lowQualScore : 2222222222 333333 44444444444444444444444 111 1111 1 1111 2222222 1 111 1111 11 22222222 11111 111 11 1111 1111 1 1111 1111 111 11 111 111111 11 1 2222222222 1 22 3 11 2 2 111 22222 2222 111 1111111 111 111 111111 11 11 222222 1 2222 77777777777777777777777777777777777777777777 1 111 1 111 888888888888888888888888888888888888888888888888 1111111111 11111 11111 1111 111 111111 1111 33333333333 111 1111 11111 111 11111111111111111111111 1111 111 1 222 111 111 111 33 1111111 11111111111 222222 1
lowQualScore : 2 2 2 5555555555 4 666666 2 5 55555555555555555555555 2 2 222 2 3 3 3 77 3 44 3 3 3 3 3 3 3 3 333 666 55 9999 7 55 0 3 3333 3 2 88 55 3 88 8888888 3 7 7 8 3 3 55 3 3 7 3 88 000 7777 3 22 3 77777777 3 99999 3 99999 7 111 55 3 3 3 3 3 3 3 55 22 6666 4 4 4 4 4 5555 4 4 2 77777 99 777 4 0 8888 4 6666 4 8 2222 4 4 555 55 4 8888 66 777 22 2 888 0 0 5 0 000 444444 00 5 5 5 66 5 1 7777777777 5 5 1 5 22 6 99 1 55 6 6 6 6 99 99 6 6 6 9 888 6 88 1 6 7 0 0 88 111 77 66666 99 6 0000 777 7777777 6 333 111 999999 6 8 11 8 6 00 333333 6 8 8 0000 1 7 22222222222222222222222222222222222222222222 0 333 8 0 8 3 555 77 444444444444444444444444444444444444444444444444 5 0 66 8888888888 55 00000 11111 2222 55 555 4 4 111111 4 2222 4 4 00000000000 44 55 777 55 4 666 5555 8 4 11111 8 777 3 2 3 3 88888888888888888888888 3 666 7 444 6666 55 3 2222 333 55 7 7 3 55 3 3 3 1 4 7777 3 88 55 1 222 333 3 3 3 3 111 55 1 666 000 3 3 3 3 3 3 3 3 3 44 3 77 3 3 2 2 5 11 2 2 2222222 55555555555 2 2 2 2 999999999 2 33 2 77 88888888 666666 88888 2 2 33 33 33 3
lowQualScore : . . . .......... . ...... . . ....................... . . ... . . . . .. . .. . . . . . . . . ... ... .. .... . .. . . .... . . .. .. . .. ....... . . . . . . .. . . . . .. ... .... . .. . ........ . ..... . ..... . ... .. . . . . . . . .. .. .... . . . . . .... . . . ..... .. ... . . .... . .... . . .... . . ... .. . .... .. ... .. . ... . . . . ... ...... .. . . . .. . . .......... . . . . .. . .. . .. . . . . .. .. . . . . ... . .. . . . . . .. ... .. ..... .. . .... ... ....... . ... ... ...... . . .. . . .. ...... . . . .... . . ............................................ . ... . . . . ... .. ................................................ . . .. .......... .. ..... ..... .... .. ... . . ...... . .... . . ........... .. .. ... .. . ... .... . . ..... . ... . . . . ....................... . ... . ... .... .. . .... ... .. . . . .. . . . . . .... . .. .. . ... ... . . . . ... .. . ... ... . . . . . . . . . .. . .. . . . . . .. . . ....... ........... . . . . ......... . .. . .. ........ ...... ..... . . .. .. .. .
lowQualScore : 9 9 9 4444444444 4 333333 9 7 00000000000000000000000 7 7 999 9 1 1 1 99 1 66 3 6 6 6 6 6 6 6 666 444 00 1111 3 00 9 6 7777 6 0 66 00 6 66 3333333 6 3 3 2 6 6 00 6 6 3 6 66 000 7777 6 33 6 55555555 6 11111 6 22222 3 444 66 6 6 6 6 6 6 6 00 33 5555 0 0 0 0 0 8888 0 0 0 66666 55 000 0 7 5555 0 5555 0 0 5555 0 0 000 55 0 5555 77 888 66 0 888 2 2 0 4 111 222222 66 0 0 6 99 0 4 4444444444 7 4 4 7 55 7 22 7 88 7 7 7 7 22 22 7 7 7 2 777 7 33 0 7 3 0 0 33 777 77 77777 22 7 8888 777 0000000 7 555 777 222222 0 0 00 0 0 00 000000 0 0 2 2222 2 0 88888888888888888888888888888888888888888888 0 222 0 8 8 8 777 99 111111111111111111111111111111111111111111111111 0 4 99 2222222222 55 00000 66666 5555 55 000 0 0 333333 0 5555 0 0 22222222222 88 55 555 55 0 222 9999 0 0 44444 0 555 6 0 6 6 11111111111111111111111 6 444 4 111 9999 00 6 7777 666 00 3 3 6 00 6 6 6 2 4 7777 6 66 00 3 333 666 6 6 6 6 444 00 3 444 000 6 6 6 6 6 6 6 6 3 66 1 99 1 1 9 7 0 99 5 5 3333333 88888888888 2 2 2 2 111111111 2 66 2 55 11111111 222222 22222 4 4 22 22 22 5
consensus : TATCAATAA-A-GTAG-A--AG------TATGTGA-----AATATCG-GT-AAAAA------TA-C-----TA-GCAC-T-GAGC-T-T-CGC-G-A-GC-GT--A-GCG--A-GCGA-AG-C-G-A-C-AG-GA---TGGCAACGTG---TTTTCCAG--A----T-T--T-C-TCT-A--TTT-ACCTAATTCGA--CC--AC-T--CC-A----AACAC-A-AG-AAATC-AC-AT--C-C-G-T-AA--T---GTCAATTAATG----A-ATTC--CTGACC-TT-------CAAATA-----C-CC-T---CA-GTT---C-ACC-T-CGAA-TCCACTT-TT-A-T-TCC--A--TTTTT----C-AAAATT-C-TG-T-TTT---G-AC-AA-CGGC-C---ATTT--AC---A-ATTC----CG-T----GT-G-A----C-GTCA-C---ATTT--A-C----TGTAGAT-AA---TAAAATATTATGTT---TCTGT-AATATTTCAGAT--ATTT---CT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACA-G--C-G--CTCC-AAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-AT--AAA------AA-------CAA--AGAC-TATAA-A-TAT-TGGTAA---ATA--TTTTTTT--A--A---TAAC---A-TA--TA-----G---C-TAC-A-TATCA-ACTTG--AT----G-TATAAT--ATT-----AT---C-TACA----GT--AAAT---GT-GAC-G---TCCA-C----ACG-G-AA----T-T---GT-AAA--TGGCCGC--T-TGTC-A-AAA-A-CAG-AATTTT-GA---AAAA-ATGGAAATAA-AAGTGGATT-CG-AGGTG---A--A-C-TG-A-G-G-----G-G---TATTNA-A-GGTCAG-G--AA--T-T----CATTAATTGAC---A--TT-A-CG-G--AT-GTG-ATTTCTT-GTGTTTTGG----A-GT--GG--TCGAATTAGGT---AA---T-A-GAG-AA-AA---T--CTGGAAAA---CACGTTGCCA---T-C-CT-G-T-C-G-CT-TCGC-T--CGC-T--AC-GC-T-C-GCG-AAGCTCA-G-T-GC-T----AGG---A------TTTTT-AC-C-GAT-AT-T-------TCA-CA-T-AC--TTCTAC--------TTTA-----ATTG-----A-T-A--A--AATT--GCCGACTCCT
Reference ( gi|4 ) : TATCAATAA-A-GTAG-A--GT------TATGTGAC----AATATCG-GT-AAAAA------T--C-----TA-GCA--T-GAGC-T-T-CGC-G-A-GC-GT--A-GCG--A-GCGA-AG-C-G-A-C-AG-GA---TGGCAACGTG---TTTTCCAG--A----T-T--T-C-TCT-A--TTT-ACCTAATTCGA--CC--AC-T--C--A----AACAC-A-AG-AA-TC-AC-AT--C-C-G-T-AA--T---GTCAATTAATG----A-ATTC--CTGACC-TT-------CAAATA-----C-CC-T---CA-GTT---C-ACC-T-CGAA-TCCACTT-TT-A-T-TCC--A--TTTTT----C-AAAATT-C-TG-T-TTT---G-AC-AA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----C-GTCA-C---ATTT--A-C----TGTAAAT-AA---TAAAATATTATGTT---TCTGT-AATATTTCAGAT--ATTT---CT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACA-G--C-G--CTCCCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATT-CCC-ACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATATG------CAC-GGT-GGT--ATTTTTTTTAT-AT-------GT--AT-AT--AAA------AA-------CAA--AGAC-TATAA-A-TATATGGTAA---ATA--TTTTTTT--A--A---TAAC---A-TA--TA-----GG--CCTAC-A-TATCA-ACTTG--AT----G-TATAAT--ATT-----AT---C-TACA----GT--AAAT---GT-GAC-G---TCCA-C----ACG-G-A-----T-T---GT-AAA--TGGCCGC--T-TGTC-A-AAA-A-CAG-AATTTT-GA---AGAA-ATGGAAATAA-AAGTGGATT-CG-AGGTG---G--A-C-TG-A-G-G-----G-G---TATTGA-A-GGTCAG-G--AA--T-T----CATTAATTGAC---A--TT-A-CG-G--AT-GTG-ATTTCTT-GTGTTTTGG----A-GT--GG--TCGAATTAGGT---AA---T-A-GAG-AA-AA---T--CTGGAAAA---CACGTTGCCA---T-C-CT-G-T-C-G-CT-TCGC-T--CGC-T--AC-GC-T-C-GCG-AAGCTC--G-T-GC-T----AGG---A------TTTTT-AC-C-GAT-AT-T-------TCA-CA-T-AC--TTCTAC--------TTTA-----ATTG-----A-T-A--A--AATT--GCCGACTGCT
gi|2 : TATCAATAA-A-GTAG-A--AG------TATGTGA-----AATATCG-GT-AAAAA------T--CC----TA-GCA-------C-T-------G-A-GC-GT--A-GCG--A-GCGA-AG-C-G-A-C-AG-GA---TGGCAACGTG---TTTTCCAG--A----T-T--TTC-TCT-A--TTT-ACCTAATTC---------T-C--C--A----AACAC-A-AG-AAATC-AC-AT--CGC-G-T-AAAGT---GTAATTTAATG----A-ATTC---TGACC-TT--------AAATA-----C-CA-T----A-GTT---C-ACC-T-ATAA-TTCACTT-TT-A-T-TCT--A--TTTTT----C-AAAATT-C-TG-T-TTT---G-AC-AA-GCGC--------------------TT----CG-T----GT-G-A----C-GTCA-C---ATTT--A-C----TGAAGAA-AA---TAAAATATTATGTT---TCTGC-AATATTTCAGAT--ATTT---CT-TATC-AATATT-T-AT-TTA--TACAAGACTA-AATGTA---ATCA-T-TTCC-AACCAGG--C-G--CTCC---AATTAAGTTGGA--A-TTGTATCC---T--G-C-TCGAAAA-AT-C-AATGAATACGACA-TTTCA-CT-ATCTGCCTTTCAAATTCCCC-ACAACGCGCAAGTTCAATAAG-AC---T-CTCACT-CT---CCCTT-A-TTTTGGAA-T-A---TGATCA-T-TTGG---AT-T------C-T-TACGG--AGACGCATATTCGGGGCCCCAC-GGT-GCTTAATTTTTCATAT--T-------GTA-AT-AC--AAG------AA-------AAAACAGAC-TAT-A-A-TATATTGTGAT--ATAATTTTTCTT--AACA---TAAC---ATTA--T--------------C-A-T-TCA-ACTTG--ATGGTAG-TA-AAT--ATT-----AT-----TACAG---GTGAAAAT---GT-GAC-G---TCCA-C----G-G-G---------T---GT-AAA--TGGCC-C--T-TGTCTATAAA-A-CAG-AATTTT-GA---AAAATATGG-AATAA-AAGTGGATT-CG-AGGTGCGAA--A-C-TG-A-G-G-----GCGGGCTACTGA-A-GGTCAG-G--AA----T----CATTAATTGAC---A--TTAA-CG-G--AT-GTG-ATTTCTT-GTGTTCTGG----A-GTG-GG--TCGAATTAGGTTAGAC---T-A-GAG-AA-GAAC-T--CTGGAAAA---C-CGTTGCCA---T-A-CT-G-T-C-G-CT-TCGC-T--CGC-T--ACAGC-T-C-GCG-AAGATCAAG-T-GC-TACTAAGG---A-------TTTT-AC-C-GGT-AT-T-------TTAGCA-T-AC--TTATAC--------TTT------ATTGA----A-T-AACA--AGTT--G-CGACT
gi|5 : cacaggagtcggcaatttTATCAATAA-A-GTAG-AATGT------AATGTGAA----ATTAT-G-GTGAAAAA------TTCC-----GA-GCGACT-GAGC-T---CGC-G-A-G--GT--A-GCG--A-GCGA-AG-C-G-A-C-AG-GAA--TGGCAA-GT----TTTTCCAG--AATTTT-T--C-C-TCT-A--TTT-AC-TAATTCGA--C---AC-T--C--AG---AACAC-AGAA-AA-TCCAC-AT--C-C-G-T-A---T---GTCAAT--ATG----ATATTC---TGA----T-------TAAAT--------CC-C---CATGTT---C-ACC-T-AGAAATTCACTT-T--A-TGTCT--A--TTTTT----T-CAAATT-C-TG-T-TT----G-AC-AA-CGGC-TGCAATTTG-ACCAGA-ATTT----CGGT----GT-G-AAAGTC-GTCA-CG--ATTT--A-C----TGGTAAT-AAACATCAAATATTATGTT---T-TGT-AATATTTCAGAT----TT---CT-TAT--AATATT-CCATGTTA--AAGAATA-TATAATG-A----C---T-TACCAAA-CA-GGCC-G--CTCA-AAAGTT--GTTGGAC-A-TT-T-TCCTCAT--GCC-TCGAAAC-AT-CAA-TGAATCCGA-A-GTTTA-CT-ATTTG-CTT-CAAATT-CCCCACAA-ACGCAAGT---ATAA--AT---T-AT--CTCC----CCTTT-A-TTTTTGAA-T-A-T-TTA-CA-CATTTG---ATAT------CAT-TACCGCCGAACG-A-ATCTG------CACTGGT-GAT--A-TTTTTTTAT-AT-------GT--AT-ATAAAAA------AA-------TAACGAGACATATAT-A-T-TGTGGT-A---ATA--TTTTTTTTAA--A---TAA----A-TA--TA-----GG--CCTAC----ATCA-ATCTGGAAT----GCTATAAA--ATT-----AT---CTTACA----G----AAT---GT-GAC-G---ATCA-CG---ACGTG-A-----T-T---GT-AAA--TGGC--C--T-TGTC---AAA-A-CAGAAATTTT-GA---AAAA-ATGGGACTAA-AAGTGG-TT-CC-AGGTG---A--A-C-TG-A-G-G-----G-------TTGA-ATGGTCAG-G--AA--T-T----CATTAATTGAC---A--TT-AGCG-GATAT-GTG-ATTTCTT-GTG-TTTGG----A-TT--GG--TCGAATTAGGTA--AA---T-A-AAG--A-AA---T--CTGGAACA---CACGTTGCCA---T-C-CTGG-T-C-G-CT-TCGCGT--CGC-cc
gi|3 : gagtcggcgtaattttTATCAATAA-A-GTAA-A--A--------AAG-GAT----GG-ATCG-GT-AAAAAAT----TA-C-----TA-CCAC-T-GAGC-T-T-CGC-GGA-GC-GT--A-GCG------GA-AG-CTG-A-C-AG-GA---TGGCA-CGTG---TTTCCC-G--A----T-TCTT-C-TCTCA--TTT-ACCT--TCCGA--CC--AC-T--CC-A----AACACGA-AG-AAATC-AC-AT--C-C-G-T-AA--T---GTCA--TAATGGAAAA-ATTC--C-GACC-TC-------TAAATA-----C-CA-----CA-GTT---C-CCC-T-CCGA-TCC--CT-TT-A-T-TCC--A--TTTTT----G-TCAACT-C-TG-T-TT----G-AC-A--CAGCGC---ATTT--AC---ACATTC----CG-T----GTTGCA----C-GTCAAC---ATTT--A------TGTAGATCAA---TAAA-TATTATGTT---TCTGTTAATATTTCTGAT--------------TC-AATATT-T-ATGTTA--TAAAATA-TA-AATG-A---AC---T-TAC--AAACA-G--CCG--CTCC-AAAGTT--GTTGGACCA-TT-T-TCA--AT--GCC-CCGAAAC-AT-CAAATGGATACGA-ACTTTCA-CT-----G-CTC-CAAATT-CCCCACAA----CGAG----ATAAA-AT---TTAT--CT-C----CCTTTTA-TTTTTGAAAT-A-T-TGA-CA-T-T-GG---ATATATCCATTAT-TACGG--AGACG-ATATTTG------CAC-GGTTGAT--ATTGTTAT-ATCAT-------GTTAATCAT--AAA------AAAAATTAACAA--AGAC-TATAT-A-TAT-TGGTAA----TA--TTTTTTT--A--AATCTAACCCAA-TA--TA---------CTTACCA-TAT-----TTG--AT----G-TTAAAA--ACT-----AT---CCTACA----GT--AAATT--GT-GACCG---TCAC-C----ACG-G-A-----T-T---G--GAA--TG-CCGC--T-TGTC-C-AAACA-CAG-AGTTTTTGA---AAAACATGGAAGGAA-AAGTG-----CG-GAGGG---A--A-C-TGTACG-G-----G-G---TAATTA-A-GGTCAG-G--AA--T-T----CATTAATTGAC---A--TT-ACCG-G--ATAGTA-GTTTTCT-GTGTTTTGG----ACGT--GG--TCGAA-TAAGTAA-AA---T-A-GAGAAA-AA---T--CTGGAAAA---CACGTTGCCA---T-C-CT-G-TAC-G-CTCTCGC-T--CGC-TG-AC-GCAT-C-GCGAAAGCTCA-G-T-G--T----AGT---AT-----TTTTT-AC-C-GA-------------TCA-C--T-ACT-TTCTAC--------TTTATGTTTATTG-----A-T-A--A--AATT--GCCGACT
