lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222222222222222 111 1111 1111 11 111 22 111 000000000000000000000000000000000000000000000000000 11111 11 11 2222 1111 22 11 11 11 222222222 22 111111111 2222 2222222222 222222222222 1 111 111 222 9999999999999999999999999999999
lowQualScore : 0 1 5 4 77 8 6 555555555555555555 000 8 3333 7777 11 6 8 88 8 111 00 444 8 000000000000000000000000000000000000000000000000000 55555 9 33 88 88 0000 3333 55 22 6 00 99 3 333333333 66 22 88888 5 66 3 555555555 2222 6 7777777777 2 777777777777 5 111 111 1 444 77 2222222222222222222222222222222
lowQualScore : . . . . .. . . .................. ... . .... .... .. . . .. . ... .. ... . ................................................... ..... . .. .. .. .... .... .. .. . .. .. . ......... .. .. ..... . .. . ......... .... . .......... . ............ . ... ... . ... .. ...............................
lowQualScore : 8 4 7 3 99 7 0 777777777777777777 000 0 0000 0000 00 0 0 66 2 888 88 000 0 111111111111111111111111111111111111111111111111111 88888 2 88 22 22 8888 2222 55 00 0 22 22 5 222222222 22 55 00000 7 88 7 555555555 2222 7 7777777777 5 333333333333 8 777 777 7 666 99 0000000000000000000000000000000
consensus : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GT-ATT-T-----GTGGTC-T-T-CCATGAC----TCT--GCCCCATA-CA-ATAATACTCCAAGGAC-AT---TGCTTTTGAAGATCTTTAATTTG-GTGCTG---AGTTCTG-ATCTTGGCGGT---ATTTCCACATGTTCT-CAGCGCAGCAAA-CGCCCCTCTTGC--TTTTTGT-ATTCTGGCTT--GTACAT-CT-TTTC-CGGAGTTGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAANTCAC------T--CACTTCCTCGAT--GTCTACC--G--TG-TTCAGGGTGACTG---TCTC--TTCA-NC-CTTTGG-GT----TG----ACTTTCATNATN--T--T-----AGTTTTAGTTGGCG---TTG---ATCTTTAAACCAATTTTGTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
Reference ( gi|5 ) : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGGT-G---GT-AGT-T-----GTGGTC-T-T-CAATAAC----TCT--GCCTCATA-CA-ATAATACCCCGAAGAA-AT---TGCTTTTGAAGATCTTTAATTTG-GTGCTGACCAGTTCTG-GTCTTGGCAA----ATTTCGACATGTTCTTCAACATAGTAAA-TGCTCCTCTTGC--TTTTTGC-ATTCTGATTT--GAACAT-TT-TTTC-AAGAGTTGCCATCAGCGGTGATTTTG-CTTCCAGGGTACACAAATTCAC------T--CACTTCCTCAAT--GTCTACC--G--TG-TTCAGGGTGACTG---TCTT--TTCA-GC-CTTTGG-GT----TG----ACTTTCATGATG--T--T-----AGTTTTATTTGGTG---TTG---ATCTTTAAACCAA-CTTGTTTG--GCTG-TG-------T--------ATCT--A---C-TGTTTTGTCTTT
gi|9 : CAGAATCCACCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GT-ATT-T-----GTGGTA-T-T-CCGTGAC----TCT--GCCCCATT-AA-ATAATACTCCATGGAC-AT---TGCTTTGGAGGATCTTTAATTTG-GTGCT----AGTTCT------T---------ATTTC--CATAT-----------GCAAA-TGCCCCTCTTGC--GTTTTGT-ATTCTGGCTT--GTACAT-CT-TTTC-CAAAGTTGCCATCAATGGTGATCTTG-CTTCCGAGGTACACAAATTCACTCATGAT--CACTTTCTCAAA--GTCTATT--G--TG-TTCAGGATGACTG---TCGC--TTCA-GC-CTTTGG-GT----TG----ACTTTCATGATC--T--T-----AG-TTTAATTGATG---TTG---GTCTTTAAACCAA-TTTGTTTG--GCTG-CG-------T--------
gi|8 : cgCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT--------AGT-T-----GTTGTA-C-T-CCATGAC----TCT--ACCCCATG-CA-ATAATACTCCAAGGAC-AT---TGCTTTTGAAGATTTTTAATTTG-GTGCTG----GTTCTG-ATCTTGGCGG----ATTTCCATATGTTCTTCA-------AAA-C-CCCCTCTTGCTTTTTTTGT-ATTCTGACTT--GTACAT-CT-TTTC-CAGAGTTGTCATCAGCGGTGATCTTT-CTTCCGAGGTACACACAATCAC------TGACACTTCCTCAAT--GTCTACA--G--TG-TTCta
gi|16 : tttcttttgtattgcctgatatagaggcacggtgttgtttctctggtatgttcctttgtttgagattttttgtggccaggatatgcaCAGAATCCGCCAAATACATAA-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GT-ATA-T-----GTGGTC-T-T-CCATTAC----TCT--GCCCCATA-CA-CTAAAACGCCAAGGAC-AT---TGTTTTTGAAAATATTTAATTTG-GTGCTG----GTAGTG-ATCTTTGCGG----ATTTCCAC
gi|7 : ttttgtattgcctgtgatagttttggttctctggaattactctttgtttgagttttcattttgccagaaaattcgCAGAATCCGCCGAAGACATCG-TGTCTGCA-AGACATCTAGTTG--GTTTATGAT-
gi|23 : acttacttgtaaatacttactcctcatcgtgctggttgcacataagaccgtcaccagagacttccaatgatgcctgtcttgagatcaatgctgtatttgtccccatgtccagcctctgtccttcatctccttctcggtggatcttttccacgtctcttttggtctgcctctcttcctcttgtcaggtcgtgtccatcgcatagcaaccaatggaatcagggtgcaacctgcaaacatgtcctatctatttcttcttttgtattgcctgagatagaggcacggtgttggttctctggtagagttctttttggccgaaatattctCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-GCGCGT-ATTAT-----GTGGTCGTAT-CACGGACGGTATCT--GTCCCATA-CA-CTAATAC
gi|18 : ttcgCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-G---gtacaagaacatc
gi|2 : aaacatattccttctccattttacttctctttgtacttggcctgacgagatagacggccagatctggtagacaatttatttcgtgacgcacagccactcattcgCG-GGTCTGGACAGACATCTA-TTGCCGTTTTCGATTG---GTGAGT-TTTTTTGTGGTC-T-TTCCATGAC----CCTTGACACCATAGCAGATAATACTCCCAGGAGCATGCGTGTTTTTGAAGATCTTTTATTTGAGCGGTG----GTTTGG-ATCTGGGAAATGTAATTTCCATTTGTTCT-CAGCATAGCAAAATGC-CCTCT-GC--TTTTTGTTATTTTGGCTTATGTACGTCTT-TTTCTCAGTGTT-CCGTCAGCTGTGATCTTAACTTCC-GAGTACACAAATTCAC------T--CACCT-CTCGATA-GTCGACCGAG--TG-TTCAGG--GATTA---CATC--CTCA-TT-CTTTGG-GTAG--TGTGGTACTTTCATTATATCT--T-----AGTTTTAGTTGGCG---TTG---ATCTTTAACCCAATTTTGTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTT
gi|12 : -AT---TGCCCTTAAAAATCCTAATTTTG-GTGTT----AGTGCTGAGTTTTGTTGATC--ACCTCTAGATGTTTCGCAGTGCAGCACA-CACTCCTGTGAC--TTTGGAA-ATACGAGCTA--GTACAT-CTGCTTC-TGAAAC--CCGGCTGTGGTGATCTTG-CCCTCTAGGTATACAAAGTCTG------T--GACTTCTTTAATTTATGTACC--A--TC-T--AGGGTGA-TGAATTCAT--TTGA-----TTTACTGT----TG----ACCTTCATGATC--T--T-----AGT----TTTGGTGTTATTG---ATTTTCAGGCCA---TTTTTT--------TC-------T--------TTTT--G---C-TGTTTTtggtgt
gi|6 : C------T--CACTTCGTCAAT--GTATACC--G--TG-TTCAGGGTGACTG---TCTC--TTCA-AC-ATTTGG-GT----TG----GCTTTCATGATC--T--T-----AGTTTTA-TTGGTG---TTG---ATTTTTTAACCAA-TGTGTTTG--ACTT-TGTTATTCAT--------GTCT--A---C-TATTTTGTCTaacaagcaggttttttttt
gi|1 : --CACCTC-TCGATA-GTCGACC--GAGTG-TTCAGGG--ATTA---CATC--CTCA-TT-CTTTGG-GTAGTGTGGT--ACTTTCATTATA--TCTT-----AGTTTTAGTTGGCG---TTG---ATCTTTAACCCAATTTTGTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTTcggatgtttcgttggcgatgagataataaggtaatataatccgcaaattccagatcttctagcctttttgtcatcatccaggtgatgccccttctccttttctttattcttctgttcattctcatgatccagtcaatgcagaaggcgaaaacaagtggactaaggagggagtcttgttacactctagtcttcaattcaaatgctttggtcaagcttagtccacatataacttgagtactgaagtccattctgatgattgcgat
gi|4 : TCTACC--G--TGGTTCAGGATGAC-G---TCTTCTTTCATGCTCTTTGG-CC----TG----ACTTTCATCAAG--T--CTTAAAAGTTTTAATTGGTG---TTGGAAAT-TTTAAACAAATTTTGTTTGGTGTTG-T--------T--------ATTC--ATATC-TGTTTTGGTTTTtggtgtctcatgtggcgatgagaagatgtagcgtaaaaccggacaatatacatccgcaacttaatctgtattatttattgcttctagcactttacaatgtcttattcgtacgctattacggttatttgtcccttggctcttgtctttacacttttggttctactattagtatcctagtcaatgcagaaggttgaaatagtagaggactaaggaggcagcgctatgtttcactccagtcttctagtttcaaatgctcatccgctcctttatcttggtttggcacacaatataacttggtattgagcaagggccttggacagcttctcacatacgagcattctgatgatgtg
gi|25 : cctctaaaattgaTCTTTACACCAG-TTTGTTTG--GCTG----------------------T--A---C-TGTTTTGTCTTggattcttctgtggcgatgagataaagtaaggccaatatcatccgcaaagtcgagagcttctaagcatttctgtcagatcccatgtggatgccccttcctcttggttcgttttaccactttggttcatgatccagtcaatggcaggaagggtgaaaagtttgggaccttaaaggatacaaccttgttttcactccagttcttcaaattcaaatggctttggtcaagcttggggttccacatataacttgagcacttgaagtccacataagaggattttgaaa
