lowQualScore : 1 2222 111 1111111 333333333333333333 1 88888888888888888888888888888888888888888888888888888888888888 22222 5555 11 3333333333 1 111 111 222222222222222 22222222222 111 1111 11 222222 1 1 111 1 33333333 111 1 111 1 111 111 55555555555555 22222 111 11 111 222222 1111 555555555555555555 1 11111 1 33333333 55555555555 666666666
lowQualScore : 8 2 8 3 8888 3 2 111 4444444 4 999999999999999999 3 44444444444444444444444444444444444444444444444444444444444444 1 1 7 22222 2 99 2 1 5 5 5 5 3 2222 1 0 1 5 66 4 4 4 2 2 1111111111 99 0 1 6 99 000 3 555 666666666666666 22222222222 99 3 99 444 8 6 4444 8 55 11 0 0 8 3 1 3 888888 5 0 8 2 2 7 777 3 0 2 3 8 66666666 3 555 2 77 6 777 9 44 0 777 777 00000000000000 0 1 0 66666 444 66 666 1 000000 0 1 4444 8 000000000000000000 0 0 9 88888 2 5 1 11111111 7 11111111111 2 6 444444444 6
lowQualScore : . . . . .... . . ... ....... . .................. . .............................................................. . . . ..... . .. . . . . . . . .... . . . . .. . . . . . .......... .. . . . .. ... . ... ............... ........... .. . .. ... . . .... . .. .. . . . . . . ...... . . . . . . ... . . . . . ........ . ... . .. . ... . .. . ... ... .............. . . . ..... ... .. ... . ...... . . .... . .................. . . . ..... . . . ........ . ........... . . ......... .
lowQualScore : 8 8 0 8 0000 2 5 777 7777777 2 777777777777777777 3 00000000000000000000000000000000000000000000000000000000000000 7 0 3 77777 5 22 2 0 7 7 7 7 5 8888 8 8 4 4 00 2 0 0 5 0 5555555555 88 0 7 7 22 222 5 000 222222222222222 55555555555 22 0 22 444 0 8 8888 0 88 00 8 8 2 7 0 2 888888 0 0 8 5 0 8 555 2 0 2 2 8 22222222 2 000 5 22 2 555 8 00 0 555 555 66666666666666 8 4 6 88888 000 00 000 4 444444 8 2 8888 8 555555555555555555 8 0 2 55555 5 5 0 00000000 7 55555555555 5 0 000000000 0
consensus : ACGCAAAATTTNTTAG-TTAGGTT--AAACTGTTGGAAGGTTATAGGAG---AAAGGAC-AA-CACTCA--T------G-AT--TNAAGGTTGCCAATTACAA-------TTT---AGATTTACTGG--ANAAAATTAT----AC-AAANATTACCAG-TT-GTTCGTTTCAATGACT---ATGAAG--TNAAGCT-TTTTGCAGCGGCATAT-T-CCG-TGGC---TTTNTTTGGTTTTCTCAGAGTGGG-GGAATTNACNGNGAGTAGNTANCA---NAANACA-AATCAT-TCAGTCAGC--TTTCAGGAC--TTAGAATTCTTACCAAANCAA-AAC-------AAA--TTT----AGAATATTACTAA--GGCANTCC--AAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TACTGAAA---ACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGTGCAG--------TTTACAGCAGTGTTACATANAGCTAATAGG---GCATTAGGTC-TTGA---TTCCAG---CAGGT--CAAATCTCGTTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCNAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--NA-CANCCCTTTTCAANAACCATGGNCTTTCATCGGA-TGAGTT--GCTTT
Reference ( gi|2 ) : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGGAC-AA-CACTCA--T------G-AT--TCAAGGTTGCCTATTAC---------TTT---AGATTTACTGG--ACAAAATTAT----AC-ACATATTACCAG-TT-GTTTGTTTCAATGACT---ATGAAG--TTAAGCT-TTTTGCAGCGGCATAT-T-CCA-TAGCCTTTTTTTTTGGTTTTTTCAGAGTTGA-GGAGTTAACAGGGGGTAGCTACCA---TAAGACA-AATCAT-TCAGTCAGC--TTTCAGGAT--TTAGAATACATACCAAACCAA-AAC-------AAA--TTC----AGAATATTACTAA--GGCATTCC--AAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGAAA---ACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGTGCAG--------TTTACAGCTGTGTTACATAAAGCTATTAGG---GCATTAGGTC-TTGA---TTCCAG---CAGGTT-CAAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCATTAAACTCAGTTTAGTTTT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGAA---AAAC-AC-AA-CACTCA--T------T-ATATTTAAGGTTGCCAATTAC---------TTT---AGATTTAC--A--CCAAAA-----------AAAAATTA--AA------TTGTTTTAATGCCT---AT-AAG--TTAAACT-TTTTGCAGCGGCATAT-T-CCA-T
gi|7 : aaaaatctaggaaataattttgatcaaACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGGTCTAACCATTCAACA------G-AT--TGTAGACTGCCCATCACAA-------AAC---ACATTT--TGG--AGAGGCTTATAAAAACGACATAT--CTAGTTT-GTTCG--TCAA--ACT---TTGAGG--CCATTCT-TTTTTCAACGGCATTT-T-CGG-TGGC---TTATCATGCTTTTCTGAGGGTTGG-TGAATTTACTGTAAATAG--ATCA----AAG-CA-AA-CA---CAGCAAGTTATTTC----T--TTTGA--ACATATTAAAATAAGAAA-------AAA--C-------GAAGATT-CTGATGGAAATTTC--AAAG-AGGTTAGgtgatgttatcattcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|11 : actctgtgacaacACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT-C----CGCTGG--T------G-CT-----AGATTGTCAATTACAA-------TAC---AGCTTCTTTAG--ACAA--TTAT----CC-AAATCTTGCCAT-GT-ATTTGCCT---TGACAGAAATGGAG--CAAAGTTAGTTCG-AGCAGCATAT-T-TAC-TAGCC---TTCTTTGGTTTCCTTAGAGTTaatgcctttctcgaaaaccgaccaacttggaaaa
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGGTC-TA-GAC-CA--TCAACAAG-AT--TGTAGACTGCCCATCACAAAACACATTTTGTGAGA------GGCTATAAAA--------AC-A-ACATCTCTAG-TTTGTTCGTT-CAA--ACT----TGAGGCATT---CT-TTTTTCAACG-CATTT-T-CCGGTGGC---TTATCATGCTTTTCTTAGGGTGGGTGGAATTTACTGTAAATAGGT--CAAAGCAAAACACAGCCATATTAATTTTC--TTTGAACATAATTAAAATA-AGAAAAAACGAA-GATTCTGATGAAACTTTCCAATAGAAC-TTAAAAA--TACCTTCTCGAAAACCGACCAACTTGGAAAGGGGC---TCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGT--------TGTTTGGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTATTT-ATACATTTGGATGGTAGTCCTCTCAC-AAGGTTCAG--------TTT----CTGT-TCAAATATAAATA--AGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAGACAAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGG-ATTAATTGAT--GA-TATCC
gi|6 : gactgctggtgacaaacaAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGGAC-AA-CACCCA--T------G-AT--TCAAGGTTGCCAATTAC---------GTT---AGATTTACTGG--AGCAAATTAT----GC-ACATTTTAGCAG-TT-GTTTGTTTCAGTGAC---------G--TAAAGAT-TTTTGCAGCGGCATAT-T-CCA-TGGCC--TCTGTTTGG-TTTTTCAGAGTGGG-GGAGTTAACAGGGGGTAGCTACCA---TAATACA-AATCAT-TCAGTCAGC--TTTCAGGAC--TTACAATTCTTACC-AAC-----AC-------ATA--TTT----AGAATATTACTAA--GGCAGTCT--AAAACAGAatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|4 : TGTTGGAAGGTTATAGGAG---AAAGGAC-AG-CATCCAG-T------ATAT--TTAAGGTTGCCAATTAC---------TTT---AGATTTACAAA--AAAAAA--------AC-AAAAA--ACAAA-TT-TTATGTTTCAATGACT---ATGAAG--TTAAGCT-TTTTGCAGTGGCATATATGCCA-TGGCGTTATTATTagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|10 : T-TTTTACAGCTGCATAT-T-CCA-TGGC-----TTTTTGGTTCTTTCAGAGTGGG-GGATTTAACAAGGAGTAGTTAACA---AAATACA-AATTAT-TCAGGCTGC--TTTCAGGAC--TTAGAATTCTTACCAAACC-G-AAC-------AAA--TTT----AGAATATTACTAA--AGCATTCT--ATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAAA------AACAA-GTTCCATT--CTAGCAT---GTTTGTTAGAATAATTTCccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|4 : ATTAT-TCCGTCAGC--TGTCAGGAC--TTAGAATTCTTACCAAAACAA-AAG-------AAA--TTT----A--ATATTACTAA--GGCAGTCC--AAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGAAA---ACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGTGCAG--------TTTACAGCAGTGTTACATATAGCTAATAGG---AC-TT-GATG-TTGA---TTCCAG---CAAGT-------------CTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTT---ACAA-CATGAGCTTTCATCGAA-TGAGTT--GCTTT
gi|3 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttATCAT-TCAGTCAGC--TTTCAGGAC--TT-GAATTCTTGCCAAAACAA-AAC-------AAA--TTT----A--ATATTACCAA--GGCAGTCC--AAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGAAA---ACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGC-TAGCTCTTCCCCTTACA---GTGTTGCAT-AAGCTAATAGG---ACATCAGGTC-TTGA---TTCCAG---CAG--------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGA-TGAGTT
gi|17 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttAAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GAAA---ACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATcgcttt
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGTGCAG--------TTTACAGCAGTGTTACATAAAGCTATTGGG---GCATTAGGTC-TTGA---TTCCAG---CAAGTT-AAAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGA
gi|5 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacag-CAAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|9 ): GACTCTGTGACAATGCGCAACATTTTTTAATCAGGAAATTATTAGAAGGAGTCAAAAGGTCACACCATTCAAAAGATTGTAGACTGCCCATCACAAAACACATTCTTGAGATGCTTATAAAAACTATATCTCTAGTTTGTTCGTCAAACTTTGAGGCCATTCTTTTTTTCAACGGCATTTTCGGTGGCTTATCATGCTTTCCTTGGGTTTGGTTAATTTACTGTAAATAGTTCAAAGCAAACACAGCAAATTGTTTCTTTTGAACATA
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|14 ): TGCTTTCCTTAGGTTGGTGAATTTCACTGCTAAATAGTTCAATAGCAAACATAGCAATTATTTCTTTCGAACACTGTAAAAATATAGAAAGAACGAAGATTGCTGATGGTAAATTTTGCT
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 33 111 3333333333 2222 2222222222222 11 11111 22222 11 1111 33333333333333 11 11111 111 222222 1 111 11 111 1111 111 111 4444444444444444 111 111 11 1 111 2222222 333333 111 22222 33333333 2
lowQualScore : 7 5 2 44 77 5 22 888888 000 55 5 0 7777777777 66 3 5555 9 00 1 999 2 6666666666666 66 1 88 9 55555 33 22 4 44 4 4 66 5 888 7777 0 1 0 2 6 0 1 1 1 55555 1 1 55 1 6 5 0 1 2222 1 5 1 33 5 33333333333333 33 77 77 33333 3 1 6 6 111 6 2 99 1 0 333333 0 8 3 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 2222222222222222 888 111 00 3 0 2 444 2 6 99 2 1111111 222222 2 6 5 444 8 0 0 33333 1 11111111 7 11 0
lowQualScore : . . . .. .. . .. ...... ... .. . . .......... .. . .... . .. . ... . ............. .. . .. . ..... .. .. . .. . . .. . ... .... . . . . . . . . . ..... . . .. . . . . . .... . . . .. . .............. .. .. .. ..... . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ................ ... ... .. . . . ... . . .. . ....... ...... . . . ... . . . ..... . ........ . .. .