gi|3 : ggagtcggcaatttTATCAATAA-ACATAA-A--GTAGAAAGTA-GTG---------ATCG-GTAAAAAA------TA-C-----TA--CAC-T-GAGCTT-T-CGC-G-ATGC-GTC-A-GCG--A-GCGAGAG-C-GTA-C-AG-GA---TGGCAACGTG---TTTTCCAG--ATT--T-T--T-C-TCT-AT-TTT-ACTT-ATTCGA--CC--ACGT--CCAA----AACAC-AGAA-AA-CT-ACTAT--C-CGG-T-AA--T---GTCAATTAATG----A-ATTC--CTGACC-TT--------AATTA-----C-CC-CGTACA-GTT---C-CCT-C-CG-----CACTT-TTCC-T-TCC--ATGTTTTT----CAAAAACT-C-TG-TGTTTG--G-AC-AAGCGG--C---ATTC---C---A-A-TC----CG-TG---GT-G-A----CGGTCA-CA--ATTT--A-C----TGTAc
gi|6 : ggagtcggcaattttatcaataaagtaaaaaaggatggatcggtaaaaaattactaccactgagcttcgcggagcgtagcggaagctgacaggatggcacgtgtttcccgattcttctctcatttaccttccgaccactccaaacacgaagaaatcacatccgtaatgtcataatggaaaaattccgacctctaaataccacagttcccctccgatccctttattccatttttgtcaactctgtttgacacagcgcatttacacattccgtgttgcacgtcaacatttatgtagatcaataaatattatgtttctgttaatatttctgattcaatatttatgttataaaatataaatgaacttacaaacagccgctccaaagttgttggaccattttcaatgccccgaaacatcaaatggatacgaactttcactgctccaaattccccacaacgagataaaatttatctcccttttatttttgaaatattgacattggatatatccattattacggagacgatatttgcacggttgatattgttatatcatgttaatcataaaaaaaattaacaaagactatatatattggtaatatttttttaaatctaacccaatatacttaccatatttgatgttaaaaactatccTATCAATAA-A-GTAG-A--AG------TATGTGA-----AATATCG-GT-AAAAA------T--CC----TA-GCAC-T-GAGC-T-T-CGC-G-A-GC-GT--A-GCG--A-GCGA-AG-C-G-A-C-AG-GA---TG-CAACGTG---TTTTCCAG--A----T-T--TTC-TCT-A--TTT-ACCTAATTCGA--CC--AC-T--CC-A----AACAC-A-AG-AAATC-AC-AT--C-C-G-T-AA--T---GTCAATTAATG----A-ATTC--CTGACC-TC---------AATA-----C-CCCT---CA-GTT---CCACC-T-CGAA-TCCACTT-TT-A-T-TCC--A--TTTTTT---C-AAAATT-C-TG-T-TTT---G-AC-AAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----C-GTCA-C---ATTT--A-C----TGTAAAT-AA---TAAAATATTATGTT---TCTGT-AATATTTCAGAT--ATTT---CT-TATC-AATATT-T-ATGTTA--AAAAATA-T--AATG-A---AC---T-TACC--AACA-GC-C-G--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCC-ACAA-ACGCAAGT---ATAAG-ATTA-T-AT--CT-C----CCTTT-ATTTTTTGAA-T-AGT-TGA-CA-T-TTGG---ATAT------CATGTACGG--AGACG-ATATA-G------CACAGGT-Gaaattgccgactc
gi|7 : aacggcaatttTATCAATAA-A-GTAG-A--AG------TATGTGA-----AATATCG-GT-AAAAA------T--CC----TA-GCAC-T-GAGC-T-T-CGC-G-A-GC-GT--A-GCG--A-GCGA-AG-C-G-A-C-AG-GA---TGGCAACGTG---TTTTCCAG--A----T-T--TTC-TCT-A--TTT-ACCTAATTCGA--CC--AC-T--CC-A----AACAC-A-AG-AAATC-AC-AT--C-C-G-T-AA--T---GTCAATTAATG----A-ATTC--CTGACC-TT-------CAA-TA-----C-CCCT---CA-GTT---C-CCCCT-CGAA-TCCACTT-TT-A-T-TCT--AC-TTTTT----C-AAAATT-C-TG-T-TTT---G-AC-AAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----C-GACA-C---ATTT--A-C----TGTAGAT-AA---TAAATTATTATGTT---TCTGT-AATATTTCAGAT--ATTT---CTATATCAAATATA-T-ATGTT---AAAAATA-TAGAATG-ACGTAC---T-TACC-AAACA-GC-C-G--CTCC--AAATT--GTTGGAC-ATTT-T-TCC--AT--GCC-TCGAAACAAT-CAAATGAATACGA-A-TTTCA-CTAATCTG-CTTTCAAATTCCCC-ACAA-ACGCAAGT---ATAAGTATGCGT-TT--CT-CCTTTCCCTT-ATTTTTTGAATT-A-T-TGA-AATT-TTGG---ATAT------t
gi|8 : cacaggagtcggcaatttTATCAATAACA-GT-------T------TA-GTAG------ATATCG-GT-AAAAAAAAAATTA-T-----TACACA--T-GAGC-T-T-CGC-A-G-GC-GA--A-GCG--G-GC------------T-AGTGA---TGGCAACGTG---TT--CCAG--A----T-T--T-TATCT-T--TTT-ACC-AATTCGA--CC--AC-TG-C--A----AACAC-A-AG-GA-TC-AC-AT--C-C-G-TAAA--TG--GTCAATTAATA----A-ATTTG-CTTACC-TT--------AAATA-----C-CC-TCC-CATGTT---C-------CGCG-TCCAC-T-TC-A-T-TCC--A--
gi|14 : caggcaattcTATCAATAA-A-GTAG-A--AG------TATGTGA-----GATATCG-GT-AAAAA------TA-C-----TA-CCAC-T-GAGC-T-T-CGC-G-A-GC-gatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|9 : TATCATTAA-A-GTAGAA--GT------TGTGAGATACTGAGTATCG-TT-AAAAA------TA-C-----TA-CCAC-T-GAGC-T-T-CGC-aaattgccg
gi|15 : ataggagtcggcaattttatatgatcaataaagtagaagtatgcgagatatcggtaaaaatactaccacagagttcggtaTATTAATAA-A-GTAG-A--AA------TACATGA-----GATATGG-GT-AAAAA------TA-C-----TA-TCAG-T-GAGC-T-T-aaatggccgac
gi|9 : ATCAATAA-A-GTAG-A--AG------TATGCGA-----GATATCG-GT-AAAAA------TA-C-----TA-CCA--CAGAG--T-T-CG---------GT--A-GCG--A-aaattgccgacta
gi|2 : ataggagtcggcaattttatatgTCAATAA-A-GTAT-A--AG------TATGCTAA----AATACCG-GT-AAAA-------T--CCTTAGTA-GCACTT-GATC-T-T-CGC-G-A-GCTGT--A-GCG--A-GCGA-AG-C-G-A-C-AG-TA---TGGCAACG-G---TTTTCCAG--AGTT-C-T--T-C-TCT-AG-TCTAACCTAATTCGAC-CC--AC-T--CCAG----AACAC-A-AGAAA-TC-AC-AT--C-C-GTT-AA--T---GTCAATTAATG------ATTC--CTGACC-TT-------C-AGTAGCCCGC-CC-T---CA-GTTTCGC-ACC-T-CGAA-TCCACTT-TT-A-T-TCCATA--TTTTT----C-AAAATT-C-TG-T-TTTATAG-AC-AA-GGGC-C---ATTT--AC---A---CC----CG-T----G--G-A----C-GTCA-C---ATTTTCACC----TGT-AAT-AA---TAagctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
gi|1 : cacaggagtcggcaattttatcaataaagtagaagtatgtgaaatatcggtaaaaatcctagcactgagcgtagcgagcgaagcgacaggatggcaacgtgttttccagattttctctatttacctaattctccaaacacaagaaatcacatcgcgtaaagtgtaatttaatgaattctgaccttaaataccatagttcacctataattcacttttattctatttttcaaaattctgttttgacaagcgcttcgtgtgacgtcacatttactgaagaaaataaaatattatgtttctgcaatatttcagatatttcttatcaatatttatttatacaagactaaatgtaatcatttccaaccaggcgctccaattaagttggaattgtatcctgctcgaaaaatcaatgaatacgacatttcactatctgcctttcaaattccccacaacgcgcaagttcaataagactctcactctcccttattttggaatatgatcatttggattcttacggagacgcatattcggggccccacggtgcttaatttttcatattgtaatacaagaaaaaacagactataatatattgtgatataatttttcttaacataacattatcattcaacttgatggtagtaaaCAATAA-T-G-AG-A--AG------TATGTGA-------TTCCG-GA-AAATA------C--C-----TA--CAC-T-GAAG-TATACGCTG-A-GC-GT--AAGCG--A--CGA-AA-G-G-A-C-AG-GAA--TGGCA-CG-G---TTT-CCAG--A----TGT--T-T-TCT-AAATTT-ACTAAGTTTGATTCCTAAC-TTTC--ACTATATCAC-A-AGCAA-CT-AC-AT--C-C-G-T-TA--TATCGTCAGTTAATGTA--A-ATTGAGCTGACA-TTAATATCACAAACA-----T-CT-T--------T---C-ACC-TATGAA-TC-ACTTGTT-A-T--CC--A--TTCTTATATC-AAAATT-CCTGAT-CTTA--G-AC-AG-CG-C-C---ATTTTTAC---A-ATTTTCTCCG-TAAAGGT-GGA----T-CTCC-CTGTAATT--A-C----T-TAGAA-AA---TAA--TATTA-GTT---TCT---AGTAT-----A---ATTT----T-TATC-AATATTAT-ATGTTATAAAAAATA-TA-AATA-G---ACACGTATACCAATACA-G--C-GAACTCT-AAAGTTT-GTTGGAC-A-TT-T-TCT--ATATGCTGTCGAAAC-CTACAAATGAATA-GA-T-TTTCAACT-GCATA-GTTTAAGATT-CCCCACAA-ATGCAAGT---ATA-G-AT-----AT--CT-C----CCTTTTA-ATTTTGAA-TTA-CATGA-CA-TATTGGTATATAT------CTT-TACGG--AAGCG-AATTATG------CAC-GGT-GAT--A-TTTTTTCAT-ATTTTAGCAGT--ATAAT--AAAAAAATTAA-------CAA--AGAC-TATGATATTATTTGGTAA---ATA--TTTTTTT--A--A----AAT---A-TA--CG-----A-----TAT-ATTATCA-ACTTG--AT----G-TAAAAT--AAT-----AT---C-TACATGTCGT--A------GT-CA--G---T--A-C----GCG-GCA-----T-T---GT--AT--TGG--GT--T-TGTT-C-AAA-A-CAG-AGTTTT-GA---AAAA-ATGG-AATAA-AGGTGGATT-CG-A-GTG---GAAA-C-TG-T-G-G-----A-G---TATTAA-G-GGTAGA-G--AATTT-T----CATTAATTAACA--A--TT-A-CG-G--AT-GTG-ATTT-TT-GTG-TTTGG----A-G---GG--TCAAATTA-GT---AA---A-A-AAG-AA-GA---TAACTGGAAAAAATCACGTTGCCAATCT-C-GT-GTT-C-GTCT-TCGC-TTCCGC-TTAAC-GC-T-C-GCG-AA-CTCA-G-T-G-------AGGAGTA------TGTTTAAC-CAGAC-A---------------A-T-AC--TTCTACTTACGACTTTTAT----ATTG-----A-T-A--A--AAAT--GCCGACTataacaagttgcgactcc
gi|16 : ctggcaattatttaATAA-A-GTAG-A--AG------TA-ATGA-----AATATCGCGT-AAAAA------T--CC----TA-GCAC-T-GAGC-T-T-CGT-G-A-GC-GT--A-c
gi|1 : --T-GAG--T-T-CGC-G-A-GC-GTTAA-GCGGAA-GCGA-AGAC-G-AAC-AC-GAGATTGGCAACGTGATTTTTTCCAGTTA----TCT--T-C-TTT----TTT-AC-TAATTTGA--CC--CT-C--C--A----AACAC-A-AA-AA-TC-AC-AT--C-C-G-T-AAT-T---GTTAATTAATGAA--A-ATTCT-CTACCC-TT---------AATA-----CTCC-A---CA-GTTTC-C-A-C-T-CGAA-TCCACCT-TT-A-T-TCC--AT-TTTTT----C-AAAACT-C-TG-T-TTT---GAACAAA-C--C-C---A-AT--AC---A-ATGC----CG-C----GT---A----C--TGA-C------T--A-CGACATGTAGAT-AT---T---ATTTTACATCAAGTTGAT-AATATATCGTAT--ATTT---TA-AAAA-AATATT-T-A--CCA--AATAATA-Tc
gi|5 : ctggcaattatttacaataatgagaagtatgtgattccggaaaatacctacactgaagtatacgctgagcgtaagcgacgaaaggacaggaatggcacggtttccagatgttttctaaatttactaagtttgattcctaactttcactatatcacaagcaactacatccgttatatcgtcagttaatgtaaattgagctgacattaatatcacaaacatctttcacctatgaatcacttgttatccattcttatatcaaaattcctgatcttagacagcgccatttttacaattttctccgtaaaggtggatctccctgtaattacttagaaaataatattagtttctagtataatttttatcaatattatatgttataaaaaatataaatagacacgtataccaatacagcgaactctaaagtttgttggacattttctatatgctgtcgaaacctacaaatgaatagattttcaactgcatagtttaagattccccacaaatgcaagtatagatatctcccttttaattttgaattacatgacatattggtatatatctttacggaagcgaattatgcacggtgatattttttcatattttagcagtataataaaaaaattaacaaagactatg-GCG--ACGCGA-AG-C-G-A-CCAG-GA---TGGCAACGTG---TGTTCCAG--A----T-T--T-C-TTT-A--TTT-ACCTAATTCGA--CC--AA-T--CC-A----AACAC-A-AG-AAATC-AC-ATATC-C-GCT-AA--T---GTCAATTAATG----A-ATTC--CTGACCATT-------CAA--------C-CC-T---CA-GTT---C-ACC-T-GGAA--CCACTT-TT-AGT-CCC--A--TTTTTT---C-AAAATTTC-TG-T-TTT---G-AC-AA--GGC-C---ATTT--AC---A-ATCA----CG-TC---GT-G-AT---C-GTCA-C---ATT-----C----TGTAAG---A---TAA----------T---TTTAT-AGCATTCCAGATTGATGTAGGCC-TAT-----ATT-T-AT-TTA--AAAAAAA-TA---------------T-TACCACAATA-gtgaggagtatgtttaaccagacaatacttctacttacgacttttatattgataaaaatgccgactc
gi|6 : gagtcggcgtaatttttatcaataaagtagaatgtaatgtgaaattatggtgaaaaattccgagcgactgagctcgcgaggtagcgagcgaagcgacaggaatggcaagtttttccagaatttttcctctatttactaattcgacactcagaacacagaaaatccacatccgtatgtcaatatgatattctgattaaatccccatgttcacctagaaattcactttatgtctattttttcaaattctgtttgacaacggctgcaatttgaccagaatttcggtgtgaaagtcgtcacgatttactggtaataaacatcaaatattatgttttgtaatatttcagatttcttataatattccatgttaaagaatatataatgacttaccaaacaggccgctcaaaagttgttggacattttcctcatgcctcgaaacatcaatgaatccgaagtttactatttgcttcaaattccccacaaacgcaagtataaattatctcccctttatttttgaatatttacacatttgatatcattaccgccgaacgaatctgcactggtgatatttttttatatgtatataaaaaaataacgagacatataATAA-A-TAT-TGATAAGAAATA--TCT--------------GAA---A-TA--T------------TAC-A-GA--A-ACATA--AT----A-TTT--T--ATT-----AT---T-TACA----GT--AAAT---GT-GAC-G---TC-A-C----ACG-A-AA----T-T---GT-AAA--TGGCCGC--T-TGTC-A-AAA---CAG-AATTTT-GA---AAAA-ATGGAA-TAA-AAGTGGATT-CG-AGGTG---G--AAC-TG-A-G-G-----G-G---TATTGA---GGTCAG-G--AA--T-T----CATTAATTGAC---A--TT-A-CG-G--AT-GTG-ATTTCTT-GTGTTT-GG----A-GT--GG--TCGAATTAGGT---AAA--T-A-GAG-AA-AA---T--CTGGAAAA---CACGTTG-CA---T-C-CT-G-T-C-G-CT-TCGC-T--CGC-T--AC-GC-T-C-GCG-AAGCTCA-G-T-GC-T----AGG---A------TTTTT-AC-C-GAT-AT-T-------TCA-CA-T-AC--TTCTAC--------TTT------ATTG-----A-T-A--A--AATT--GCCG
gi|3 : aa---ATA--TTTT--------A---TAAC---A-TAAATATT---GAATCAGAA-A-TATTA-ACA-G--AA----A-CATAAT--ATTTATTGAT---C-TACA-----T--AAAT---GTTGAC-G---TGCAAC----ACG-G-AA----TGT---GT-AAA--TG--CGC--TGTGTC-A-AA----CAG-AGTT---GAC--AAAA-ATGGAA-TAA-AGG--GATC-GG-AGGGG---A--A-C-TG-----T-----G-G---TATTTAGA-GGTC-G-G--AA--T-TTTTCCATTA--TGAC---A--TT-A-CG-G--AT-GTG-ATTTCTTCGTG-TTTGG----A-GT--GG--TCGGA--AGGTA--AA---TGA-GAG-AAGAA---T--C-GGGAAA---CACG-TGCCA---T-C-CT-G-T-CAG-CT-TC------CGC-T--AC-GC-TCC-GCG-AAGCTCA-G-T-GG-T----AGT---AAT----TTTTT-AC-C-GA-------------TC--CA-T-CCTTTTTTAC--------TTT------ATTG-----A-T-A--A--AATT--GCCGACTgttaaaaaatataatgaacttaccaacagccgctccaaagttgttggacattttccatgcctcgaaacatcaaatgaatatgaatttcactatctgctttcaaattccccacaaacgcaagtataagattatatctccctttattttttgaatagttgacatttggatatcatgtacggagacgatatagcacaggtgt
gi|1 : gg---ATA--TTTTTT------A---TAAC---A-TA--TAATATTGA----TAA-A-AATTATACTAG--AA----A-C-TAAT--ATT-----ATTTTC-TA-A----GT--AATTACAGG-GAG-A---TCCA-CCTTTACG-G-AGAAAAT-T---GT-AAAAATGGC-GC--T--GTC-T-AAG-ATCAGGAATTTT-GATATAAGA-ATGGA--TAACAAGTG-ATT-CATAGGTG---A--A-A--G-A-T-GTTTGTG-A---TATT-A-A-TGTCAG-CTCAA--T-TTA--CATTAACTGACGATA--TA-A-CG-G--AT-GTA-GTTGCTT-GTGATATAGTGAAA-GTTAGGAATCAAACTTAGT---AAATTT-A-GAA-AA-CA---T--CTGG-AAA---C-CG-TGCCAT--T-C-CT-G-T-C-C-TT-TCG--T--CGCTT--AC-GC-T-CAGCGTATACTTCAG-T-G--T----AGGT--A------TTTT---C-C-GGA-A----------TCA-CA-T-AC--TTCT-C--------ATT------ATTG-------T-A--AATAATT--GCCaaatgaacttacaaacagccgctccaaagttgttggaccattttcaatgccccgaaacatcaaatggatacgaactttcactgctccaaattccccacaacgagataaaatttatctcccttttatttttgaaatattgacattggatatatccattattacggagacgatatttgcacggttgatattgttatatcatgttaatcataaaaaaaattaacaaagactatatatattggtaatatttttttaaatctaacccaatatacttaccatatttgatgttaaaaactatcctacagtaaattgtgaccgtcaccacggattggaatgccgcttgtccaaacacagagtttttgaaaaacatggaaggaaaagtgcggagggaactgtacggggtaattaaggtcaggaattcattaattgacattaccggatagtagttttctgtgttttggacgtggtcgaataagtaaaatagagaaaaatctggaaaacacgttgccatcctgtacgctctcgctcgctgacgcatcgcgaaagctcagtgtagtattttttaccgatcactactttctactttatgtttattgataaaattgccgactc
