lowQualScore : 1111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11 11 22 1 11 11 11111111 111 111 111 11 11111 111111111 6666666666666666666666 11 1111 111111111111111111111111111111111111 11111 111 11 111111 11
lowQualScore : 11 6 00 6 3 88 6 9 5 9 3 5 5 3 5 77 5 5 5 5 66 88 5 33 99 888 22222222 4 4 4 111 222 7 0 3 000 3 1 777 55 4 4 4 00000 8888 4 66 777777777 1 3 9999999999999999999999 0 00 9999 8888 99 999 0000 1 66 2 66 8 4 0 4 666 55 4 4 4 000000000000000000000000000000000000 22222 5 5 5 5 5 5 66 333 66 4 4 8 5 0 5 99 888 0 0 5 5 7 444444 5 1 66 00
lowQualScore : .. . .. . . .. . . . . . . . . . .. . . . . .. .. . .. .. ... ........ . . . ... ... . . . ... . . ... .. . . . ..... .... . .. ......... . . ...................... . .. .... .... .. ... .... . .. . .. . . . . ... .. . . . .................................... ..... . . . . . . .. ... .. . . . . . . .. ... . . . . . ...... . . .. ..
lowQualScore : 00 7 22 7 5 22 7 2 0 4 1 0 0 4 0 99 7 7 7 7 66 33 7 66 00 888 55555555 0 0 0 888 777 3 1 6 000 6 3 000 99 0 0 0 00000 5555 0 11 888888888 9 1 2222222222222222222222 1 99 4444 9999 00 111 1111 8 11 7 11 3 4 7 0 222 55 0 0 0 000000000000000000000000000000000000 55555 0 0 0 0 0 0 99 888 99 4 4 9 0 5 0 22 888 2 4 0 0 1 444444 7 7 44 00
consensus : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACAT-AACTTACA-CACTTCACTGTTA-GAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACGAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CA-CAAACGAAANAA---GTTCA----C---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAGAA---AAT----GTAATG-AAAGTAAAATGTTNTACTC----ACCTC---AGAAGTCGT-GTCTG-TACTTTTAAA--ACT--TTA-AAGAATTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTCGA-CGA-AG--NG------------AAACC--AA-CT-----CAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGAG-GT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACA-CGTAACAC-TGTN-AATGTGACA
Reference ( gi|3 ) : AGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAT-TGCA-TTGACAA-AACTTACA-CACGTCACTGTTA-GAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTGTA-CA-GAAACGAAAGCA---GTTCA----C---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAGAAGAAAATGAAAGTAATG-AAGGTAAAATGTTGCACTC----ACCTC---AGAGATCGT-GTCTG-TACTTTTAAA--ACT--TAA-AAGAATTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT----AGA-AG--TG------------A---------CT-----CAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGAT-GT---CCTAT-ACA-GGATAGCTGAAACA------TACTATATACAAACA-TGTAACAC-TGTC-AATGTGACA
gi|2 : GTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCAATTGACAT-AACTTGCA-CACTTCACTGTTA-GAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTTCTCAATCAATACACTATA-CA-GAAACGAAACAA---GTTCAATTACATGTATA-TA-CAAACGAA-ATAA-TT-CTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAA----G-ACCGT--AAAA---------TTGAGAAAAGAA----AT--------TGTAAAGTAAAATGTTGTACTC----ACCTC---AGAGGTCGT-GTCTG-TACTTTTAAA--ACT--TTA-AAGAATTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT----CGA-AG--AG------------A---------CT-----CAGG-T-G-AA-T-AAA-TAC--AG---GT--ATC-AAGGG-TACCTTGAA-G-GGTGTTC-GACTAGAAGAG-GT---CCTAT-ACA-GGATACCTGAAACATACATGTACTATATACAAACA-TGTAACAC-TGTC-AATGTGA