lowQualScore : 5 7 3 44 99 0 44 555555 555 44 0 9 6666666666 55 2 1111 5 66 0 888 5 9999999999999 44 1 22 4 88888 88 11 4 66 4 4 11 0 888 0000 7 7 4 5 7 3 0 0 0 88888 0 0 88 0 7 0 7 4 1111 7 1 9 11 0 66666666666666 66 99 99 11111 2 0 7 3 777 7 5 22 0 8 000000 0 0 6 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 1111111111111111 333 777 77 3 7 5 333 2 7 22 5 7777777 555555 2 7 6 000 0 8 7 77777 0 33333333 3 77 0
consensus : ACGCAAAATTTCTTAG-TTAGG--A--AACTGTTGGAAG-GTTATAGGAGAAAGG--AC-AAC-ACTCA-T-A----G-ATTNNAGGTTGCCNATTACAANNCAGATTTACTGGANAAGATTATACAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCCAAGCT-TTTTG-CAGCGGCATAT-T-CCG-TGG-C---TTTTCTTGGTTTTCTCAGGGTNGG-GGAATTNACNGNGAGTAGCT---ANCAAA--ANA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTA-GAATATTACT--AA--GGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAACC---ACAG---CTTCTAGGTTG-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT-CAAGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTNTTAG-TTAGGTTA--AACTGTTGGAAG-GTTATAGGAGAAAGG--AC-AAC-ACTCA-T------G-ATTNAAGGTTGCCAATTACAATTTAGATTTACTGGANAAAATTATACAAAN---ATTACC---AGTT-GTTCGTTTCAATGACT---ATGAAGTNAAGCT-TTTTG-CAGCGGCATAT-T-CCG-TGG-C---TTTNTTTGGTTTTCTCAGAGTGGG-GGAATTNACNGNGAGTAGNT---ANCANA--ANA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAANCAAAACAAA--------------TTTA-GAATATTACT--AA--GGCA----NTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TACTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCGTTCTTTTCGAATTGGGGCAGCAACC---ACAG---CTTCNAGGTTG-GGTTTTTCGGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--NA-CANCCCTTTTCAANAACCATGGNCTTTCATCGGATGAGTT-GCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGGA-A--AATTATTAGAGGAGTCA------AAAGG--TC-TAG-AC-CA-TCAACAAG-ATTGTAGACTGCCCATCACAAAACACATTT--TGTGAGAGGCTATAAAAAC---AACATCTCTAGTTTGTTCGTT-CAA--ACT----TGAGG-CATTCT-TTTTT-CAACG-CATTT-T-CCGGTGG-C---TTATCATGCTTTTCTTAGGGTGGGTGGAATTTACTGTAAATAGGTCAAAGCAAA--ACA-C-AGCCATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTC-CAATAGAACTTAAA--AATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAG-AC-AAATCTCACTC-TTCCGTATTGGGGCCGCGGTTCAGATAGTTTCTTCT-GCTTACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CCA-TGG-C---TTT--TTGGTTCTTTCAGAGTGGG-GGATTTAACAAGGAGTAGTT---AACAAA--ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACCAAACC-GAACAAA--------------TTTA-GAATATTACT--AA--AGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTTA--AGCTACTTGAAA-GT-AT--GAGCAAGT---C---C-GCTGG-T------G-CT---AGATTGTCAATTACAATACAGCTTCTTTAGACAA--TTATCCAAAT---CTTGCC---ATGT-ATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TAC-TAG-C---CTTCTTTGGTTTCCTTAGAGTgtttgttagaataatttc
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATt
gi|2 : ACCCAAAATTTCTTAG-TTAGG--A--AACTGTTGGAAG-GTTATAGGAGAAAGG--AC-AAC-ACTCA-T------G-ATTCAAGGTTGCCTATTAC--TTTAGATTTACTGGACAAAATTATACACAT---ATTACC---AGTT-GTTTGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CCA-TAG-CCTTTTTTTTTGGTTTTTTCAGAGTTGA-GGAGTTAACAGGGGGTAGCT---ACCATA--AGA-CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCA-GAATATTACT--AA--GGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--GTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAACT---ACAG---CTTCTAGGTTA-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAG-GTTATAGGA-AAAAC--AC-AAC-ACTCA-TTA----T-ATTTAAGGTTGCCAATTAC--TTTAGATTTAC--ACCAAAA------AAAA---ATTA-----AATT-----GTTTTAATGCCT---AT-AAGTTAAACT-TTTTG-CAGCGGCATAT-T-CCA-TGtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA---ATATTACC--AA--GGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG----------------TCTTTTCGAATTGGAGCAGCAACC---ACAG---CTTCGAGGTTG-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtgatgttatcattcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAG-GTTATAGGAGAAAGG--AC-AGC-ATCCAGT------ATATTTAAGGTTGCCAATTAC--TTTAGATTTACAAAAAAAAA----ACAAAA---A--ACA---AATT-TTATGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCCA-TGG-C---GTTATT
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA---ATATTACT--AA--GGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAA--G-------------TCTTTTTGAATTGGAGCAGCAACC---ACAG---CTTCGAGGTTG-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTTACAA----CATGAGCTTTCATCGAATGAGTT-GCTTTattccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttC-AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG--ATAG---TTTC--GCTTAAGGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctaAG-TTAGG--A--AACTGTTGGAGG-GTTATAGGAGAAAGG--AC-AAC-ACCCA-T------G-ATTCAAGGTTGCCAATTACG--TTAGATTTACTGGAGCAAATTATGCACAT---TTTAGC---AGTT-GTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CCA-TGGCC---TCTGTTTGGTTTT-TCAGAGTGGG-GGAGTTAACAGGGGGTAGCT---ACCATA--ATA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACCAA--C---ACATA--------------TTTA-GAATATTACT--AA--GGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAA--G-TTAAAATTTCGTTCTTTTCAAATTGGGGCAGCAACC---ACAG---CTTCTAGGTTG-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG--A--AGTTATTAGAAG-GATTCA----AAAGG--TCTAACCATTCA-ACA----G-ATTGTAGACTGCCCATCACAAAACACATTT--TGGAGAGGCTTATAAAAACGACATATCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CGG-TGG-C---TTATCATGCTTTTCTGAGGGTTGG-TGAATTTACTGTAAATAG-----ATCAAAGCAAA-CACAGCA----AGTTA--TTTC----T----TTTGAA--CATATTAAAATAAGAAAAA-----------------ACGAAGATT-CT--GATGGAAA----TTTCAAAG-AGGTTAG
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG--A--AATTATTAGAAG-G----AGTCAAAAGGTCAC-ACC-ATTCA-AAA----G-ATTGTAGACTGCCCATCACAAAACACATT--CTTGAGATGCTTATAAAAACTATATCTCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CGG-TGG-C---TTATCATGCTTTCCTTGGGTTTGG-TTAATTTACTGTAAATAGTTCAAAGCAAAC-ACAGCAAATTGT-Taatgcctttctcgaaaaccgaccaacttggaaaa
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|14 ): TGCTTTCCTTAGGTTGGTGAATTTCACTGCTAAATAGTTCAATAGCAAACATAGCAATTATTTCTTTCGAACACTGTAAAAATATAGAAAGAACGAAGATTGCTGATGGTAAATTTTGCT
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 2222 1111 111 333333333 2222 111111111111 2222222222222 11 11111 111 33333 11 1 1111 33333333333333 11 11111 111 222222 1 111 11 111 1111 111 111 3333333 11111 111 11 111 111 2222222 333333 111 33333 33 1 1
lowQualScore : 7 5 2 0000 1 00 0000 000 55 5 0 777777777 22 1 0000 111111111111 2 8888888888888 0 00 1 88 9 55555 1 8 22 4 44 1 4 4 44 777 4 444 2 0 1 1 66 1 1 1 44444 1 99 1 1 4 0 1 2222 1 5 1 5 1 33333333333333 33 77 5 33333 0 3 1 6 4 111 6 2 99 1 0 333333 0 8 1 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 7777777 22 33 77777 111 00 111 0 2 444 1 6 99 2 1111111 222222 2 6 5 444 8 0 0 33333 6 1 00 3 7 5
lowQualScore : . . . .... . .. .... ... .. . . ......... .. . .... ............ . ............. . .. . .. . ..... . . .. . .. . . . .. ... . ... . . . . .. . . . ..... . .. . . . . . .... . . . . . .............. .. .. . ..... . . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ....... .. .. ..... ... .. ... . . ... . . .. . ....... ...... . . . ... . . . ..... . . .. . . .
