAAG--GA-AACCGGAGAATGTGGTAATAGGACCG---TCGG-CGT-AATAACCTGTTCCGGAGTACCTTTTTACCCAG--ACGGTTTGTCCCTTCTGAAG-AGTTAGCACCACCAAA-TTGGGGCCCGAATCG------TAAC--TTCC-AG----TATAGGCCATAGTTCTGACTTTCGTTAATCCAT-TTAACACAATGTCTA-CA-TA---TATATTTTTTGTGTTAG--AACTCTG-GACAT-TCACG-AAGA-AC---ACGTAGTTGCCGTTGGTAGGAGCAG--TAAATATTC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAT-AAC-TGGAA-ACACCAAGGTGCTGCCGCTCCAGGAACTGTCAGCTG-ATGATACCGTGGCACTAAATGC-AAC---CCTTTTA---GGAATGTCT-ACAAATAAAGTTCTCATTAAATAAcagtcgaggtggacttcgccatagggaagatagtcagagtgaggaacgtggcactaaatgcaacagtatattagcgaatagtctaaaatagatacgttatggcttaaata
gi|5 : cctcgatatagaagaaaagataaaaaggtacttgttattactcttgtatgataggttagctaatcatatatatagtacaaactataaaaaagaatatcaacgtgaaatactctcaattattattcataattggataAACACAAG-AATA---CTTGTCATAT-ATAAACACAAAAAATTCCAA-----AAAAC--GTTTA--TTACG-TACCAA-CA-TAATTCTTTTTTTA-TGATTA-GTTATTATACAT---ATCTGAGTAATATCTATT---TTACATCACAAACT-CAATC-TG-CCTTTA-TTTGAAAAG-C---GTTAA-TTTA--TAAGAGGA-AGCCGGAGAACGTTGTGATGGGAACGCTATTAC-TAG-CATAGCCTCTACCAGAGAAATGTCTGATCCAC--ACCGTGTTTCCCTGCTGAAG-CCTTAAGATAACCATG-TTTGCCCCCG-TCTG-----CCAAC--CTGC-AGCA-TCATCTCCTAAAGTTCTGACCTTTTACGATCCAT-TCAGGACAATGTCAA-CCTTG-C-TGTATTGTTTGGA--AT---ACTCCACAACAG-TGACG-AAGA-AG---ACATAGTGCCCGTCTGTAGGGACCG--TGAAAATTC-CTGTACTGGGA--TTGTATCCA--CTCCCGATGT---TGTT-AATGAC-AAC-CGGAA-ACACTAATGTTCCGCTGTTCCAGGTACTACTCCTAG-ACGTCACACCCatcgtcaaatcgtttccttttc
gi|6 : TAA-TCAA--T--GAGAA-ACCCGGAGAATGTGGTAACAGGTCCACTGGCGG-----AGTAACCTTTTCCGGAATAATGCTTGACCCAC--ACCCTGTCTCCCTTCTGAAG-AGTTAGCACCGCTAAA-TTGGGGCCCGATTCGTAATACTCACTTCCGCCACCA-TTGTAGGCCATTGTTCTTACTTTTGTCGATCCAT-TCAACACAATGTCTA-CA-TA---TATAGAATTTGAA--ACAAAACTCTGC-ACAT-TCACG-AAAA-AC---ACGTAGTTGCCGTTGGTAGGGGCGG--TAAACATCC-CGTTGCTAGGG--TTGTATCCGTTTCCCTG--GT---TAGT-GATGAC-CGC-GGGAA-ACACCAAAGTGCCGCTGTTCCAGGAAATACTGGATG-ATGTCACGAAGGCAGTAAAGGC-CAC---CTTTT-----GGA---TC--ACGTCTG-------C---AAATAA----ATATTGCAT
gi|7 : tcattcaatttgattaccctttacaaacaatatctttaaattatcCCGATGT---TGTT-AATGAC-AGC-CGGAA-ATACTAGCGTCCCACTGTTCCAGGTACTACTGGATG-ACGTGACCCCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATGAA----TCA--AAATAAGA--ATATTACACATGCTCATCGTTAGTGGGAGGGC-AGCTATATGTACGAAATtaataa
gi|8 : TTA-TCTAAAATGTC---CTTAT-TTTA--TATGAGGA-ATCCAGAGAAGCTTGTTAATGGAGCACCGTATG-CAT-AATAACCTTTGCCGGCAAAATGaattcattataatgtataccatgaacaatccacgtaagcacttgtgaattcatggaatactgtacaatgaaaaggattattacgcctatattgtgaagttatgacatttacccaacatttatattgcagattaaagaaaaacgaacaaggaagctaacaatcaggaacttacaggcagaaacgtcaccagacacattcgcagattttttcccaatatcccatcaaagtgtccaaaccaaggcattgtaaagattgaaataaaatagataaggaggacaatgtttatcatattataaa
gi|8 : c---ACGAAGTGACCGTCGACAGGGGCTG--TGAAGATTC-CGGTGTTAGGG--TCGTATCC--TCCTCCTATAT---TGTA-CACGAC-ACG-TGGAA-ACACTAATGTACCGCTGTTCCAGGTGCTGCTAGAAG-ACGACACTCCCACAGTGAAGGC-AAC---CTTTTTGGTTAGA---TCTAAAAAA--AA------A--AAATAAGCTAAGATTGTTTATcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgaagtgaccgtcgacaggggctgtgaagattccggtgttagggtcgtatcctcctcctatattgtacacgacacgtggaaacactaatgtaccgctgttccaggtgctgctagaagacgacactcccacagtgaaggcaacctttttggttagatctaaaaaaaaaaaataagctaagattgtttatcaagtataccaagcaa
gi|9 : cttatctaaaatgtccttattttatatgaggaatccagagaagcttgttaatggagcaccgtatgcataataacctttgccggcaaaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-ATACTAAAGTCCCGCTGTTCCAGTTGCCATTGGATG-ACGTTACACCCGCCGTGAAGGC-TACTGTCTTCTTA---AGA---TCTAATGAATTAA----TCA--AATTCAGC--TTATT-TATATAC----CGCAAGTGGGAGGAG-GATTATATTCATAAAATcaagtataccaagcaa