gi|5 : ct-ATTTG--AT----G-T-T--T--ATT-----AC---C----A----GT--AAATC--GT-GAC-GACTTTCA-C----ACC-G-AAA---T-TCTGGTCAAA--TTGCAGCCGT-TGTC-A-AA----CAG-AATTT--GA---AAAA-ATAGACATAA-A-GTGAATTTCT-AGGTG---A--A-C----A-T-G-----G-G---GATTTA-A---TCAG----AA--TAT----CAT--ATTGAC---A--T--A-CG-G--AT-GTGGATTTTCT-GTGTTCTG-----A-GT--G---TCGAATTAGTA---AA---T-A-GAG-GA-AAAATT--CTGGAAAA----AC-TTGCCA---TTC-CT-G-T-C-G-CT-TCGC-T--CGC-T--AC--C-T-C-GCG--AGCTCA-G-TCGC-T----CGG---AAT----TTTTC-AC-C--ATAAT-T-------TCA-CATT-ACA-TTCTAC--------TTT------ATTG-----A-TAA--A--AATTACGCCGACTaaatagacacgtataccaatacagcgaactctaaagtttgttggacattttctatatgctgtcgaaacctacaaatgaatagattttcaactgcatagtttaagattccccacaaatgcaagtatagatatctcccttttaattttgaattacatgacatattggtatatatctttacggaagcgaattatgcacggtgatattttttcatattttagcagtataataaaaaaattaacaaagactatgatattatttggtaaatatttttttaaaatatacgatatattatcaacttgatgtaaaataatatctacatgtcgtagtcagtacgcggcattgtattgggtttgttcaaaacagagttttgaaaaaatggaataaaggtggattcgagtggaaactgtggagtattaagggtagagaattttcattaattaacaattacggatgtgatttttgtgtttggagggtcaaattagtaaaaaagaagataactggaaaaaatcacgttgccaatctcgtgttcgtcttcgcttccgcttaacgctcgcgaactcagtgaggagtatgtttaaccagacaatacttctacttacgacttttatattgataaaaatgccgactc
gi|7 : gATAATTTATT-----AT---C-TACA----GT--AAAT---GT-GTC-G---TC-A-C----ACG-A-AA----T-T---GT-AAA--TGGCCGC--T-TGTC-A-AAA---CAG-AATTTT-GA---AAAA-GTAGAA-TAA-AAGTGGATT-CG-AGGGG---G--AAC-TG-A-G-G-----G-G---TATTGA-A-GGTCAG-G--AA--T-T----CATTAATTGAC---A--TT-A-CG-G--AT-GTG-ATTTCTT-GTGTTT-GG----A-GT--GG--TCGAATTAGGT---AAA--T-A-GAG-AA-AA---T--CTGGAAAA---CACGTTGCCA---T-C-CT-G-T-C-G-CT-TCGC-T--CGC-T--AC-GC-T-C-GCG-AAGCTCA-G-T-GC-T----AGG---A------TTTTT-AC-C-GAT-AT-T-------TCA-CA-T-AC--TTCTAC--------TTTA------TTG-----A-T-A--A--AATT--GCCGACTCCTattatgttttgtaatatttcagatttcttataatattccatgttaaagaatatataatgacttaccaaacaggccgctcaaaagttgttggacattttcctcatgcctcgaaacatcaatgaatccgaagtttactatttgcttcaaattccccacaaacgcaagtataaattatctcccctttatttttgaatatttacacatttgatatcattaccgccgaacgaatctgcactggtgatatttttttatatgtatataaaaaaataacgagacatatatattgtggtaatattttttttaaataaatataggcctacatcaatctggaatgctataaaattatcttacagaatgtgacgatcacgacgtgattgtaaatggccttgtcaaaacagaaattttgaaaaaatgggactaaaagtggttccaggtgaactgagggttgaatggtcaggaattcattaattgacattagcggatatgtgatttcttgtgtttggattggtcgaattaggtaaataaagaaatctggaacacacgttgccatcctggtcgcttcgcgtcgc
gi|2 : cacT--ATT-----TT---C-TTCA----GT--AAAT---GT-GAC-G---T-CA-C----ACG-A-A-----------G-----------CGC--T-TGTC---AAA-A-CAG-AATTTT-GA---A-AA-ATAG-AATAA-AAGTGAATT-AT-AGGTG---A--A-C-T----A-T-----G-G---TATTTA-A-GGTCA--G--AA--T-T----CATTAAATTAC---ACTTT-A-CGCG--AT-GTG-ATTTCTT-GTG-TTTGG----A-----------GAATTAGGTA--AA---T-A-GAG-AA-AA---T--CTGGAAAA---CACGTTGCCA---T-C-CT-G-T-C-G-CT-TCGC-T--CGC-T--AC-GC-T-C-A-----------G-T-GC-T----AGG---A------TTTTT-AC-C-GAT-AT-T-------TCA-CA-T-AC--TTCTAC--------TTT------ATTG-----A-T-A--A--AATT--GCCGACTCCTtatgtttctgtaatatttcagatatttctatatcaaatatatatgttaaaaatatagaatgacgtacttaccaaacagccgctccaaattgttggacatttttccatgcctcgaaacaatcaaatgaatacgaatttcactaatctgctttcaaattccccacaaacgcaagtataagtatgcgtttctcctttcccttattttttgaattattgaaattttggatat
gi|8 : cac-AAGTGGACG-CG-----G---A--A-CATG-G-GAG-----G-G---TATTTA-A-GGTAAGCA--AA--T-T----TATTAATTGACC--A--TTTA-CG-G--AT-GTG-ATC-CTT-GTGTTT-GC----A-GT--GG--TCGAATT-GGT---AA---A-AAGAT-AA-AA---T--CTGG--AA---CACGTTGCCA---T-CACT-A------------GC-C--CGC-T--TC-GC-C-T-GCG-AAGCTC--A-T-GTGT----AAT---AATTTTTTTTTT-AC-C-GAT-AT-C-------T-A-C--T-AA------AC--------TGTT-----ATTG-----A-T-A--G--AATT--GCCaaatattatgtttctgcaatatttcagatatttcttatcaatatttatttatacaagactaaatgtaatcatttccaaccaggcgctccaattaagttggaattgtatcctgctcgaaaaatcaatgaatacgacatttcactatctgcctttcaaattccccacaacgcgcaagttcaataagactctcactctcccttattttggaatatgatcatttggattcttacggagacgcatattcggggccccacggtgcttaatttttcatattgtaatacaagaaaaaacagactataatatattgtgatataatttttcttaacataacattatcattcaacttgatggtagtaaatattattacaggtgaaaatgtgacgtccacgggtgtaaatggcccttgtctataaaacagaattttgaaaaatatggaataaaagtggattcgaggtgcgaaactgagggcgggctactgaaggtcaggaatcattaattgacattaacggatgtgatttcttgtgttctggagtgggtcgaattaggttagactagagaagaactctggaaaaccgttgccatactgtcgcttcgctcgctacagctcgcgaagatcaagtgctactaaggattttaccggtattttagcatacttatactttattgaataacaagttgcgactcc
gi|9 : ca-T--CGC-T--AC---------CG-AA-CTCT-G-T-GG-T----AGT---A------TTTTT-AC-C-GAT-AT-C-------TCG-CA-T-AC--TTCTAC--------TTT------ATTGATCATA-T-A--A--AATT--GCCGACTCCTcattccagatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|16 : at-T--AC-GC-T-C-ACG-AAGCTCA-G-T-GC-T----AGG---A------TTTTT-ACGC-GAT-AT-T-------TCA-T--T-AC--TTCTAC--------TTTA-----agctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
gi|14 : a-GC-T-C-GCG-AAGCTCA-G-T-GG-T----AGT---A------TTTTT-AC-C-GAT-AT-C-------TCA-CA-T-AC--TTCTAC--------TTT------ATTG-----A-T-A--A--AATT--GCCGc
gi|13 : -C-GCA-AAGTTC--A-C-GT-------GT---A------TATAT-GC-C-CAT-TT-T-------GCA-CA-T-AT--TCCTAT--------TCTA------CTG-----A-T-A--A--AATT--GCCGACTCCT
gi|9 : t-GCG-AAGCTCA-G-T-GG-T----AGT---A------TTTTT-AA-C-GAT-AC-TCAGTATCTCA-CA---AC--TTCTAC--------TTTA-----A-TG-----A-T-A--A--AATG--GCCGAC
gi|15 : ataggagtcggcaattttatatgatcaataaagtagaagtatgcgagatatcggtaaaaatactaccacagagttcggta-AAGCTC--ACT-GA-T----AGT---A------TTTTT-AC-C-CAT-AT-C-------TCA-TG-T-AT--TTCTAC--------TTT------ATTA-----A-T-A--A--AATT--GCCGACT
gi|12 : ----AGGT--A------TTTAT-GC-C-CAT-TT-T-------TCA-CA-TGGT--TTCTAT--------TCTT-----ACTG-----ATT-A--A--AATT--G-CGACTCCTa
gi|11 : ac---A------TTTTC-AC-C-CAT-ATCT-------TT-----T-AT--TTCTAC--------TTTA------TTG-----A-T-G--A--AATT--GCCAACTACTgagaacttt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAATCCCTTGCAAAGATGCAAAACTTGCTTCCACATTTATTCTTGAAATATTGAAATCGAATACATCTAATAAACGAAAATGAT
Alignments
lowQualScore : 11 11 22222222 111 1 2222 1111 111 1111 1111 222222222 1 111111 1 1 1111 11 11 11111111 11111 1111 1111 1 1111 111 111 1 11111111 1 22 11111 3 111 22222 1111 1 1 1 111 111 111 111111 111111 1 1111 2222222 11 1 4444444 11 22 111 1111 11 11 1111111111 1111 33333 1 1 11 1111 1 222222222222 2 1 11111 1 1 1 111 111 22222 111 1 11 1111 333 11111 111 111 11 22222222222222 1111111 11111111 222222 11111
lowQualScore : 5 11 5 00 5 5 11111111 5 1 5 5 000 5 5 5 5 5 0 3 2 5555 5 66 5 5 66 0 66 66 5 0000 5 0 5 5 5 66 333 2 7777 5 3333 999999999 0 555555 0 3 5 5 0 5 5 0 2222 5 5 00 11 3 77777777 5 00000 2222 1 5 2222 1 5 2222 5 555 5 1 5 000 1 1 5 5 0 5 5 5 5 77 5 1 5 88888888 5 5 1 5 55 77 5 66 77 5 5 5 5 11111 5 5 5 1 666 5 5 5 0 2 55 000 5 33333 77 7777 7 1 5 1 111 5 777 000 666666 3 6 99 6 3 22 999999 3 6 2222 55 88 6666666 99 6 9999999 11 22 0 333 7777 8 11 0 0 11 8888888888 7777 0 00000 6 8 0 11 7777 8 1 1 8 8 777777777777 8 3 8 8 44 0 33333 0 6 6 3 5 8 0 444 222 22222 1 8 111 8 8 6 99 3 0 0 1111 0 3 333 88 33333 444 0 444 8 8 8 8 8 6 99 55 5 5 4 333 33333333333333 3 3 3 3 0000000 3 3 2 3 3 22222222 111111 22222 3 55
lowQualScore : . .. . .. . . ........ . . . . ... . . . . . . . . .... . .. . . .. . .. .. . .... . . . . . .. ... . .... . .... ......... . ...... . . . . . . . . .... . . .. .. . ........ . ..... .... . . .... . . .... . ... . . . ... . . . . . . . . . .. . . . ........ . . . . .. .. . .. .. . . . . ..... . . . . ... . . . . . .. ... . ..... .. .... . . . . ... . ... ... ...... . . .. . . .. ...... . . .... .. .. ....... .. . ....... .. .. . ... .... . .. . . .. .......... .... . ..... . . . .. .... . . . . . ............ . . . . .. . ..... . . . . . . . ... ... ..... . . ... . . . .. . . . .... . . ... .. ..... ... . ... . . . . . . .. .. . . . ... .............. . . . . ....... . . . . . ........ ...... ..... . ..
lowQualScore : 0 99 0 11 0 0 66666666 0 4 0 0 111 0 0 0 0 0 0 2 0 6666 0 99 0 0 99 4 99 99 0 6666 0 1 0 0 0 99 888 2 5555 0 2222 111111111 0 444444 0 1 0 0 2 0 0 0 1111 7 7 77 66 0 44444444 7 11111 1111 4 7 1111 4 7 1111 7 777 7 7 7 000 4 7 7 0 7 7 7 7 7 99 7 4 7 11111111 7 4 4 7 00 99 7 44 99 7 7 7 7 66666 7 7 7 7 111 7 7 7 1 9 99 000 7 77777 99 9999 1 4 7 4 666 7 333 000 444444 5 7 22 7 5 77 222222 3 7 6666 22 88 0000000 00 0 0000000 00 00 8 222 0000 0 00 8 8 00 8888888888 2222 8 88888 0 0 6 00 0000 0 2 4 0 0 222222222222 0 2 0 2 66 0 00000 8 0 0 6 6 0 6 000 222 00000 0 0 888 0 0 0 00 2 8 8 8888 8 2 000 88 00000 000 8 000 0 0 0 0 0 7 22 88 7 7 0 999 99999999999999 3 3 3 3 8888888 3 3 4 3 3 11111111 222222 77777 6 00
consensus : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TC-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATT--C-CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTT----TCAAAATT-CTG-TTTT-GACAA-CGGC-C---A--TTT-AC---A-AT----TTCG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGT--TAAAAAATA-TA-AATG-A---AC---T-TACCAAAACA-GC-CG--CT-CCAAAG-TT--GTTGGA-CA-TT-T-TC--C--ATGCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTC-ACT-ATCTG-CTTTCAAATT-CCCCACAA-ACGCAAGT---ATAAG-A-T---TAT--CTC----CC-TTTA-TTTTTG-AA-TA-T-TGA-CA-T-TTGG---AT------ATCAT-TACGG--AGACG-ATATNTG------CAC-GG-TGAT--ATTTTTTTTAT-AT-------GT--AT-ATAAAAAAA-T-AA--CAA--AGACTATAN-ATA----T-TG--GTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-CA-TATCAACTTG--AT----G-TANAATATTAT-CT-ACA----GT--AAA-TGTGA-CGTCCAC-GCGG-ATTGTAAATGGCCGCTTGT-C-A-AAAACAGAA-TTTTGAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CGGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGGTAA-AATAGAG-AAAA--T--CTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
Reference ( family-3545 ) : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TACT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TC-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATT--C-CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTT----TCAAAATT-CTG-TTTT-GACAA-CGGC-C---A--TTT-AC---A-AT----TCCG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGT--TAAAAAATA-TA-AATG-A---AC---T-TACCAAAACA-G--CG--CT-CCAAAG-TT--GTTGGA-CA-TT-T-TC--C--ATGCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTC-ACT-ATCTG-CTTTCAAATTCCCCCACAA-ACGCAAGT---ATAAG-A-T---TAT--CTC----CC-TTTA-TTTTTG-AA-TA-T-TGA-CA-T-TTGG---AT------ATCAT-TACGG--AGACG-ATATNTG------CAC-GG-TGAT--ATTTTTTTTAT-AT-------GT--AT-ATAAA-------AA--CAA--AGACTATAA-ATA----T-TG--GTAAATA--TTTTTTT--A--A---TAAC---ATATAG--CTA-CA-TATCAACTTG--AT----G-TATAATATTAT-CT-ACA----GT--AAA-TGTGA-CGTCCAC-ACGGAATTGTAAATGGCCGCTTGT-C-A-AAAACAGAA-TTTTGAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTNAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CGGAT--GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGGT---AATAGAG-AAAA--T--CTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