lowQualScore : 8 7 3 0000 7 55 1111 555 44 0 9 999999999 00 0 5555 444444444444 5 1111111111111 2 88 1 22 4 88888 1 5 11 0 77 4 0 0 55 888 2 222 5 2 1 0 44 0 0 0 11111 0 33 0 4 4 7 4 1111 7 1 9 0 4 66666666666666 66 99 7 11111 4 2 0 7 2 777 7 5 22 0 8 000000 0 0 0 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 5555555 55 00 88888 777 33 333 7 5 333 0 7 22 5 7777777 555555 2 7 6 000 0 8 7 33333 7 0 33 3 3 0
consensus : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTGGAGAAGATTATANAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CCG-TGGC---TTNT-CNTGNTTTTCTCAGGGTTGG-GGAATTNACNGTGAGTAGTTCAAANCAAA--ANA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTA-GAATATTACT--AA-GGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA-----CACANCCCTTT--AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTGGANAAGATTATACAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCCAAGCT-TTTTG-CAGCGGCATAT-T-CCG-TGGC---TTTT-CTTGGTTTTCTCAGGGTNGG-GGAATTNACNGNGAGTAGCT---ANCAAA--ANA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTA-GAATATTACT--AA-GGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA-----CACANCCCTTTCAAGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGG--TC-TAG-AC-CA-TCAACAA-GATTGTAGACTGCCCATCACAAAACACATTT--TGTGAGAGGCTATAAAAAC---AACATCTCTAGTTTGTTCGTT-CAA--ACT----TGAGGC-ATTCT-TTTTT-CAACG-CATTT-T-CCGGTGGC---TTAT-CATGCTTTTCTTAGGGTGGGTGGAATTTACTGTAAATAGGTCAAAGCAAA--ACA-C-AGCCATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTC-CAATAGAACTTAAA-AATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAG-AC-AAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CCA-TGGC---TTTT---TGGTTCTTTCAGAGTGGG-GGATTTAACAAGGAGTAGTT---AACAAA--ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACC-AAACCGAACAAA--------------TTTA-GAATATTACT--AA-AGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT---C---C-GCT-----------GGTGCTAGATTGTCAATTACAATACAGCTTCTTTAGACAA--TTATCCAAAT---CTTGCC---A-TGTATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TAC-TAGC---CTTC-TTTGGTTTCCTTAGAGTgtttgttagaataatttc
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATt
gi|2 : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-------GATTCAAGGTTGCCTATTAC--TTTAGATTTACTGGACAAAATTATACACAT---ATTACC---AGTT-GTTTGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CCA-TAGCCTTTTTT-TTTGGTTTTTTCAGAGTTGA-GGAGTTAACAGGGGGTAGCT---ACCATA--AGA-CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCA-GAATATTACT--AA-GGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--GTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA-----CACATCCCTTT--AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGA----AAAAC--AC-AAC-ACTCATT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTAC--------ACCAAAAAAAA---ATTA-----AATT-----GTTTTAATGCCT---AT-AAGTTAAACT-TTTTG-CAGCGGCATAT-T-CCA-TGtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA---ATATTACC--AA-GGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG----------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCA-ACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtgatgttatcattcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAGGTTATAGGAG---AAAGG--AC-AGC-ATCCAGT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTACAAAAAAAAA----ACAAAA---A--ACA---AATTT-TATGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCCA-TGGC---GTT
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA---ATATTACT--AA-GGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAA--G-------------TCTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA-----CACAGCCCTTT--ACAA-CATGAGCTTTCATCGAATGAGTT-GCTTTattattccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttCT-TTTTA-CAACGGCATTT-T-AGG-TTGC---TTAT-CATGCTTCTCTTAGGGTTGG-TGAACATACTTTAAATAGTCCAAAGCAAAC-AGAGCAAATCAT-T
gi|5 : gttC-AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-tcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacaaacctcattctttccgtattgaggccgcatcagatagtttcgcttaaggtcattcggaaacagaaataaaaagctacaaaagtagagttcgaatgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctaAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGG--AC-AAC-ACCCA-T-------GATTCAAGGTTGCCAATTAC--GTTAGATTTACTGGAGCAAATTATGCACAT---TTTAGC---AGTT-GTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CCA-TGGC---CTCTGTTTGGTTTT-TCAGAGTGGG-GGAGTTAACAGGGGGTAGCT---ACCATA--ATA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACC--AAC---ACATA--------------TTTA-GAATATTACT--AA-GGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAA--G-TTAAAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGG--TCTAACCATTCAAC-----A-GATTGTAGACTGCCCATCACAAAACACATTT--TGGAGAGGCTTATAAAAACGACATATCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CGG-TGGC---TTAT-CATGCTTTTCTGAGGGTTGG-TGAATTTACTGTAAATAG-----ATCAAAGCAAA-CACAGCA----AGTTA--TTTC----T----TTTGAA--CATATTAAAATAAGAAAAA-----------------ACGAAGATT-CT--GATGGAA----ATTTCAAAGAGGTTAG
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG----AAATTATTAGAAGG----AGTCA---AAAGGTCAC-ACC-ATTCA-A-----AAGATTGTAGACTGCCCATCACAAAACACATT--CTTGAGATGCTTATAAAAACTATATCTCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CGG-TGGC---TTAT-CATGCTTTCCTTGGGTTTGG-TTAATTTACTGTAAATAGTTCAAAGCAAAC-ACAGCAAATTGT-Taatgcctttctcgaaaaccgaccaacttggaaaa
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|14 ): TGCTTTCCTTAGGTTGGTGAATTTCACTGCTAAATAGTTCAATAGCAAACATAGCAATTATTTCTTTCGAACACTGTAAAAATATAGAAAGAACGAAGATTGCTGATGGTAAATTTTGCT
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 2222 1111 111 333333333 2222 111111 3333333333333 11111 111 1111 2 1 1111 33333333333333 1 11111 111 222222 1 111 11 111 1111 111 111 3333333 11111 111 11 111 111 2222222 333333 111 11 1 222 1 1
lowQualScore : 7 5 2 0000 1 00 0000 000 55 5 0 777777777 22 1 0000 555555 9999 1 1111111111111 0 44 1 88 9 55555 1 5 22 4 44 1 4 4 44 222 1 999 1 1 77 66 1 5 1 3333 1 0 1 5 0 4 4444 3 1 99999999999999 0 99 55555 3 1 6 4 111 6 2 99 1 0 333333 0 8 1 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 7777777 22 33 77777 111 00 111 0 2 444 1 6 99 2 1111111 222222 2 6 5 444 8 0 0 88 3 1 333 3 7 5
lowQualScore : . . . .... . .. .... ... .. . . ......... .. . .... ...... .... . ............. . .. . .. . ..... . . .. . .. . . . .. ... . ... . . .. .. . . . .... . . . . . . .... . . .............. . .. ..... . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ....... .. .. ..... ... .. ... . . ... . . .. . ....... ...... . . . ... . . . .. . . ... . . .