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATGTCACAGTGTCGGTGAGATAGCAGTGTATATATCATCTGCCAAAATCGAGATTCTTCAAGCATTTCTCCTAAAGTCCAGCAATTTCCGTCCGCTTGCTTTTTGTTGTTTCCTCGCATGCGACCCTAGTCATTGCAGAATTTGTGAAGAAGAACAAGGGAGAGTAGATATTCCCTGTTTTACTCCGGTATTCAATTTGAACTTAGTCTGAGATGTTTGATCCACAGATCCCACTCTCGATGTTGAGGTCAATGTATAGCCATCTTATATGAGTGAGTGAGTTTATGTGGGATCCATAATGTCTACGAATTCTTCTAATGCAAGGTGGTTACACTGT
Unaligned ( gi|10 ): TAATCCTCTTCGTACTGATTCTATATAAGGCCATTACCAGAGACTTCCATGCTGGTCTGGCTTGTGTCCATCTTTGAACCTGTCCCAATGACCAGTTGATCTCCTTCATTTCTTTCTTAAGTTTACGATCTCCTCCAGATTCTCTTTTGTTCTTGCTCTCTTTCTCTTGCCAAGTTGCCAGGTAGTGTCCATCTCAAGTCCATCCTTGGAATGGAGGTTGGGTACCTTTTACTTTTAAAAGTGCACTATCCACAACCACTTTCTTTGAGAGAGGGGTGGTGTTAGTCCTACGGTACAGCTCTTCATTTGATTTAGCCAGACAATGCGAAGTAATCTGCGCGAAGATAGCGGGTCTG
Unaligned ( gi|11 ): CATGTCGGTGAGATAGCAGTGCTATATTATCTGCGAAATCGCGATATGCAGGCATTTCTGCCAAAGTTTAGCTGCTAATCATGTCTGCTTGTTTTGGTGGTTTCTCGTATGACCCAATCAATGCAGAATGTGAAGAGAAGGGCGGGAGAGTATACAACCCTGTTTTACTCCGGTATTCAATTTGAACTCGTCTGAAAGGTTTGATCTACATATTGCTCTGGCATTTAAGCTGGTGTATTGCATCTTAATGATGAATATGACTCTATCTGGGATCCTATAATGTCTGAGAATCCTTTCTAAGGCAAGGGTTAACAGTG
Unaligned ( gi|13 ): ATTGCTCTTAGAAATCCTTATTTTTTGAGGTGTTAGTGCTGAGCTGTTGTTGATCTCCAGATCGTTTCGCAGTGCAGGCATACGTTTCCTGGGCTTTGGAAATCGACCTAGTACATCTGCCTCCGAGTCCTTCGTCTAGTTTGGGATCTACCTCTCTGTACCGATTGGGTGATGGATTTATTTGATTTTACTGTTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATG
Unaligned ( gi|14 ): TACTTACTTAGTCCTCTTCGTGCTGGGTTACACACAAGGCCGTCGCCAGAGACTTCCAATAATGCCTGTCTTGGGACCGATGCTGTACTTGTCCCCATGTCCATTCTCTGTCTTTCATCTCATTCTCGGTGGATCTTCTCCAAGTCTCTTTTGATCTGCCTCTCTTCCTCTTGCCAGATGGTGTCCATCGCATAGCAACCCTAGGGATGGGACCAGGGTGCATCCTGCAAACATGTCCTACCCA
Unaligned ( gi|15 ): GTCTCTGTGACTATGAGATAGTAAGTAATATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGAGGTGCCCTTTTCTTGTTCTTTACGCTTTTTGTTCATCATCCAGTCAATGCAGAGGACATGTGTTCACTCCAGTCTTCAATCAAATGCTTCGGTCAAGCTTGTTTGTCCACATATAACTTGAGCAATGAAGTCCATATAGAGTTATTTTGATGGTGGC
Unaligned ( gi|17 ): TTGGTCCTCTTCGCTCCGACCGGAGCACAGAGCCTGCACAATAGACCTCCATCGTCTTCTGTCTTGGGGTACTCTCCTCGCTTCACTCCAGGTTGTGTTACTGTCCTTGATCTGCTTGGAGAGTTCTTCGCTAAGTGTTGGCAGATCTTCCTCTCTTTCTTTTC
Unaligned ( gi|19 ): CTTCAATTCAAGTACCATTTAGGGTGATTGATTCATTTGATATTCTGTTGAGCCCCATGGTCTTAGTTTGGTGTTTTTCAGGCCAATATTTTTCTGCTGTTTTAACAAGTTGGTTGATTTTTTTCAGATTGCACGTCAC
Unaligned ( gi|20 ): ATCGCATATCAACCCTTGGGTTGGAAACAGGGTGCATCCTGCAAATATTTCTTATCCATTTCCATTTCTTTTGTATTGCCTGATATAGAGGCACGATGTTGTTTCTCTGGTATGTTCCTTCGTTTGAGATTTTC
Unaligned ( gi|21 ): AATTACGTAATCCTCTTTGTTCTGATCAGCACATAAAGCCATCACCAGCGACTTCCATGCTGGTCTGTCTTGTGTCAATCTTTGGACCTGTCCATACGTCCAGTTGATACCTTTCATTTC
Unaligned ( gi|22 ): TACTTTACTTACTCAATCTTTCACCTACGTTGCTGGGTATAAAATATGCACATAAAAGGCCGTCACCAGAGGACCCTCCAATGATAAAATATGTCGTGGGAACCAATGCAGTATTTGTC
Unaligned ( gi|24 ): TTAGTCCTCTTCGTTTCGTTCGGAACATGCTCTGTCTTGGGCTGCTCTCTTGGCTTCACCCAAGGTGATGCTGTTTTTCTGGACCTCTGCCTG
Unaligned ( gi|26 ): TGTCACCAGAGTCTTCCAACAATGCCTGTCTTGGGACCAATGCTGTACTTATCC
Unaligned ( gi|27 ): TTACTTACTTATTCCTCTTCGTGATGGGGTGCACATAAGACCATCACCAG
Unaligned ( gi|28 ): GTCTGTTAGTATAGCATTTATCTGGGTCAAACTTCCAAACA
Alignments
lowQualScore : 1 111 2222222222 1 1111 2222222222 22222 44444444 2222222222222222 11 1 1 111111 1 1111 11 1111 222222222222 11 11 111 111 7777777777777777777777777777777
lowQualScore : 7 0 5 2 66 6 5 000 5555555555 3 6 4444 99 6 6 6 6 888 5555555555 5 66666 1 66 44444444 4 6 3333333333333333 5 7 99 88 3 55 3 0 77 8 1 999999 77 0 1 4444 33 5 5 1 33 77 4444 777777777777 55 1 77 1 55 000 5 1 000 0 9 888 66 4444444444444444444444444444444
lowQualScore : . . . . .. . . ... .......... . . .... .. . . . . ... .......... . ..... . .. ........ . . ................ . . .. .. . .. . . .. . . ...... .. . . .... .. . . . .. .. .... ............ .. . .. . .. ... . . ... . . ... .. ...............................
lowQualScore : 9 0 0 5 99 5 0 000 8888888888 3 7 2222 22 7 7 7 7 888 0000000000 7 33333 6 00 11111111 0 7 3333333333333333 2 2 22 88 2 88 3 5 55 0 0 222222 99 1 4 0000 88 0 0 7 00 99 9999 444444444444 77 0 99 0 77 000 3 4 000 2 4 888 99 8888888888888888888888888888888
consensus : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCANAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTCTACCG--TG-TTCAGGGTGACTGTCTC--TTCAN--CCTTTGG------GT----TG--ACTTTCATGA--TCT--TA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
Reference ( family-3462 ) : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGGT---ATTTCCACAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAANTCAC------T--CACTTCCTCGA--T-GTCTACCG--TG-TTCAGGGTGACTGTCTC--TTCAN--CCTTTGG------GT----TG--ACTTTCATNA--TNT--TA---GTTTTAGTTGGCGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
gi|1 : --CACCTC-TCGA--TAGTCGACCGAGTG-TTCAGGG--ATTACATC--CTCAT--TCTTTGG------GTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTT
gi|12 : AT---TGCCCTTAAAAATCCTAATTTT----------G-GTGTT-A---GTGCTGAGTTTTGTTGATC--ACCTCTAGAT-G-TTTCG-CAGTGCA-GCACACACTCCTGTGAC--TTTGGAA-ATACGAGCTA--GTACATCTGCTTCTGAAAC---CCGGCTGTGGTGATCTTG-CCCTCTAGGTATACAAAGTCTG------T--GACTTCTTTAATTT-ATGTACCA--TC-T--AGGGTGA-TG--AA--TTCA-----TTTGATTTACTGT----TG--ACCTTCATGA--TCT--TA---GTTTTGG-TGTTATTG---ATTTTCAGGCCATTTTTTTCTTTTT--GCTG-Ttggtgtctcatgtggcgatgagaagatgtagcgtaaaaccggacaatatacatccgcaacttaatctgtattatttattgcttctagcactttacaatgtcttattcgtacgctattacggttatttgtcccttggctcttgtctttacacttttggttctactattagtatcctagtcaatgcagaaggttgaaatagtagaggactaaggaggcagcgctatgtttcactccagtcttctagtttcaaatgctcatccgctcctttatcttggtttggcacacaatataacttggtattgagcaagggccttggacagcttctcacatacgagcattctgatgatgtg
gi|13 : AT---TGCTCTTAGAAATCCTTATTTTTTGAGGTGTTA-GTGCTGA---G--CTGT-TGTTG--------ATCTCCAGATCGTTT-CG-CAGTGCAGGCATACGTTTC-CTGGG--CTTTGGA-AATC-GACCTA-GTACATCTGCCTCC-GAGT-tttaacaagcaggttttttttt
gi|16 : CAGAATCCGCCAAATACATAA-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TA-TGTGGTCTT-CCATT-AC----TCT--GCCCCATA-CA-CTAAAAC-GCCAAGGA-CAT---TGTTTTTGAAAATATTTAATTT----------G-GTGCTG----GTAGTGA-TCTTTGCGG----ATTTCCACccttcgtctagtttgggatctacctctctgtaccgattgggtgatggatttatttgattttactgttgcctcttgttgatcttagtttctggtgtattgatttttcagcatttattttcccttgctgttttaccccaaaactgttaggttttttcttacatg
gi|18 : ttttgtattgcctgtgatagttttggttctctggaattactctttgtttgagttttcattttgccagaaaattcgCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-G---
gi|2 : aaacatattccttctccattttacttctctttgtacttggcctgacgagatagacggccagatctggtagacaatttatttcgtgacgcacagccactcattcgCG-GGTCTGGACAGACATCTA-TTGCCGTTTTCGATTG---GTGAGTTTTTT-TGTGGTCTTTCCATG-AC----CCTTGACACCATAGCAGATAATAC-TCCCAGGAGCATGCGTGTTTTTGAAGATCTTTTATTT----------GAGCGGTG----GTTTGGA-TCTGGGAAATGTAATTTCCATTT-G-TT-CT-CAGCATA-GCAAAATGCCCTCT-GC--TTTTTGTTATTTTGGCTTATGTACGTCT-TTTTCTCAGTGTTCCGTCAGCTGTGATCTTAACTTCCGAG-TACACAAATTCAC------T--CACCTC-TCGA--TAGTCGACCGAGTG-TTCAGGG--ATTACATC--CTCAT--TCTTTGG------GTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTT
gi|23 : CAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-GCGCGTA------TTATGTGGTCGTATCACGGACGGTATCT--GTCCCATA-CA-CTAATACGTACAAGAA-CAT---tggtgt
gi|25 : ttcgTCTTTACACCAGTTT----GTTTG--GCTG-T-----------------------A---C-TGTTTTGTCTTc
gi|4 : TCTACCG--TGGTTCAGGATGAC-GTCTTCTTTCATGCTCTTTGG------CC----TG--ACTTTCATCAAGTCT--TAAAAGTTTTAATTGGTGTTGGAAAT-TTTAAACAAATTTT---GTTTGGTGTTG-T--------T--------ATTC--ATATC-TGTTTTGGTTTTggatttctcggtggcgatgagataataaggcatat
gi|5 : cctctaaaattgaCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGGT-G---GTA------GT-TGTGGTCTT-CAATA-AC----TCT--GCCTCATA-CA-ATAATAC-CCCGAAGA-AAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGACCAGTTCTGG-TCTTGGCAA----ATTTCGACAT-G-TT-CTTCAACATA-GTAAATGCTCCTCTTGC--TTTTTGC-ATTCTGATTT--GAACATTT-TTTCAAGAGT-TGCCATCAGCGGTGATTTTG-CTTCCAGGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTCTACCG--TG-TTCAGGGTGACTGTCTT--TTCAG--CCTTTGG------GT----TG--ACTTTCATGA--TGT--TA---GTTTTATTTGGTGTTG---ATCTTTAAACCAA-CTT---GTTTG--GCTG-TG-------T--------ATCT--A---C-TGTTTTGTCTTTggattcttctgtggcgatgagataaagtaaggccaatatcatccgcaaagtcgagagcttctaagcatttctgtcagatcccatgtggatgccccttcctcttggttcgttttaccactttggttcatgatccagtcaatggcaggaagggtgaaaagtttgggaccttaaaggatacaaccttgttttcactccagttcttcaaattcaaatggctttggtcaagcttggggttccacatataacttgagcacttgaagtccacataagaggattttgaaa
gi|6 : C------T--CACTTCGTCAA--T-GTATACCG--TG-TTCAGGGTGACTGTCTC--TTCAA--CATTTGG------GT----TG--GCTTTCATGA--TCT--TA---GTTTTA-TTGGTGTTG---ATTTTTTAACCAA-TGT---GTTTG--ACTT-TGTTATTCAT--------GTCT--A---C-TATTTTGTCT
gi|7 : CAGAATCCGCCGAAGACATCG-TGTCTGCA-AGACATCTAGTTG--GTTTATGAT-cggatgtttcgttggcgatgagataataaggtaatataatccgcaaattccagatcttctagcctttttgtcatcatccaggtgatgccccttctccttttctttattcttctgttcattctcatgatccagtcaatgcagaaggcgaaaacaagtggactaaggagggagtcttgttacactctagtcttcaattcaaatgctttggtcaagcttagtccacatataacttgagtactgaagtccattctgatgattgcgat
gi|8 : acttacttgtaaatacttactcctcatcgtgctggttgcacataagaccgtcaccagagacttccaatgatgcctgtcttgagatcaatgctgtatttgtccccatgtccagcctctgtccttcatctccttctcggtggatcttttccacgtctcttttggtctgcctctcttcctcttgtcaggtcgtgtccatcgcatagcaaccaatggaatcagggtgcaacctgcaaacatgtcctatctatttcttcttttgtattgcctgagatagaggcacggtgttggttctctggtagagttctttttggccgaaatattctCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-A---GT----------TGTTGTACT-CCATG-AC----TCT--ACCCCATG-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATTTTTAATTT----------G-GTGCTG----GTTCTGA-TCTTGGCGG----ATTTCCATAT-G-TT-CT-T----CA---AAAC-CCCCTCTTGCTTTTTTTGT-ATTCTGACTT--GTACATCT-TTTCCAGAGT-TGTCATCAGCGGTGATCTTT-CTTCCGAGGTACACACAATCAC------TGACACTTCCTCAA--T-GTCTACAG--TG-TTC
gi|9 : tttcttttgtattgcctgatatagaggcacggtgttgtttctctggtatgttcctttgtttgagattttttgtggccaggatatgcaCAGAATCCACCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTATT-CCGTG-AC----TCT--GCCCCATT-AA-ATAATAC-TCCATGGA-CAT---TGCTTTGGAGGATCTTTAATTT----------G-GTGCT-A---GTTCT------------T---ATTTCCATAT-G----------------CAAATGCCCCTCTTGC--GTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCAAAGT-TGCCATCAATGGTGATCTTG-CTTCCGAGGTACACAAATTCACTCATGAT--CACTTTCTCAA--A-GTCTATTG--TG-TTCAGGATGACTGTCGC--TTCAG--CCTTTGG------GT----TG--ACTTTCATGA--TCT--TA---G-TTTAATTGATGTTG---GTCTTTAAACCAA-TTT---GTTTG--GCTG-CG-------T--------
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATGTCACAGTGTCGGTGAGATAGCAGTGTATATATCATCTGCCAAAATCGAGATTCTTCAAGCATTTCTCCTAAAGTCCAGCAATTTCCGTCCGCTTGCTTTTTGTTGTTTCCTCGCATGCGACCCTAGTCATTGCAGAATTTGTGAAGAAGAACAAGGGAGAGTAGATATTCCCTGTTTTACTCCGGTATTCAATTTGAACTTAGTCTGAGATGTTTGATCCACAGATCCCACTCTCGATGTTGAGGTCAATGTATAGCCATCTTATATGAGTGAGTGAGTTTATGTGGGATCCATAATGTCTACGAATTCTTCTAATGCAAGGTGGTTACACTGT
Unaligned ( gi|10 ): TAATCCTCTTCGTACTGATTCTATATAAGGCCATTACCAGAGACTTCCATGCTGGTCTGGCTTGTGTCCATCTTTGAACCTGTCCCAATGACCAGTTGATCTCCTTCATTTCTTTCTTAAGTTTACGATCTCCTCCAGATTCTCTTTTGTTCTTGCTCTCTTTCTCTTGCCAAGTTGCCAGGTAGTGTCCATCTCAAGTCCATCCTTGGAATGGAGGTTGGGTACCTTTTACTTTTAAAAGTGCACTATCCACAACCACTTTCTTTGAGAGAGGGGTGGTGTTAGTCCTACGGTACAGCTCTTCATTTGATTTAGCCAGACAATGCGAAGTAATCTGCGCGAAGATAGCGGGTCTG
Unaligned ( gi|11 ): CATGTCGGTGAGATAGCAGTGCTATATTATCTGCGAAATCGCGATATGCAGGCATTTCTGCCAAAGTTTAGCTGCTAATCATGTCTGCTTGTTTTGGTGGTTTCTCGTATGACCCAATCAATGCAGAATGTGAAGAGAAGGGCGGGAGAGTATACAACCCTGTTTTACTCCGGTATTCAATTTGAACTCGTCTGAAAGGTTTGATCTACATATTGCTCTGGCATTTAAGCTGGTGTATTGCATCTTAATGATGAATATGACTCTATCTGGGATCCTATAATGTCTGAGAATCCTTTCTAAGGCAAGGGTTAACAGTG
Unaligned ( gi|14 ): TACTTACTTAGTCCTCTTCGTGCTGGGTTACACACAAGGCCGTCGCCAGAGACTTCCAATAATGCCTGTCTTGGGACCGATGCTGTACTTGTCCCCATGTCCATTCTCTGTCTTTCATCTCATTCTCGGTGGATCTTCTCCAAGTCTCTTTTGATCTGCCTCTCTTCCTCTTGCCAGATGGTGTCCATCGCATAGCAACCCTAGGGATGGGACCAGGGTGCATCCTGCAAACATGTCCTACCCA
Unaligned ( gi|15 ): GTCTCTGTGACTATGAGATAGTAAGTAATATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGAGGTGCCCTTTTCTTGTTCTTTACGCTTTTTGTTCATCATCCAGTCAATGCAGAGGACATGTGTTCACTCCAGTCTTCAATCAAATGCTTCGGTCAAGCTTGTTTGTCCACATATAACTTGAGCAATGAAGTCCATATAGAGTTATTTTGATGGTGGC
Unaligned ( gi|17 ): TTGGTCCTCTTCGCTCCGACCGGAGCACAGAGCCTGCACAATAGACCTCCATCGTCTTCTGTCTTGGGGTACTCTCCTCGCTTCACTCCAGGTTGTGTTACTGTCCTTGATCTGCTTGGAGAGTTCTTCGCTAAGTGTTGGCAGATCTTCCTCTCTTTCTTTTC
Unaligned ( gi|19 ): CTTCAATTCAAGTACCATTTAGGGTGATTGATTCATTTGATATTCTGTTGAGCCCCATGGTCTTAGTTTGGTGTTTTTCAGGCCAATATTTTTCTGCTGTTTTAACAAGTTGGTTGATTTTTTTCAGATTGCACGTCAC
Unaligned ( gi|20 ): ATCGCATATCAACCCTTGGGTTGGAAACAGGGTGCATCCTGCAAATATTTCTTATCCATTTCCATTTCTTTTGTATTGCCTGATATAGAGGCACGATGTTGTTTCTCTGGTATGTTCCTTCGTTTGAGATTTTC
Unaligned ( gi|21 ): AATTACGTAATCCTCTTTGTTCTGATCAGCACATAAAGCCATCACCAGCGACTTCCATGCTGGTCTGTCTTGTGTCAATCTTTGGACCTGTCCATACGTCCAGTTGATACCTTTCATTTC
Unaligned ( gi|22 ): TACTTTACTTACTCAATCTTTCACCTACGTTGCTGGGTATAAAATATGCACATAAAAGGCCGTCACCAGAGGACCCTCCAATGATAAAATATGTCGTGGGAACCAATGCAGTATTTGTC
Unaligned ( gi|24 ): TTAGTCCTCTTCGTTTCGTTCGGAACATGCTCTGTCTTGGGCTGCTCTCTTGGCTTCACCCAAGGTGATGCTGTTTTTCTGGACCTCTGCCTG
Unaligned ( gi|26 ): TGTCACCAGAGTCTTCCAACAATGCCTGTCTTGGGACCAATGCTGTACTTATCC
Unaligned ( gi|27 ): TTACTTACTTATTCCTCTTCGTGATGGGGTGCACATAAGACCATCACCAG
Unaligned ( gi|28 ): GTCTGTTAGTATAGCATTTATCTGGGTCAAACTTCCAAACA
Alignments
lowQualScore : 1 111 2222222222 1 1111 111 33333 3333333 333333333333 11 11 111111 1111 11 11 1111 222222222222 11 11 7777777777777777777777777777777
lowQualScore : 7 0 5 2 66 6 5 000 5555555555 3 6 4444 99 6 6 6 6 000 6 33333 6 4444444 1 0 000000000000 99 5 11 99 11 8 66 88 8 1 999999 77 9 1111 777 22 4 3 2 55 33 5555 444444444444 33 66 33 888 6 888 0 7 777 66 3333333333333333333333333333333
lowQualScore : . . . . .. . . ... .......... . . .... .. . . . . ... . ..... . ....... . . ............ .. . .. .. .. . .. .. . . ...... .. . .... ... .. . . . .. .. .... ............ .. .. .. ... . ... . . ... .. ...............................