gi|1 : CAATAA-TG-AGAA--GTA-TGTGA---T-TCCGG---AAAA------TACC-TAC-AC-TGAAGTATACGCTG-AGCGTAAGCGA-CGAAAG-GACAG-GAATGGCA-CG-GTTT-CCAGA----TGT--TT-TCT-AAATTTACTAAGTTTGATTCCTAACTTTCACTATATCAC-AAGCAACT-ACATC-CGT-TA--TATCGTCAGTTAATGTA--A-ATTGAG-CTGACATTAATATCACAAACA-TCT-------TT-CACCTATGAA-T-CACTTGTTA--TCCA-TTCTTATATCAAAATTCCTGATCTTAGACAG-C-GC-C---ATTTTT-AC---A-ATTTTCTCCG-TAAAGGTGG-A----TCTCC-CTGTAATTACT--TAGAA-AA---T--AATATTA-GTTTC--T-AGTAT---A---ATTT-T-TATC-AATATTAT-ATGTTATAAAAAATA-TA-AATA-G---ACACGTATACCAATACA-G--CGAACT-CTAAAGTTT--GTTGGA-CA-TT-T-TCTAT--ATGCTGTCGAAAC-CTACAAATGAATA-GA-T-TTTCAACT-GCATA-GTTTAAGATT-CCCCACAA-ATGCAAGT---AT-AG-A-----TAT--CTC----CCTTTTA-ATTTTG-AATTA-CATGA-CA-TATTGGTATAT------ATCTT-TACGG--AAGCG-AATTATG------CAC-GG-TGAT--A-TTTTTTCAT-ATTTTAGCAGT--ATAATAAAAAAATT-AA--CAA--AGACTAT-G-ATATTATT-TG--GTAAATA--TTTTTTT--A--A----AAT---ATAC-G--ATA-TATTATCAACTTG--AT----G-TAAAATAATAT-CT-ACATGTCGT--A----GTCA--GT--AC-GCGGCATTGT-ATTGG--GTTTGT-T-C-AAAACAGAG-TTTTGAAAAA-ATGG-AATAAAGGTGGATTCGAGTGGA---AACTG-T-GGA-G---TATTAAG-GGTAGAGAATTTTCATTAATTAACAATT-A-CGGAT--GTGATTT-TTGTG-TTTGGA-G--GGTCAAATTA-GT---AAAAAAG-AAGA--TAACTGGAAAAAATCACGTTGCCAATCTCGT-GTT-CGTCT-TCGC-TTCCGCTTAAC-GC-TCGCG-AA-CTC-A-GTG------A-GGAGT-A-TGTTTAAC-CAGA-------CA--------ATA-C-TTCTACTTACGACTTTTAT----ATTG-----AT-A--AAAATGCCGACTC
gi|11 : ctggcaattatttaCCC-A-ATGCC----ATGGTTGTA-TTTTC-AC-C-CA-------TATCTTT----TA-T-TTCTAC--------TTTA------TTG-----AT-G--AAATTGCCAACTACT
gi|12 : agg-A-GTTCTC---A-GGT---A-TTTAT-GC-C-CA-------TTT-TTCA-CATGGT-TTCTAT--------TCTT-----ACTG-----ATTA--AAATTGC-GACTCCTta
gi|13 : acCGCA-AAGTTC-ACGTGT-------------A-TATAT-GC-C-CA-------TTT-TGCA-CATA-T-TCCTAT--------TCTA------CTG-----AT-A--AAATTGCCGACTCCTtt
gi|14 : t-GC-TCGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCA-CATA-C-TTCTAC--------TTT------ATTG-----AT-A--AAATTGCCG
gi|15 : -AAGCTC-A-CTGAT----A-GT----A-TTTTT-AC-C-CA-------TAT-CTCA-TGTA-T-TTCTAC--------TTT------ATTA-----AT-A--AAATTGCCGACT
gi|16 : T--AC-GC-TCACG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-ACGC-GA-------TAT-TTCA-T-TA-C-TTCTAC--------TTTA-----a
gi|2 : aTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-T------------G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGAT---T-T--TC-TCT-A--TTTACCTAATT----------CTC-CA----AACAC-AAGAAATC-ACATCGCGT-AAAGT---GTAATTTAATG----A-ATT----CTGACCTT--------AAATA-CCAT---A-GTT-CACCT-ATAA-TTCACTT-TTAT-TCTA-TTTT----TCAAAATT-CTG-TTTT-GACAA-GCGC-------------------------TTCG-T----GT-G-A----CGTCA-C---ATTTACTG-AAGAA-AA---TAAAATATTATGTTTCTGC-AATATTTCAGATATTTCT-TATC-AATATT-T-AT-T--TATACAAGACTA-AATGTA---ATCA-T-TTCC-AACCAGG--CG--CT-CCAA---TTAAGTTGGA--A-TTGTATC--C---TG-C-TCGAAAA-AT-C-AATGAATACGACA-TTTC-ACT-ATCTGCCTTTCAAATT-CCCCACAACGCGCAAGTTCAATAAG-A-C---TCTCACTCT---CC-CTTA-TTTTGG-AA-TA---TGATCA-T-TTGG---AT-------TC-T-TACGG--AGACGCATATTCGGGGCCCCAC-GG-TGCTTAATTTTTCATAT--T-------GTA-AT-ACAAG-------AA--AAAACAGACTATAATATA----T-TG--TGATATAATTTTTCTT--AACA---TAAC---AT-------TATCA-T-TCAACTTG--ATGGTAG-TA-AATATTAT--T-ACAG---GTGAAAA-TGTGA-CGTCCAC-G-GG---TGTAAATGGCC-CTTGT-CTATAAAACAGAA-TTTTGAAAAATATGG-AATAAAAGTGGATTCGAG-GTGCGAAACTG-A-GGGCGGGCTACTGAA-GGTCAGGAA---TCATTAATTGAC-ATTAA-CGGAT--GTGATTTCTTGTGTTCTGGA-GTGGGTCGAATTAGGTTAGACTAGAG-AAGAACT--CTGGAAAA---C-CGTTGCCA---TACT-G-T-CG-CT-TCGC-T--CGCT--ACAGC-TCGCG-AAGATCAA-GTGCTACTAA-GG----A--TTTT-AC-C-GG-------TAT-TTTAGCATA-C-TTATAC--------TTT------ATTGA----AT-AACAAGTTG-CGACTCCc
gi|3 : cacaggagtcggcaatttTATCAATAA-AGTAAAAAAGGA-TG-GA------TCGGT-AAAAAAT----TACT-ACC-AC-TGAGCT-T-CGC-GGAGCGTA-GCG---GAAGCTGACAG-GA-TGGCA-CGTGTTTCCC-GA----T-TCTTC-TCTCA--TTTACCT--TCCGA--CC--ACTC-CA----AACACGAAGAAATC-ACATC-CGT-AA--T---GTCA--TAATGGAAAA-ATT--C-C-GACCTC-------TAAATA-CCA---CA-GTT-CCCCT-CCGA-TCC--CT-TTAT-TCCA-TTTT----TGTCAACT-CTG-TTT--GACA--CAGCGC---A--TTT-AC---ACAT----TCCG-T----GTTGCA----CGTCAAC---ATTTA-TG-TAGATCAA---TAAA-TATTATGTTTCTGTTAATATTTCTGAT---------TC-AATATT-T-ATGT--TATAAAATA-TA-AATG-A---AC---T-TAC--AAACA-GC-CG--CT-CCAAAG-TT--GTTGGACCA-TT-T-TC--A--ATGCC-CCGAAAC-AT-CAAATGGATACGA-ACTTTC-A-----CTG-C-TCCAAATT-CCCCACAA----CGAG----ATAAA-ATT---TAT--CTC----CCTTTTA-TTTTTGAAA-TA-T-TGA-CA---TTGG---ATATATCCATTAT-TACGG--AGACG-ATATTTG------CAC-GGTTGAT--A-TTGTTATATCAT-------GTTAATCATAAAAAAAATTAA--CAA--AGACTATAT-ATA----T-TG--GT-AATA--TTTTTTT--A--AATCTAACCCAATATAC--TTACCA-TAT----TTG--AT----G-TTAAAAACTATCCT-ACA----GT--AAATTGTGACCGTCACC-ACGG-ATTG-GAAT-GCCGCTTGTCC-A-AACACAGAGTTTTTGAAAAACATGGAAGGAAAAGTG----CGGA-GGG---AACTGTACGGG-G---TAATTAA-GGTCAGGAA--TTCATTAATTGAC-ATT-ACCGGATA-GTAGTTTTCTGTGTTTTGGACGT-GGTCGAA-TAAGTAA-AATAGAGAAAAA--T--CTGGAAAA---CACGTTGCCA---TCCT-G-TACG-CTCTCGC-T--CGCTG-AC-GCATCGCGAAAGCTC-A-GTG-T----A-GT----ATTTTTT-AC-C-GA------------TCA-C-TA-CTTTCTAC--------TTTATGTTTATTG-----AT-A--AAATTGCCGACTC
gi|4 : ggagtcggcaatttTATCAATAA-AGTAGAG--TTA-TGTGACAAT-ATCGGT-AAAAA------T-CT-AGC-A--TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TC-TCT-A--TTTACCTAATTCGA--CC--ACTC--A----AACAC-AAGAA-TC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATT--C-CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTT----TCAAAATT-CTG-TTTT-GACAA-CGGC-C---A--TTT-AC---A-AT----TTCG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGT--TAAAAAATA-TA-AATG-A---AC---T-TACCAAAACA-G--CG--CTCCCAAAG-TT--GTTGGA-CA-TT-T-TC--C--ATGCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTC-ACT-ATCTG-CTTTCAAATT--CCCACAA-ACGCAAGT---ATAAG-A-T---TAT--CTC----CC-TTTA-TTTTTG-AA-TA-T-TGA-CA-T-TTGG---AT------ATCAT-TACGG--AGACG-ATATATG------CAC-GG-TGGT--ATTTTTTTTAT-AT-------GT--AT-ATAAA-------AA--CAA--AGACTATAA-ATA----TATG--GTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-CA-TATCAACTTG--AT----G-TATAATATTAT-CT-ACA----GT--AAA-TGTGA-CGTCCAC-ACGG-ATTGTAAATGGCCGCTTGT-C-A-AAAACAGAA-TTTTGAAGAA-ATGGAAATAAAAGTGGATTCGAG-GTG---GACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CGGAT--GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGGT---AATAGAG-AAAA--T--CTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC---GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTGCT
gi|5 : TATCAATAA-AGTAGAAT-GTAATGTGA-AATTAT-GGTGAAAAA------TTCCGAGCGAC-TGAGCT---CGC-G-AG-GTA-GCGAGCGAAGC-GACAG-GAATGGCAA-GT-TTTTCCAGAATTTT-T--CC-TCT-A--TTTAC-TAATTCGA--C---ACTC-AG----AACAC-AGAAAATCCACATC-CGT-A---T---GTCAAT--ATG----ATATT--C--TGA---T-------TAAAT---CCC--CATGTT-CACCT-AGAAATTCACTT-T-ATGTCTA-TTTT----TTCAAATT-CTG-TTT--GACAA-CGGC-TGCAA--TTTGACCAGA-AT----TTCGGT----GT-G-AAAGTCGTCA-CG--ATTTACTGGTA-AT-AAACATCAAATATTATGTTT-TGT-AATATTTCAGAT--TTCT-TAT--AATATT-CCATGT--TAAAGAATA-TATAATG-A----C---T-TACCAAA-CA-GGCCG--CT-CAAAAG-TT--GTTGGA-CA-TT-T-TC--CTCATGCC-TCGAAAC-AT-CAA-TGAATCCGA-A-GTTT-ACT-ATTTG-CTT-CAAATTCCCC-ACAA-ACGCAAGT---ATAA--A-T---TAT--CTC----CCCTTTA-TTTTTG-AA-TA-T-TTA-CA-CATTTG---AT------ATCAT-TACCGCCGAACG-A-ATCTG------CACTGG-TGAT--ATTTTTTT-AT-AT-------GT--AT-ATAAA-------AAAATAACGAGAC-ATAT-ATA----T-TGTGGTAA-TA--TTTTTTTTAA--A---TAA----ATATAGGCCTA-CA-T--CAATCTGGAAT----GCTATAAAATTAT-CTTACA----G----AA-TGTGA-CGATCACGACGTGATTGTAAATGGCC--TTGT-C-A-AAA-CAGAAATTTTGAAAAA-ATGGGACTAAAAGTGG-TTCCAG-GTG---AACTG-A-GGG-------TTGAATGGTCAGGAA--TTCATTAATTGAC-ATT-AGCGGATATGTGATTTCTTGTGTTT-GGA-TT-GGTCGAATTAGGTA--AATAAAG--AAA--T--CTGGAACA---CACGTTGCCA---TCCTGG-T-CG-CT-TCGCGT--CGC
gi|6 : gagtcggcgtaattttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-T-GCAACGTGTTTTCCAGAT---T-T--TC-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATT--C-CTGACCTC---------AATACCCCT--CA-GTTCCACCT-CGAA-TCCACTT-TTAT-TCCATTTTT----TCAAAATT-CTG-TTTT-GACAAGCGGC-C---A--TTT-AC---A-AT----TTCG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGT--TAAAAAATA-T--AATG-A---AC---T-TACC--AACA-GC-CG--CT-CCAAAG-TT--GTTGGA-CA-TT-T-TC--C--ATGCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTC-ACT-ATCTG-CTTTCAAATT-CCCCACAA-ACGCAAGT---ATAAG-A-TTA-TAT--CTC----CC-TTTATTTTTTG-AA-TAGT-TGA-CA-T-TTGG---AT------ATCATGTACGG--AGACG-ATATA-G------CACAGG-TG
gi|7 : aacggcaatttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGAT---T-T--TC-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATT--C-CTGACCTT-------C-AATACCCCT--CA-GTTCCCCCT-CGAA-TCCACTT-TTAT-TCTACTTTT----TCAAAATT-CTG-TTTT-GACAAGCGGC-C---A--TTT-AC---A-AT----TTCG-T----GT-G-A----CGACA-C---ATTTACTG-TAGAT-AA---TAAATTATTATGTTTCTGT-AATATTTCAGATATTTCTATATCAAATATA-T-ATGT--T-AAAAATA-TAGAATG-ACGTAC---T-TACC-AAACA-GC-CG--CT-CCAAA--TT--GTTGGA-CATTT-T-TC--C--ATGCC-TCGAAACAAT-CAAATGAATACGA-A-TTTC-ACTAATCTG-CTTTCAAATT-CCCCACAA-ACGCAAGT---ATAAGTA-TGCGTTT--CTCCTTTCC-CTTATTTTTTG-AATTA-T-TGA-AATT-TTGG---AT------ATt
gi|8 : cacaggagtcggcaatttTATCAATAACAGT------TTA--GT-A-GAT-ATCGGT-AAAAAAAAAATTATT-A-C-ACATGAGCT-T-CGC-A-GGCGAA-GCGGGC--------TAGTGA-TGGCAACGTGTT--CCAGA----T-T--TTATCT-T--TTTACC-AATTCGA--CC--ACTG-CA----AACAC-AAG-GATC-ACATC-CGTAAA--TG--GTCAATTAATA----A-ATT--TGCTTACCTT--------AAATA-CCCTCCCATGTT-C-----CGCG-TCCAC-T-TCAT-TCCA-
gi|9 : caggcaattc-T--CGCT--AC-------CG-AA-CTC-T-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCG-CATA-C-TTCTAC--------TTT------ATTGATCATAT-A--AAATTGCCGACTCCTgatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|9 : atGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AA-C-GATACTCAGTAT-CTCA-CA-A-C-TTCTAC--------TTTA-----A-TG-----AT-A--AAATGGCCGACagctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATCCCTTGCAAAGATGCAAAACTTGCTTCCACATTTATTCTTGAAATATTGAAATCGAATACATCTAATAAACGAAAATGAT
Alignments
lowQualScore : 11 11 222222 111 1 2222 1111 111 1111 111 222222222 1 11111 1 1 1111 11 11 11111 11 11111 1111 1111 111111 111 111 1 11111111 1 11 111 22222 1111 111 1 111 1 111 111111 111111 1 11 1 2222222 11 2222 1 2222222 11 1111111111 1111 2222 1111111 11 111 1 22222222 11 222 1 1 111 111 22222 111 22 1 1111 1 11 111 111 11 22222222222222 1111111 11111111 222222 11111
lowQualScore : 5 11 5 00 5 5 111111 5 5 1 5 5 000 555 5 5 5 0 3 2 0000 5 66 5 5 5 66 0 66 66 5 0000 5 0 5 5 5 66 333 2 7777 5 444 999999999 0 33333 0 3 5 5 5 5 0 2222 5 5 00 11 55555 33 00000 2222 5 2222 5 444444 5 555 5 1 5 000 5 5 5 0 5 5 5 5 77 5 1 5 88888888 5 5 1 66 77 5 0 33 5 5 5 5 77 77 5 5 5 1 666 5 55 5 5 55 000 5 11111 77 5 7777 333 1 5 111 5 5 1 000 666666 3 6 99 6 3 22 999999 3 6 11 0 0 88 6666666 99 8 8 0 4444 0 0 999 7777777 0 0 11 8888888888 7777 0 1111 4444444 11 8 8 222 1 6 66666666 0 8 8 3 8 8 88 0 0 00 666 8 8 8 6 3 5 8 0 444 222 22222 8 111 8 8 8 8 88 3 0 1111 0 3 8 0 3 99 444 0 444 8 8 8 8 8 6 99 55 5 5 4 333 33333333333333 3 3 3 3 0000000 3 3 2 3 3 22222222 111111 22222 3 55
lowQualScore : . .. . .. . . ...... . . . . . ... ... . . . . . . .... . .. . . . .. . .. .. . .... . . . . . .. ... . .... . ... ......... . ..... . . . . . . . .... . . .. .. ..... .. ..... .... . .... . ...... . ... . . . ... . . . . . . . . .. . . . ........ . . . .. .. . . .. . . . . .. .. . . . . ... . .. . . .. ... . ..... .. . .... ... . . ... . . . ... ...... . . .. . . .. ...... . . .. . . .. ....... .. . . . .... . . ... ....... . . .. .......... .... . .... ....... .. . . ... . . ........ . . . . . . .. . . .. ... . . . . . . . . ... ... ..... . ... . . . . .. . . .... . . . . . .. ... . ... . . . . . . .. .. . . . ... .............. . . . . ....... . . . . . ........ ...... ..... . ..