lowQualScore : 8 7 3 0000 7 55 1111 555 44 0 9 999999999 00 0 5555 555555 1111 0 1111111111111 2 66 1 22 4 88888 1 9 11 0 77 4 0 0 55 222 0 777 0 7 55 00 0 0 0 8888 0 0 0 0 1 0 2222 5 7 22222222222222 8 22 22222 2 0 7 2 777 7 5 22 0 8 000000 0 0 0 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 5555555 55 00 88888 777 33 333 7 5 333 0 7 22 5 7777777 555555 2 7 6 000 0 8 7 33 3 0 333 3 3 0
consensus : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGAC---TATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CCG-TGGC---TTNT-CATGCTTTTCTTAGGGTTGG-NGAATTT-ACTG-TAAATAGTTCAA-AGCAAACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGAAGATTATANAAAC---ATTACC---AGTTTGTTCGTTTCAATGAC---TATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CCG-TGGC---TTNT-CNTGNTTTTCTCAGGGTTGG-GGAATTN-ACNG-TGAGTAGTTCAA-ANCAAA-ANA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGG--TC-TAG-AC-CA-TCAACAA-GATTGTAGACTGCCCATCACAAAACACATTT--TGTGAGAGG-CTATAAAAAC---AACATCTCTAGTTTGTTCGTT-CAA--AC---T-TGAGGC-ATTCT-TTTTT-CAACG-CATTT-T-CCGGTGGC---TTAT-CATGCTTTTCTTAGGGTGGGTGGAATTT-ACTG-TAAATAGGTCAA-AGCAAA-ACA-C-AGCCATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTCCAATAGAACTTAAAAATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAG-AC-AAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CCA-TGGC---TTTT---TGGTTCTTTCAGAGTGGG-GGATTTA-ACAA-GGAGTAGTT----AACAAA-ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACCAAACCGAA-CAAA--------------TTTAGAATATTACT--AAAGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT---C---C-GCT-----------GGTGCTAGATTGTCAATTACAATACAGCTT--CTT-TAGACAATTATCCAAAT---CTTGCC---A-TGTATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TAC-TAGC---CTTC-TTTGGTTTCCTTAGAGTTgtttgttagaataatttc
gi|14 : TGCTTTCCTTAGG-TTGG-TGAATTTCACTGCTAAATAGTTCAATAGCAAACATA-GCAATTAT-T
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATtctttcgaacactgtaaaaatatagaaagaacgaagattgctgatggtaaattttgct
gi|2 : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-------GATTCAAGGTTGCCTATTAC--TTTAGATTTACTG-GACAAAATTATACACAT---ATTACC---AGTT-GTTTGTTTCAATGAC---TATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CCA-TAGCCTTTTTT-TTTGGTTTTTTCAGAGTTGA-GGAGTTA-ACAG-GGGGTAGCT----ACCATA-AGA-CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCAGAATATTACT--AAGGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--GTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGA----AAAAC--AC-AAC-ACTCATT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTAC---------ACCAAAAAAAA---ATTA-----AATT-----GTTTTAATGCC---TAT-AAGTTAAACT-TTTTG-CAGCGGCATAT-T-CCA-TGtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA--ATATTACC--AAGGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG----------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtgatgttatcattcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAGGTTATAGGAG---AAAGG--AC-AGC-ATCCAGT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTACAA-AAAAAAA--ACAAAAA-------ACA---AATTT-TATGTTTCAATGAC---TATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCCA-TGGCG--TTAT-TAT
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA--ATATTACT--AAGGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAA--G-------------TCTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTT---ACAA-CATGAGCTTTCATCGAATGAGTT-GCTTTtccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttCT-TTTTA-CAACGGCATTT-T-AGG-TTGC---TTAT-CATGCTTCTCTTAGGGTTGG-TGAACAT-ACTT-TAAATAGTCCAA-AGCAAACAGAGCAAATCAT-T
gi|5 : gttC-AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-tcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacaaacctcattctttccgtattgaggccgcatcagatagtttcgcttaaggtcattcggaaacagaaataaaaagctacaaaagtagagttcgaatgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctaAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGG--AC-AAC-ACCCA-T-------GATTCAAGGTTGCCAATTAC--GTTAGATTTACTG-GAGCAAATTATGCACAT---TTTAGC---AG-TTGTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CCA-TGGC---CTCTGTTTGGTTTT-TCAGAGTGGG-GGAGTTA-ACAG-GGGGTAGCT----ACCATA-ATA-CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACC--AAC---ACATA--------------TTTAGAATATTACT--AAGGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAA--G-TTAAAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGG--TCTAACCATTCAAC-----A-GATTGTAGACTGCCCATCACAAAACACATTT--TG-GAGAGGCTTATAAAAACGACATATCT---AGTTTGTTCGT--CAA--AC---TTTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CGG-TGGC---TTAT-CATGCTTTTCTGAGGGTTGG-TGAATTT-ACTG-TAAATAGATCAA-AGCAAACACAGCAAGTTAT-T
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG----AAATTATTAGAAGG----AGTCA---AAAGGTCAC-ACC-ATTCA-A-----AAGATTGTAGACTGCCCATCACAAAACACATT--CTT-GAGATGCTTATAAAAACTATATCTCT---AGTTTGTTCGT--CAA--AC---TTTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CGG-TGGC---TTAT-CATGCTTTCCTTGGGTTTGG-TTAATTT-ACTG-TAAATAGTTCAA-AGCAAACACAGCAAATTGT-Ttcttttgaacatattaaaataagaaaaaacgaagattctgatggaaatttcaaagaggttagaatgcctttctcgaaaaccgaccaacttggaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 2222 111 333333333 2222 111111 3333333333333 11111 111 1111 1 1111 33333333333333 1 11111 111 222222 1 111 11 111 1111 111 111 3333333 11111 111 11 111 111 2222222 333333 111 11 1 222 1 1
lowQualScore : 7 5 2 0000 1 00 888 000 55 5 0 777777777 22 1 0000 555555 7777 1111111111111 33 1 1 88 9 55555 5 22 4 44 1 4 4 8888 555 1 666 1 1 66 5 5 0 5 1 3333 5 0 1 9 2 3 4 4444 3 1 99999999999999 0 99 55555 3 1 6 4 111 6 2 99 1 0 333333 0 8 1 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 7777777 22 33 77777 111 00 111 0 2 444 1 6 99 2 1111111 222222 2 6 5 444 8 0 0 88 3 1 333 3 7 5
lowQualScore : . . . .... . .. ... ... .. . . ......... .. . .... ...... .... ............. .. . . .. . ..... . .. . .. . . . .... ... . ... . . .. . . . . . .... . . . . . . . .... . . .............. . .. ..... . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ....... .. .. ..... ... .. ... . . ... . . .. . ....... ...... . . . ... . . . .. . . ... . . .
lowQualScore : 8 7 3 0000 7 55 888 555 44 0 9 999999999 00 0 5555 555555 9999 1111111111111 55 4 1 22 4 88888 9 11 0 77 4 0 0 4444 000 0 666 1 8 00 0 0 8 0 0 8888 0 0 4 6 5 2 0 2222 5 7 22222222222222 8 22 22222 2 0 7 2 777 7 5 22 0 8 000000 0 0 0 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 5555555 55 00 88888 777 33 333 7 5 333 0 7 22 5 7777777 555555 2 7 6 000 0 8 7 33 3 0 333 3 3 0
consensus : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTAT-CATGCTTTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTNT-CATGCTTTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGG--TC-TAG-AC-CA-TCAACAA-GATTGTAGACTGCCCATCACAAAACACATTT--TGTGAGAGG-CTATAAAAAC---AACATCTCTAGTTTGTTCGTT-CAA--ACT----TGAGGC-ATTCT-TTTTT-CAACG-CATTT-T-CC--GGTGGC---TTAT-CATGCTTTTCTTAGGGTGGGTGGAATTT-A-CTG-TAAATAGGTCAA-AGCAA-AACACAGC----CATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTCCAATAGAACTTAAAAATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAG-AC-AAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CC--A-TGGC---TTTT---TGGTTCTTTCAGAGT-GG-GGGATTT-AACAA-GGAGTAGTT----AAC-A-AA-ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACCAAACCGAA-CAAA--------------TTTAGAATATTACT--AAAGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT---C---C-GCT-----------GGTGCTAGATTGTCAATTACAATACAGCTT--CTT-TAGACAATTATCCAAAT---CTTGCC---A-TGTATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TA--C-TAGC---CTTC-TTTGGTTTCCTTAGAGTTgtttgttagaataatttc
gi|14 : TGCTTTCCTTAGG-TTGG-TGAATTTCA-CTGCTAAATAGTTCAATAGC-A-AACATAGC-AATTAT-T
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATtctttcgaacactgtaaaaatatagaaagaacgaagattgctgatggtaaattttgct
gi|2 : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-------GATTCAAGGTTGCCTATTAC--TTTAGATTTACTG-GACAAAATTATACACAT---ATTACC---AG-TTGTTTGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CC--A-TAGCCTTTTTT-TTTGGTTTTTTCAGAGTTGA-GGAGTTA-A-CAG-GGGGTAGCT----ACC-ATAAGA---CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCAGAATATTACT--AAGGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--GTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGAA---AAAC---AC-AAC-ACTCA-TT----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTAC---------ACCAAAAAAAA---ATTA-----AATT-----GTTTTAATGCCT---ATAAG-TTAAACT-TTTTG-CAGCGGCATAT-T-CCATG-TGATG--TTAT-CATtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA--ATATTACC--AAGGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG----------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAGGTTATAGGAG---AAAGG--AC-AGC-ATCCAGT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTACAA-AAAAAAA--ACAAAAA-------ACA---AATTT-TATGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCC--A-TGGCG--TTAT-TAT