gi|1 : tatatacatatgTATTTTTATTTAACACCATTTTAGTTTACTCGAGAACTTAACCTGCA-TTGACAT-AACTTTCA-CAC-TTACTGT---AAATCATTTATGA-TCATATTCA-CA-TTATTATTACTGATAAAATGACAAGAGCCAA-CGA--TACATCTCTG-CTCATATTTCCTCAATCAATACACTA-A-CACGAACCGAAAACAAGTATGCA----C---TATA-TACCAAACGAACATAA-TTCGTCAAA---CAA-GTTTCA---CAAAATACTAGAGTCAA-CAG-TT-ATCC-----TAG----ATAACG---AAAAGGTTCTTTTCTGCGGA---AAGAAATTG---GTA----AAG--AAAAGATTGTA-TC----A-CTC----GAAGTCGTAGTCTG--ACTTTTAAAATATT--TAA-AAGAA-TATGAA-GCTCGTGGTA-GAT--T-GAAGAAACACCGGTT----CG--AG--AG------------G---------CT-----CAGGATGG-AA-TGGAA-TAC--AGA--GTCGATCGA--GG-TACCTTGAA-GAGGTGTAC-GACTAG-AGAA-GTTTCCTTATAACAGGGATAACTGAAATA------TACTATATACAAACACTGT-ACACATGTCAAATGT
gi|11 : acaataTATTTTTATT--ACACCATTTTAATTTACTCGAGA-CTTAAC-TGCA-TTGACATTAGCTTACA-CACTTCACTGTTAAGAATCATTTATGAATGATATTCA-CATTTATGAT-ACTAA--GTA--ACAAGAGCCAAACGAA-TACA-CTCTGCCTCATATTTCCT-AATCAATACACTATATCA-CAAAC-AAAACA---ATTCA----C---TATATTA-CA
gi|13 : taatatTTTTTATT--GCAC-ATTTTAGTTTATT-GAGA-CTTAAC--GCA-TTG-C-----TTTATAACACTTCACTGTTA-TAATCATTTATCAATTATATTCACCG-TTAT-AT-ACT
gi|10 : attggTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACAT-AACTTACA-CACTTCACTGTTA-GAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-ATCTA-CTCATAAGTCCCCAATTAATACATTATA-CA-CAAACGAAATAA---GTTCA----C---TATA-T--------AA-ATCA-TTTATCAAA---CAA-ATTT-A---C-AAATACT-
gi|4 : TCGAGA-TCTTAT-TGCA-TTGTCAGTAATTTATA-C-------CGTTA-GAATCGTT-ATGAAATATATTCA-CA-TTGTGAT-ACTAT--AAAT-ACAACAGCCAAACGAAATACA-CTCTA-TTCATATTTCCTCAATTGATACACTATA-CC-CAAACGAAAAAA---GTTCA----A---TGTA-TA-CAAACGAA-ATGA-GTTATCAAG---CAA-AATT-A---C-AAACACT-GAGTT---CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTAAGAAAAGA----AAT--------TG-AA----AAAT-----ACTC----AC--------AAATAG---------------AAA--A----TAAGAAAAATTATGAG-ACCCGTGCTG-G-T--T-GTTA-AACA-CGGTT----CGA-AG--AGGGAAAAAAACAAA---------CT-----CAGG-T-G-AA-T-AAG-CAC--AG---GT--ATCGGGTAG-TACCTTGAA-G-GATGTTA-GACTAA-AAAG-GT---CCTTT-ATA-AGATAATTCAAACA------TACTATATACAAACA-TGTAAAAC-TGTG-AATGTGGCA
gi|5 : -GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGCCAAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CA-CATGCGAAACAA---GTTCG----C---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA---G--TCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------TTGAGAAAAGAA----ATC---GTAA-----AGTAGAATGTTTTACTC----ACCTA---AGAAGTCGT-GTCTG-TA-TTTTAAA--ACT--TTA-ACGAATTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-CGGTTCAA-AGAGAG--TG------------AAACCCTAAACT-----CGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAACA------TACTATGTACAAAAA-CATAACAA-TGTA-AAGGTGACg
gi|6 : -GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGC-AAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CA-CATGCGAAACAA---GTTCG----C---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA---G--TCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------T-GAGAAAAGAA----ATC---GTAA-----AGTAGAATGTTTTACTC----ACCTA---AGAAGTCGT-GTCTG-TATTTT--AA--ACT--TTA-ACGAATTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-GGGTTCAA-AGAGAG--TG------------AAACCCTAAACT-----CGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAA-A------TACTATGTACAAAAA-CATAACAA-TGTA-AAGGTGAC