lowQualScore : 0 99 0 11 0 0 222222 9 0 4 0 0 111 111 0 0 0 0 2 0 6666 0 99 0 0 0 99 4 99 99 0 6666 0 1 0 0 0 99 888 2 5555 0 444 111111111 0 44444 0 1 0 0 0 0 0 1111 7 7 77 66 11111 66 11111 1111 7 1111 7 666666 7 777 7 7 7 000 1 7 0 7 7 7 7 7 99 7 4 7 11111111 7 4 4 44 99 7 7 66 7 7 7 7 99 99 7 7 7 7 111 7 99 7 0 99 000 7 66666 99 7 9999 999 4 7 666 7 7 4 000 444444 5 7 22 7 5 77 222222 3 7 00 8 6 88 0000000 00 0 0 8 6666 6 8 888 0000000 8 8 00 8888888888 2222 8 4444 6666666 00 0 0 000 4 0 88888888 8 0 0 2 0 0 88 8 8 00 444 0 0 0 0 6 6 0 6 000 222 00000 0 888 0 0 0 0 44 2 6 8888 8 2 0 6 8 00 000 8 000 0 0 0 0 0 7 22 88 7 7 0 999 99999999999999 3 3 3 3 8888888 3 3 4 3 3 11111111 222222 77777 6 00
consensus : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ATATAT--T----GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC-N-AAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
Reference ( family-3545 ) : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ANATAT--T----GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--NAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC-A-AAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAA--TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
gi|1 : CAATAA-TG-AGAA--GTA-TGTGA---T-TCCGG---AAAA------TACC-TAC-AC-TGAAGTATACGCTG-AGCGTAAGCGA-CGAAAG-GACAG-GAATGGCA-CG-GTTT-CCAGA----TGT--T-T-TCT-AAATTTACTAAGTTTGATTCCTAACTTTCACTATATCAC-AAGCAACT-ACATC-CGT-TA--TATCGTCAGTTAATGTA--A-ATTGAGCTGACATTAATATCACAAACA-TCTT-------T-CACCTATGAA-TC-ACTTGTTAT--CCA-TTCTTATATCAAAATTCCTGATCTTAGACAG-CG-C-C---ATTTTTAC---A-ATTTTCTCCG-TAAAGGT-GGA----TCTCC-CTGTAATTACT--TAGAA-AA---TAA--TATTA-GTTTCT---AGTAT-----A-ATTT-T-TATC-AATATTAT-ATGTTATAAAAAATA-TA-AATA-G---ACACGTATACCAATACAG-C-GAACT-CTAAAGTTT-GTTGGAC-A-TT-T-TCT--ATATGCTGTCGAAAC-CTACAAATGAATA-GA-T-TTTCAACT-GCATA-GTTTAAGATTCCCCACAA-ATGCAAGT---ATA-G-AT-----AT--CT-C----CCTTTTA-ATTTTGAA-TTA-CATGA-CA-TATTGGTATATAT------CTT-TACGG--AAGCG-AATTATG------CAC-GGT-GAT--ATTTTTTC-AT-ATTTTAGCAGT--AT-AATAAAAAAA--TTAACAAAGACTAT--GATAT--TATTTGGTAAATA--TTTTTTT--A--A----AAT---ATACGA---TA-T-ATTATCAACTTG--AT-G-TA--AAATAATATC-TACATGTCGT--A----GTCA--GT--ACG-CG-GCATTGTAT-TGG--GTTTGTT-C-AAA-ACAG-AGTTTT-GAAAAA-ATGG-AATAAAGGTGGATTCGAGTGGA---AACTG-T-GGA-G---TATTAAG-GGTAGAGAATTTTCATTAATTAACAATT-A-C-GGAT--GTGATTT-TTGTG-TTTGGA-G--GGTCAAATTA-G-TAAAAAAGAAGATA--ACTGGAAAAAATCACGTTGCCAATCTCGT-GTT-CGTCT-TCGC-TTCCGCTTAAC-GC-TCGCG-AA-CTC-A-GTG------A-GGAGT-A-TGTTTAAC-CAGA-------CA--------ATA-C-TTCTACTTACGACTTTTAT----ATTG-----AT-A--AAAATGCCGACTC
gi|11 : ctggcaattatttaCCC-A-ATGCC----ATGGTTGTA-TTTTC-AC-C-CA-------TATCTTT----TA-T-TTCTAC--------TTTA------TTG-----AT-G--AAATTGCCAACTACT
gi|12 : agg-A-GTTCTC---A-GGT---A-TTTAT-GC-C-CA-------TTT-TTCA-CATGGT-TTCTAT--------TCTT-----ACTG-----ATTA--AAATTGC-GACTCCTta
gi|13 : acCGCA-AAGTTC-ACGTGT-------------A-TATAT-GC-C-CA-------TTT-TGCA-CATA-T-TCCTAT--------TCTA------CTG-----AT-A--AAATTGCCGACTCCTtt
gi|14 : t-GC-TCGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCA-CATA-C-TTCTAC--------TTT------ATTG-----AT-A--AAATTGCCG
gi|15 : -AAGCTC-A-CTGAT----A-GT----A-TTTTT-AC-C-CA-------TAT-CTCA-TGTA-T-TTCTAC--------TTT------ATTA-----AT-A--AAATTGCCGACT
gi|16 : T--AC-GC-TCACG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-ACGC-GA-------TAT-TTCA-T-TA-C-TTCTAC--------TTTA-----a
gi|2 : aTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGC-------------GTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TTC-TCT-A--TTTACCTAATTC----------TC-CA----AACAC-AAGAAATC-ACATCGCGT-AAAGT---GTAATTTAATG----A-ATTC---TGACCTT--------AAATA-CCAT---A-GTT-CACCT-ATAA-TTCACTT-TTAT-TCTA-TTTTT----CAAAATTC-TG-TTTT-GACAA-GCGC--------------------TT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-AAGAA-AA---TAAAATATTATGTTTCTGC-AATATTTCAGATATTTCT-TATC-AATATT-T-AT-TTA--TACAAGACTA-AATGTA---ATCA-T-TTCC-AACCAG-GCG--CT-CCAA--TTAAGTTGGA--A-TTGTATCC---T--G-C-TCGAAAA-AT-C-AATGAATACGACA-TTTCA-CT-ATCTGCCTTTCAAATTCCCCACAACGCGCAAGTTCAATAAG-AC---T-CTCACT-CT---CCCTT-A-TTTTGGAA-T-A---TGATCA-T-TTGG---AT-T------C-T-TACGG--AGACGCATATTCGGGGCCCCAC-GGT-GCTTAATTTTTCATAT--T-------GTA-AT-A-CAAGAAAA----AAC--AGACTATAATATAT--T----GTGATATAATTTTTCTT--AACA---TAAC---AT-------TATC-AT--TCAACTTG--ATGG-TAGTAAATATTAT--TACAG---GTGAAAAT-GTGAC-GTCCACG--G-G---TGTAAATGGCC-CTTGTCTATAAA-ACAG-AATTTT-GAAAAATATGG-AATAAAAGTGGATTCGAG-GTGCGAAACTG-A-GGGCGGGCTACTGAA-GGTCAGGAA---TCATTAATTGAC-ATTAA-C-GGAT--GTGATTTCTTGTGTTCTGGA-GTGGGTCGAATTAGGTTAGACTAGAGAAGAACTCTGGAAAA---C-CGTTGCCA---TACT-G-T-CG-CT-TCGC-T--CGCT--ACAGC-TCGCG-AAGATCAA-GTGCTACTAA-GG----A--TTTT-AC-C-GG-------TAT-TTTAGCATA-C-TTATAC--------TTT------ATTGA----AT-AACAAGTTG-CGACTCCc
gi|3 : cacaggagtcggcaatttTATCAATAA-AGTAAAAAAGGA-TG-GA------TCGGT-AAAAAAT----TACT-ACC-AC-TGAGCT-T-CGC-GGAGCGTA-GCG---GAAGCTGACAG-GA-TGGCA-CGTGTTTCCC-GA----T-TCTT-C-TCTCA--TTTACCT--TCCGA--CC--ACTC-CA----AACACGAAGAAATC-ACATC-CGT-AA--T---GTCA--TAATGGAAAA-ATTC--C-GACCTC-------TAAATA-CCA---CA-GTT-CCCCT-CCGA-TCC--CT-TTAT-TCCA-TTTTT----GTCAACTC-TG-TTT--GACA--CAGCGC---ATTT--AC---ACATTC----CG-T----GTTGCA----CGTCAAC---ATTTA-TG-TAGATCAA---TAAA-TATTATGTTTCTGTTAATATTTCTGAT---------TC-AATATT-T-ATGTTA--TAAAATA-TA-AATG-A---AC---T-TAC--AAACAG-CCG--CT-CCAAAGTT--GTTGGACCA-TT-T-TCA--AT--GCC-CCGAAAC-AT-CAAATGGATACGA-ACTTTCA-CT-----G-CTC-CAAATTCCCCACAA----CGAG----ATAAA-AT---TTAT--CT-C----CCTTTTA-TTTTTGAAAT-A-T-TGA-CA-T-T-GG---ATATATCCATTAT-TACGG--AGACG-ATATTTG------CAC-GGTTGAT--ATTGTTAT-ATCAT-------GTTAATCA-TAAAAAAAATT-AACAAAGACTAT-ATATAT--T----GGTAA-TA--TTTTTTT--A--AATCTAACCCAATATA--CTTA-CCAT-AT----TTG--AT-G-TT--AAAAACTATCCTACA----GT--AAATTGTGACCGTCACCA-CG-G-ATTG-GAATG-CCGCTTGTC-C-AAACACAG-AGTTTTTGAAAAACATGGAAGGAAAAGTG----CGGA-GGG---AACTGTACGGG-G---TAATTAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CCGGATA-GTAGTTTTCTGTGTTTTGGACGT-GGTCGAAT-AAG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-TACG-CTCTCGC-T--CGCTG-AC-GCATCGCGAAAGCTC-A-GTG-T----A-GT----ATTTTTT-AC-C-GA------------TCA-C-TA-CTTTCTAC--------TTTATGTTTATTG-----AT-A--AAATTGCCGACTC
gi|4 : ggagtcggcaatttTATCAATAA-AGTAGAG--TTA-TGTGACAAT-ATCGGT-AAAAA------T-CT-AGC-A--TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC--A----AACAC-AAGAA-TC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG--CG--CTCCCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATT-CCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATATG------CAC-GGT-GGT--ATTTTTTTTAT-AT-------GT--AT-A-TAAA--------AACAAAGACTAT-AAATATA-T----GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--TAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACA-CG-G-ATTGTAAATGGCCGCTTGTC-A-AAA-ACAG-AATTTT-GAAGAA-ATGGAAATAAAAGTGGATTCGAG-GTG---GACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGAT--GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-T--AATAGAGAAAA--TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC---GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTGCT
gi|5 : TATCAATAA-AGTAGAAT-GTAATGTGA-AATTAT-GGTGAAAAA------TTCCGAGCGAC-TGAGCT---CGC-G-AG-GTA-GCGAGCGAAGC-GACAG-GAATGGCAA-GT-TTTTCCAGAATTTT-T--C-C-TCT-A--TTTAC-TAATTCGA--C---ACTC-AG----AACAC-AGAAAATCCACATC-CGT-A---T---GTCAAT--ATG----ATATTC---TGA---T-------TAAAT---CCC--CATGTT-CACCT-AGAAATTCACTT-T-ATGTCTA-TTTTT----TCAAATTC-TG-TTT--GACAA-CGGC-TGCAATTTG-ACCAGA-ATTT----CGGT----GT-G-AAAGTCGTCA-CG--ATTTACTGGTA-AT-AAACATCAAATATTATGTTT-TGT-AATATTTCAGAT--TTCT-TAT--AATATT-CCATGTTA--AAGAATA-TATAATG-A----C---T-TACCAAA-CAGGCCG--CT-CAAAAGTT--GTTGGAC-A-TT-T-TCCTCAT--GCC-TCGAAAC-AT-CAA-TGAATCCGA-A-GTTTA-CT-ATTTG-CTT-CAAATTCCCCACAA-ACGCAAGT---ATAA--AT---T-AT--CTCC----CCTTT-A-TTTTTGAA-T-A-T-TTA-CA-CATTTG---ATAT------CAT-TACCGCCGAACG-A-ATCTG------CACTGGT-GAT--A-TTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AAC-GAGAC-AT-ATATATTGT----GGT-AATA--TTTTTTTTAA--A---TAA----ATATAGGCCTA-C----ATCAATCTGGAAT-GCTA--TAAAATTATCTTACA----G----AAT-GTGAC-GATCACGACGTG-ATTGTAAATGGC--CTTGTC---AAA-ACAGAAATTTT-GAAAAA-ATGGGACTAAAAGTGG-TTCCAG-GTG---AACTG-A-GGG-------TTGAATGGTCAGGAA--TTCATTAATTGAC-ATT-AGC-GGATATGTGATTTCTTGTG-TTTGGA-TT-GGTCGAATTAGG-T-AAATAAAG-AAA--TCTGGAACA---CACGTTGCCA---TCCTGG-T-CG-CT-TCGCGT--CGC
gi|6 : gagtcggcgtaattttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-T-GCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTC---------AATACCCCT--CA-GTTCCACCT-CGAA-TCCACTT-TTAT-TCCATTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-T--AATG-A---AC---T-TACC--AACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-ATTA-T-AT--CT-C----CCTTT-ATTTTTTGAA-T-AGT-TGA-CA-T-TTGG---ATAT------CATGTACGG--AGACG-ATATA-G------CACAGGT-G
gi|7 : aacggcaatttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------C-AATACCCCT--CA-GTTCCCCCT-CGAA-TCCACTT-TTAT-TCTACTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGACA-C---ATTTACTG-TAGAT-AA---TAAATTATTATGTTTCTGT-AATATTTCAGATATTTCTATATCAAATATA-T-ATGTT---AAAAATA-TAGAATG-ACGTAC---T-TACC-AAACAG-CCG--CT-CCAAA-TT--GTTGGAC-ATTT-T-TCC--AT--GCC-TCGAAACAAT-CAAATGAATACGA-A-TTTCA-CTAATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAGTATGCGT-TT--CT-CCTTTCCCTT-ATTTTTTGAATT-A-T-TGA-AATT-TTGG---ATAT------t
gi|8 : cacaggagtcggcaatttTATCAATAACAGT------TTA--GT-A-GAT-ATCGGT-AAAAAAAAAATTATT-A-C-ACATGAGCT-T-CGC-A-GGCGAA-GCGGGC--------TAGTGA-TGGCAACGTGTT--CCAGA----T-T--T-TATCT-T--TTTACC-AATTCGA--CC--ACTG-CA----AACAC-AAG-GATC-ACATC-CGTAAA--TG--GTCAATTAATA----A-ATTTG-CTTACCTT--------AAATA-CCCTCCCATGTT-C-----CGCG-TCCAC-T-TCAT-TCCA-
gi|9 : caggcaattc-T--CGCT--AC-------CG-AA-CTC-T-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCG-CATA-C-TTCTAC--------TTT------ATTGATCATAT-A--AAATTGCCGACTCCTgatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|9 : atGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AA-C-GATACTCAGTAT-CTCA-CA-A-C-TTCTAC--------TTTA-----A-TG-----AT-A--AAATGGCCGACagctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATCCCTTGCAAAGATGCAAAACTTGCTTCCACATTTATTCTTGAAATATTGAAATCGAATACATCTAATAAACGAAAATGAT
Alignments
lowQualScore : 11 11 222222 111 1 2222 1111 111 1111 111 222222222 1 11111 1 1 1111 11 11 11111 11 11111 1111 1111 111111 111 111 1 11111111 1 11 111 22222 1111 111 1 111 1 111 111111 111111 1 11 1 2222222 11 2222 1 1 11 11 1111111111 1111 2222 1111111 11 111 1 22222222 11 111 1 1 111 111 22222 111 22 1 1111 1 1 111 111 11 22222222222222 1111111 11111111 222222 11111
lowQualScore : 5 11 5 00 5 5 111111 5 5 1 5 5 000 555 5 5 5 0 3 0000 5 66 5 5 5 66 0 66 66 5 0000 5 0 5 5 5 66 333 2 7777 5 444 999999999 0 33333 0 3 5 5 5 5 0 2222 5 5 00 11 55555 33 00000 2222 5 2222 5 444444 5 555 5 1 5 000 5 5 5 0 5 5 5 5 77 5 1 5 88888888 5 5 1 66 77 5 0 33 5 5 5 5 77 77 5 5 5 1 666 5 55 5 5 55 000 5 11111 77 5 7777 333 1 5 111 5 5 1 000 666666 3 6 99 6 3 22 999999 3 6 11 0 0 88 6666666 99 8 8 0 4444 0 0 6 8 99 8 0 0 11 8888888888 7777 0 1111 4444444 11 8 8 222 1 6 66666666 0 8 8 3 8 8 88 0 0 00 999 8 8 8 6 3 5 8 0 444 222 22222 8 111 8 8 8 8 88 3 0 1111 0 3 8 0 3 88 444 0 444 8 8 8 8 8 6 99 55 5 5 4 333 33333333333333 3 3 3 3 0000000 3 3 2 3 3 22222222 111111 22222 3 55
lowQualScore : . .. . .. . . ...... . . . . . ... ... . . . . . .... . .. . . . .. . .. .. . .... . . . . . .. ... . .... . ... ......... . ..... . . . . . . . .... . . .. .. ..... .. ..... .... . .... . ...... . ... . . . ... . . . . . . . . .. . . . ........ . . . .. .. . . .. . . . . .. .. . . . . ... . .. . . .. ... . ..... .. . .... ... . . ... . . . ... ...... . . .. . . .. ...... . . .. . . .. ....... .. . . . .... . . . . .. . . . .. .......... .... . .... ....... .. . . ... . . ........ . . . . . . .. . . .. ... . . . . . . . . ... ... ..... . ... . . . . .. . . .... . . . . . .. ... . ... . . . . . . .. .. . . . ... .............. . . . . ....... . . . . . ........ ...... ..... . ..