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA--ATATTACT--AAGGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAA--G-------------TCTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTT---ACAA-CATGAGCTTTCATCGAATGAGTT-GCTTTtccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttCT-TTTTA-CAACGGCATTT-T-AG--G-TTGC---TTAT-CATGCTTCTCTTAGGGTTGG-TGAACAT-A-CTT-TAAATAGTCCAA-AGC-A-AACAGAGCAAATCAT-T
gi|5 : gttC-AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-tcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacaaacctcattctttccgtattgaggccgcatcagatagtttcgcttaaggtcattcggaaacagaaataaaaagctacaaaagtagagttcgaatgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctaAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGG--AC-AAC-ACCCA-T-------GATTCAAGGTTGCCAATTAC--GTTAGATTTACTG-GAGCAAATTATGCACAT---TTTAGC---AG-TTGTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CC--A-TGGC---CTCTGTTTGGTTTT-TCAGAGTGGG-GGAGTTA-A-CAG-GGGGTAGCT----ACC-ATAATA---CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACC--AAC---ACATA--------------TTTAGAATATTACT--AAGGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAA--G-TTAAAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGG--TCTAACCATTCAAC-----A-GATTGTAGACTGCCCATCACAAAACACATTT--TG-GAGAGGCTTATAAAAACGACATATCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CG--G-TGGC---TTAT-CATGCTTTTCTGAGGGTTGG-TGAATTT-A-CTG-TAAATAGATCAA-AGC-A-AACACAGCAAGTTAT-T
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG----AAATTATTAGAAGG----AGTCA---AAAGGTCAC-ACC-ATTCA-A-----AAGATTGTAGACTGCCCATCACAAAACACATT--CTT-GAGATGCTTATAAAAACTATATCTCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CG--G-TGGC---TTAT-CATGCTTTCCTTGGGTTTGG-TTAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATTGT-Ttcttttgaacatattaaaataagaaaaaacgaagattctgatggaaatttcaaagaggttagaatgcctttctcgaaaaccgaccaacttggaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 2222 111 333333333 2222 111111 3333333333333 11111 111 1111 1 1111 33333333333333 1 11111 111 222222 1 111 11 111 1111 111 111 3333333 11111 111 11 111 111 2222222 333333 111 11 1 222 1 1
lowQualScore : 7 5 2 0000 1 00 888 000 55 5 0 777777777 22 1 0000 555555 7777 1111111111111 33 1 1 88 9 55555 5 22 4 44 1 4 4 8888 555 1 3 0 777 1 66 5 5 0 5 1 3333 5 0 1 9 2 3 4 4444 3 1 99999999999999 0 99 55555 3 1 6 4 111 6 2 99 1 0 333333 0 8 1 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 7777777 22 33 77777 111 00 111 0 2 444 1 6 99 2 1111111 222222 2 6 5 444 8 0 0 88 3 1 333 3 7 5
lowQualScore : . . . .... . .. ... ... .. . . ......... .. . .... ...... .... ............. .. . . .. . ..... . .. . .. . . . .... ... . . . ... . .. . . . . . .... . . . . . . . .... . . .............. . .. ..... . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ....... .. .. ..... ... .. ... . . ... . . .. . ....... ...... . . . ... . . . .. . . ... . . .
lowQualScore : 8 7 3 0000 7 55 888 555 44 0 9 999999999 00 0 5555 555555 9999 1111111111111 55 4 1 22 4 88888 9 11 0 77 4 0 0 4444 000 2 5 1 888 8 00 0 0 8 0 0 8888 0 0 4 6 5 2 0 2222 5 7 22222222222222 8 22 22222 2 0 7 2 777 7 5 22 0 8 000000 0 0 0 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 5555555 55 00 88888 777 33 333 7 5 333 0 7 22 5 7777777 555555 2 7 6 000 0 8 7 33 3 0 333 3 3 0
consensus : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCATGCT---TTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCATGCT---TTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGG--TC-TAG-AC-CA-TCAACAA-GATTGTAGACTGCCCATCACAAAACACATTT--TGTGAGAGG-CTATAAAAAC---AACATCTCTAGTTTGTTCGTT-CAA--ACT----TGAGGC-ATTCT-TTTTT-CAACG-CATTT-T-CC--GGTGGC---TTATCATGCT---TTTCTTAGGGTGGGTGGAATTT-A-CTG-TAAATAGGTCAA-AGCAA-AACACAGC----CATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTCCAATAGAACTTAAAAATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAG-AC-AAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CC--A-TGGC---TTTT--TGGT---TCTTTCAGAGT-GG-GGGATTT-AACAA-GGAGTAGTT----AAC-A-AA-ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACCAAACCGAA-CAAA--------------TTTAGAATATTACT--AAAGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT---C---C-GCT-----------GGTGCTAGATTGTCAATTACAATACAGCTT--CTT-TAGACAATTATCCAAAT---CTTGCC---A-TGTATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TA--C-TAGC---CTTCTTTGGT---TTCCTTAGAGTTgtttgttagaataatttc
gi|14 : TGCT---TTCCTTAGG-TTGG-TGAATTTCA-CTGCTAAATAGTTCAATAGC-A-AACATAGC-AATTAT-T
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATtctttcgaacactgtaaaaatatagaaagaacgaagattgctgatggtaaattttgct
gi|2 : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-------GATTCAAGGTTGCCTATTAC--TTTAGATTTACTG-GACAAAATTATACACAT---ATTACC---AG-TTGTTTGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CC--A-TAGCCTTTTTTTTTGGT---TTTTTCAGAGTTGA-GGAGTTA-A-CAG-GGGGTAGCT----ACC-ATAAGA---CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCAGAATATTACT--AAGGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--GTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGAA---AAAC---AC-AAC-ACTCA-TT----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTAC---------ACCAAAAAAAA---ATTA-----AATT-----GTTTTAATGCCT---ATAAG-TTAAACT-TTTTG-CAGCGGCATAT-T-CCATG-TGATG--TTATCATtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA--ATATTACC--AAGGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG----------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAGGTTATAGGAG---AAAGG--AC-AGC-ATCCAGT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTACAA-AAAAAAA--ACAAAAA-------ACA---AATTT-TATGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCC--A-TGGCG--TTATTAT
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA--ATATTACT--AAGGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAA--G-------------TCTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTT---ACAA-CATGAGCTTTCATCGAATGAGTT-GCTTTtccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttCT-TTTTA-CAACGGCATTT-T-AG--G-TTGC---TTATCATGCT---TCTCTTAGGGTTGG-TGAACAT-A-CTT-TAAATAGTCCAA-AGC-A-AACAGAGCAAATCAT-T
gi|5 : gttC-AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-tcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacaaacctcattctttccgtattgaggccgcatcagatagtttcgcttaaggtcattcggaaacagaaataaaaagctacaaaagtagagttcgaatgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctaAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGG--AC-AAC-ACCCA-T-------GATTCAAGGTTGCCAATTAC--GTTAGATTTACTG-GAGCAAATTATGCACAT---TTTAGC---AG-TTGTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CC--A-TGGC---C--TC-TGTTTGGTTTTTCAGAGTGGG-GGAGTTA-A-CAG-GGGGTAGCT----ACC-ATAATA---CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACC--AAC---ACATA--------------TTTAGAATATTACT--AAGGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAA--G-TTAAAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGG--TCTAACCATTCAAC-----A-GATTGTAGACTGCCCATCACAAAACACATTT--TG-GAGAGGCTTATAAAAACGACATATCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CG--G-TGGC---TTATCATGCT---TTTCTGAGGGTTGG-TGAATTT-A-CTG-TAAATAGATCAA-AGC-A-AACACAGCAAGTTAT-T
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG----AAATTATTAGAAGG----AGTCA---AAAGGTCAC-ACC-ATTCA-A-----AAGATTGTAGACTGCCCATCACAAAACACATT--CTT-GAGATGCTTATAAAAACTATATCTCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CG--G-TGGC---TTATCATGCT---TTCCTTGGGTTTGG-TTAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATTGT-Ttcttttgaacatattaaaataagaaaaaacgaagattctgatggaaatttcaaagaggttagaatgcctttctcgaaaaccgaccaacttggaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 2222 111 333333333 2222 111111 3333333333333 11111 111 1111 1 1111 33333333333333 1 11111 111 222222 1 111 11 111 1111 111 111 3333333 11111 111 11 111 111 2222222 333333 111 11 1 222 1 1
lowQualScore : 7 5 2 0000 1 00 888 000 55 5 0 777777777 22 1 0000 555555 7777 1111111111111 33 1 1 88 9 55555 5 22 4 44 1 4 4 8888 555 1 3 0 777 1 66 5 5 0 5 1 3333 5 0 1 9 2 3 4 4444 3 1 99999999999999 0 99 55555 3 1 6 4 111 6 2 99 1 0 333333 0 8 1 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 7777777 22 33 77777 111 00 111 0 2 444 1 6 99 2 1111111 222222 2 6 5 444 8 0 0 88 3 1 333 3 7 5
lowQualScore : . . . .... . .. ... ... .. . . ......... .. . .... ...... .... ............. .. . . .. . ..... . .. . .. . . . .... ... . . . ... . .. . . . . . .... . . . . . . . .... . . .............. . .. ..... . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ....... .. .. ..... ... .. ... . . ... . . .. . ....... ...... . . . ... . . . .. . . ... . . .