gi|15 : A---GTTCA----C---TATA-TA-CA---GAA-ATTA-TTTCTCAAA---CAA-AA-----------ATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-A
gi|12 : acaTA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AGTAC-AAA-----GAGTAAG-CAG-TT-ATCC-----TAGCTAGG-ACCAT--AAAA---------TTAAAA
gi|8 : TA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AG--C-AAA-----GAGT-AA-CAGGTT-ATCCGTAGCTAG----G-ACCATTTAAAA---------TT-----------AAAATG----TGTT------TA---TCTCGTGATC----ACCTCGTTAGA-AT-GTCGGCTGGTACTTTTAAA--ATTGGTAA-AGAAGTTTTGAA-GC-CATGTTA-G-TGTT-GTC--AGCA-CGGTCCGC-AAG-AG--TG------------AAACC-----CTAAAATCAGG-T-G-A--T-AA--TACTTAGTCAGT---TCGAGGGG-TACTTTACA-GCGGTGTACAGACTAG-AGAG-GT---CTT-T-ACA-GATTAACTCAACCA------CAtgttttactcgatcacctcagaagtcgtgattgtacttttaaaactttaaagaattttgaagctcatgttagttgtacagcacggtc
gi|7 : AAACGAA-ATAA-TTTTTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAAACAG-TTTATCC-----TAG----G-AACGT--AAAA---------T-GAGAAAAGAA----AT--------TGTAAAGTAAAATGTTGTACTC----ACCTC---AGAAGTCGT------------TTGAA--ATT--TTA-AAGAATTATGAAAGCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT----CGA-AG--AG------------A---------CT-----CAGG-T-G-AAGT-AAAATAC--AG---GT--ATCGAGGGG-TACCTTGAAAG-GGTGTAC-GACTCG-AGAG-GT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACA-TGTAACAC-TGTC-AATGTGACA
gi|9 : ---CAA-AATT-A---A-AAATACT-ATGTCAA-AAG-TT-ATCC-----TAG----G-ACCAC--AAGA---------TTGAAAACATAA----ATT---GTAATG-----TAAAATGTTTTACTC----CTCTG---AGAAATCGT-GTCTG-AATTTTGAAA--ATG--TTA-ACGAATTATCAA-ACTCGTGACA-A-T--T-GTAG-AGCA-CGGT
gi|12 : tcATA-AAATTAAAATGTTTTACTCGATCACCTC---AGAAGTCGT-GATTG-TACTTTTAAA--ACT--TTA-AAGAATTTTGAA-GCTCATGTTA-G-T--T-GTAC-AGCA-CGGTaccttgaaggctgtacgactagaaaggtcctatgcaggataactgaaacacgctatatgcaagcatgttacagtgtaaatgtaac
gi|14 : tatagaaacgaaataaagttctcagaaggcaagaattagtacaaagagtaagcagttatcctagctaggaccTATGAA---CCGTGCTATA-T--TCGAAG-AACA-CGGTTCGACAGA-AGAGTG------------AAACTAAAA-CT-----CAGG-T-GCAA-T-AAA-TAC--AG---GT--ATCGAGGGGTTACCTTGAA-G-GGc
gi|9 : GG-TACCTTGAA-G-GCTGTAC-GACTAG-AAAG-GT---CCTAT-GCA-GGATAACTGAAACA------CGCTATATGCAAGCA-TGTTACAG-TGTA-AATGTAAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AAGTGTAAGACTTTATGCTCTACAATAAGGCTATTGTGATGGTATGTTCAAGGGA
Unaligned ( gi|17 ): ATAACTTTCTGAAAATGTTTCCAGATTTTAAATACTGGGT
Alignments
lowQualScore : 1 11 111 111111111 66666666666666666 66666666666666666666666666 111 111111
lowQualScore : 99 5 5 5 1 0 0 5 7 4 4 1 4 66 5 2 5 5 5 0 5 66 1 4 4 9999 777 3 3 3 33 111 6 3 999 3 0 0 3 3 3 3 99999 7777 3 55 666666666 22 777 77777777777777777 1 8888 777 4 44 3 3 0 55 4 55 4 3 444 55 3 3 3 1 44444444444444444444444444 4 4 4 4 4 4 66 222 66 4 4 8 4 4 8 777 4 4 222222 5 0 5 66
lowQualScore : .. . . . . . . . . . . . . .. . . . . . . . .. . . . .... ... . . . .. ... . . ... . . . . . . . ..... .... . .. ......... .. ... ................. . .... ... . .. . . . .. . .. . . ... .. . . . . .......................... . . . . . . .. ... .. . . . . . . ... . . ...... . . . ..