lowQualScore : 0 99 0 11 0 0 222222 9 0 4 0 0 111 111 0 0 0 0 2 6666 0 99 0 0 0 99 4 99 99 0 6666 0 1 0 0 0 99 888 2 5555 0 444 111111111 0 44444 0 1 0 0 0 0 0 1111 7 7 77 66 11111 66 11111 1111 7 1111 7 666666 7 777 7 7 7 000 1 7 0 7 7 7 7 7 99 7 4 7 11111111 7 4 4 44 99 7 7 66 7 7 7 7 99 99 7 7 7 7 111 7 99 7 0 99 000 7 66666 99 7 9999 999 4 7 666 7 7 4 000 444444 5 7 22 7 5 77 222222 3 7 00 8 6 88 0000000 00 0 0 8 6666 6 8 0 0 00 0 8 8 00 8888888888 2222 8 4444 6666666 00 0 0 444 4 0 88888888 8 0 0 2 0 0 88 8 8 00 888 0 0 0 0 6 6 0 6 000 222 00000 0 888 0 0 0 0 44 2 6 8888 8 2 0 6 6 88 000 8 000 0 0 0 0 0 7 22 88 7 7 0 999 99999999999999 3 3 3 3 8888888 3 3 4 3 3 11111111 222222 77777 6 00
consensus : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ATAT-AT--T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
Reference ( family-3545 ) : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ATAT-AT--T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC--NAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
gi|1 : CAATAA-TG-AGAA--GTA-TGTGA---T-TCCGG---AAAA------TACC-TAC-AC-TGAAGTATACGCTG-AGCGTAAGCGA-CGAAAG-GACAG-GAATGGCA-CG-GTTT-CCAGA----TGT--T-T-TCT-AAATTTACTAAGTTTGATTCCTAACTTTCACTATATCAC-AAGCAACT-ACATC-CGT-TA--TATCGTCAGTTAATGTA--A-ATTGAGCTGACATTAATATCACAAACA-TCTT-------T-CACCTATGAA-TC-ACTTGTTAT--CCA-TTCTTATATCAAAATTCCTGATCTTAGACAG-CG-C-C---ATTTTTAC---A-ATTTTCTCCG-TAAAGGT-GGA----TCTCC-CTGTAATTACT--TAGAA-AA---TAA--TATTA-GTTTCT---AGTAT-----A-ATTT-T-TATC-AATATTAT-ATGTTATAAAAAATA-TA-AATA-G---ACACGTATACCAATACAG-C-GAACT-CTAAAGTTT-GTTGGAC-A-TT-T-TCT--ATATGCTGTCGAAAC-CTACAAATGAATA-GA-T-TTTCAACT-GCATA-GTTTAAGATTCCCCACAA-ATGCAAGT---ATA-G-AT-----AT--CT-C----CCTTTTA-ATTTTGAA-TTA-CATGA-CA-TATTGGTATATAT------CTT-TACGG--AAGCG-AATTATG------CAC-GGT-GAT--ATTTTTTC-AT-ATTTTAGCAGT--AT-AATAAAAAAA--TTAACAAAGACTATGATATTAT--TTGGTAAATA--TTTTTTT--A--A----AAT---ATACGA---TA-T-ATTATCAACTTG--AT-G-TA--AAATAATATC-TACATGTCGT--A----GTCA--GT--ACG-CG-GCATTGTAT-TGG--GTTTGTT--CAAA-ACAG-AGTTTT-GAAAAA-ATGG-AATAAAGGTGGATTCGAGTGGA---AACTG-T-GGA-G---TATTAAG-GGTAGAGAATTTTCATTAATTAACAATT-A-C-GGAT--GTGATTT-TTGTG-TTTGGA-G--GGTCAAATTA-G-TAAAAAAGAAGATAA--CTGGAAAAAATCACGTTGCCAATCTCGT-GTT-CGTCT-TCGC-TTCCGCTTAAC-GC-TCGCG-AA-CTC-A-GTG------A-GGAGT-A-TGTTTAAC-CAGA-------CA--------ATA-C-TTCTACTTACGACTTTTAT----ATTG-----AT-A--AAAATGCCGACTC
gi|11 : ctggcaattatttaCCC-A-ATGCC----ATGGTTGTA-TTTTC-AC-C-CA-------TATCTTT----TA-T-TTCTAC--------TTTA------TTG-----AT-G--AAATTGCCAACTACT
gi|12 : agg-A-GTTCTC---A-GGT---A-TTTAT-GC-C-CA-------TTT-TTCA-CATGGT-TTCTAT--------TCTT-----ACTG-----ATTA--AAATTGC-GACTCCTta
gi|13 : acCGCA-AAGTTC-ACGTGT-------------A-TATAT-GC-C-CA-------TTT-TGCA-CATA-T-TCCTAT--------TCTA------CTG-----AT-A--AAATTGCCGACTCCTtt
gi|14 : t-GC-TCGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCA-CATA-C-TTCTAC--------TTT------ATTG-----AT-A--AAATTGCCG
gi|15 : -AAGCTC-A-CTGAT----A-GT----A-TTTTT-AC-C-CA-------TAT-CTCA-TGTA-T-TTCTAC--------TTT------ATTA-----AT-A--AAATTGCCGACT
gi|16 : T--AC-GC-TCACG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-ACGC-GA-------TAT-TTCA-T-TA-C-TTCTAC--------TTTA-----a
gi|2 : aTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGC-------------GTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TTC-TCT-A--TTTACCTAATTC----------TC-CA----AACAC-AAGAAATC-ACATCGCGT-AAAGT---GTAATTTAATG----A-ATTC---TGACCTT--------AAATA-CCAT---A-GTT-CACCT-ATAA-TTCACTT-TTAT-TCTA-TTTTT----CAAAATTC-TG-TTTT-GACAA-GCGC--------------------TT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-AAGAA-AA---TAAAATATTATGTTTCTGC-AATATTTCAGATATTTCT-TATC-AATATT-T-AT-TTA--TACAAGACTA-AATGTA---ATCA-T-TTCC-AACCAG-GCG--CT-CCAA--TTAAGTTGGA--A-TTGTATCC---T--G-C-TCGAAAA-AT-C-AATGAATACGACA-TTTCA-CT-ATCTGCCTTTCAAATTCCCCACAACGCGCAAGTTCAATAAG-AC---T-CTCACT-CT---CCCTT-A-TTTTGGAA-T-A---TGATCA-T-TTGG---AT-T------C-T-TACGG--AGACGCATATTCGGGGCCCCAC-GGT-GCTTAATTTTTCATAT--T-------GTA-AT-A-CAAGAAAA----AAC--AGACTATAATAT-AT--T-GTGATATAATTTTTCTT--AACA---TAAC---AT-------TATC-AT--TCAACTTG--ATGG-TAGTAAATATTAT--TACAG---GTGAAAAT-GTGAC-GTCCACG--G-G---TGTAAATGGCC-CTTGTCTATAAA-ACAG-AATTTT-GAAAAATATGG-AATAAAAGTGGATTCGAG-GTGCGAAACTG-A-GGGCGGGCTACTGAA-GGTCAGGAA---TCATTAATTGAC-ATTAA-C-GGAT--GTGATTTCTTGTGTTCTGGA-GTGGGTCGAATTAGGTTAGACTAGAGAAGAACTCTGGAAAA---C-CGTTGCCA---TACT-G-T-CG-CT-TCGC-T--CGCT--ACAGC-TCGCG-AAGATCAA-GTGCTACTAA-GG----A--TTTT-AC-C-GG-------TAT-TTTAGCATA-C-TTATAC--------TTT------ATTGA----AT-AACAAGTTG-CGACTCCc
gi|3 : cacaggagtcggcaatttTATCAATAA-AGTAAAAAAGGA-TG-GA------TCGGT-AAAAAAT----TACT-ACC-AC-TGAGCT-T-CGC-GGAGCGTA-GCG---GAAGCTGACAG-GA-TGGCA-CGTGTTTCCC-GA----T-TCTT-C-TCTCA--TTTACCT--TCCGA--CC--ACTC-CA----AACACGAAGAAATC-ACATC-CGT-AA--T---GTCA--TAATGGAAAA-ATTC--C-GACCTC-------TAAATA-CCA---CA-GTT-CCCCT-CCGA-TCC--CT-TTAT-TCCA-TTTTT----GTCAACTC-TG-TTT--GACA--CAGCGC---ATTT--AC---ACATTC----CG-T----GTTGCA----CGTCAAC---ATTTA-TG-TAGATCAA---TAAA-TATTATGTTTCTGTTAATATTTCTGAT---------TC-AATATT-T-ATGTTA--TAAAATA-TA-AATG-A---AC---T-TAC--AAACAG-CCG--CT-CCAAAGTT--GTTGGACCA-TT-T-TCA--AT--GCC-CCGAAAC-AT-CAAATGGATACGA-ACTTTCA-CT-----G-CTC-CAAATTCCCCACAA----CGAG----ATAAA-AT---TTAT--CT-C----CCTTTTA-TTTTTGAAAT-A-T-TGA-CA-T-T-GG---ATATATCCATTAT-TACGG--AGACG-ATATTTG------CAC-GGTTGAT--ATTGTTAT-ATCAT-------GTTAATCA-TAAAAAAAATT-AACAAAGACTAT-ATAT-AT--T-GGTAA-TA--TTTTTTT--A--AATCTAACCCAATATA--CTTA-CCAT-AT----TTG--AT-G-TT--AAAAACTATCCTACA----GT--AAATTGTGACCGTCACCA-CG-G-ATTG-GAATG-CCGCTTGTC--CAAACACAG-AGTTTTTGAAAAACATGGAAGGAAAAGTG----CGGA-GGG---AACTGTACGGG-G---TAATTAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CCGGATA-GTAGTTTTCTGTGTTTTGGACGT-GGTCGAAT-AAG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-TACG-CTCTCGC-T--CGCTG-AC-GCATCGCGAAAGCTC-A-GTG-T----A-GT----ATTTTTT-AC-C-GA------------TCA-C-TA-CTTTCTAC--------TTTATGTTTATTG-----AT-A--AAATTGCCGACTC
gi|4 : ggagtcggcaatttTATCAATAA-AGTAGAG--TTA-TGTGACAAT-ATCGGT-AAAAA------T-CT-AGC-A--TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC--A----AACAC-AAGAA-TC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG--CG--CTCCCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATT-CCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATATG------CAC-GGT-GGT--ATTTTTTTTAT-AT-------GT--AT-A-TAAA--------AACAAAGACTAT-AAAT-ATA-T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--TAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACA-CG-G-ATTGTAAATGGCCGCTTGTC--AAAA-ACAG-AATTTT-GAAGAA-ATGGAAATAAAAGTGGATTCGAG-GTG---GACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGAT--GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-T--AATAGAG-AAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC---GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTGCT
gi|5 : TATCAATAA-AGTAGAAT-GTAATGTGA-AATTAT-GGTGAAAAA------TTCCGAGCGAC-TGAGCT---CGC-G-AG-GTA-GCGAGCGAAGC-GACAG-GAATGGCAA-GT-TTTTCCAGAATTTT-T--C-C-TCT-A--TTTAC-TAATTCGA--C---ACTC-AG----AACAC-AGAAAATCCACATC-CGT-A---T---GTCAAT--ATG----ATATTC---TGA---T-------TAAAT---CCC--CATGTT-CACCT-AGAAATTCACTT-T-ATGTCTA-TTTTT----TCAAATTC-TG-TTT--GACAA-CGGC-TGCAATTTG-ACCAGA-ATTT----CGGT----GT-G-AAAGTCGTCA-CG--ATTTACTGGTA-AT-AAACATCAAATATTATGTTT-TGT-AATATTTCAGAT--TTCT-TAT--AATATT-CCATGTTA--AAGAATA-TATAATG-A----C---T-TACCAAA-CAGGCCG--CT-CAAAAGTT--GTTGGAC-A-TT-T-TCCTCAT--GCC-TCGAAAC-AT-CAA-TGAATCCGA-A-GTTTA-CT-ATTTG-CTT-CAAATTCCCCACAA-ACGCAAGT---ATAA--AT---T-AT--CTCC----CCTTT-A-TTTTTGAA-T-A-T-TTA-CA-CATTTG---ATAT------CAT-TACCGCCGAACG-A-ATCTG------CACTGGT-GAT--A-TTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AAC-GAGAC-AT-ATAT-ATTGT-GGT-AATA--TTTTTTTTAA--A---TAA----ATATAGGCCTA-C----ATCAATCTGGAAT-GCTA--TAAAATTATCTTACA----G----AAT-GTGAC-GATCACGACGTG-ATTGTAAATGGC--CTTGTC---AAA-ACAGAAATTTT-GAAAAA-ATGGGACTAAAAGTGG-TTCCAG-GTG---AACTG-A-GGG-------TTGAATGGTCAGGAA--TTCATTAATTGAC-ATT-AGC-GGATATGTGATTTCTTGTG-TTTGGA-TT-GGTCGAATTAGG-T-AAATAAAG--AAA-TCTGGAACA---CACGTTGCCA---TCCTGG-T-CG-CT-TCGCGT--CGC
gi|6 : gagtcggcgtaattttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-T-GCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTC---------AATACCCCT--CA-GTTCCACCT-CGAA-TCCACTT-TTAT-TCCATTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-T--AATG-A---AC---T-TACC--AACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-ATTA-T-AT--CT-C----CCTTT-ATTTTTTGAA-T-AGT-TGA-CA-T-TTGG---ATAT------CATGTACGG--AGACG-ATATA-G------CACAGGT-G
gi|7 : aacggcaatttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------C-AATACCCCT--CA-GTTCCCCCT-CGAA-TCCACTT-TTAT-TCTACTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGACA-C---ATTTACTG-TAGAT-AA---TAAATTATTATGTTTCTGT-AATATTTCAGATATTTCTATATCAAATATA-T-ATGTT---AAAAATA-TAGAATG-ACGTAC---T-TACC-AAACAG-CCG--CT-CCAAA-TT--GTTGGAC-ATTT-T-TCC--AT--GCC-TCGAAACAAT-CAAATGAATACGA-A-TTTCA-CTAATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAGTATGCGT-TT--CT-CCTTTCCCTT-ATTTTTTGAATT-A-T-TGA-AATT-TTGG---ATAT------t
gi|8 : cacaggagtcggcaatttTATCAATAACAGT------TTA--GT-A-GAT-ATCGGT-AAAAAAAAAATTATT-A-C-ACATGAGCT-T-CGC-A-GGCGAA-GCGGGC--------TAGTGA-TGGCAACGTG--TTCCAGA----T-T--T-TATCT-T--TTTACC-AATTCGA--CC--ACTG-CA----AACAC-AAG-GATC-ACATC-CGTAAA--TG--GTCAATTAATA----A-ATTTG-CTTACCTT--------AAATA-CCCTCCCATGTT-C-----CGCG-TCCAC-T-TCAT-TCCA-
gi|9 : caggcaattc-T--CGCT--AC-------CG-AA-CTC-T-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCG-CATA-C-TTCTAC--------TTT------ATTGATCATAT-A--AAATTGCCGACTCCTgatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|9 : atGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AA-C-GATACTCAGTAT-CTCA-CA-A-C-TTCTAC--------TTTA-----A-TG-----AT-A--AAATGGCCGACagctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATCCCTTGCAAAGATGCAAAACTTGCTTCCACATTTATTCTTGAAATATTGAAATCGAATACATCTAATAAACGAAAATGAT
Alignments
lowQualScore : 11 11 222222 111 1 2222 1111 111 1111 111 222222222 1 11111 1 1 1111 11 11 11111 11 11111 1111 1111 111111 111 111 1 11111111 1 11 111 22222 1111 111 1 111 1 111 111111 111111 1 11 1 2222222 11 2222 1 1 11 11 1111111111 1111 2222 1111111 11 111 1 22222222 11 111 1 1 111 111 22222 111 22 1 1111 1 1 111 111 11 22222222222222 1111111 11111111 222222 11111
lowQualScore : 5 11 5 00 5 5 111111 5 5 1 5 5 000 555 5 5 5 0 3 0000 5 66 5 5 5 66 0 66 66 5 0000 5 0 5 5 5 66 333 2 7777 5 444 999999999 0 33333 0 3 5 5 5 5 0 2222 5 5 00 11 55555 33 00000 2222 5 2222 5 444444 5 555 5 1 5 000 5 5 5 0 5 5 5 5 77 5 1 5 88888888 5 5 1 66 77 5 0 33 5 5 5 5 77 77 5 5 5 1 666 5 55 5 5 55 000 5 11111 77 5 7777 333 1 5 111 5 5 1 000 666666 3 6 99 6 3 22 999999 3 6 11 0 0 88 6666666 99 8 8 0 4444 0 0 6 8 99 8 0 0 11 8888888888 7777 0 1111 4444444 11 8 8 222 1 6 66666666 0 8 8 3 8 8 88 0 0 00 444 8 8 8 6 3 5 8 0 444 222 22222 8 111 8 8 8 8 88 3 0 1111 0 3 8 0 3 88 444 0 444 8 8 8 8 8 6 99 55 5 5 4 333 33333333333333 3 3 3 3 0000000 3 3 2 3 3 22222222 111111 22222 3 55
lowQualScore : . .. . .. . . ...... . . . . . ... ... . . . . . .... . .. . . . .. . .. .. . .... . . . . . .. ... . .... . ... ......... . ..... . . . . . . . .... . . .. .. ..... .. ..... .... . .... . ...... . ... . . . ... . . . . . . . . .. . . . ........ . . . .. .. . . .. . . . . .. .. . . . . ... . .. . . .. ... . ..... .. . .... ... . . ... . . . ... ...... . . .. . . .. ...... . . .. . . .. ....... .. . . . .... . . . . .. . . . .. .......... .... . .... ....... .. . . ... . . ........ . . . . . . .. . . .. ... . . . . . . . . ... ... ..... . ... . . . . .. . . .... . . . . . .. ... . ... . . . . . . .. .. . . . ... .............. . . . . ....... . . . . . ........ ...... ..... . ..