lowQualScore : 8 7 3 0000 7 55 888 555 44 0 9 999999999 00 0 5555 555555 9999 1111111111111 55 4 1 22 4 88888 9 11 0 77 4 0 0 4444 000 2 5 1 888 8 00 0 0 8 0 0 8888 0 0 4 6 5 2 0 2222 5 7 22222222222222 8 22 22222 2 0 7 2 777 7 5 22 0 8 000000 0 0 0 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 5555555 55 00 88888 777 33 333 7 5 333 0 7 22 5 7777777 555555 2 7 6 000 0 8 7 33 3 0 333 3 3 0
consensus : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCATGCT---TTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCATGCT---TTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGG--TC-TAG-AC-CA-TCAACAA-GATTGTAGACTGCCCATCACAAAACACATTT--TGTGAGAGG-CTATAAAAAC---AACATCTCTAGTTTGTTCGTT-CAA--ACT----TGAGGC-ATTCT-TTTTT-CAACG-CATTT-T-CC--GGTGGC---TTATCATGCT---TTTCTTAGGGTGGGTGGAATTT-A-CTG-TAAATAGGTCAA-AGCAA-AACACAGC----CATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTCCAATAGAACTTAAAAATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAG-AC-AAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CC--A-TGGC---TTTT--TGGT---TCTTTCAGAGT-GG-GGGATTT-AACAA-GGAGTAGTT----AAC-A-AA-ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACCAAACCGAA-CAAA--------------TTTAGAATATTACT--AAAGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT---C---C-GCT-----------GGTGCTAGATTGTCAATTACAATACAGCTT--CTT-TAGACAATTATCCAAAT---CTTGCC---A-TGTATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TA--C-TAGC---CTTCTTTGGT---TTCCTTAGAGTTgtttgttagaataatttc
gi|14 : TGCT---TTCCTTAGG-TTGG-TGAATTTCA-CTGCTAAATAGTTCAATAGC-A-AACATAGC-AATTAT-T
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATtctttcgaacactgtaaaaatatagaaagaacgaagattgctgatggtaaattttgct
gi|2 : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-------GATTCAAGGTTGCCTATTAC--TTTAGATTTACTG-GACAAAATTATACACAT---ATTACC---AG-TTGTTTGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CC--A-TAGCCTTTTTTTTTGGT---TTTTTCAGAGTTGA-GGAGTTA-A-CAG-GGGGTAGCT----ACC-ATAAGA---CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCAGAATATTACT--AAGGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--GTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGAA---AAAC---AC-AAC-ACTCA-TT----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTAC---------ACCAAAAAAAA---ATTA-----AATT-----GTTTTAATGCCT---ATAAG-TTAAACT-TTTTG-CAGCGGCATAT-T-CCATG-TGATG--TTATCATtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA--ATATTACC--AAGGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG----------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtcagtcagctttcaggacttgaattcttgccaaaacaaaacaaatttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAGGTTATAGGAG---AAAGG--AC-AGC-ATCCAGT-----A-TATTTAAGGTTGCCAATTAC--TTTAGATTTACAA-AAAAAAA--ACAAAAA-------ACA---AATTT-TATGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCC--A-TGGCG--TTATTAT
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA--ATATTACT--AAGGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAA--G-------------TCTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTT---ACAA-CATGAGCTTTCATCGAATGAGTT-GCTTTtccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttCT-TTTTA-CAACGGCATTT-T-AG--G-TTGC---TTATCATGCT---TCTCTTAGGGTTGG-TGAACAT-A-CTT-TAAATAGTCCAA-AGC-A-AACAGAGCAAATCAT-T
gi|5 : gttC-AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-tcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacaaacctcattctttccgtattgaggccgcatcagatagtttcgcttaaggtcattcggaaacagaaataaaaagctacaaaagtagagttcgaatgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctaAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGG--AC-AAC-ACCCA-T-------GATTCAAGGTTGCCAATTAC--GTTAGATTTACTG-GAGCAAATTATGCACAT---TTTAGC---AG-TTGTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CC--A-TGGC---C--TC-TGTTTGGTTTTTCAGAGTGGG-GGAGTTA-A-CAG-GGGGTAGCT----ACC-ATAATA---CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACC--AAC---ACATA--------------TTTAGAATATTACT--AAGGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAA--G-TTAAAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGG--TCTAACCATTCAAC-----A-GATTGTAGACTGCCCATCACAAAACACATTT--TG-GAGAGGCTTATAAAAACGACATATCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CG--G-TGGC---TTATCATGCT---TTTCTGAGGGTTGG-TGAATTT-A-CTG-TAAATAGATCAA-AGC-A-AACACAGCAAGTTAT-T
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG----AAATTATTAGAAGG----AGTCA---AAAGGTCAC-ACC-ATTCA-A-----AAGATTGTAGACTGCCCATCACAAAACACATT--CTT-GAGATGCTTATAAAAACTATATCTCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CG--G-TGGC---TTATCATGCT---TTCCTTGGGTTTGG-TTAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATTGT-Ttcttttgaacatattaaaataagaaaaaacgaagattctgatggaaatttcaaagaggttagaatgcctttctcgaaaaccgaccaacttggaaaa
blockSeqs : C . T TTAT C . TCA TA C TTA CT A AATA TACTG CAAT CGACATATCT AT A T CT T AGAAA A AG A TT A A G ATG CTT T T TGG T G C A C T CAAT . T C T G A . . T G . G . T A A G C . T C GA A . G . C A . . TA A CTT T . A T . A . . . GTTC TC AT AG . TA AA G AC T A . C TGAACCG ATTGAA A . A . T GC T A TCA C T .
blockSeqs : C . T TT C . A A . GTA CA T AAAA TACAA AAAT CTATATCTCT AT G T TT T TA T AG . A A . . A G T T . T T . . . T CAA . T G T G A . . A A . G . T A G . T . . C . G . G . A T . . . C A A . T A . A . . . GTTA CC AT T . GA A G AG C . . C . A C . C . . . . G . . T
blockSeqs : A . T . C . A A . ACA TA A AAAA TACTG AAAT TCTTGCC GT G T TT T TA T AA . G A . . C G T A . T G . . . C CAA . . C G G A . . T A . G . G A G . T . . C . G . G . A T . . . A A A . A A . A . . . G TT GT C . GA G G G T . . C . . A . A . .
blockSeqs : T . T . C . A A . AAA TA A TT CTT GGCT TATTACC GT G T TT T TA T AG . G A . . A . A A . T T . . . T CAA . . T C G A . . T A . . . G A G . T . . C . G . . . C A . . . A A A . . T . . . . . . . . C . TA G G G A . . C . . G . . . .
blockSeqs : . . C . T . A A . T CA A TT TAC TGCT TTTTAGC T G C TT T TT A AG . G A . . A . A A . G G . . . C . . . C C . A . . T . . . . G . . . . . . . . G . . C . . G . . T . . . . . A .
blockSeqs : . . . T . T A . T GT C TT TTG AAA AATTA G . C . . TT C TT . G T . . G . A A . T T . . . A . . . C . . A .
blockSeqs : . . . . . GT C GT CTT AC ACA G . . . . . C TT . A A . . A . A A . T T . . . T . . . . . . . .
blockSeqs : . G T . . G . A . . . .
blockSeqs : . T T . . G . . . .
blockSeqCons : *** ATA****** TT** CTT*** NAAT TATTACC****** TT TA*** G*** T* **** ************** ** G**** *** ****** *** A** **** *** *** G****** C**** *** NA G** ** ****** ***
originalCons : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCA-T-----A-GATTNNAGGTTGCCNATTACAANNCAGATTTACTG-GAGANGATTATAAAAAC---ATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCATGCT---TTTCTTAGGGTTGG-NGAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAG--G-TC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
finalCons : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-ACTCAATA------GATTNNAGGTTGCCNATTACTT--CAGATTCTT---GAGANAATTATAAAAATATTACC------AGTTTGTTCGTTTCAATGACTA---TGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CCG---TGGC---TTATCATGCT---TTTCTTAGGGTTGGT-GAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCAG----TCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAGG------AAATCTCATTCTTTTCGAATTGGGGCAGCAACC----ACAG---CTTCNAGGTTG--GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT
Alignments
lowQualScore : 2222 111 11111 333333 222222 333333333333333 11111 111 1111111 1111 33333333333333 1 11111 111 222222 1 111 11 111 1111 111 111 4444444444444 11111 111 11 111 111 2222222 333333 111 11 1 222 1 1
lowQualScore : 7 5 2 0000 1 00 888 000 55 5 66 77777 22 1 555555 222222 666 444444444444444 33 1 1 88 9 55555 1 5 22 4 44 1 4 4 8888 555 1 3 1111111 777 66 555 55 2 9999 4 8 1 9 2 3 4 4444 3 1 99999999999999 0 99 66666 3 1 6 4 111 6 2 99 1 0 333333 0 8 1 1 444 0 8 0 11 5 666 1 8 8 1 7777 6 0 8 444 444 1111111111111 77777 111 00 111 0 2 444 1 6 99 2 1111111 222222 2 6 5 444 8 0 0 88 3 1 333 3 7 5
lowQualScore : . . . .... . .. ... ... .. . .. ..... .. . ...... ...... ... ............... .. . . .. . ..... . . .. . .. . . . .... ... . . ....... ... .. ... .. . .... . . . . . . . .... . . .............. . .. ..... . . . . ... . . .. . . ...... . . . . ... . . . .. . ... . . . . .... . . . ... ... ............. ..... ... .. ... . . ... . . .. . ....... ...... . . . ... . . . .. . . ... . . .