lowQualScore : 9 0 0 5 99 5 0 000 8888888888 3 7 2222 22 7 7 7 7 000 7 88888 7 3333333 0 8 444444444444 66 6 00 00 00 0 00 88 0 0 222222 99 6 1111 888 22 4 2 2 55 88 0000 888888888888 88 99 88 888 5 888 9 3 888 11 4444444444444444444444444444444
consensus : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTTG-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCATATGTT-CT-CAGCGCAGCAAACGCCCCTCTTGC--TTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTGTCTC--TTCAT--CCTTTGG------GT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
Reference ( family-3462 ) : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTTG-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCANATGTT-CT-CAGCGCAGCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTGTCTC--TTCAN--CCTTTGG------GT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
gi|1 : --CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTACATC--CTCAT--TCTTTGG------GTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTT
gi|12 : AT---TGCCCTTAAAAATCCTAATTTTG-GTGTT-A---GTGCTGAGTTTTGTTGATC--ACCTCTAGATGTTTCG-CAGTGCAGCACACACTCCTGTGAC--TTTGGAA-ATACGAGCTA--GTACATCTGCTTCTGAAAC---CCGGCTGTGGTGATCTTG-CCCTCTAGGTATACAAAGTCTG------T--GACTTCTTTAATTT-ATG---TACCA--TC-T--AGGGTGA-TG--AA--TTCA-----TTTGATTTACTGT----TG--ACCTTCATGA--T--CTTA---GTTTTGG-TGTTATTG---ATTTTCAGGCCATTTTTTTCTTTTT--GCTG-Ttggtgtctcatgtggcgatgagaagatgtagcgtaaaaccggacaatatacatccgcaacttaatctgtattatttattgcttctagcactttacaatgtcttattcgtacgctattacggttatttgtcccttggctcttgtctttacacttttggttctactattagtatcctagtcaatgcagaaggttgaaatagtagaggactaaggaggcagcgctatgtttcactccagtcttctagtttcaaatgctcatccgctcctttatcttggtttggcacacaatataacttggtattgagcaagggccttggacagcttctcacatacgagcattctgatgatgtg
gi|16 : CAGAATCCGCCAAATACATAA-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TA-TGTGGTCTT-CCATT-AC----TCT--GCCCCATA-CA-CTAAAAC-GCCAAGGA-CAT---TGTTTTTGAAAATATTTAATTTG-GTGCTG----GTAGTGA-TCTTTGCGG----ATTTCCAtttaacaagcaggttttttttt
gi|18 : ttttgtattgcctgtgatagttttggttctctggaattactctttgtttgagttttcattttgccagaaaattcgCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-G---c
gi|19 : aaacatattccttctccattttacttctctttgtacttggcctgacgagatagacggccagatctggtagacaatttatttcgtgacgcacagccactcattcgCTTCAA--T--TCAAGTACCA--T---TTAGGGTGATTGATTCATTTGAT--ATTCTG--------T----TG--AGCCCCATGG--T--CTTA---GT-----TTGGTGT------TTTTCAGGCCAATATT---TTTCT--GCTG-T
gi|2 : CG-GGTCTGGACAGACATCTA-TTGCCGTTTTCGATTG---GTGAGTTTTTT-TGTGGTCTTTCCATG-AC----CCTTGACACCATAGCAGATAATAC-TCCCAGGAGCATGCGTGTTTTTGAAGATCTTTTATTTGAGCGGTG----GTTTGGA-TCTGGGAAATGTAATTTCCATTTGTT-CT-CAGCATAGCAAAATGCCCTCT-GC--TTTTTGTTATTTTGGCTTATGTACGTCT-TTTTCTCAGTGTTCCGTCAGCTGTGATCTTAACTTCCGAG-TACACAAATTCAC------T--CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTACATC--CTCAT--TCTTTGG------GTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTTtttaacaagttggttgatttttttcagattgcacgtcac
gi|23 : CAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-GCGCGTA------TTATGTGGTCGTATCACGGACGGTATCT--GTCCCATA-CA-CTAATACGTACAAGAA-CAT---tggtgt
gi|25 : ttcgTCTTTACACCAGTTT----GTTTG--GCTG-T-----------------------A---C-TGTTTTGTCTTc
gi|4 : TC---TACCG--TGGTTCAGGATGAC-GTCTTCTTTCATGCTCTTTGG------CC----TG--ACTTTCATCAAGT--CTTAAAAGTTTTAATTGGTGTTGGAAAT-TTTAAACAAATTTT---GTTTGGTGTTG-T--------T--------ATTC--ATATC-TGTTTTGGTTTTggatttctcggtggcgatgagataataaggcatat
gi|5 : cctctaaaattgaCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGGT-G---GTA------GT-TGTGGTCTT-CAATA-AC----TCT--GCCTCATA-CA-ATAATAC-CCCGAAGA-AAT---TGCTTTTGAAGATCTTTAATTTG-GTGCTGACCAGTTCTGG-TCTTGGCAA----ATTTCGACATGTT-CTTCAACATAGTAAATGCTCCTCTTGC--TTTTTGC-ATTCTGATTT--GAACATTT-TTTCAAGAGT-TGCCATCAGCGGTGATTTTG-CTTCCAGGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTGTCTT--TTCAG--CCTTTGG------GT----TG--ACTTTCATGA--T--GTTA---GTTTTATTTGGTGTTG---ATCTTTAAACCAA-CTT---GTTTG--GCTG-TG-------T--------ATCT--A---C-TGTTTTGTCTTTggattcttctgtggcgatgagataaagtaaggccaatatcatccgcaaagtcgagagcttctaagcatttctgtcagatcccatgtggatgccccttcctcttggttcgttttaccactttggttcatgatccagtcaatggcaggaagggtgaaaagtttgggaccttaaaggatacaaccttgttttcactccagttcttcaaattcaaatggctttggtcaagcttggggttccacatataacttgagcacttgaagtccacataagaggattttgaaa
gi|6 : C------T--CACTTCGTCAA--T-GTA---TACCG--TG-TTCAGGGTGACTGTCTC--TTCAA--CATTTGG------GT----TG--GCTTTCATGA--T--CTTA---GTTTTA-TTGGTGTTG---ATTTTTTAACCAA-TGT---GTTTG--ACTT-TGTTATTCAT--------GTCT--A---C-TATTTTGTCT
gi|7 : CAGAATCCGCCGAAGACATCG-TGTCTGCA-AGACATCTAGTTG--GTTTATGAT-cggatgtttcgttggcgatgagataataaggtaatataatccgcaaattccagatcttctagcctttttgtcatcatccaggtgatgccccttctccttttctttattcttctgttcattctcatgatccagtcaatgcagaaggcgaaaacaagtggactaaggagggagtcttgttacactctagtcttcaattcaaatgctttggtcaagcttagtccacatataacttgagtactgaagtccattctgatgattgcgat
gi|8 : acttacttgtaaatacttactcctcatcgtgctggttgcacataagaccgtcaccagagacttccaatgatgcctgtcttgagatcaatgctgtatttgtccccatgtccagcctctgtccttcatctccttctcggtggatcttttccacgtctcttttggtctgcctctcttcctcttgtcaggtcgtgtccatcgcatagcaaccaatggaatcagggtgcaacctgcaaacatgtcctatctatttcttcttttgtattgcctgagatagaggcacggtgttggttctctggtagagttctttttggccgaaatattctCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-A---GT----------TGTTGTACT-CCATG-AC----TCT--ACCCCATG-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATTTTTAATTTG-GTGCTG----GTTCTGA-TCTTGGCGG----ATTTCCATATGTT-CT-T----CA--AAAC-CCCCTCTTGCTTTTTTTGT-ATTCTGACTT--GTACATCT-TTTCCAGAGT-TGTCATCAGCGGTGATCTTT-CTTCCGAGGTACACACAATCAC------TGACACTTCCTCAA--T-GTC---TACAG--TG-TTC
gi|9 : tttcttttgtattgcctgatatagaggcacggtgttgtttctctggtatgttcctttgtttgagattttttgtggccaggatatgcaCAGAATCCACCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTATT-CCGTG-AC----TCT--GCCCCATT-AA-ATAATAC-TCCATGGA-CAT---TGCTTTGGAGGATCTTTAATTTG-GTGCT-A---GTTCT------------T---ATTTCCATATG--------------CAAATGCCCCTCTTGC--GTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCAAAGT-TGCCATCAATGGTGATCTTG-CTTCCGAGGTACACAAATTCACTCATGAT--CACTTTCTCAA--A-GTC---TATTG--TG-TTCAGGATGACTGTCGC--TTCAG--CCTTTGG------GT----TG--ACTTTCATGA--T--CTTA---G-TTTAATTGATGTTG---GTCTTTAAACCAA-TTT---GTTTG--GCTG-CG-------T--------
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATGTCACAGTGTCGGTGAGATAGCAGTGTATATATCATCTGCCAAAATCGAGATTCTTCAAGCATTTCTCCTAAAGTCCAGCAATTTCCGTCCGCTTGCTTTTTGTTGTTTCCTCGCATGCGACCCTAGTCATTGCAGAATTTGTGAAGAAGAACAAGGGAGAGTAGATATTCCCTGTTTTACTCCGGTATTCAATTTGAACTTAGTCTGAGATGTTTGATCCACAGATCCCACTCTCGATGTTGAGGTCAATGTATAGCCATCTTATATGAGTGAGTGAGTTTATGTGGGATCCATAATGTCTACGAATTCTTCTAATGCAAGGTGGTTACACTGT
Unaligned ( gi|10 ): TAATCCTCTTCGTACTGATTCTATATAAGGCCATTACCAGAGACTTCCATGCTGGTCTGGCTTGTGTCCATCTTTGAACCTGTCCCAATGACCAGTTGATCTCCTTCATTTCTTTCTTAAGTTTACGATCTCCTCCAGATTCTCTTTTGTTCTTGCTCTCTTTCTCTTGCCAAGTTGCCAGGTAGTGTCCATCTCAAGTCCATCCTTGGAATGGAGGTTGGGTACCTTTTACTTTTAAAAGTGCACTATCCACAACCACTTTCTTTGAGAGAGGGGTGGTGTTAGTCCTACGGTACAGCTCTTCATTTGATTTAGCCAGACAATGCGAAGTAATCTGCGCGAAGATAGCGGGTCTG
Unaligned ( gi|11 ): CATGTCGGTGAGATAGCAGTGCTATATTATCTGCGAAATCGCGATATGCAGGCATTTCTGCCAAAGTTTAGCTGCTAATCATGTCTGCTTGTTTTGGTGGTTTCTCGTATGACCCAATCAATGCAGAATGTGAAGAGAAGGGCGGGAGAGTATACAACCCTGTTTTACTCCGGTATTCAATTTGAACTCGTCTGAAAGGTTTGATCTACATATTGCTCTGGCATTTAAGCTGGTGTATTGCATCTTAATGATGAATATGACTCTATCTGGGATCCTATAATGTCTGAGAATCCTTTCTAAGGCAAGGGTTAACAGTG
Unaligned ( gi|13 ): ATTGCTCTTAGAAATCCTTATTTTTTGAGGTGTTAGTGCTGAGCTGTTGTTGATCTCCAGATCGTTTCGCAGTGCAGGCATACGTTTCCTGGGCTTTGGAAATCGACCTAGTACATCTGCCTCCGAGTCCTTCGTCTAGTTTGGGATCTACCTCTCTGTACCGATTGGGTGATGGATTTATTTGATTTTACTGTTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATG
Unaligned ( gi|14 ): TACTTACTTAGTCCTCTTCGTGCTGGGTTACACACAAGGCCGTCGCCAGAGACTTCCAATAATGCCTGTCTTGGGACCGATGCTGTACTTGTCCCCATGTCCATTCTCTGTCTTTCATCTCATTCTCGGTGGATCTTCTCCAAGTCTCTTTTGATCTGCCTCTCTTCCTCTTGCCAGATGGTGTCCATCGCATAGCAACCCTAGGGATGGGACCAGGGTGCATCCTGCAAACATGTCCTACCCA
Unaligned ( gi|15 ): GTCTCTGTGACTATGAGATAGTAAGTAATATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGAGGTGCCCTTTTCTTGTTCTTTACGCTTTTTGTTCATCATCCAGTCAATGCAGAGGACATGTGTTCACTCCAGTCTTCAATCAAATGCTTCGGTCAAGCTTGTTTGTCCACATATAACTTGAGCAATGAAGTCCATATAGAGTTATTTTGATGGTGGC
Unaligned ( gi|17 ): TTGGTCCTCTTCGCTCCGACCGGAGCACAGAGCCTGCACAATAGACCTCCATCGTCTTCTGTCTTGGGGTACTCTCCTCGCTTCACTCCAGGTTGTGTTACTGTCCTTGATCTGCTTGGAGAGTTCTTCGCTAAGTGTTGGCAGATCTTCCTCTCTTTCTTTTC
Unaligned ( gi|20 ): ATCGCATATCAACCCTTGGGTTGGAAACAGGGTGCATCCTGCAAATATTTCTTATCCATTTCCATTTCTTTTGTATTGCCTGATATAGAGGCACGATGTTGTTTCTCTGGTATGTTCCTTCGTTTGAGATTTTC
Unaligned ( gi|21 ): AATTACGTAATCCTCTTTGTTCTGATCAGCACATAAAGCCATCACCAGCGACTTCCATGCTGGTCTGTCTTGTGTCAATCTTTGGACCTGTCCATACGTCCAGTTGATACCTTTCATTTC
Unaligned ( gi|22 ): TACTTTACTTACTCAATCTTTCACCTACGTTGCTGGGTATAAAATATGCACATAAAAGGCCGTCACCAGAGGACCCTCCAATGATAAAATATGTCGTGGGAACCAATGCAGTATTTGTC
Unaligned ( gi|24 ): TTAGTCCTCTTCGTTTCGTTCGGAACATGCTCTGTCTTGGGCTGCTCTCTTGGCTTCACCCAAGGTGATGCTGTTTTTCTGGACCTCTGCCTG
Unaligned ( gi|26 ): TGTCACCAGAGTCTTCCAACAATGCCTGTCTTGGGACCAATGCTGTACTTATCC
Unaligned ( gi|27 ): TTACTTACTTATTCCTCTTCGTGATGGGGTGCACATAAGACCATCACCAG
Unaligned ( gi|28 ): GTCTGTTAGTATAGCATTTATCTGGGTCAAACTTCCAAACA
Alignments
lowQualScore : 1 111 2222222222 1 1111 2222222222 22222 44444444 2222222222222222 11 1 1 111111 1111 11 11 2222 11 11 7777777777777777777777777777777
lowQualScore : 7 0 5 2 66 6 5 000 5555555555 3 6 4444 99 6 6 6 6 888 5555555555 5 66666 1 66 22222222 1 6 3333333333333333 5 7 99 88 3 55 3 0 77 8 1 999999 77 9 1111 777 22 4 3 2 888 33 8888 1111 33 66 33 888 6 888 0 7 777 66 3333333333333333333333333333333
lowQualScore : . . . . .. . . ... .......... . . .... .. . . . . ... .......... . ..... . .. ........ . . ................ . . .. .. . .. . . .. . . ...... .. . .... ... .. . . . ... .. .... .... .. .. .. ... . ... . . ... .. ...............................