lowQualScore : 22 7 7 7 4 1 7 7 3 4 4 9 4 99 0 0 0 0 0 9 0 99 0 4 4 4444 888 6 6 6 66 777 7 3 222 3 4 4 3 6 6 6 11111 7777 6 55 000000000 44 000 99999999999999999 0 5555 000 0 88 3 2 7 44 0 55 0 6 777 00 6 6 6 1 00000000000000000000000000 4 4 4 4 4 4 11 222 11 0 0 0 4 4 9 888 4 4 888888 0 4 0 00
consensus : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAA---AAGAAATT----GTAAT-AAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTCGA--GA-AG---NG--AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
Reference ( family-3450 ) : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACGAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAANAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAA---AAGAAAAT----GTAATGAAAGTAAAATGTTNTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTCGAC-GA-AG---NG--AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
gi|1 : TATTTTTATTTAACACCATTTTAGTTTACTCGAGAACTTAACCTGCA-TTGACA-TAACTTTCACACTT-ACTGT---AAATCATTTATGA-TCATATTCA-CA-TTATTATTACTGATAAAATGACAAGAGCCAA-CGA--TACATCTCTG-CTCATATTTCCTCAATCAATACACTA-A-CACGAACCGAAAACAAGTATGC----AC---TATA-TACCAAACGAACATAA-TTCGTCAAA---CAA-GTTTCA---CAAAATACTAGAGTCAA-CAG-TT-ATCC-----TAG----ATAACG---AAAAGGTTCTTTTCTGCGGA---AAGAAATT----G--GT-AAAG-AAAAGATTGTA-TC----A-CTC----GAA-GTCGTAGTCTG-ACTTTTAAAATATT-TA--AAAGA-ATATGAA-GCTCGTGGTA-GAT--T-GAAGAAACACCGGTTCGA--GA-GG-------------------CTCAGGATGG-AA-TGGAA-TAC--AGA--GTCGATCGA--GG-TACCTTGAA-GAGGTGTAC-GACTAG-AGA-AGTTTCCTTATAACAGGGATAACTGAAATA------TACTATATACAAACACTGT-ACACATGTCAAATGT
gi|10 : acaataTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-ATCTA-CTCATAAGTCCCCAATTAATACATTATA-CACAAAC--GAAATAAGT-T-C----AC---TATA-T--------AA-ATCA-TTTATCAAA---CAA-ATTT-A---C-AAATACT-
gi|11 : TATTTTTATT--ACACCATTTTAATTTACTCGAGA-CTTAAC-TGCA-TTGACATTAGCTTACACACTTCACTGTTAAGAATCATTTATGAATGATATTCA-CATTTATGAT-ACTAA--GTA--ACAAGAGCCAAACGAA-TACA-CTCTGCCTCATATTTCCT-AATCAATACACTATATCACAAAC--AAAACAA-T-T-C----AC---TATATTA-CA
gi|12 : taatatTA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AGTAC-AAA-----GAGTAAG-CAG-TT-ATCC-----TAGCTAGG-ACCAT--AAAA---------TT-------------------------------AAAATGTTTTACTCGATCACCTC---AGAA-GTCGT-GATTGTACTTTTAAAAC-TT-TA--AAGAA-TTTTGAA-GCTCATGTTA-G-T--T-GTAC-AGCA-CGGT
gi|13 : TTTTTATT--GCAC-ATTTTAGTTTATT-GAGA-CTTAAC--GCA-TTGCTT-TA---TA-ACACTTCACTGTT-ATAATCATTTATCAATTATATTCACCG-TTAT-AT-ACTc
gi|14 : attggTATGAA---CCGTGCTATA-T--TCGAAG-AACA-CGGTTCGACAGA-AG---AGTGAAACT---AAAACTCAGG-T-GCAA-T-AAA-TAC--AG---GT--ATCGAGGGGTTACCTTGAA-G-GG
gi|15 : ACAAGT-T-C----AC---TATA-TA-CA---GAA-ATTA-TTTCTCAAA---CAA-AA-----------ATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-A
gi|2 : GTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCAATTGACA-TAACTTGCACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTTCTCAATCAATACACTATA-CAGAAAC--GAAACAAGT-T-CAATTACATGTATA-TA-CAAACGAA-ATAA--TTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAA----G-ACCGT--AAAA---------TTGAGAA---AAGAAATT----GT----AAAGTAAAATGTTGTACTC----ACCTC---AGAG-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT---C-GA-AG---AG-----------A--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATC-AAGGG-TACCTTGAA-G-GGTGTTC-GACTAGAAGA-GGT---CCTAT-ACA-GGATACCTGAAACATACATGTACTATATACAAACAT-GTAACAC-TGT-CAATGTGA
gi|3 : tatatacatatgGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAT-TGCA-TTGACA-AAACTTACACACGTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTGTA-CAGAAAC--GAAAGCAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAGAAGAAAATGAAAGTAATGAAGGTAAAATGTTGCACTC----ACCTC---AGAG-ATCGT-GTCTGTACTTTTAAAAC-TT-AA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT--A--GA-AG---TG-----------A--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-TGT---CCTAT-ACA-GGATAGCTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|4 : aTCGAGA-TCTTAT-TGCA-TTGTCAGTAATTTATAC-------CGTT-AGAATCGTT-ATGAAATATATTCA-CA-TTGTGAT-ACTAT--AAAT-ACAACAGCCAAACGAAATACA-CTCTA-TTCATATTTCCTCAATTGATACACTATA-CCCAAAC--GAAAAAAGT-T-C----AA---TGTA-TA-CAAACGAA-ATGA-GTTATCAAG---CAA-AATT-A---C-AAACACT-GAGTT---CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTAAGAA---AAGAAATT----G----------AAAA----ATACTC----AC--------AA-ATAG--------------AAAA-----TAAGAAAAA-TTATGAG-ACCCGTGCTG-G-T--T-GTTA-AACA-CGGTTCGAA-GA-GGGAAAA--AAACA---AA--CTCAGG-T-G-AA-T-AAG-CAC--AG---GT--ATCGGGTAG-TACCTTGAA-G-GATGTTA-GACTAA-AAA-GGT---CCTTT-ATA-AGATAATTCAAACA------TACTATATACAAACAT-GTAAAAC-TGT-GAATGTGGCA