lowQualScore : 8 7 3 0000 7 55 888 555 44 0 99 66666 00 0 222222 000000 999 444444444444444 55 4 1 22 4 88888 1 9 11 0 77 4 0 0 4444 000 2 5 8888888 000 22 333 11 6 1111 4 9 4 6 5 2 0 2222 5 7 22222222222222 8 22 77777 2 0 7 2 777 7 5 22 0 8 000000 0 0 0 0 000 8 0 8 00 6 666 0 0 8 4 0000 0 8 0 000 000 5555555555555 88888 777 77 333 7 5 333 0 7 22 5 7777777 555555 2 7 6 000 0 8 7 33 3 0 333 3 3 0
consensus : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-AC--TCAATA-GATTNNAGGTTGCCNATTAC--NNAACAGATT--CT-NGAGANGATTATAAAAA-----TATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCAT-------GCT---TTTCTCAGGGTTGGT-GAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----NTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAGG----AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
Reference ( family-3561 ) : ACGCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-AC--TCAATA-GATTNNAGGTTGCCNATTAC--TT--CAGATT--CT-TGAGANAATTATAAAAA-----TATTACC---AGTTTGTTCGTTTCAATGACT---ATGAGGCNAAGCT-TTTTG-CAGCGGCATAT-T-CC--G-TGGC---TTATCAT-------GCT---TTTCTTAGGGTTGGT-GAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATCAT-TCAGTCAGCTTTCAGGAC----TTAGAATTCTTACCAAAACAAAACAAA--------------TTTAGAATATTACT--AAGGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCATTATATCAGGTT------ATTTGAATGTAA-GANCCCAAGGCTTTGGCNAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATANAGCTAATAGG----GCATTAGGTC-TTGA---TTCCAG---CAGG----AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-C---ACAG---CTTCNAGGTT-G-GGTTTTTCGGAAGAC-G-AAATATGNAGGGC-T--GGCAGAT-------GGAG------GTCCGAAT-CATACCAAAC---A-TACATAAGGAAATAACTCGA--CA-CANCCCTTT---AGAA-CATGGGTTTTCATCGGATGAGTTCGCTTT
gi|1 : ACGCAAAATTTTTTAAATCAGG----AAA--ATTA-----TTAGAGGAGTCAAAAGG--TC-TAG-ACCATCAACAAGATTGTAGACTGCCCATCAC--AAAACACATT--TTGTGAGAGG-CTATAAAAA-----CAACATCTCTAGTTTGTTCGTT-CAA--ACT----TGAGGC-ATTCT-TTTTT-CAACG-CATTT-T-CC--GGTGGC---TTATCAT-------GCT---TTTCTTAGGGTGGGTGGAATTT-A-CTG-TAAATAGGTCAA-AGCAA-AACACAGC----CATATTAATTTTCTTT--GAACATAATTAAAAT-------AAGAAAAAACGAAGATTCTGATGAAACTTTCCAATAGAACTTAAAAATACCTTCTCGAAAACCGACCAACTTGGAAAGGGG---CTCCGTAT-TGCTCAAACAAACAAAAA-ATT--ATT--CT-GT------CCTGTTG---TT-T----GGTTGGAAAAATAT--ATGCAATGAGGCCAAA--TTTGACGGTCCGTTA-TTTATACATTTGGATGGTAGTCCTCTCAC-AAGGT--TCAGTTT-C-------TGTTCAAATATA---AATAAGGTGCGCTTGAAGTCGCCGGCCCTTCCAAACTCAGGAGACAAATCTCACTC-TTCCGTATTGGGGCCGCGGT-TCAGATAGTTTCTTCT-GCTT-ACGGTCATTCGAAACA--G-AAAT-TAAAAAAC-TTAGGAAGAT-------GGAGT-----TTTCGAATGCCTTCAAAACGGTA-TA-ATCAGGA
gi|10 : gactgctggtgacaaacaT-TTTTA-CAGCTGCATAT-T-CC--A-TGGC---TTTT--T-------GGT---TCTTTCAGAGTGGG--GGATTT-AACAA-GGAGTAGTT----AAC-A-AA-ATA-CAAATTAT-TCAGGCTGCTTTCAGGAC----TTAGAATTCTTACCAAACCGAA-CAAA--------------TTTAGAATATTACT--AAAGCA----TTCTATAACAGATCAGGTGGGAAAGAGGG-----ATCAT-TACTAA---A---AACAA-GTTCCATT--CTAGCATttaattgatgatatccatcattttcacatttttttttaaatatgaaatgaaaaggttatttgattgttggttcatcaaattattaaatgggcgtttcttctatgcaagaaatcaatagatggtgtcgattggggtctaagacgaaacattacagtatttttttggcaaggaaaaggaggtatgaaaatggtt
gi|11 : ACGCAAAATTTCATAG-T--GGTT--AAGCTACTTGAAAGT-AT--GAG---CAAGT---C---C-GC--T------GGTGCTAGATTGTCAATTACAATA--CAGCTT--CT-TTAGACAATTATCCAAA-----TCTTGCC---A-TGTATTTGCCT---TGACAGAAATGGAGCAAAGTTAGTTCG--AGCAGCATAT-T-TA--C-TAGC---CTTCTTT-------GGT---TTCCTTAGAGTTgtttgttagaataatttc
gi|14 : T-------GCT---TTCCTTAGG-TTGGT-GAATTTCA-CTGCTAAATAGTTCAATAGC-A-AACATAGC-AATTAT-T
gi|17 : AAGCCGATCAAAGGGGAAAGGAGGAAACAATTGTGTA--GA---AAACAGCCATGT---ATTGACTAGCATTAAGCCTGTTGATATTATtctttcgaacactgtaaaaatatagaaagaacgaagattgctgatggtaaattttgct
gi|2 : ACCCAAAATTTCTTAG-TTAGG----AAACTGTTGGAAGGTTATAGGAG---AAAGG--AC-AAC-AC--TC-AT--GATTCAAGGTTGCCTATTAC--TT--TAGATTTACT-GGACAAAATTATACACA-----TATTACC---AG-TTGTTTGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGCGGCATAT-T-CC--A-TAGCCTTTTTTTTT-------GGT---TTTTTCAGAGTTGAG-GAGTTA-A-CAG-GGGGTAGCT----ACC-ATAAGA---CAAATCAT-TCAGTCAGCTTTCAGGAT----TTAGAATACATACCAAACCAAAACAAA--------------TTCAGAATATTACT--AAGGCA----TTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GACCCCAAGGCCTTGGCAAT---TTATTTTGT-CATTTTGATAGGAAACCTCTTACTAGGGT--GCAGTTTACA--GCTGTGTT-ACATAAAGCTATTAGG----GCATTAGGTC-TTGA---TTCCAG---CAGGTTC-AAATCTCATTCTTTTCGAATTGGGGCAGCAAC-T---ACAG---CTTCTAGGTT-A-GGTTTTTCAGAAGAC-G-AAATATGTAGGGC-T--GGCAGAT-------GGAG------GTCCAAAT-CATACCAAAC---A-TACATAAGGAAATAATTTAA--CA-CATCCCTTT---AGAA-CA-GGGTTTTCAT
gi|3 : ACCCAAAATTTATTAG-TTAAATTATAGACTGTTGGAAGGTTATAGGAA---AAAC---AC-AAC-AC--TCATTA-TATTTAAGGTTGCCAATTAC--TT--TAGATT--T------AC-ACCAAAAAAA-----AATTA-----AATT-----GTTTTAATGCCT---AT-AAGTTAAACT-TTTTG-CAGCGGCATAT-T-CCATG-TGATG--TTATCATTCAGTCAGCT---T---TCAGGACT--T-GAATTC---TTG-CCAAAA---CAA-AAC-A-AAtaaactcagtttagtttt
gi|3 : aaaaatctaggaaataattttgatcaaATCAT-TCAGTCAGCTTTCAGGAC----TT-GAATTCTTGCCAAAACAAAACAAA--------------TTTA--ATATTACC--AAGGCA----GTCCAAAGCAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGCCTGTCGGCA-TATATCAGGTT------ATTT-AATGTAA-GAACTCAAGGCTTTTGCTAT---TTATTTTGT-CATTTTGTTAGGAAACCCCTTACTAGGGCTAGCTCTTCCCCTTACAGTGTT-GCATA-AGCTAATAGG----ACATCAGGTC-TTGA---TTCCAG---CAG--------------TCTTTTCGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGAC-ACAAGTATGCTGGGCAT--GG-ATAT-------GTGA------ATCCCAAT-CATACCCAAC---ATTACATAAGG--ATAACTCAAGCTATCAACCCTTTTCAAGAACCATAGCTTTTCATCAGATGAGTTCGCTTTtttaatattaccaaggcagtccaaagcagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagcctgtcggcatatatcaggttatttaatgtaagaactcaaggcttttgctatttattttgtcattttgttaggaaaccccttactagggctagctcttccccttacagtgttgcataagctaataggacatcaggtcttgattccagcagtcttttcgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagacacaagtatgctgggcatggatatgtgaatcccaatcatacccaacattacataaggataactcaagctatcaacccttttcaagaaccatagcttttcatcagatgagttcgcttt