lowQualScore : 9 0 0 5 99 5 0 000 8888888888 3 7 2222 22 7 7 7 7 888 0000000000 7 33333 6 00 33333333 5 7 3333333333333333 2 2 22 88 2 88 3 5 55 0 0 222222 99 6 1111 888 22 4 2 2 888 88 2222 2222 88 99 88 888 5 888 9 3 888 11 4444444444444444444444444444444
consensus : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
Reference ( family-3462 ) : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
gi|1 : --CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTA---CATC--CTCAT--TCTTTGGGTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTT
gi|12 : AT---TGCCCTTAAAAATCCTAATTTT----------G-GTGTT-A---GTGCTGAGTTTTGTTGATC--ACCTCTAGAT-G-TTTCG-CAGTGCA-GCACACACTCCTGTGAC--TTTGGAA-ATACGAGCTA--GTACATCTGCTTCTGAAAC---CCGGCTGTGGTGATCTTG-CCCTCTAGGTATACAAAGTCTG------T--GACTTCTTTAATTT-ATG---TACCA--TC-T--AGGGTGA-TGAATTCAT--TTGAT--TTACT--GT----TG--ACCTTCATGA--T--CTTA---GTTTTGG-TGTTATTG---ATTTTCAGGCCATTTTTTTCTTTTT--GCTG-Ttggtgtctcatgtggcgatgagaagatgtagcgtaaaaccggacaatatacatccgcaacttaatctgtattatttattgcttctagcactttacaatgtcttattcgtacgctattacggttatttgtcccttggctcttgtctttacacttttggttctactattagtatcctagtcaatgcagaaggttgaaatagtagaggactaaggaggcagcgctatgtttcactccagtcttctagtttcaaatgctcatccgctcctttatcttggtttggcacacaatataacttggtattgagcaagggccttggacagcttctcacatacgagcattctgatgatgtg
gi|13 : AT---TGCTCTTAGAAATCCTTATTTTTTGAGGTGTTA-GTGCTGA---G--CTGT-TGTTG--------ATCTCCAGATCGTTT-CG-CAGTGCAGGCATACGTTTC-CTGGG--CTTTGGA-AATC-GACCTA-GTACATCTGCCTCC-GAGT-tttaacaagcaggttttttttt
gi|16 : CAGAATCCGCCAAATACATAA-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TA-TGTGGTCTT-CCATT-AC----TCT--GCCCCATA-CA-CTAAAAC-GCCAAGGA-CAT---TGTTTTTGAAAATATTTAATTT----------G-GTGCTG----GTAGTGA-TCTTTGCGG----ATTTCCAccttcgtctagtttgggatctacctctctgtaccgattgggtgatggatttatttgattttactgttgcctcttgttgatcttagtttctggtgtattgatttttcagcatttattttcccttgctgttttaccccaaaactgttaggttttttcttacatg
gi|18 : ttttgtattgcctgtgatagttttggttctctggaattactctttgtttgagttttcattttgccagaaaattcgCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-G---c
gi|19 : aaacatattccttctccattttacttctctttgtacttggcctgacgagatagacggccagatctggtagacaatttatttcgtgacgcacagccactcattcgCTTCAA--T--TCAAGTACCA--T---TTAGGGTGATTG---ATTCATTTGAT--ATTCTG--T----TG--AGCCCCATGG--T--CTTA---GT-----TTGGTGT------TTTTCAGGCCAATATT---TTTCT--GCTG-T
gi|2 : CG-GGTCTGGACAGACATCTA-TTGCCGTTTTCGATTG---GTGAGTTTTTT-TGTGGTCTTTCCATG-AC----CCTTGACACCATAGCAGATAATAC-TCCCAGGAGCATGCGTGTTTTTGAAGATCTTTTATTT----------GAGCGGTG----GTTTGGA-TCTGGGAAATGTAATTTCCATTT-G-TT-CT-CAGCATA-GCAAAATGCCCTCT-GC--TTTTTGTTATTTTGGCTTATGTACGTCT-TTTTCTCAGTGTTCCGTCAGCTGTGATCTTAACTTCCGAG-TACACAAATTCAC------T--CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTA---CATC--CTCAT--TCTTTGGGTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTTtttaacaagttggttgatttttttcagattgcacgtcac
gi|23 : CAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-GCGCGTA------TTATGTGGTCGTATCACGGACGGTATCT--GTCCCATA-CA-CTAATACGTACAAGAA-CAT---tggtgt
gi|25 : ttcgTCTTTACACCAGTTT----GTTTG--GCTG-T-----------------------A---C-TGTTTTGTCTTc
gi|4 : TC---TACCG--TGGTTCAGGATGAC-G---TCTTCTTTCATGCTCTTTGGCC----TG--ACTTTCATCAAGT--CTTAAAAGTTTTAATTGGTGTTGGAAAT-TTTAAACAAATTTT---GTTTGGTGTTG-T--------T--------ATTC--ATATC-TGTTTTGGTTTTggatttctcggtggcgatgagataataaggcatat
gi|5 : cctctaaaattgaCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGGT-G---GTA------GT-TGTGGTCTT-CAATA-AC----TCT--GCCTCATA-CA-ATAATAC-CCCGAAGA-AAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGACCAGTTCTGG-TCTTGGCAA----ATTTCGACAT-G-TT-CTTCAACATA-GTAAATGCTCCTCTTGC--TTTTTGC-ATTCTGATTT--GAACATTT-TTTCAAGAGT-TGCCATCAGCGGTGATTTTG-CTTCCAGGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTT--TTCAG--CCTTTGGGT----TG--ACTTTCATGA--T--GTTA---GTTTTATTTGGTGTTG---ATCTTTAAACCAA-CTT---GTTTG--GCTG-TG-------T--------ATCT--A---C-TGTTTTGTCTTTggattcttctgtggcgatgagataaagtaaggccaatatcatccgcaaagtcgagagcttctaagcatttctgtcagatcccatgtggatgccccttcctcttggttcgttttaccactttggttcatgatccagtcaatggcaggaagggtgaaaagtttgggaccttaaaggatacaaccttgttttcactccagttcttcaaattcaaatggctttggtcaagcttggggttccacatataacttgagcacttgaagtccacataagaggattttgaaa
gi|6 : C------T--CACTTCGTCAA--T-GTA---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAA--CATTTGGGT----TG--GCTTTCATGA--T--CTTA---GTTTTA-TTGGTGTTG---ATTTTTTAACCAA-TGT---GTTTG--ACTT-TGTTATTCAT--------GTCT--A---C-TATTTTGTCT
gi|7 : CAGAATCCGCCGAAGACATCG-TGTCTGCA-AGACATCTAGTTG--GTTTATGAT-cggatgtttcgttggcgatgagataataaggtaatataatccgcaaattccagatcttctagcctttttgtcatcatccaggtgatgccccttctccttttctttattcttctgttcattctcatgatccagtcaatgcagaaggcgaaaacaagtggactaaggagggagtcttgttacactctagtcttcaattcaaatgctttggtcaagcttagtccacatataacttgagtactgaagtccattctgatgattgcgat
gi|8 : acttacttgtaaatacttactcctcatcgtgctggttgcacataagaccgtcaccagagacttccaatgatgcctgtcttgagatcaatgctgtatttgtccccatgtccagcctctgtccttcatctccttctcggtggatcttttccacgtctcttttggtctgcctctcttcctcttgtcaggtcgtgtccatcgcatagcaaccaatggaatcagggtgcaacctgcaaacatgtcctatctatttcttcttttgtattgcctgagatagaggcacggtgttggttctctggtagagttctttttggccgaaatattctCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-A---GT----------TGTTGTACT-CCATG-AC----TCT--ACCCCATG-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATTTTTAATTT----------G-GTGCTG----GTTCTGA-TCTTGGCGG----ATTTCCATAT-G-TT-CT-T----CA---AAAC-CCCCTCTTGCTTTTTTTGT-ATTCTGACTT--GTACATCT-TTTCCAGAGT-TGTCATCAGCGGTGATCTTT-CTTCCGAGGTACACACAATCAC------TGACACTTCCTCAA--T-GTC---TACAG--TG-TTC
gi|9 : tttcttttgtattgcctgatatagaggcacggtgttgtttctctggtatgttcctttgtttgagattttttgtggccaggatatgcaCAGAATCCACCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTATT-CCGTG-AC----TCT--GCCCCATT-AA-ATAATAC-TCCATGGA-CAT---TGCTTTGGAGGATCTTTAATTT----------G-GTGCT-A---GTTCT------------T---ATTTCCATAT-G----------------CAAATGCCCCTCTTGC--GTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCAAAGT-TGCCATCAATGGTGATCTTG-CTTCCGAGGTACACAAATTCACTCATGAT--CACTTTCTCAA--A-GTC---TATTG--TG-TTCAGGATGACTG---TCGC--TTCAG--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---G-TTTAATTGATGTTG---GTCTTTAAACCAA-TTT---GTTTG--GCTG-CG-------T--------
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATGTCACAGTGTCGGTGAGATAGCAGTGTATATATCATCTGCCAAAATCGAGATTCTTCAAGCATTTCTCCTAAAGTCCAGCAATTTCCGTCCGCTTGCTTTTTGTTGTTTCCTCGCATGCGACCCTAGTCATTGCAGAATTTGTGAAGAAGAACAAGGGAGAGTAGATATTCCCTGTTTTACTCCGGTATTCAATTTGAACTTAGTCTGAGATGTTTGATCCACAGATCCCACTCTCGATGTTGAGGTCAATGTATAGCCATCTTATATGAGTGAGTGAGTTTATGTGGGATCCATAATGTCTACGAATTCTTCTAATGCAAGGTGGTTACACTGT
Unaligned ( gi|10 ): TAATCCTCTTCGTACTGATTCTATATAAGGCCATTACCAGAGACTTCCATGCTGGTCTGGCTTGTGTCCATCTTTGAACCTGTCCCAATGACCAGTTGATCTCCTTCATTTCTTTCTTAAGTTTACGATCTCCTCCAGATTCTCTTTTGTTCTTGCTCTCTTTCTCTTGCCAAGTTGCCAGGTAGTGTCCATCTCAAGTCCATCCTTGGAATGGAGGTTGGGTACCTTTTACTTTTAAAAGTGCACTATCCACAACCACTTTCTTTGAGAGAGGGGTGGTGTTAGTCCTACGGTACAGCTCTTCATTTGATTTAGCCAGACAATGCGAAGTAATCTGCGCGAAGATAGCGGGTCTG
Unaligned ( gi|11 ): CATGTCGGTGAGATAGCAGTGCTATATTATCTGCGAAATCGCGATATGCAGGCATTTCTGCCAAAGTTTAGCTGCTAATCATGTCTGCTTGTTTTGGTGGTTTCTCGTATGACCCAATCAATGCAGAATGTGAAGAGAAGGGCGGGAGAGTATACAACCCTGTTTTACTCCGGTATTCAATTTGAACTCGTCTGAAAGGTTTGATCTACATATTGCTCTGGCATTTAAGCTGGTGTATTGCATCTTAATGATGAATATGACTCTATCTGGGATCCTATAATGTCTGAGAATCCTTTCTAAGGCAAGGGTTAACAGTG
Unaligned ( gi|14 ): TACTTACTTAGTCCTCTTCGTGCTGGGTTACACACAAGGCCGTCGCCAGAGACTTCCAATAATGCCTGTCTTGGGACCGATGCTGTACTTGTCCCCATGTCCATTCTCTGTCTTTCATCTCATTCTCGGTGGATCTTCTCCAAGTCTCTTTTGATCTGCCTCTCTTCCTCTTGCCAGATGGTGTCCATCGCATAGCAACCCTAGGGATGGGACCAGGGTGCATCCTGCAAACATGTCCTACCCA
Unaligned ( gi|15 ): GTCTCTGTGACTATGAGATAGTAAGTAATATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGAGGTGCCCTTTTCTTGTTCTTTACGCTTTTTGTTCATCATCCAGTCAATGCAGAGGACATGTGTTCACTCCAGTCTTCAATCAAATGCTTCGGTCAAGCTTGTTTGTCCACATATAACTTGAGCAATGAAGTCCATATAGAGTTATTTTGATGGTGGC
Unaligned ( gi|17 ): TTGGTCCTCTTCGCTCCGACCGGAGCACAGAGCCTGCACAATAGACCTCCATCGTCTTCTGTCTTGGGGTACTCTCCTCGCTTCACTCCAGGTTGTGTTACTGTCCTTGATCTGCTTGGAGAGTTCTTCGCTAAGTGTTGGCAGATCTTCCTCTCTTTCTTTTC
Unaligned ( gi|20 ): ATCGCATATCAACCCTTGGGTTGGAAACAGGGTGCATCCTGCAAATATTTCTTATCCATTTCCATTTCTTTTGTATTGCCTGATATAGAGGCACGATGTTGTTTCTCTGGTATGTTCCTTCGTTTGAGATTTTC
Unaligned ( gi|21 ): AATTACGTAATCCTCTTTGTTCTGATCAGCACATAAAGCCATCACCAGCGACTTCCATGCTGGTCTGTCTTGTGTCAATCTTTGGACCTGTCCATACGTCCAGTTGATACCTTTCATTTC
Unaligned ( gi|22 ): TACTTTACTTACTCAATCTTTCACCTACGTTGCTGGGTATAAAATATGCACATAAAAGGCCGTCACCAGAGGACCCTCCAATGATAAAATATGTCGTGGGAACCAATGCAGTATTTGTC
Unaligned ( gi|24 ): TTAGTCCTCTTCGTTTCGTTCGGAACATGCTCTGTCTTGGGCTGCTCTCTTGGCTTCACCCAAGGTGATGCTGTTTTTCTGGACCTCTGCCTG
Unaligned ( gi|26 ): TGTCACCAGAGTCTTCCAACAATGCCTGTCTTGGGACCAATGCTGTACTTATCC
Unaligned ( gi|27 ): TTACTTACTTATTCCTCTTCGTGATGGGGTGCACATAAGACCATCACCAG
Unaligned ( gi|28 ): GTCTGTTAGTATAGCATTTATCTGGGTCAAACTTCCAAACA
Alignments
lowQualScore : 1 111 2222222222 1 1111 2222222222 22222 44444444 2222222222222222 11 1 1 111111 1111 11 11 2222 11 11 7777777777777777777777777777777
lowQualScore : 7 0 5 2 66 6 5 000 5555555555 3 6 4444 99 6 6 6 6 888 5555555555 5 66666 1 66 22222222 1 6 3333333333333333 5 7 99 77 3 55 3 0 77 8 1 999999 77 9 1111 777 22 4 3 2 888 33 8888 1111 33 66 33 888 6 888 0 7 777 66 3333333333333333333333333333333
lowQualScore : . . . . .. . . ... .......... . . .... .. . . . . ... .......... . ..... . .. ........ . . ................ . . .. .. . .. . . .. . . ...... .. . .... ... .. . . . ... .. .... .... .. .. .. ... . ... . . ... .. ...............................