gi|5 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGCCAAACAAA-TACA-CTCTA-CTC--ATTCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-C----GC---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAAT-----AGTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------TTGAGAA---AAGAAATC----GT----AAAGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTA-TTTTAAAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-CGGTTCAAA-GAGAG---TG--AAACCCTAAA--CTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAACA------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGACg
gi|6 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGC-AAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-C----GC---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA-----GTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------T-GAGAA---AAGAAATC----GTAA----AGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTATTTT--AAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-GGGTTCAAA-GAGAG---TG--AAACCCTAAA--CTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAA-A------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGAC
gi|7 : AAACGAA-ATAA-TTTTTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAAACAG-TTTATCC-----TAG----G-AACGT--AAAA---------T-GAGAA---AAGAAATT----GTAA----AGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-----------TTGAAAT-TT-TA--AAGAA-TTATGAAAGCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTCGA-----AG---AG--A-----------CTCAGG-T-G-AAGT-AAAATAC--AG---GT--ATCGAGGGG-TACCTTGAAAG-GGTGTAC-GACTCG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|8 : TA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AG--C-AAA-----GAGT-AA-CAGGTT-ATCCGTAGCTAG----G-ACCATTTAAAA---------TT-----------AAAAT----GTGTT-----TA---TCTCGTGATC----ACCTCGTTAGAATGTCG--GCTGGTACTTTTAAAAT-TGGTA--AAGAAGTTTTGAA-GC-CATGTTA-G-TGTT-GTC--AGCA-CGGTCCG-C-AAGAG---TG--AAACCCTAAA--ATCAGG-T-G-A--T-AA--TACTTAGTCAGT---TCGAGGGG-TACTTTACA-GCGGTGTACAGACTAG-AGA-GGT---CTT-T-ACA-GATTAACTCAACCA------CA
gi|9 : ---CAA-AATT-A---A-AAATACT-ATGTCAA-AAG-TT-ATCC-----TAG----G-ACCAC--AAGA---------TTGAAAA---CATAAATT----GTAATG----TAAAATGTTTTACTC----CTCTG---AGAA-ATCGT-GTCTGAATTTTGAAAAT-GT-TA--ACGAA-TTATCAA-ACTCGTGACA-A-T--T-GTAG-AGCA-CGGT
gi|9 : tcGG-TACCTTGAA-G-GCTGTAC-GACTAG-AAA-GGT---CCTAT-GCA-GGATAACTGAAACA------CGCTATATGCAAGCAT-GTTACAG-TGT-AAATGTAACaccttgaaggctgtacgactagaaaggtcctatgcaggataactgaaacacgctatatgcaagcatgttacagtgtaaatgtaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAGTGTAAGACTTTATGCTCTACAATAAGGCTATTGTGATGGTATGTTCAAGGGA
Unaligned ( gi|17 ): ATAACTTTCTGAAAATGTTTCCAGATTTTAAATACTGGGT
Alignments
lowQualScore : 1 11 111 111111111 44444444 66666666666666666666666666666 111 111111
lowQualScore : 99 5 5 5 1 0 0 5 7 4 4 1 4 66 5 5 5 5 0 5 66 4 4 9999 777 3 3 3 33 111 6 3 999 3 0 0 3 3 3 3 99999 7777 3 55 666666666 22 8888 777 99999999 0 1 8888 777 4 44 3 3 0 55 4 55 4 3 444 55 3 3 3 11111111111111111111111111111 4 4 4 4 4 4 66 222 66 4 4 8 4 4 8 777 4 4 222222 5 0 5 66
lowQualScore : .. . . . . . . . . . . . . .. . . . . . . .. . . .... ... . . . .. ... . . ... . . . . . . . ..... .... . .. ......... .. .... ... ........ . . .... ... . .. . . . .. . .. . . ... .. . . . ............................. . . . . . . .. ... .. . . . . . . ... . . ...... . . . ..