lowQualScore : 0 99 0 11 0 0 222222 9 0 4 0 0 111 111 0 0 0 0 2 6666 0 99 0 0 0 99 4 99 99 0 6666 0 1 0 0 0 99 888 2 5555 0 444 111111111 0 44444 0 1 0 0 0 0 0 1111 7 7 77 66 11111 66 11111 1111 7 1111 7 666666 7 777 7 7 7 000 1 7 0 7 7 7 7 7 99 7 4 7 11111111 7 4 4 44 99 7 7 66 7 7 7 7 99 99 7 7 7 7 111 7 99 7 0 99 000 7 66666 99 7 9999 999 4 7 666 7 7 4 000 444444 5 7 22 7 5 77 222222 3 7 00 8 6 88 0000000 00 0 0 8 6666 6 8 0 0 00 0 8 8 00 8888888888 2222 8 4444 6666666 00 0 0 444 4 0 88888888 8 0 0 2 0 0 88 8 8 00 222 0 0 0 0 6 6 0 6 000 222 00000 0 888 0 0 0 0 44 2 6 8888 8 2 0 6 6 88 000 8 000 0 0 0 0 0 7 22 88 7 7 0 999 99999999999999 3 3 3 3 8888888 3 3 4 3 3 11111111 222222 77777 6 00
consensus : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ATAT-AT--T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
Reference ( family-3545 ) : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ATAT-AT--T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
gi|1 : CAATAA-TG-AGAA--GTA-TGTGA---T-TCCGG---AAAA------TACC-TAC-AC-TGAAGTATACGCTG-AGCGTAAGCGA-CGAAAG-GACAG-GAATGGCA-CG-GTTT-CCAGA----TGT--T-T-TCT-AAATTTACTAAGTTTGATTCCTAACTTTCACTATATCAC-AAGCAACT-ACATC-CGT-TA--TATCGTCAGTTAATGTA--A-ATTGAGCTGACATTAATATCACAAACA-TCTT-------T-CACCTATGAA-TC-ACTTGTTAT--CCA-TTCTTATATCAAAATTCCTGATCTTAGACAG-CG-C-C---ATTTTTAC---A-ATTTTCTCCG-TAAAGGT-GGA----TCTCC-CTGTAATTACT--TAGAA-AA---TAA--TATTA-GTTTCT---AGTAT-----A-ATTT-T-TATC-AATATTAT-ATGTTATAAAAAATA-TA-AATA-G---ACACGTATACCAATACAG-C-GAACT-CTAAAGTTT-GTTGGAC-A-TT-T-TCT--ATATGCTGTCGAAAC-CTACAAATGAATA-GA-T-TTTCAACT-GCATA-GTTTAAGATTCCCCACAA-ATGCAAGT---ATA-G-AT-----AT--CT-C----CCTTTTA-ATTTTGAA-TTA-CATGA-CA-TATTGGTATATAT------CTT-TACGG--AAGCG-AATTATG------CAC-GGT-GAT--ATTTTTTC-AT-ATTTTAGCAGT--AT-AATAAAAAAA--TTAACAAAGACTATGATATTAT--TTGGTAAATA--TTTTTTT--A--A----AAT---ATACGA---TA-T-ATTATCAACTTG--AT-G-TA--AAATAATATC-TACATGTCGT--A----GTCA--GT--ACG-CG-GCATTGTAT-TGG--GTTTGTT--CAAA-ACAG-AGTTTT-GAAAAA-ATGG-AATAAAGGTGGATTCGAGTGGA---AACTG-T-GGA-G---TATTAAG-GGTAGAGAATTTTCATTAATTAACAATT-A-C-GGAT--GTGATTT-TTGTG-TTTGGA-G--GGTCAAATTA-G-TAAAAAAGAAGATAA--CTGGAAAAAATCACGTTGCCAATCTCGT-GTT-CGTCT-TCGC-TTCCGCTTAAC-GC-TCGCG-AA-CTC-A-GTG------A-GGAGT-A-TGTTTAAC-CAGA-------CA--------ATA-C-TTCTACTTACGACTTTTAT----ATTG-----AT-A--AAAATGCCGACTC
gi|11 : ctggcaattatttaCCC-A-ATGCC----ATGGTTGTA-TTTTC-AC-C-CA-------TATCTTT----TA-T-TTCTAC--------TTTA------TTG-----AT-G--AAATTGCCAACTACT
gi|12 : agg-A-GTTCTC---A-GGT---A-TTTAT-GC-C-CA-------TTT-TTCA-CATGGT-TTCTAT--------TCTT-----ACTG-----ATTA--AAATTGC-GACTCCTta
gi|13 : acCGCA-AAGTTC-ACGTGT-------------A-TATAT-GC-C-CA-------TTT-TGCA-CATA-T-TCCTAT--------TCTA------CTG-----AT-A--AAATTGCCGACTCCTtt
gi|14 : t-GC-TCGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCA-CATA-C-TTCTAC--------TTT------ATTG-----AT-A--AAATTGCCG
gi|15 : -AAGCTC-A-CTGAT----A-GT----A-TTTTT-AC-C-CA-------TAT-CTCA-TGTA-T-TTCTAC--------TTT------ATTA-----AT-A--AAATTGCCGACT
gi|16 : T--AC-GC-TCACG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-ACGC-GA-------TAT-TTCA-T-TA-C-TTCTAC--------TTTA-----a
gi|2 : aTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGC-------------GTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TTC-TCT-A--TTTACCTAATTC----------TC-CA----AACAC-AAGAAATC-ACATCGCGT-AAAGT---GTAATTTAATG----A-ATTC---TGACCTT--------AAATA-CCAT---A-GTT-CACCT-ATAA-TTCACTT-TTAT-TCTA-TTTTT----CAAAATTC-TG-TTTT-GACAA-GCGC--------------------TT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-AAGAA-AA---TAAAATATTATGTTTCTGC-AATATTTCAGATATTTCT-TATC-AATATT-T-AT-TTA--TACAAGACTA-AATGTA---ATCA-T-TTCC-AACCAG-GCG--CT-CCAA--TTAAGTTGGA--A-TTGTATCC---T--G-C-TCGAAAA-AT-C-AATGAATACGACA-TTTCA-CT-ATCTGCCTTTCAAATTCCCCACAACGCGCAAGTTCAATAAG-AC---T-CTCACT-CT---CCCTT-A-TTTTGGAA-T-A---TGATCA-T-TTGG---AT-T------C-T-TACGG--AGACGCATATTCGGGGCCCCAC-GGT-GCTTAATTTTTCATAT--T-------GTA-AT-A-CAAGAAAA----AAC--AGACTATAATAT-AT--T-GTGATATAATTTTTCTT--AACA---TAAC---AT-------TATC-AT--TCAACTTG--ATGG-TAGTAAATATTAT--TACAG---GTGAAAAT-GTGAC-GTCCACG--G-G---TGTAAATGGCC-CTTGTCTATAAA-ACAG-AATTTT-GAAAAATATGG-AATAAAAGTGGATTCGAG-GTGCGAAACTG-A-GGGCGGGCTACTGAA-GGTCAGGAA---TCATTAATTGAC-ATTAA-C-GGAT--GTGATTTCTTGTGTTCTGGA-GTGGGTCGAATTAGGTTAGACTAGAGAAGAACTCTGGAAAA---C-CGTTGCCA---TACT-G-T-CG-CT-TCGC-T--CGCT--ACAGC-TCGCG-AAGATCAA-GTGCTACTAA-GG----A--TTTT-AC-C-GG-------TAT-TTTAGCATA-C-TTATAC--------TTT------ATTGA----AT-AACAAGTTG-CGACTCCc
gi|3 : cacaggagtcggcaatttTATCAATAA-AGTAAAAAAGGA-TG-GA------TCGGT-AAAAAAT----TACT-ACC-AC-TGAGCT-T-CGC-GGAGCGTA-GCG---GAAGCTGACAG-GA-TGGCA-CGTGTTTCCC-GA----T-TCTT-C-TCTCA--TTTACCT--TCCGA--CC--ACTC-CA----AACACGAAGAAATC-ACATC-CGT-AA--T---GTCA--TAATGGAAAA-ATTC--C-GACCTC-------TAAATA-CCA---CA-GTT-CCCCT-CCGA-TCC--CT-TTAT-TCCA-TTTTT----GTCAACTC-TG-TTT--GACA--CAGCGC---ATTT--AC---ACATTC----CG-T----GTTGCA----CGTCAAC---ATTTA-TG-TAGATCAA---TAAA-TATTATGTTTCTGTTAATATTTCTGAT---------TC-AATATT-T-ATGTTA--TAAAATA-TA-AATG-A---AC---T-TAC--AAACAG-CCG--CT-CCAAAGTT--GTTGGACCA-TT-T-TCA--AT--GCC-CCGAAAC-AT-CAAATGGATACGA-ACTTTCA-CT-----G-CTC-CAAATTCCCCACAA----CGAG----ATAAA-AT---TTAT--CT-C----CCTTTTA-TTTTTGAAAT-A-T-TGA-CA-T-T-GG---ATATATCCATTAT-TACGG--AGACG-ATATTTG------CAC-GGTTGAT--ATTGTTAT-ATCAT-------GTTAATCA-TAAAAAAAATT-AACAAAGACTAT-ATAT-AT--T-GGTAA-TA--TTTTTTT--A--AATCTAACCCAATATA--CTTA-CCAT-AT----TTG--AT-G-TT--AAAAACTATCCTACA----GT--AAATTGTGACCGTCACCA-CG-G-ATTG-GAATG-CCGCTTGTC--CAAACACAG-AGTTTTTGAAAAACATGGAAGGAAAAGTG----CGGA-GGG---AACTGTACGGG-G---TAATTAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CCGGATA-GTAGTTTTCTGTGTTTTGGACGT-GGTCGAAT-AAG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-TACG-CTCTCGC-T--CGCTG-AC-GCATCGCGAAAGCTC-A-GTG-T----A-GT----ATTTTTT-AC-C-GA------------TCA-C-TA-CTTTCTAC--------TTTATGTTTATTG-----AT-A--AAATTGCCGACTC
gi|4 : ggagtcggcaatttTATCAATAA-AGTAGAG--TTA-TGTGACAAT-ATCGGT-AAAAA------T-CT-AGC-A--TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC--A----AACAC-AAGAA-TC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG--CG--CTCCCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATT-CCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATATG------CAC-GGT-GGT--ATTTTTTTTAT-AT-------GT--AT-A-TAAA--------AACAAAGACTAT-AAAT-ATA-T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--TAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACA-CG-G-ATTGTAAATGGCCGCTTGTC--AAAA-ACAG-AATTTT-GAAGAA-ATGGAAATAAAAGTGGATTCGAG-GTG---GACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGAT--GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-T--AATAGAG-AAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC---GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTGCT
gi|5 : TATCAATAA-AGTAGAAT-GTAATGTGA-AATTAT-GGTGAAAAA------TTCCGAGCGAC-TGAGCT---CGC-G-AG-GTA-GCGAGCGAAGC-GACAG-GAATGGCAA-GT-TTTTCCAGAATTTT-T--C-C-TCT-A--TTTAC-TAATTCGA--C---ACTC-AG----AACAC-AGAAAATCCACATC-CGT-A---T---GTCAAT--ATG----ATATTC---TGA---T-------TAAAT---CCC--CATGTT-CACCT-AGAAATTCACTT-T-ATGTCTA-TTTTT----TCAAATTC-TG-TTT--GACAA-CGGC-TGCAATTTG-ACCAGA-ATTT----CGGT----GT-G-AAAGTCGTCA-CG--ATTTACTGGTA-AT-AAACATCAAATATTATGTTT-TGT-AATATTTCAGAT--TTCT-TAT--AATATT-CCATGTTA--AAGAATA-TATAATG-A----C---T-TACCAAA-CAGGCCG--CT-CAAAAGTT--GTTGGAC-A-TT-T-TCCTCAT--GCC-TCGAAAC-AT-CAA-TGAATCCGA-A-GTTTA-CT-ATTTG-CTT-CAAATTCCCCACAA-ACGCAAGT---ATAA--AT---T-AT--CTCC----CCTTT-A-TTTTTGAA-T-A-T-TTA-CA-CATTTG---ATAT------CAT-TACCGCCGAACG-A-ATCTG------CACTGGT-GAT--A-TTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AAC-GAGAC-AT-ATAT-ATTGT-GGT-AATA--TTTTTTTTAA--A---TAA----ATATAGGCCTA-C----ATCAATCTGGAAT-GCTA--TAAAATTATCTTACA----G----AAT-GTGAC-GATCACGACGTG-ATTGTAAATGGC--CTTGT---CAAA-ACAGAAATTTT-GAAAAA-ATGGGACTAAAAGTGG-TTCCAG-GTG---AACTG-A-GGG-------TTGAATGGTCAGGAA--TTCATTAATTGAC-ATT-AGC-GGATATGTGATTTCTTGTG-TTTGGA-TT-GGTCGAATTAGG-T-AAATAAAG--AAA-TCTGGAACA---CACGTTGCCA---TCCTGG-T-CG-CT-TCGCGT--CGC
gi|6 : gagtcggcgtaattttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-T-GCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTC---------AATACCCCT--CA-GTTCCACCT-CGAA-TCCACTT-TTAT-TCCATTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-T--AATG-A---AC---T-TACC--AACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-ATTA-T-AT--CT-C----CCTTT-ATTTTTTGAA-T-AGT-TGA-CA-T-TTGG---ATAT------CATGTACGG--AGACG-ATATA-G------CACAGGT-G
gi|7 : aacggcaatttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------C-AATACCCCT--CA-GTTCCCCCT-CGAA-TCCACTT-TTAT-TCTACTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGACA-C---ATTTACTG-TAGAT-AA---TAAATTATTATGTTTCTGT-AATATTTCAGATATTTCTATATCAAATATA-T-ATGTT---AAAAATA-TAGAATG-ACGTAC---T-TACC-AAACAG-CCG--CT-CCAAA-TT--GTTGGAC-ATTT-T-TCC--AT--GCC-TCGAAACAAT-CAAATGAATACGA-A-TTTCA-CTAATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAGTATGCGT-TT--CT-CCTTTCCCTT-ATTTTTTGAATT-A-T-TGA-AATT-TTGG---ATAT------t
gi|8 : cacaggagtcggcaatttTATCAATAACAGT------TTA--GT-A-GAT-ATCGGT-AAAAAAAAAATTATT-A-C-ACATGAGCT-T-CGC-A-GGCGAA-GCGGGC--------TAGTGA-TGGCAACGTG--TTCCAGA----T-T--T-TATCT-T--TTTACC-AATTCGA--CC--ACTG-CA----AACAC-AAG-GATC-ACATC-CGTAAA--TG--GTCAATTAATA----A-ATTTG-CTTACCTT--------AAATA-CCCTCCCATGTT-C-----CGCG-TCCAC-T-TCAT-TCCA-
gi|9 : caggcaattc-T--CGCT--AC-------CG-AA-CTC-T-GTGGT----A-GT----A-TTTTT-AC-C-GA-------TAT-CTCG-CATA-C-TTCTAC--------TTT------ATTGATCATAT-A--AAATTGCCGACTCCTgatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|9 : atGCG-AAGCTC-A-GTGGT----A-GT----A-TTTTT-AA-C-GATACTCAGTAT-CTCA-CA-A-C-TTCTAC--------TTTA-----A-TG-----AT-A--AAATGGCCGACagctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
blockSeqs : C AA A CA T G AAAAAT C G G G A T GG . T T A A ATTT . CT T A C . . . . . G C G A AG G T GAAA T GC TA C CCCAT C A . A . G T . . . T AG TGCA G CAGA . G . T AAAGT A G G G C ACA A T A A A . C . C T T CGTAC . A C GC . C AA C T G A TC . . A . C CA . AA C T CG TCA T GCGT CA C CTTT TA A . GT T T A . ATCCAT A G CC C T TC GGGCCC T T TA T CA . TA C . ATT A A . TG . AT AAATCT CCCA GGCC CCATA GA G C GTA T C GGTGA T C C A T A CG CTA C A T T A A . CGA TAC CGGGC T T . A G C AT C T GTG G T A A CT . . G . A . C G . G A A A AC CCATGGTTGT T . G . TACTCAG C G A G T . ATGTTT ATCAT T AC
blockSeqs : . T . A . . AT A . C . . T G . . . . A T . . . . . . . . . . . . . . . . A . . C CA C CAT C C . . . . C . . . T AG GC . AC . . . . CA . . . G . . A . A . . . . . . G . ATCA . A A G . . . . . . . . . . . . C AC . A . T A . . TAT . . T AT T . T . . . . . A . . . T TT . A . . T A . A . . T A . . A . . AACAT C GGCC TCAT . . . A A T GT . . C . . A CG C . . . C A A . . A G . T . . . . A T T CGT A . A A T . . . . . . . . . . . . . AA CTACTAAGG . . . . . . . A . . . A A . .
blockSeqs : . . . A . . . T . G . . T G . . . . A T . . . . . . . . . . . . . . . . A . . C TA . CA . A . . . . . . . . T A C . A . . . . A . . . A . . A . A . . . . . . . . AC . . A C . . . . . . . . . . . . T A . A . T A . . TT . . . AT . . T . . . . . A . . . T AT . . . . T A . . . . . . . . . . . TAAAT C CT CATA . . . T T . GT . . C . . A C C . . . . G . . . A G . T . . . . . C T GT G . . . T . . . . . . . . . . . . . A CTCAGGT . . . . . . . A . . . T . . .
blockSeqs : . . . A . . . C . G . . T G . . . . A . . . . . . . . . . . . . . . . . A . . C A . CA . A . . . . . . . . T A C . A . . . . A . . . A . . A . A . . . . . . . . AC . . A C . . . . . . . . . . . . C A . A . T A . . T . . . A . . T . . . . . A . . . T CT . . . . . . . . . . . . . . . . . AAT . . CA . . . T A . G . . T . . . . . . . . . . . . . A . . . . . . . . C . TT G . . . T . . . . . . . . . . . . . A GTAGT . . . . . . . G . . . A . . .
blockSeqs : . . . A . . . C . G . . T G . . . . A . . . . . . . . . . . . . . . . . A . . C C . CA . A . . . . . . . . . A C . A . . . . A . . . G . . T . . . . . . . . . . AC . . A C . . . . . . . . . . . . T A . A . . A . . T . . . A . . T . . . . . . . . . . A . . . . . . . . . A ATAGT . . . . . . . A . . . A . . .
blockSeqs : . . . G . . . A . G . . . A . . . . A . . . . . . . . . . . . . . . . . A . . . A . CA . C . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . C A . . . . . . . T . . . A . . . . . . . . . . . A CTAGG . . . . . . . A . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . A CTAGG . . . . . . . A . . . A . . .
blockSeqs : . A GTAGT . . . . . . . A . . . . . . .
blockSeqs : . T GTAGT . . . . . . . . . . . . . . .
blockSeqs : A TAGT . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . .
blockSeqCons : A* T** G** ** ** ** **** *** **** C** CA******* CA*** **** T* ** **** **** A***** *** ** AC****** ** ** ** TT*** AT* T** *** ******* **** AAT******* CC** CATA*** GT****** A* C* T** GT** T* *** *** ** ** GTAGT********* ******** A*****
originalCons : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-AT---T-AT--CT-C----CCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--T-AACAAAGACTAT-ATAT-AT--T-GGTAAATA--TTTTTTT--A--A---TAAC---ATATAGGCCTA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCCGCTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGCT----A-GG----A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
finalCons : TATCAATAA-AGTAGAA--GTA-TGTGAA-AT-ATCGGT-AAAAA------TNCT-AGC-AC-TGAGCTT--CGCG--AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTCC--TGACCTTCA-------AATA-CCCTCA---GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-GA-----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-AAC------T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TCC--AT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-ATTT---AT--CT-C----CCTTTAT-TTTTTGAA-T-AT--TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA----AACAAAGACTAT-ATAT-AT--T-GGTAAATA--TTTTTTTAAT-------AAC---ATATACC--TACATA---TCAACTTG--AT-G-TA--AAATATTATC-TACAGT------AAAT-GTGAC-GTCCACG-CG-GA-TTGTAAATGGCC-CTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAAT--TCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGAGT--GGTCGAATTAGG-TAAAATAGAGAAAAAT-CTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTGGTAGT---------A-TTTTT-AC-C-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATCCCTTGCAAAGATGCAAAACTTGCTTCCACATTTATTCTTGAAATATTGAAATCGAATACATCTAATAAACGAAAATGAT
Alignments
lowQualScore : 11 111111 1 2222 1111 111 1111 111 222222222 1 11111 1 1 1111 11 11 11111 11 11111 1111 1111 111111 111 111 1 11111111 1 11 111 22222222222 111 111 1 111 111111 111111 1 11 1 2222222 11 222222 1 1 11 33333333333333 222222 1111111 11 111 1 22222222 111 111 1 1 111 111 22222 111 22 1 1111 1 1 111 111 11 111 1111111 11111111 222222 11111
lowQualScore : 4 00 66 88 4 4 4 888888 5 4 0 4 4 888 4 4 4 5 5 0 3 2 0000 5 66 5 5 5 66 0 66 66 5 0000 5 0 5 5 5 66 333 2 7777 5 444 999999999 0 33333 0 3 5 5 5 5 0 2222 5 5 00 11 55555 33 00000 2222 5 2222 5 444444 5 555 5 1 5 000 5 5 5 0 5 5 5 5 77 5 1 5 88888888 5 5 1 66 77 5 0 33 5 5 5 5 77 77 5 5 5 5 1 666 5 55 5 55 000 99999999999 5 77 5 0 666 5 5 111 5 5 1 000 666666 3 6 99 6 3 22 999999 3 6 11 0 0 88 6666666 99 8 8 0 444444 0 0 6 8 99 8 0 0 8 33333333333333 0 999999 4444444 11 8 8 222 1 6 66666666 0 8 8 3 8 8 88 0 0 111 444 8 8 8 6 3 5 8 0 444 222 22222 8 111 8 8 8 8 88 3 0 1111 0 3 8 0 3 88 444 0 444 8 8 8 8 8 6 99 99 6 6 4 1 666 66 000 3 3 1111111 44 3 3 3 33333333 333333 22222 3 55
lowQualScore : . .. .. .. . . . ...... . . . . . ... . . . . . . . . .... . .. . . . .. . .. .. . .... . . . . . .. ... . .... . ... ......... . ..... . . . . . . . .... . . .. .. ..... .. ..... .... . .... . ...... . ... . . . ... . . . . . . . . .. . . . ........ . . . .. .. . . .. . . . . .. .. . . . . . ... . .. . .. ... ........... . .. . . ... . . ... . . . ... ...... . . .. . . .. ...... . . .. . . .. ....... .. . . . ...... . . . . .. . . . . .............. . ...... ....... .. . . ... . . ........ . . . . . . .. . . ... ... . . . . . . . . ... ... ..... . ... . . . . .. . . .... . . . . . .. ... . ... . . . . . . .. .. . . . . ... .. ... . . ....... .. . . . ........ ...... ..... . ..