lowQualScore : 9 0 0 5 99 5 0 000 8888888888 3 7 2222 22 7 7 7 7 888 0000000000 7 33333 6 00 33333333 5 7 3333333333333333 2 2 22 77 2 88 3 5 55 0 0 222222 99 6 1111 888 22 4 2 2 888 88 2222 2222 88 99 88 888 5 888 9 3 888 11 4444444444444444444444444444444
consensus : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
Reference ( family-3462 ) : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
gi|1 : --CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTA---CATC--CTCAT--TCTTTGGGTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTT
gi|12 : AT---TGCCCTTAAAAATCCTAATTTT----------G-GTGTT-A---GTGCTGAGTTTTGTTGATC--ACCTCTAGAT-G-TTTCG-CAGTGCA-GCACACACTCCTGTGAC--TTTGGAA-ATACGAGCTA--GTACATCTGCTTCTGAAAC---CCGGCTGTGGTGATCTTG-CCCTCTAGGTATACAAAGTCTG------T--GACTTCTTTAATTT-ATG---TACCA--TC-T--AGGGTGA-TGAATTCAT--TTGAT--TTACT--GT----TG--ACCTTCATGA--T--CTTA---GTTTTGG-TGTTATTG---ATTTTCAGGCCATTTTTTTCTTTTT--GCTG-Ttggtgtctcatgtggcgatgagaagatgtagcgtaaaaccggacaatatacatccgcaacttaatctgtattatttattgcttctagcactttacaatgtcttattcgtacgctattacggttatttgtcccttggctcttgtctttacacttttggttctactattagtatcctagtcaatgcagaaggttgaaatagtagaggactaaggaggcagcgctatgtttcactccagtcttctagtttcaaatgctcatccgctcctttatcttggtttggcacacaatataacttggtattgagcaagggccttggacagcttctcacatacgagcattctgatgatgtg
gi|13 : AT---TGCTCTTAGAAATCCTTATTTTTTGAGGTGTTA-GTGCTGA---G--CTGT-TGTTG--------ATCTCCAGATCGTTT-CG-CAGTGCAGGCATACGTTTC-CTGGG--CTTTGGA-AATC-GACCTA-GTACATCTGCCTCC-GAGT-tttaacaagcaggttttttttt
gi|16 : CAGAATCCGCCAAATACATAA-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TA-TGTGGTCTT-CCATT-AC----TCT--GCCCCATA-CA-CTAAAAC-GCCAAGGA-CAT---TGTTTTTGAAAATATTTAATTT----------G-GTGCTG----GTAGTGA-TCTTTGCGG----ATTTCCAccttcgtctagtttgggatctacctctctgtaccgattgggtgatggatttatttgattttactgttgcctcttgttgatcttagtttctggtgtattgatttttcagcatttattttcccttgctgttttaccccaaaactgttaggttttttcttacatg
gi|18 : ttttgtattgcctgtgatagttttggttctctggaattactctttgtttgagttttcattttgccagaaaattcgCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-G---c
gi|19 : aaacatattccttctccattttacttctctttgtacttggcctgacgagatagacggccagatctggtagacaatttatttcgtgacgcacagccactcattcgCTTCAA--T--TCAAGTACCA--T---TTAGGGTGATTG---ATTCATTTGAT--ATTCTG--T----TG--AGCCCCATGG--T--CTTA---GT-----TTGGTGT------TTTTCAGGCCAATATT---TTTCT--GCTG-T
gi|2 : CG-GGTCTGGACAGACATCTA-TTGCCGTTTTCGATTG---GTGAGTTTTTT-TGTGGTCTTTCCATG-AC----CCTTGACACCATAGCAGATAATAC-TCCCAGGAGCATGCGTGTTTTTGAAGATCTTTTATTT----------GAGCGGTG----GTTTGGA-TCTGGGAAATGTAATTTCCATTT-G-TT-CT-CAGCATA-GCAAAATGCCCTCT-GC--TTTTTGTTATTTTGGCTTATGTACGTCT-TTTTCTCAGTGTTCCGTCAGCTGTGATCTTAACTTCCGAG-TACACAAATTCAC------T--CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTA---CATC--CTCAT--TCTTTGGGTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTG--GCTGTTG-------TTGTTCATAATCCTGA---CTTGTTTTGTCTTTtttaacaagttggttgatttttttcagattgcacgtcac
gi|23 : CAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-GCGCGTA------TTATGTGGTCGTATCACGGACGGTATCT--GTCCCATA-CA-CTAATACGTACAAGAA-CAT---tggtgt
gi|25 : ttcgTCTTTACACCAGTTT----GTTTG--GCTG-T-----------------------A---C-TGTTTTGTCTTc
gi|4 : TC---TACCG--TGGTTCAGGATGAC-G---TCTTCTTTCATGCTCTTTGGCC----TG--ACTTTCATCAAGT--CTTAAAAGTTTTAATTGGTGTTGGAAAT-TTTAAACAAATTTT---GTTTGGTGTTG-T--------T--------ATTC--ATATC-TGTTTTGGTTTTggatttctcggtggcgatgagataataaggcatat
gi|5 : cctctaaaattgaCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGGT-G---GTA------GT-TGTGGTCTT-CAATA-AC----TCT--GCCTCATA-CA-ATAATAC-CCCGAAGA-AAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGACCAGTTCTGG-TCTTGGCAA----ATTTCGACAT-G-TT-CTTCAACATA-GTAAATGCTCCTCTTGC--TTTTTGC-ATTCTGATTT--GAACATTT-TTTCAAGAGT-TGCCATCAGCGGTGATTTTG-CTTCCAGGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTT--TTCAG--CCTTTGGGT----TG--ACTTTCATGA--T--GTTA---GTTTTATTTGGTGTTG---ATCTTTAAACCAA-CTT---GTTTG--GCTG-TG-------T--------ATCT--A---C-TGTTTTGTCTTTggattcttctgtggcgatgagataaagtaaggccaatatcatccgcaaagtcgagagcttctaagcatttctgtcagatcccatgtggatgccccttcctcttggttcgttttaccactttggttcatgatccagtcaatggcaggaagggtgaaaagtttgggaccttaaaggatacaaccttgttttcactccagttcttcaaattcaaatggctttggtcaagcttggggttccacatataacttgagcacttgaagtccacataagaggattttgaaa
gi|6 : C------T--CACTTCGTCAA--T-GTA---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAA--CATTTGGGT----TG--GCTTTCATGA--T--CTTA---GTTTTA-TTGGTGTTG---ATTTTTTAACCAA-TGT---GTTTG--ACTT-TGTTATTCAT--------GTCT--A---C-TATTTTGTCT
gi|7 : CAGAATCCGCCGAAGACATCG-TGTCTGCA-AGACATCTAGTTG--GTTTATGAT-cggatgtttcgttggcgatgagataataaggtaatataatccgcaaattccagatcttctagcctttttgtcatcatccaggtgatgccccttctccttttctttattcttctgttcattctcatgatccagtcaatgcagaaggcgaaaacaagtggactaaggagggagtcttgttacactctagtcttcaattcaaatgctttggtcaagcttagtccacatataacttgagtactgaagtccattctgatgattgcgat
gi|8 : acttacttgtaaatacttactcctcatcgtgctggttgcacataagaccgtcaccagagacttccaatgatgcctgtcttgagatcaatgctgtatttgtccccatgtccagcctctgtccttcatctccttctcggtggatcttttccacgtctcttttggtctgcctctcttcctcttgtcaggtcgtgtccatcgcatagcaaccaatggaatcagggtgcaacctgcaaacatgtcctatctatttcttcttttgtattgcctgagatagaggcacggtgttggttctctggtagagttctttttggccgaaatattctCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-A---GT----------TGTTGTACT-CCATG-AC----TCT--ACCCCATG-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATTTTTAATTT----------G-GTGCTG----GTTCTGA-TCTTGGCGG----ATTTCCATAT-G-TT-CT-T----CA---AAAC-CCCCTCTTGCTTTTTTTGT-ATTCTGACTT--GTACATCT-TTTCCAGAGT-TGTCATCAGCGGTGATCTTT-CTTCCGAGGTACACACAATCAC------TGACACTTCCTCAA--T-GTC---TACAG--TG-TTC
gi|9 : tttcttttgtattgcctgatatagaggcacggtgttgtttctctggtatgttcctttgtttgagattttttgtggccaggatatgcaCAGAATCCACCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTATT-CCGTG-AC----TCT--GCCCCATT-AA-ATAATAC-TCCATGGA-CAT---TGCTTTGGAGGATCTTTAATTT----------G-GTGCT-A---GTTCT------------T---ATTTCCATAT-G----------------CAAATGCCCCTCTTGC--GTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCAAAGT-TGCCATCAATGGTGATCTTG-CTTCCGAGGTACACAAATTCACTCATGAT--CACTTTCTCAA--A-GTC---TATTG--TG-TTCAGGATGACTG---TCGC--TTCAG--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---G-TTTAATTGATGTTG---GTCTTTAAACCAA-TTT---GTTTG--GCTG-CG-------T--------
blockSeqs : G C C G CC T T CGC GAGTTTTTT T G GGTA TG G G G G GCG TTGAGGTGTT A GACCA A T GAAATGTA G C TTTCGCAGTGCAGG G G TT TT T AT G T GT A T TCATGA GA T TTT AAG AG G T T AAT AT TGCT AGTG GT AG AT AAA G GAA T TTC GT TTGTTGTTCATAATCCTGACT
blockSeqs : G C . G . A . . ATTA A . . . . . . . . . . GA T A GCGG T . TTCTTCAACATAG T T . A T A . A T . T . . T TA . . . T T . CT TT . . . . . G . T . . TGTTATTCATGTCTAC
blockSeqs : G . . G . A . . AGT . . . . . . . . . . . G T A GCAA C . TTCTCAGCATAG G T . C T . . A T . A . . C T . . . T C . . TA . . . . . A . T . . TTATTCATATC
blockSeqs : G . . G . A . . ATT . . . . . . . . . . . G T G GCGG T . TTCTTCA G T . T T . . A T . T . . G T . . . T C . . TT . . . . . T . T . . TGTATCTAC