lowQualScore : 22 7 7 7 4 1 7 7 3 4 4 9 4 99 0 0 0 0 9 0 99 4 4 4444 888 6 6 6 66 777 7 3 222 3 4 4 3 6 6 6 11111 7777 6 55 000000000 44 5555 000 77777777 7 6 5555 000 0 88 3 2 7 44 0 55 0 6 777 00 6 6 6 22222222222222222222222222222 4 4 4 4 4 4 11 222 11 0 0 0 4 4 9 888 4 4 888888 0 4 0 00
consensus : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---GTAAT-AAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A--GA-AGNG----AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
Reference ( family-3450 ) : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---GTAAT-AAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A--GA-AGNG----AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
gi|1 : TATTTTTATTTAACACCATTTTAGTTTACTCGAGAACTTAACCTGCA-TTGACA-TAACTTTCACACTT-ACTGT---AAATCATTTATGA-TCATATTCA-CA-TTATTATTACTGATAAAATGACAAGAGCCAA-CGA--TACATCTCTG-CTCATATTTCCTCAATCAATACACTA-A-CACGAACCGAAAACAAGTATGC----AC---TATA-TACCAAACGAACATAA-TTCGTCAAA---CAA-GTTTCA---CAAAATACTAGAGTCAA-CAG-TT-ATCC-----TAG----ATAACG---AAAAGGTTCTTTTCTGCGGAAAG----AAATT---G--GT-AAAG-AAAAGATTGTA-TC----A-CTC----GAA-GTCGTAGTCTG-ACTTTTAAAATATT-TA--AAAGA-ATATGAA-GCTCGTGGTA-GAT--T-GAAGAAACACCGGTTC-G-A--GA-GG------------------CTCAGGATGG-AA-TGGAA-TAC--AGA--GTCGATCGA--GG-TACCTTGAA-GAGGTGTAC-GACTAG-AGA-AGTTTCCTTATAACAGGGATAACTGAAATA------TACTATATACAAACACTGT-ACACATGTCAAATGT
gi|10 : acaataTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-ATCTA-CTCATAAGTCCCCAATTAATACATTATA-CACAAAC--GAAATAAGT-T-C----AC---TATA-T--------AA-ATCA-TTTATCAAA---CAA-ATTT-A---C-AAATACT-
gi|11 : TATTTTTATT--ACACCATTTTAATTTACTCGAGA-CTTAAC-TGCA-TTGACATTAGCTTACACACTTCACTGTTAAGAATCATTTATGAATGATATTCA-CATTTATGAT-ACTAA--GTA--ACAAGAGCCAAACGAA-TACA-CTCTGCCTCATATTTCCT-AATCAATACACTATATCACAAAC--AAAACAA-T-T-C----AC---TATATTA-CA
gi|12 : taatatTA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AGTAC-AAA-----GAGTAAG-CAG-TT-ATCC-----TAGCTAGG-ACCAT--AAAA---------TT-------------------------------AAAATGTTTTACTCGATCACCTC---AGAA-GTCGT-GATTGTACTTTTAAAAC-TT-TA--AAGAA-TTTTGAA-GCTCATGTTA-G-T--T-GTAC-AGCA-CGGT
gi|13 : TTTTTATT--GCAC-ATTTTAGTTTATT-GAGA-CTTAAC--GCA-TTGCTT-TA---TA-ACACTTCACTGTT-ATAATCATTTATCAATTATATTCACCG-TTAT-AT-ACTc
gi|14 : attggTATGAA---CCGTGCTATA-T--TCGAAG-AACA-CGGTTC-G-ACAGA-AGAGTG--AAACT---AAAACTCAGG-T-GCAA-T-AAA-TAC--AG---GT--ATCGAGGGGTTACCTTGAA-G-GG
gi|15 : ACAAGT-T-C----AC---TATA-TA-CA---GAA-ATTA-TTTCTCAAA---CAA-AA-----------ATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-A
gi|2 : GTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCAATTGACA-TAACTTGCACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTTCTCAATCAATACACTATA-CAGAAAC--GAAACAAGT-T-CAATTACATGTATA-TA-CAAACGAA-ATAA--TTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAA----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---G---T-AAAGTAAAATGTTGTACTC----ACCTC---AGAG-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC------GA-AGAG-------------A--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATC-AAGGG-TACCTTGAA-G-GGTGTTC-GACTAGAAGA-GGT---CCTAT-ACA-GGATACCTGAAACATACATGTACTATATACAAACAT-GTAACAC-TGT-CAATGTGA