lowQualScore : 4 66 33 00 4 4 4 999999 3 4 1 4 4 000 4 4 4 0 0 0 2 0 6666 0 99 0 0 0 99 4 99 99 0 6666 0 1 0 0 0 99 888 2 5555 0 444 111111111 0 44444 0 1 0 0 0 0 0 1111 7 7 77 66 11111 66 11111 1111 7 1111 7 666666 7 777 7 7 7 000 1 7 0 7 7 7 7 7 99 7 4 7 11111111 7 4 4 44 99 7 7 66 7 7 7 7 99 99 7 7 7 0 7 111 7 99 7 99 000 66666666666 7 99 7 1 111 7 7 666 7 7 4 000 444444 5 7 22 7 5 77 222222 3 7 00 8 6 88 0000000 00 0 0 8 000000 6 8 0 0 00 0 8 8 0 22222222222222 8 444444 6666666 00 0 0 444 4 0 88888888 8 0 0 2 0 0 88 8 8 222 222 0 0 0 0 6 6 0 6 000 222 00000 0 888 0 0 0 0 44 2 6 8888 8 2 0 6 6 88 000 8 000 0 0 0 0 0 7 22 00 7 7 4 1 555 55 000 6 6 8888888 55 6 6 6 22222222 999999 77777 6 00
consensus : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCG-GT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TC--CAT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-----A--TT-TA-TC--T-CCCTTT-ATTTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAAT-A---ACAAAGACTAT-ATAT-AT--T-GGTAAAT-ATTTTTTT--AA---TAAC---ATATAGGC-C-TA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCC-CTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTG-GTAGTA---TTTTT-ACC-GA-------TAT-CTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
Reference ( family-3545 ) : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCG-GT-AAAAA------TNCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAGAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TC--CAT--GCC-TCGAAAC-AT-CAAATGAATACGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-----A--TT-TA-TC--T-CCCTTT-ATTTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATNTG------CAC-GGT-GAT--ATTTTTTTTAT-AT-------GT--AT-A-TAAAAAAA--A---ACAAAGACTAT-ATAT-AT--T-GGTAAAT-ATTTTTTT--AA---TAAC---ATATA--C-C-TA-C-AT-ATCAACTTG--AT-G-TA--AAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACG-CG-G-ATTGTAAATGGCC-CTTGTC--CAAA-ACAG-AATTTT-GAAAAA-ATGGAAATAAAAGTGGATTCGAG-GTG---AACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGATA-GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC-A-GTG-GTAGTA---TTTTT-ACC-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTCCT
gi|1 : CAATAA-TG-AGAA--GTA-TGTGA---T-TCCG-G---AAAA------TACC-TAC-AC-TGAAGTATACGCTG-AGCGTAAGCGA-CGAAAG-GACAG-GAATGGCA-CG-GTTT-CCAGA----TGT--T-T-TCT-AAATTTACTAAGTTTGATTCCTAACTTTCACTATATCAC-AAGCAACT-ACATC-CGT-TA--TATCGTCAGTTAATGTA--A-ATTGAGCTGACATTAATATCACAAACA-TCTT-------T-CACCTATGAA-TC-ACTTGTTAT--CCA-TTCTTATATCAAAATTCCTGATCTTAGACAG-CG-C-C---ATTTTTAC---A-ATTTTCTCCG-TAAAGGT-GGA----TCTCC-CTGTAATTACT--TAGAA-AA---TAA--TATTA-GTTTCT---AGTAT-----A-ATTT-T-TATC-AATATTAT-ATGTTATAAAAAATA-TA-AATA-G---ACACGTATACCAATACAG-C-GAACT-CTAAAGTTT-GTTGGAC-A-TT-T-TC--TATATGCTGTCGAAAC-CTACAAATGAATA-GA-T-TTTCAACT-GCATA-GTTTAAGATTCCCCACAA-ATGCAAGT---ATA-G-----A--T---A-TC--T-CCCTTT-TAATTTTGAA-TTA-CATGA-CA-TATTGGTATATAT------CTT-TACGG--AAGCG-AATTATG------CAC-GGT-GAT--ATTTTTTC-AT-ATTTTAGCAGT--AT-AATAAAAAAATTA---ACAAAGACTATGATATTAT--TTGGTAAAT-ATTTTTTT--AA-----A----ATATA--C-GATA-T-ATTATCAACTTG--AT-G-TA--AAATAATATC-TACATGTCGT--A----GTCA--GT--ACG-CG-GCATTGTAT-TGGGT--TTGTT--CAAA-ACAG-AGTTTT-GAAAAA-ATGG-AATAAAGGTGGATTCGAGTGGA---AACTG-T-GGA-G---TATTAAG-GGTAGAGAATTTTCATTAATTAACAATT-A-C-GGAT--GTGATTT-TTGTG-TTTGGA-G--GGTCAAATTA-G-TAAAAAAGAAGATAA--CTGGAAAAAATCACGTTGCCAATCTCGT-GTT-CGTCT-TCGC-TTCCGCTTAAC-GC-TCGCG-AA-CTC-A-GTGAGGAGTA---TGTTTAACCAGA-------CA--------ATA-C-TTCTACTTACGACTTTTAT----ATTG-----AT-A--AAAATGCCGACTC
gi|11 : ctggcaattatttaTG-GTTGTA---TTTTC-ACC-CA-------TATCTTT----TA-T-TTCTAC--------TTTA------TTG-----AT-G--AAATTGCCAACTACT
gi|12 : aggCTC-A-G------GTA---TTTAT-GCC-CA-------TTT-TTCA-CATGGT-TTCTAT--------TCTT-----ACTG-----ATTA--AAATTGC-GACTCCTtggcattgggta
gi|13 : acCGCA-AAGTTC-ACGTG-----TA---TATAT-GCC-CA-------TTT-TGCA-CATA-T-TCCTAT--------TCTA------CTG-----AT-A--AAATTGCCGACTCCTaacttt
gi|14 : t-GC-TCGCG-AAGCTC-A-GTG-GTAGTA---TTTTT-ACC-GA-------TAT-CTCA-CATA-C-TTCTAC--------TTT------ATTG-----AT-A--AAATTGCCG
gi|15 : -AAGCTC-A-CTG-ATAGTA---TTTTT-ACC-CA-------TAT-CTCA-TGTA-T-TTCTAC--------TTT------ATTA-----AT-A--AAATTGCCGACT
gi|16 : ATAA-AGTAGAA--GTA--ATGA-AAT-ATCGCGT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGT-G-AGCGTA-a
gi|2 : TATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCG-GT-AAAAA------TCCT-AGC-AC-TGAGC-------------GTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--TTC-TCT-A--TTTACCTAATTC----------TC-CA----AACAC-AAGAAATC-ACATCGCGT-AAAGT---GTAATTTAATG----A-ATTC---TGACCTT--------AAATA-CCAT---A-GTT-CACCT-ATAA-TTCACTT-TTAT-TCTA-TTTTT----CAAAATTC-TG-TTTT-GACAA-GCGC--------------------TT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-AAGAA-AA---TAAAATATTATGTTTCTGC-AATATTTCAGATATTTCT-TATC-AATATT-T-AT-TTA--TACAAGACTA-AATGTA---ATCA-T-TTCC-AACCAG-GCG--CT-CCAA--TTAAGTTGGA--A-TTGTATC--C-T--G-C-TCGAAAA-AT-C-AATGAATACGACA-TTTCA-CT-ATCTGCCTTTCAAATTCCCCACAACGCGCAAGTTCAATAAG-----ACTCT-CACTC--T-CCC-TT-A-TTTTGGAA-T-A---TGATCA-T-TTGG---AT-T------C-T-TACGG--AGACGCATATTCGGGGCCCCAC-GGT-GCTTAATTTTTCATAT--T-------GTA-AT-A-CAAGAAAA--A---AC--AGACTATAATAT-AT--T-GTGATATAATTTTTCT-------TAAC---ATA-A--CAT-TATC-AT--TCAACTTG--ATGG-TAGTAAATATTAT--TACAG---GTGAAAAT-GTGAC-GTCCACG--G-G---TGTAAATGGCC-CTTGTCTATAAA-ACAG-AATTTT-GAAAAATATGG-AATAAAAGTGGATTCGAG-GTGCGAAACTG-A-GGGCGGGCTACTGAA-GGTCAGGAA---TCATTAATTGAC-ATTAA-C-GGAT--GTGATTTCTTGTGTTCTGGA-GTGGGTCGAATTAGGTTAGACTAGAGAAGAACTCTGGAAAA---C-CGTTGCCA---TACT-G-T-CG-CT-TCGC-T--CGCT--ACAGC-TCGCG-AAGATCAA-GTG-CTACTAAGGATTTT-ACC-GG-------TAT-TTTAGCATA-C-TTATAC--------TTT------ATTGA----AT-AACAAGTTG-CGACTCCc
gi|3 : cacaggagtcggcaatttTATCAATAA-AGTAAAAAAGGA-TG-GA------TCG-GT-AAAAAAT----TACT-ACC-AC-TGAGCT-T-CGC-GGAGCGTA-GCG---GAAGCTGACAG-GA-TGGCA-CGTGTTTCCC-GA----T-TCTT-C-TCTCA--TTTACCT--TCCGA--CC--ACTC-CA----AACACGAAGAAATC-ACATC-CGT-AA--T---GTCA--TAATGGAAAA-ATTC--C-GACCTC-------TAAATA-CCA---CA-GTT-CCCCT-CCGA-TCC--CT-TTAT-TCCA-TTTTT----GTCAACTC-TG-TTT--GACA--CAGCGC---ATTT--AC---ACATTC----CG-T----GTTGCA----CGTCAAC---ATTTA-TG-TAGATCAA---TAAA-TATTATGTTTCTGTTAATATTTCTGAT---------TC-AATATT-T-ATGTTA--TAAAATA-TA-AATG-A---AC---T-TAC--AAACAG-CCG--CT-CCAAAGTT--GTTGGACCA-TT-T-TC--AAT--GCC-CCGAAAC-AT-CAAATGGATACGA-ACTTTCA-CT-----G-CTC-CAAATTCCCCACAA----CGAG----ATAAA-----A--TT-TA-TC--T-CCCTTTTATTTTTGAAA-T-A-T-TGA-CA-T-T-GG---ATATATCCATTAT-TACGG--AGACG-ATATTTG------CAC-GGTTGAT--ATTGTTAT-ATCAT-------GTTAATCA-TAAAAAAA--ATTAACAAAGACTAT-ATAT-AT--T-GGTAA-T-ATTTTTTT--AAATCTAACCCAATATA--C-T-TA-CCAT-AT----TTG--AT-G-TT--AAAAACTATCCTACA----GT--AAATTGTGACCGTCACCA-CG-G-ATTG-GAATGCCG-CTTGTC--CAAACACAG-AGTTTTTGAAAAACATGGAAGGAAAAGTG----CGGA-GGG---AACTGTACGGG-G---TAATTAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-CCGGATA-GTAGTTTTCTGTGTTTTGGACGT-GGTCGAAT-AAG-TAAAATAGAGAAAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-TACG-CTCTCGC-T--CGCTG-AC-GCATCGCGAAAGCTC-A-GT--GTAGTAT--TTTTT-ACC-GA------------TCA-C-TA-CTTTCTAC--------TTTATGTTTATTG-----AT-A--AAATTGCCGACTC
gi|4 : ggagtcggcaatttTATCAATAA-AGTAGAG--TTA-TGTGACAAT-ATCG-GT-AAAAA------T-CT-AGC-A--TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGA----T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC--A----AACAC-AAGAA-TC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------CAAATA-CCCT--CA-GTT-CACCT-CGAA-TCCACTT-TTAT-TCCA-TTTTT----CAAAATTC-TG-TTTT-GACAA-CGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-TA-AATG-A---AC---T-TACCAAAACAG--CG--CTCCCAAAGTT--GTTGGAC-A-TT-T-TC--CAT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATT-CCCACAA-ACGCAAGT---ATAAG-----A---T-TA-TC--T-CCCTTT-A-TTTTTGAA-T-A-T-TGA-CA-T-TTGG---ATAT------CAT-TACGG--AGACG-ATATATG------CAC-GGT-GGT--ATTTTTTTTAT-AT-------GT--AT-A-T----AAA--A---ACAAAGACTAT-AAAT-ATA-T-GGTAAAT-ATTTTTTT--AA---TAAC---ATATAGGC-C-TA-C-AT-ATCAACTTG--AT-G-TA--TAATATTATC-TACA----GT--AAAT-GTGAC-GTCCACA-CG-G-ATTGTAAATGGCCGCTTGTC--AAAA-ACAG-AATTTT-GAAGAA-ATGGAAATAAAAGTGGATTCGAG-GTG---GACTG-A-GGG-G---TATTGAA-GGTCAGGAA--TTCATTAATTGAC-ATT-A-C-GGAT--GTGATTTCTTGTGTTTTGGA-GT-GGTCGAATTAGG-T--AATAGAG-AAAA-TCTGGAAAA---CACGTTGCCA---TCCT-G-T-CG-CT-TCGC-T--CGCT--AC-GC-TCGCG-AAGCTC---GTG-CTAGGA---TTTTT-ACC-GA-------TAT-TTCA-CATA-C-TTCTAC--------TTTA-----ATTG-----AT-A--AAATTGCCGACTGCT
gi|5 : TATCAATAA-AGTAGAAT-GTAATGTGA-AATTAT-G-GTGAAAAA------TTCCGAGCGAC-TGAGCT---CGC-G-AG-GTA-GCGAGCGAAGC-GACAG-GAATGGCAA-GT-TTTTCCAGAATTTT-T--C-C-TCT-A--TTTAC-TAATTCGA--C---ACTC-AG----AACAC-AGAAAATCCACATC-CGT-A---T---GTCAAT--ATG----ATATTC---TGA---T-------TAAAT---CCC--CATGTT-CACCT-AGAAATTCACTT-T-ATGTCTA-TTTTT----TCAAATTC-TG-TTT--GACAA-CGGC-TGCAATTTG-ACCAGA-ATTT----CGGT----GT-G-AAAGTCGTCA-CG--ATTTACTGGTA-AT-AAACATCAAATATTATGTTT-TGT-AATATTTCAGAT--TTCT-TAT--AATATT-CCATGTTA--AAGAATA-TATAATG-A----C---T-TACCAAA-CAGGCCG--CT-CAAAAGTT--GTTGGAC-A-TT-T-TCCTCAT--GCC-TCGAAAC-AT-C-AATGAATCCGA-A-GTTTA-CT-ATTTG-C-TTCAAATTCCCCACAA-ACGCAAGT---ATAAA---------T-TA-TC--TCCCCTTT-A-TTTTTGAA-T-A-T-TTA-CA-CATTTG---ATAT------CAT-TACCGCCGAACG-A-ATCTG------CACTGGT-GAT--A-TTTTTTTAT-AT-------GT--AT-A-TAAAAAAAT-A---AC-GAGAC-AT-ATAT-ATTGT-GGT-AAT-ATTTTTTTTAAA---TAA----ATATAGGC-C-TA-C----ATCAATCTGGAAT-GCTA--TAAAATTATCTTACA----G----AAT-GTGAC-GATCACGACGTG-ATTGTAAATGG-C-CTTGT---CAAA-ACAGAAATTTT-GAAAAA-ATGGGACTAAAAGTGG-TTCCAG-GTG---AACTG-A-GGG-------TTGAATGGTCAGGAA--TTCATTAATTGAC-ATT-AGC-GGATATGTGATTTCTTGTG-TTTGGA-TT-GGTCGAATTAGG-T-AAATAAAG--AAA-TCTGGAACA---CACGTTGCCA---TCCTGG-T-CG-CT-TCGCGT--CGC
gi|6 : gagtcggcgtaattttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCG-GT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-T-GCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTC---------AATACCCCT--CA-GTTCCACCT-CGAA-TCCACTT-TTAT-TCCATTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGTCA-C---ATTTACTG-TAAAT-AA---TAAAATATTATGTTTCTGT-AATATTTCAGATATTTCT-TATC-AATATT-T-ATGTTA--AAAAATA-T--AATG-A---AC---T-TACC--AACAG-CCG--CT-CCAAAGTT--GTTGGAC-A-TT-T-TC--CAT--GCC-TCGAAAC-AT-CAAATGAATATGA-A-TTTCA-CT-ATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAG-----A--TTATA-TC--T-CCCTTT-ATTTTTTGAA-T-AGT-TGA-CA-T-TTGG---ATAT------CATGTACGG--AGACG-ATATA-G------CACAGGT-G
gi|7 : aacggcaatttTATCAATAA-AGTAGAA--GTA-TGTGA-AAT-ATCG-GT-AAAAA------TCCT-AGC-AC-TGAGCT-T-CGC-G-AGCGTA-GCGAGCGAAGC-GACAG-GA-TGGCAACGTGTTTTCCAGAT---T-T--T-C-TCT-A--TTTACCTAATTCGA--CC--ACTC-CA----AACAC-AAGAAATC-ACATC-CGT-AA--T---GTCAATTAATG----A-ATTC--CTGACCTT-------C-AATACCCCT--CA-GTTCCCCCT-CGAA-TCCACTT-TTAT-TCTACTTTTT----CAAAATTC-TG-TTTT-GACAAGCGGC-C---ATTT--AC---A-ATTT----CG-T----GT-G-A----CGACA-C---ATTTACTG-TAGAT-AA---TAAATTATTATGTTTCTGT-AATATTTCAGATATTTCTATATCAAATATA-T-ATGTT---AAAAATA-TAGAATG-ACGTAC---T-TACC-AAACAG-CCG--CT-CCAAA-TT--GTTGGAC-ATTT-T-TC--CAT--GCC-TCGAAACAAT-CAAATGAATACGA-A-TTTCA-CTAATCTG-CTTTCAAATTCCCCACAA-ACGCAAGT---ATAAGTATGCG--TT-TC-TCCTT-TCCCTT-ATTTTTTGAATT-A-T-TGA-AATT-TTGG---ATAT------t
gi|8 : cacaggagtcggcaatttTATCAATAACAGT------TTA--GT-A-GAT-ATCG-GT-AAAAAAAAAATTATT-A-C-ACATGAGCT-T-CGC-A-GGCGAA-GCGGGC--------TAGTGA-TGGCAACGTGTT--CCAGA----T-T--T-TATCT-T--TTTACC-AATTCGA--CC--ACTG-CA----AACAC-AAG-GATC-ACATC-CGTAAA--TG--GTCAATTAATA----A-ATTTG-CTTACCTT--------AAATA-CCCTCCCATGTT-C-----CGCG-TCCAC-T-TCAT-TCCA-
gi|9 : caggcaattc-T--CGCT--AC-------CG-AA-CTC-T-GTG-GTAGTA---TTTTT-ACC-GA-------TAT-CTCG-CATA-C-TTCTAC--------TTT------ATTGATCATAT-A--AAATTGCCGACTCCTgatgactgaaatagacgtttcctctgtttaaaatctactgcttcgactattcgagagtccaaaccactatttacagtaaattcattattgggtacaattaaatgaatattgggtaccattcaaataaaattcttaaagaattaatactgtacccaaca
gi|9 : atGCG-AAGCTC-A-GTG-GTAGTA---TTTTT-AAC-GATACTCAGTAT-CTCA-CA-A-C-TTCTAC--------TTTA-----A-TG-----AT-A--AAATGGCCGACagctcagtggtagtatttttaacgatactcagtatctcacaacttctactttaatgataaaatggccgac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAATCCCTTGCAAAGATGCAAAACTTGCTTCCACATTTATTCTTGAAATATTGAAATCGAATACATCTAATAAACGAAAATGAT