blockSeqs : . . . G . A . . . . . . . . . . . . . . G T A T T . . . . . T . . . . . . C T . . . T C . . GC . . . . . A . T . . TAC
blockSeqs : . . . . . . . . . . . A . . . . C T . . . T C . . AC . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . GC . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : A* GCGG**** TTCTCAGCGCAG**** T* T*** ** **** ** ** TGTTGTTCATATCTAC***************
originalCons : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGAT---ATTTCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTG-TG-------T--------ATCC--A---C-TGTTTTGTCTTT
finalCons : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGA-TCTTGGCGG----ATTTCCATAT-GTTCTCAGCGCAG----CAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGTT-GCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAAT---GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTG--GCTGTGTTGTTCATATCTAC---------------TGTTTTGTCTTT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATGTCACAGTGTCGGTGAGATAGCAGTGTATATATCATCTGCCAAAATCGAGATTCTTCAAGCATTTCTCCTAAAGTCCAGCAATTTCCGTCCGCTTGCTTTTTGTTGTTTCCTCGCATGCGACCCTAGTCATTGCAGAATTTGTGAAGAAGAACAAGGGAGAGTAGATATTCCCTGTTTTACTCCGGTATTCAATTTGAACTTAGTCTGAGATGTTTGATCCACAGATCCCACTCTCGATGTTGAGGTCAATGTATAGCCATCTTATATGAGTGAGTGAGTTTATGTGGGATCCATAATGTCTACGAATTCTTCTAATGCAAGGTGGTTACACTGT
Unaligned ( gi|10 ): TAATCCTCTTCGTACTGATTCTATATAAGGCCATTACCAGAGACTTCCATGCTGGTCTGGCTTGTGTCCATCTTTGAACCTGTCCCAATGACCAGTTGATCTCCTTCATTTCTTTCTTAAGTTTACGATCTCCTCCAGATTCTCTTTTGTTCTTGCTCTCTTTCTCTTGCCAAGTTGCCAGGTAGTGTCCATCTCAAGTCCATCCTTGGAATGGAGGTTGGGTACCTTTTACTTTTAAAAGTGCACTATCCACAACCACTTTCTTTGAGAGAGGGGTGGTGTTAGTCCTACGGTACAGCTCTTCATTTGATTTAGCCAGACAATGCGAAGTAATCTGCGCGAAGATAGCGGGTCTG
Unaligned ( gi|11 ): CATGTCGGTGAGATAGCAGTGCTATATTATCTGCGAAATCGCGATATGCAGGCATTTCTGCCAAAGTTTAGCTGCTAATCATGTCTGCTTGTTTTGGTGGTTTCTCGTATGACCCAATCAATGCAGAATGTGAAGAGAAGGGCGGGAGAGTATACAACCCTGTTTTACTCCGGTATTCAATTTGAACTCGTCTGAAAGGTTTGATCTACATATTGCTCTGGCATTTAAGCTGGTGTATTGCATCTTAATGATGAATATGACTCTATCTGGGATCCTATAATGTCTGAGAATCCTTTCTAAGGCAAGGGTTAACAGTG
Unaligned ( gi|14 ): TACTTACTTAGTCCTCTTCGTGCTGGGTTACACACAAGGCCGTCGCCAGAGACTTCCAATAATGCCTGTCTTGGGACCGATGCTGTACTTGTCCCCATGTCCATTCTCTGTCTTTCATCTCATTCTCGGTGGATCTTCTCCAAGTCTCTTTTGATCTGCCTCTCTTCCTCTTGCCAGATGGTGTCCATCGCATAGCAACCCTAGGGATGGGACCAGGGTGCATCCTGCAAACATGTCCTACCCA
Unaligned ( gi|15 ): GTCTCTGTGACTATGAGATAGTAAGTAATATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGAGGTGCCCTTTTCTTGTTCTTTACGCTTTTTGTTCATCATCCAGTCAATGCAGAGGACATGTGTTCACTCCAGTCTTCAATCAAATGCTTCGGTCAAGCTTGTTTGTCCACATATAACTTGAGCAATGAAGTCCATATAGAGTTATTTTGATGGTGGC
Unaligned ( gi|17 ): TTGGTCCTCTTCGCTCCGACCGGAGCACAGAGCCTGCACAATAGACCTCCATCGTCTTCTGTCTTGGGGTACTCTCCTCGCTTCACTCCAGGTTGTGTTACTGTCCTTGATCTGCTTGGAGAGTTCTTCGCTAAGTGTTGGCAGATCTTCCTCTCTTTCTTTTC
Unaligned ( gi|20 ): ATCGCATATCAACCCTTGGGTTGGAAACAGGGTGCATCCTGCAAATATTTCTTATCCATTTCCATTTCTTTTGTATTGCCTGATATAGAGGCACGATGTTGTTTCTCTGGTATGTTCCTTCGTTTGAGATTTTC
Unaligned ( gi|21 ): AATTACGTAATCCTCTTTGTTCTGATCAGCACATAAAGCCATCACCAGCGACTTCCATGCTGGTCTGTCTTGTGTCAATCTTTGGACCTGTCCATACGTCCAGTTGATACCTTTCATTTC
Unaligned ( gi|22 ): TACTTTACTTACTCAATCTTTCACCTACGTTGCTGGGTATAAAATATGCACATAAAAGGCCGTCACCAGAGGACCCTCCAATGATAAAATATGTCGTGGGAACCAATGCAGTATTTGTC
Unaligned ( gi|24 ): TTAGTCCTCTTCGTTTCGTTCGGAACATGCTCTGTCTTGGGCTGCTCTCTTGGCTTCACCCAAGGTGATGCTGTTTTTCTGGACCTCTGCCTG
Unaligned ( gi|26 ): TGTCACCAGAGTCTTCCAACAATGCCTGTCTTGGGACCAATGCTGTACTTATCC
Unaligned ( gi|27 ): TTACTTACTTATTCCTCTTCGTGATGGGGTGCACATAAGACCATCACCAG
Unaligned ( gi|28 ): GTCTGTTAGTATAGCATTTATCTGGGTCAAACTTCCAAACA
Alignments
lowQualScore : 1 111 2222222222 1 1111 2222222222 22222 22222222 111 2222222222222222 11 1 1 111111 1111 11 11 2222 11 11 1 2222222 1
lowQualScore : 7 0 5 2 66 6 5 000 5555555555 3 6 4444 99 6 6 6 6 888 5555555555 5 66666 1 0 99999999 000 1 6 3333333333333333 5 7 99 77 3 55 3 0 77 8 1 999999 77 9 1111 777 22 4 3 2 888 33 8888 1111 33 66 33 888 6 888 0 7 777 3 3 6666666 3
lowQualScore : . . . . .. . . ... .......... . . .... .. . . . . ... .......... . ..... . . ........ ... . . ................ . . .. .. . .. . . .. . . ...... .. . .... ... .. . . . ... .. .... .... .. .. .. ... . ... . . ... . . ....... .
lowQualScore : 9 0 0 5 99 5 0 000 8888888888 3 7 2222 22 7 7 7 7 888 0000000000 7 33333 6 3 00000000 000 5 7 3333333333333333 2 2 22 77 2 88 3 5 55 0 0 222222 99 6 1111 888 22 4 2 2 888 88 2222 2222 88 99 88 888 5 888 9 3 888 3 7 7777777 3
consensus : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGATCTTGG---CG-GATT---TCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTGGCTG-TGTTGTTCAT-ATCT--AC-TGTTTTGTCTTT
Reference ( family-3462 ) : CAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTCTT-CCATG-AC----TCT--GCCCCATA-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGA---GTTCTGATCTTGG---CG-GATT---TCCATAT-G-TT-CT-CAGCGCA-GCAAACGCCCCTCTTGC--TTTTTGN-ATTCTGGCTT--GTACATCT-TTTCCGGAGT-TGCCGTCAGCGGTGATCTTG-CTTCCGAGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAT--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---GTTTTAGTTGGTGTTG---ATCTTTAAACCAATTTT---GTTTGGCTG-TGTTGTTCAT-ATCT--AC-TGTTTTGTCTTT
gi|1 : --CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTA---CATC--CTCAT--TCTTTGGGTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTGGCTGTTGTTGTTCATAATCCTGACTTGTTTTGTCTTT
gi|12 : AT---TGCCCTTAAAAATCCTAATTTT----------G-GTGTT-A---GTGCTGAGTTTTG---TT-GATCACCTCTAGAT-G-TTTCG-CAGTGCA-GCACACACTCCTGTGAC--TTTGGAA-ATACGAGCTA--GTACATCTGCTTCTGAAAC---CCGGCTGTGGTGATCTTG-CCCTCTAGGTATACAAAGTCTG------T--GACTTCTTTAATTT-ATG---TACCA--TC-T--AGGGTGA-TGAATTCAT--TTGAT--TTACT--GT----TG--ACCTTCATGA--T--CTTA---GTTTTGG-TGTTATTG---ATTTTCAGGCCATTTTTTTCTTTTTGCTG-TTTTtggtgtctcatgtggcgatgagaagatgtagcgtaaaaccggacaatatacatccgcaacttaatctgtattatttattgcttctagcactttacaatgtcttattcgtacgctattacggttatttgtcccttggctcttgtctttacacttttggttctactattagtatcctagtcaatgcagaaggttgaaatagtagaggactaaggaggcagcgctatgtttcactccagtcttctagtttcaaatgctcatccgctcctttatcttggtttggcacacaatataacttggtattgagcaagggccttggacagcttctcacatacgagcattctgatgatgtg
gi|13 : AT---TGCTCTTAGAAATCCTTATTTTTTGAGGTGTTA-GTGCTGA---G--CTGTTGTT--------GATC---TCCAGATCGTTT-CG-CAGTGCAGGCATACGTTTC-CTGGG--CTTTGGA-AATC-GACCTA-GTACATCTGCCTCC-GAGT-aacaagcaggttttttttt
gi|16 : CAGAATCCGCCAAATACATAA-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TA-TGTGGTCTT-CCATT-AC----TCT--GCCCCATA-CA-CTAAAAC-GCCAAGGA-CAT---TGTTTTTGAAAATATTTAATTT----------G-GTGCTG----GTAGTGATCTTTG---CG-GATT---TCCAccttcgtctagtttgggatctacctctctgtaccgattgggtgatggatttatttgattttactgttgcctcttgttgatcttagtttctggtgtattgatttttcagcatttattttcccttgctgttttaccccaaaactgttaggttttttcttacatg