gi|3 : tatatacatatgGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAT-TGCA-TTGACA-AAACTTACACACGTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTGTA-CAGAAAC--GAAAGCAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAGAAGAAAATGAAAGTAATGAAGGTAAAATGTTGCACTC----ACCTC---AGAG-ATCGT-GTCTGTACTTTTAAAAC-TT-AA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT----A--GA-AGTG-------------A--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-TGT---CCTAT-ACA-GGATAGCTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|4 : aTCGAGA-TCTTAT-TGCA-TTGTCAGTAATTTATAC-------CGTT-AGAATCGTT-ATGAAATATATTCA-CA-TTGTGAT-ACTAT--AAAT-ACAACAGCCAAACGAAATACA-CTCTA-TTCATATTTCCTCAATTGATACACTATA-CCCAAAC--GAAAAAAGT-T-C----AA---TGTA-TA-CAAACGAA-ATGA-GTTATCAAG---CAA-AATT-A---C-AAACACT-GAGTT---CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTAAGAAAAG----AAATT---G----------AAAA----ATACTC----AC--------AA-ATAG--------------AAAA-----TAAGAAAAA-TTATGAG-ACCCGTGCTG-G-T--T-GTTA-AACA-CGGTTC-G-A--AG-AGGGAAAAAAACA---AA--CTCAGG-T-G-AA-T-AAG-CAC--AG---GT--ATCGGGTAG-TACCTTGAA-G-GATGTTA-GACTAA-AAA-GGT---CCTTT-ATA-AGATAATTCAAACA------TACTATATACAAACAT-GTAAAAC-TGT-GAATGTGGCA
gi|5 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGCCAAACAAA-TACA-CTCTA-CTC--ATTCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-C----GC---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAAT-----AGTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------TTGAGAAAAG----AAATC---G---T-AAAGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTA-TTTTAAAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-CGGTTCAA-A--GAGAGTG----AAACCCTAAA--CTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAACA------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGACg
gi|6 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGC-AAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-C----GC---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA-----GTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------T-GAGAAAAG----AAATC---GTAA----AGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTATTTT--AAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-GGGTTC-A-AA-GAGAGTG----AAACCCTAAA--CTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAA-A------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGAC
gi|7 : AAACGAA-ATAA-TTTTTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAAACAG-TTTATCC-----TAG----G-AACGT--AAAA---------T-GAGAAAAG----AAATT---GTAA----AGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-----------TTGAAAT-TT-TA--AAGAA-TTATGAAAGCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A-----AGAG----A-----------CTCAGG-T-G-AAGT-AAAATAC--AG---GT--ATCGAGGGG-TACCTTGAAAG-GGTGTAC-GACTCG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|8 : TA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AG--C-AAA-----GAGT-AA-CAGGTT-ATCCGTAGCTAG----G-ACCATTTAAAA---------TT---AAAA---------T---GTGTT-----TA---TCTCGTGATC----ACCTCGTTAGAATGTCG--GCTGGTACTTTTAAAAT-TGGTA--AAGAAGTTTTGAA-GC-CATGTTA-G-TGTT-GTC--AGCA-CGGTCC-GCA--AG-AGTG----AAACCCTAAA--ATCAGG-T-G-A--T-AA--TACTTAGTCAGT---TCGAGGGG-TACTTTACA-GCGGTGTACAGACTAG-AGA-GGT---CTT-T-ACA-GATTAACTCAACCA------CA