gi|4 : aaaaatctaggaaataattttgatcaaacccaaaatttattagttaaattatagactgttggaaggttataggaaaaacacaacactcattatatttaaggttgccaattactttagatttacaccaaaaaaaaattaaattgttttaatgcctataagttaaactttttgcagcggcatattccatgtgatgttTGTTGGAAGGTTATAGGAG---AAAGG--AC-AGC-AT--CCAGTA-TATTTAAGGTTGCCAATTAC--TT--TAGATT--TA-CAAAAAAAAAACAAAAA---------ACA---AATTT-TATGTTTCAATGACT---ATGAAGTTAAGCT-TTTTG-CAGTGGCATATATGCC--A-TGGCG--TTATTAT-------
gi|4 : ATTAT-TCCGTCAGCTGTCAGGAC----TTAGAATTCTTACCAAAACAAAAGAAA--------------TTTA--ATATTACT--AAGGCA----GTCCAAAACAGATCAGGTGGGAAAGGGGGAAGTCATCAT-TATTGA---AAACAACAA-GTTCCATT--CTAGCATCAAGTCTGTCAGCATTATATCAGGTT------ATTTGAATGTAA-GAACCCAGGGCCTTGGCTAT---TTATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATATAGCTAATAGG----AC-TT-GATG-TTGA---TTCCAG---CAAG-------------TCTTTTTGAATTGGAGCAGCAAC-C---ACAG---CTTCGAGGTT-G-TGTTTTTCAGAAGTC---AGATATGTAGGGC-T--GGCAGATTGAACCGGGAGATTGAAGTCCAAAT-CATACC-AAC---A-TGCATAAGGAAATAACTCGA--CA-CAGCCCTTT---ACAA-CATGAGCTTTCATCGAATGAGTT-GCTTTtccgtcagctgtcaggacttagaattcttaccaaaacaaaagaaatttaatattactaaggcagtccaaaacagatcaggtgggaaagggggaagtcatcattattgaaaacaacaagttccattctagcatcaagtctgtcagcattatatcaggttatttgaatgtaagaacccagggccttggctatttattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacatatagctaataggacttgatgttgattccagcaagtctttttgaattggagcagcaaccacagcttcgaggttgtgtttttcagaagtcagatatgtagggctggcagattgaaccgggagattgaagtccaaatcataccaacatgcataaggaaataactcgacacagccctttacaacatgagctttcatcgaatgagttgcttt
gi|5 : tgttggaaggttataggagaaaggacagcatccagtatatttaaggttgccaattactttagatttacaaaaaaaaaacaaaaaacaaattttatgtttcaatgactatgaagttaagctttttgcagtggcatatatgccatggcgttCT-TTTTA-CAACGGCATTT-T-AG--G-TTGC---TTATCAT-------GCT---TCTCTTAGGGTTGGT-GAACAT-A-CTT-TAAATAGTCCAA-AGC-A-AACAGAGCAAATCAT-T
gi|5 : gtt----AAACCTCATTCTTTCCGTATTGAGGCCGCATCAG---ATAG---TTTC--GCTTAA-GGTCATTCGGAA-ACAG-AAATA--AAAAGC-T---ACAAAA-------GTAGA-----GTTCGAAT-tcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacaaacctcattctttccgtattgaggccgcatcagatagtttcgcttaaggtcattcggaaacagaaataaaaagctacaaaagtagagttcgaatgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : gttctttttacaacggcattttaggttgcttatcatgcttctcttagggttggtgaacatactttaaatagtccaaagcaaacagagcaaatcatttcttttaaacatatagcaattgaaaaaaccgaagattctggtgaaaatttcatagaacttagaattcccttctcgaaaactaaccaaattggaaaagacgcattcgtattgttgcagcaacgaaggattatatctgtgttgttgggttgttgaaaaagtacattgcaatgaggtcaaattttgacagtctgttatttatacatttgtatgtatggtattcatctaacaaggtatttgttttgttcaatatcaaataagtcgcttgaagtcgccatccttccaaattcacgctacAG-TTAGG----AAACTGTTGGAGGGTTATAGGAG---AAAGG--AC-AAC-AC--CC-AT--GATTCAAGGTTGCCAATTAC--GT--TAGATTTACT-GGAGCAAATTATGCACA-----TTTTAGC---AG-TTGTTTGTTTCAGTGAC---------GTAAAGAT-TTTTG-CAGCGGCATAT-T-CC--A-TGGC---C--TC-T-------GTTTGGTTTTTCAGAGTGGGG-GAGTTA-A-CAG-GGGGTAGCT----ACC-ATAATA---CAAATCAT-TCAGTCAGCTTTCAGGAC----TTACAATTCTTACC--AAC---ACATA--------------TTTAGAATATTACT--AAGGCA----GTCTAAAACAGAgtctttaaacggtatcagggttgaatgattcttccattatttctcaaattttatataggaaattaaaaggttatttggattgttggtaca
gi|6 : AAGCCTGTCAGCATTATATCAGGTC------ATTTGAATGTAA-GACCCCAAGGCTTTGGCAAT---TCATTTTGT-CATTTTGATAGGAAACCCCTTACTAGGGT--GCAGTTTACA--GCAGTGTT-ACATAAAGCTATTGGG----GCATTAGGTC-TTGA---TTCCAG---CAAGTTA-AAATTTCGTTCTTTTCAAATTGGGGCAGCAAC-C---ACAG---CTTCTAGGTT-G-GAATTTTCAGAAGAC-G-AAATATGTAGGAC-T--GGCAGAT-------GGAA------GTCCAAAT-CATACCAAAC---A-TACATAAGGAagcctgtcagcattatatcaggtcatttgaatgtaagaccccaaggctttggcaattcattttgtcattttgataggaaaccccttactagggtgcagtttacagcagtgttacataaagctattggggcattaggtcttgattccagcaagttaaaatttcgttcttttcaaattggggcagcaaccacagcttctaggttggaattttcagaagacgaaatatgtaggactggcagatggaagtccaaatcataccaaacatacataagga
gi|7 : agttaggaaactgttggagggttataggagaaaggacaacacccatgattcaaggttgccaattacgttagatttactggagcaaattatgcacattttagcagttgtttgtttcagtgacgtaaagatttttgcagcggcatattccatggcctctgtttggtttttcagagtgggggagttaacagggggtagctaccataatacaaatcattcagtcagctttcaggacttacaattcttaccaacacatatttagaatattactaaggcagtctaaaacagACGCAAAAATT-TTAA-TTAGG----AAGTTATTAGAAGGATTCA-------AAAGG--TCTAACCAT--TCAACA-GATTGTAGACTGCCCATCAC--AAAACACATT--TT-GGAGAGGCTTATAAAAACGACATAT--CT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTT-CAACGGCATTT-T-CG--G-TGGC---TTATCAT-------GCT---TTTCTGAGGGTTGGT-GAATTT-A-CTG-TAAATAGATCAA-AGC-A-AACACAGCAAGTTAT-T
gi|9 : actctgtgacaacCGCAACATTTTTTAA-TCAGG----AAATTATTAGAAGG----AGTCA---AAAGGTCAC-ACC-AT--TCAAAA-GATTGTAGACTGCCCATCAC--AAAACACATT--CT-TGAGATGCTTATAAAAACTA--TATCTCT---AGTTTGTTCGT--CAA--ACT---TTGAGGCCATTCT-TTTTTTCAACGGCATTT-T-CG--G-TGGC---TTATCAT-------GCT---TTCCTTGGGTTTGGT-TAATTT-A-CTG-TAAATAGTTCAA-AGC-A-AACACAGCAAATTGT-Ttcttttgaacatattaaaataagaaaaaacgaagattctgatggaaatttcaaagaggttagaatgcctttctcgaaaaccgaccaacttggaaaa
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AAAAAAACGAAGATTCTGGAGGAAATTTCATAGAGCTTAGAATTCCTTTCTCAAATACCGACCAACTTGGAAAAGGGGCATCCGTATTGCTCCAACAAACAAAGAATTCTGTCTGTCCTGTTGATTGGTTGGAAAAGTACATTGCAATGGGGCCAAATTTTGATGGTTCTTTATATATCTATACATTTGGATGGTAATCCTCTCACAAGGTTTCAGTTCTGTTCAATATTAAATAAGTCGCTTGAAGTCGCCAGCCTTCCAAACTCACGATACAAATCTCATTCTCATTCGGAAACAGAAATTAAAAAGCTAGGAAGATGGAGTTTGAATGCCTTC
Unaligned ( gi|12 ): CCGAAGTATAAGCTAGCACAAACCAAGTAATCTCAGATTGCCTGATTTGGTGTGTAGGATCCTCAATTATAAAAAGGGCTTTCGTTGCTGCTAGAGACAGACCAGATGGTGTCAACTTGGGTCTAGAACGAATTGGATGTTGCATATGGTGGCAGGGTAAAGGTGGAATGGTTT
Unaligned ( gi|13 ): CAGATGTATGATTACCAATCACATTGGACACTTTGAAACTTATTATAGCTAAACTACATGTAGTATGTTCTAGTGCATGCGAGTCCCTCTTTTTTAAAGCAGCATTTTTGCTAACTTTCAATGTCTTGCTTAGGATAGGGGAATTTGC
Unaligned ( gi|15 ): GGAATTCGCTTCAAATCGAATGTTTATACACCGACAACTTGGAATAACTGGGCATCCGTACTGCTCCAGCAAACAAGAATTCTGTGCTGTCACTGTTGATTGTTGAAAATGTAC
Unaligned ( gi|16 ): CAAACAAAGAATTCTGTCTGTCCTATTGTTTGGTTGGAAAAGTATATTGCAATGTGGCCAAATTTTGACGGTCCGTTATTTATACGTTTGGATGGTAGTTCTCTCACAAGGT