gi|18 : ttttgtattgcctgtgatagttttggttctctggaattactctttgtttgagttttcattttgccagaaaattcgCAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-G---c
gi|19 : aaacatattccttctccattttacttctctttgtacttggcctgacgagatagacggccagatctggtagacaatttatttcgtgacgcacagccactcattcgCTTCAA--T--TCAAGTACCA--T---TTAGGGTGATTG---ATTCATTTGAT--ATTCTG--T----TG--AGCCCCATGG--T--CTTA---GT-----TTGGTGT------TTTTCAGGCCAATATT---TTTCTGCTG-TTTT
gi|2 : CG-GGTCTGGACAGACATCTA-TTGCCGTTTTCGATTG---GTGAGTTTTTT-TGTGGTCTTTCCATG-AC----CCTTGACACCATAGCAGATAATAC-TCCCAGGAGCATGCGTGTTTTTGAAGATCTTTTATTT----------GAGCGGTG----GTTTGGATCTGGGAAATGTAATT---TCCATTT-G-TT-CT-CAGCATA-GCAAAATGCCCTCT-GC--TTTTTGTTATTTTGGCTTATGTACGTCT-TTTTCTCAGTGTTCCGTCAGCTGTGATCTTAACTTCCGAG-TACACAAATTCAC------T--CACCTC-TCGA--TAGTC---GACCGAGTG-TTCAGGG--ATTA---CATC--CTCAT--TCTTTGGGTAGTGTGGTACTTTCATTA--TATCTTA---GTTTTAGTTGGCGTTG---ATCTTTAACCCAATTTT---GTTTGGCTGTTGTTGTTCATAATCCTGACTTGTTTTGTCTTTaacaagttggttgatttttttcagattgcacgtcac
gi|23 : CAGAATCCGCGGTA-ACATCGCTGTCTGGA-A-ACATCTAGTTG--GTTT-TGAT-GCGCGTA------TTATGTGGTCGTATCACGGACGGTATCT--GTCCCATA-CA-CTAATACGTACAAGAA-CAT---tggtgt
gi|25 : ttcgTCTTTACACCAGTTT----GTTTGGCTG---------------T--AC-TGTTTTGTCTTc
gi|4 : TC---TACCG--TGGTTCAGGATGAC-G---TCTTCTTTCATGCTCTTTGGCC----TG--ACTTTCATCAAGT--CTTAAAAGTTTTAATTGGTGTTGGAAAT-TTTAAACAAATTTT---GTTTGG-TGTTGTTATTCAT-AT-----C-TGTTTTGGTTTTggatttctcggtggcgatgagataataaggcatat
gi|5 : cctctaaaattgaCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGGT-G---GTA------GT-TGTGGTCTT-CAATA-AC----TCT--GCCTCATA-CA-ATAATAC-CCCGAAGA-AAT---TGCTTTTGAAGATCTTTAATTT----------G-GTGCTGACCAGTTCTGGTCTTGG---CA-AATT---TCGACAT-G-TT-CTTCAACATA-GTAAATGCTCCTCTTGC--TTTTTGC-ATTCTGATTT--GAACATTT-TTTCAAGAGT-TGCCATCAGCGGTGATTTTG-CTTCCAGGGTACACAAATTCAC------T--CACTTCCTCAA--T-GTC---TACCG--TG-TTCAGGGTGACTG---TCTT--TTCAG--CCTTTGGGT----TG--ACTTTCATGA--T--GTTA---GTTTTATTTGGTGTTG---ATCTTTAAACCAA-CTT---GTTTGGCTG-TG-------T-ATCT--AC-TGTTTTGTCTTTggattcttctgtggcgatgagataaagtaaggccaatatcatccgcaaagtcgagagcttctaagcatttctgtcagatcccatgtggatgccccttcctcttggttcgttttaccactttggttcatgatccagtcaatggcaggaagggtgaaaagtttgggaccttaaaggatacaaccttgttttcactccagttcttcaaattcaaatggctttggtcaagcttggggttccacatataacttgagcacttgaagtccacataagaggattttgaaa
gi|6 : C------T--CACTTCGTCAA--T-GTA---TACCG--TG-TTCAGGGTGACTG---TCTC--TTCAA--CATTTGGGT----TG--GCTTTCATGA--T--CTTA---GTTTTA-TTGGTGTTG---ATTTTTTAACCAA-TGT---GTTTGACTT-TGTTATTCAT-GTCT--AC-TATTTTGTCT
gi|7 : CAGAATCCGCCGAAGACATCG-TGTCTGCA-AGACATCTAGTTG--GTTTATGAT-cggatgtttcgttggcgatgagataataaggtaatataatccgcaaattccagatcttctagcctttttgtcatcatccaggtgatgccccttctccttttctttattcttctgttcattctcatgatccagtcaatgcagaaggcgaaaacaagtggactaaggagggagtcttgttacactctagtcttcaattcaaatgctttggtcaagcttagtccacatataacttgagtactgaagtccattctgatgattgcgat
gi|8 : acttacttgtaaatacttactcctcatcgtgctggttgcacataagaccgtcaccagagacttccaatgatgcctgtcttgagatcaatgctgtatttgtccccatgtccagcctctgtccttcatctccttctcggtggatcttttccacgtctcttttggtctgcctctcttcctcttgtcaggtcgtgtccatcgcatagcaaccaatggaatcagggtgcaacctgcaaacatgtcctatctatttcttcttttgtattgcctgagatagaggcacggtgttggttctctggtagagttctttttggccgaaatattctCAGAATCCGCCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-A---GT----------TGTTGTACT-CCATG-AC----TCT--ACCCCATG-CA-ATAATAC-TCCAAGGA-CAT---TGCTTTTGAAGATTTTTAATTT----------G-GTGCTG----GTTCTGATCTTGG---CG-GATT---TCCATAT-G-TT-CT-T----CA---AAAC-CCCCTCTTGCTTTTTTTGT-ATTCTGACTT--GTACATCT-TTTCCAGAGT-TGTCATCAGCGGTGATCTTT-CTTCCGAGGTACACACAATCAC------TGACACTTCCTCAA--T-GTC---TACAG--TG-TTC
gi|9 : tttcttttgtattgcctgatatagaggcacggtgttgtttctctggtatgttcctttgtttgagattttttgtggccaggatatgcaCAGAATCCACCGAAGACATCG-TGTCTGGA-AGACATCTAGTTG--GTTTATGAT-G---GTA------TT-TGTGGTATT-CCGTG-AC----TCT--GCCCCATT-AA-ATAATAC-TCCATGGA-CAT---TGCTTTGGAGGATCTTTAATTT----------G-GTGCT-A---GTTCT-----T---------ATT---TCCATAT-G----------------CAAATGCCCCTCTTGC--GTTTTGT-ATTCTGGCTT--GTACATCT-TTTCCAAAGT-TGCCATCAATGGTGATCTTG-CTTCCGAGGTACACAAATTCACTCATGAT--CACTTTCTCAA--A-GTC---TATTG--TG-TTCAGGATGACTG---TCGC--TTCAG--CCTTTGGGT----TG--ACTTTCATGA--T--CTTA---G-TTTAATTGATGTTG---GTCTTTAAACCAA-TTT---GTTTGGCTG-CGTT
13 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TTGCCTCTTGTTGATCTTAGTTTCTGGTGTATTGATTTTTCAGCATTTATTTTCCCTTGCTGTTTTACCCCAAAACTGTTAGGTTTTTTCTTACATGTCACAGTGTCGGTGAGATAGCAGTGTATATATCATCTGCCAAAATCGAGATTCTTCAAGCATTTCTCCTAAAGTCCAGCAATTTCCGTCCGCTTGCTTTTTGTTGTTTCCTCGCATGCGACCCTAGTCATTGCAGAATTTGTGAAGAAGAACAAGGGAGAGTAGATATTCCCTGTTTTACTCCGGTATTCAATTTGAACTTAGTCTGAGATGTTTGATCCACAGATCCCACTCTCGATGTTGAGGTCAATGTATAGCCATCTTATATGAGTGAGTGAGTTTATGTGGGATCCATAATGTCTACGAATTCTTCTAATGCAAGGTGGTTACACTGT
Unaligned ( gi|10 ): TAATCCTCTTCGTACTGATTCTATATAAGGCCATTACCAGAGACTTCCATGCTGGTCTGGCTTGTGTCCATCTTTGAACCTGTCCCAATGACCAGTTGATCTCCTTCATTTCTTTCTTAAGTTTACGATCTCCTCCAGATTCTCTTTTGTTCTTGCTCTCTTTCTCTTGCCAAGTTGCCAGGTAGTGTCCATCTCAAGTCCATCCTTGGAATGGAGGTTGGGTACCTTTTACTTTTAAAAGTGCACTATCCACAACCACTTTCTTTGAGAGAGGGGTGGTGTTAGTCCTACGGTACAGCTCTTCATTTGATTTAGCCAGACAATGCGAAGTAATCTGCGCGAAGATAGCGGGTCTG
Unaligned ( gi|11 ): CATGTCGGTGAGATAGCAGTGCTATATTATCTGCGAAATCGCGATATGCAGGCATTTCTGCCAAAGTTTAGCTGCTAATCATGTCTGCTTGTTTTGGTGGTTTCTCGTATGACCCAATCAATGCAGAATGTGAAGAGAAGGGCGGGAGAGTATACAACCCTGTTTTACTCCGGTATTCAATTTGAACTCGTCTGAAAGGTTTGATCTACATATTGCTCTGGCATTTAAGCTGGTGTATTGCATCTTAATGATGAATATGACTCTATCTGGGATCCTATAATGTCTGAGAATCCTTTCTAAGGCAAGGGTTAACAGTG
Unaligned ( gi|14 ): TACTTACTTAGTCCTCTTCGTGCTGGGTTACACACAAGGCCGTCGCCAGAGACTTCCAATAATGCCTGTCTTGGGACCGATGCTGTACTTGTCCCCATGTCCATTCTCTGTCTTTCATCTCATTCTCGGTGGATCTTCTCCAAGTCTCTTTTGATCTGCCTCTCTTCCTCTTGCCAGATGGTGTCCATCGCATAGCAACCCTAGGGATGGGACCAGGGTGCATCCTGCAAACATGTCCTACCCA
Unaligned ( gi|15 ): GTCTCTGTGACTATGAGATAGTAAGTAATATTCATCCGCAAAATCCAGATCTTCTAGCATTTCTCTGTCATCGTCCAGGTGAGGTGCCCTTTTCTTGTTCTTTACGCTTTTTGTTCATCATCCAGTCAATGCAGAGGACATGTGTTCACTCCAGTCTTCAATCAAATGCTTCGGTCAAGCTTGTTTGTCCACATATAACTTGAGCAATGAAGTCCATATAGAGTTATTTTGATGGTGGC
Unaligned ( gi|17 ): TTGGTCCTCTTCGCTCCGACCGGAGCACAGAGCCTGCACAATAGACCTCCATCGTCTTCTGTCTTGGGGTACTCTCCTCGCTTCACTCCAGGTTGTGTTACTGTCCTTGATCTGCTTGGAGAGTTCTTCGCTAAGTGTTGGCAGATCTTCCTCTCTTTCTTTTC
Unaligned ( gi|20 ): ATCGCATATCAACCCTTGGGTTGGAAACAGGGTGCATCCTGCAAATATTTCTTATCCATTTCCATTTCTTTTGTATTGCCTGATATAGAGGCACGATGTTGTTTCTCTGGTATGTTCCTTCGTTTGAGATTTTC
Unaligned ( gi|21 ): AATTACGTAATCCTCTTTGTTCTGATCAGCACATAAAGCCATCACCAGCGACTTCCATGCTGGTCTGTCTTGTGTCAATCTTTGGACCTGTCCATACGTCCAGTTGATACCTTTCATTTC
Unaligned ( gi|22 ): TACTTTACTTACTCAATCTTTCACCTACGTTGCTGGGTATAAAATATGCACATAAAAGGCCGTCACCAGAGGACCCTCCAATGATAAAATATGTCGTGGGAACCAATGCAGTATTTGTC
Unaligned ( gi|24 ): TTAGTCCTCTTCGTTTCGTTCGGAACATGCTCTGTCTTGGGCTGCTCTCTTGGCTTCACCCAAGGTGATGCTGTTTTTCTGGACCTCTGCCTG
Unaligned ( gi|26 ): TGTCACCAGAGTCTTCCAACAATGCCTGTCTTGGGACCAATGCTGTACTTATCC
Unaligned ( gi|27 ): TTACTTACTTATTCCTCTTCGTGATGGGGTGCACATAAGACCATCACCAG
Unaligned ( gi|28 ): GTCTGTTAGTATAGCATTTATCTGGGTCAAACTTCCAAACA