gi|9 : ---CAA-AATT-A---A-AAATACT-ATGTCAA-AAG-TT-ATCC-----TAG----G-ACCAC--AAGA---------TTGAAAACAT----AAATT---GTAAT----GTAAAATGTTTTACTC----CTCTG---AGAA-ATCGT-GTCTGAATTTTGAAAAT-GT-TA--ACGAA-TTATCAA-ACTCGTGACA-A-T--T-GTAG-AGCA-CGGT
gi|9 : tcGG-TACCTTGAA-G-GCTGTAC-GACTAG-AAA-GGT---CCTAT-GCA-GGATAACTGAAACA------CGCTATATGCAAGCAT-GTTACAG-TGT-AAATGTAACaccttgaaggctgtacgactagaaaggtcctatgcaggataactgaaacacgctatatgcaagcatgttacagtgtaaatgtaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAGTGTAAGACTTTATGCTCTACAATAAGGCTATTGTGATGGTATGTTCAAGGGA
Unaligned ( gi|17 ): ATAACTTTCTGAAAATGTTTCCAGATTTTAAATACTGGGT
Alignments
lowQualScore : 1 11 111 111111111 44444444 66666666666666666666666666666 111 111111
lowQualScore : 99 5 5 5 1 0 0 5 7 4 4 1 4 66 5 5 5 5 0 5 66 4 4 9999 777 3 3 3 33 111 6 3 999 3 0 0 3 3 3 3 99999 7777 3 55 666666666 22 8888 777 99999999 0 1 8888 777 4 44 3 3 0 55 4 55 4 3 444 55 3 3 3 11111111111111111111111111111 4 4 4 4 4 4 66 222 66 4 4 8 4 4 8 777 4 4 222222 5 0 5 66
lowQualScore : .. . . . . . . . . . . . . .. . . . . . . .. . . .... ... . . . .. ... . . ... . . . . . . . ..... .... . .. ......... .. .... ... ........ . . .... ... . .. . . . .. . .. . . ... .. . . . ............................. . . . . . . .. ... .. . . . . . . ... . . ...... . . . ..
lowQualScore : 22 7 7 7 4 1 7 7 3 4 4 9 4 99 0 0 0 0 9 0 99 4 4 4444 888 6 6 6 66 777 7 3 222 3 4 4 3 6 6 6 11111 7777 6 55 000000000 44 5555 000 77777777 7 6 5555 000 0 88 3 2 7 44 0 55 0 6 777 00 6 6 6 22222222222222222222222222222 4 4 4 4 4 4 11 222 11 0 0 0 4 4 9 888 4 4 888888 0 4 0 00
consensus : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---GTAAT-AAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A--GA-AGNG----AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
Reference ( family-3450 ) : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---GTAAT-AAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A--GA-AGNG----AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
gi|1 : TATTTTTATTTAACACCATTTTAGTTTACTCGAGAACTTAACCTGCA-TTGACA-TAACTTTCACACTT-ACTGT---AAATCATTTATGA-TCATATTCA-CA-TTATTATTACTGATAAAATGACAAGAGCCAA-CGA--TACATCTCTG-CTCATATTTCCTCAATCAATACACTA-A-CACGAACCGAAAACAAGTATGC----AC---TATA-TACCAAACGAACATAA-TTCGTCAAA---CAA-GTTTCA---CAAAATACTAGAGTCAA-CAG-TT-ATCC-----TAG----ATAACG---AAAAGGTTCTTTTCTGCGGAAAG----AAATT---G--GT-AAAG-AAAAGATTGTA-TC----A-CTC----GAA-GTCGTAGTCTG-ACTTTTAAAATATT-TA--AAAGA-ATATGAA-GCTCGTGGTA-GAT--T-GAAGAAACACCGGTTC-G-A--GA-GG------------------CTCAGGATGG-AA-TGGAA-TAC--AGA--GTCGATCGA--GG-TACCTTGAA-GAGGTGTAC-GACTAG-AGA-AGTTTCCTTATAACAGGGATAACTGAAATA------TACTATATACAAACACTGT-ACACATGTCAAATGT
gi|10 : acaataTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-ATCTA-CTCATAAGTCCCCAATTAATACATTATA-CACAAAC--GAAATAAGT-T-C----AC---TATA-T--------AA-ATCA-TTTATCAAA---CAA-ATTT-A---C-AAATACT-
gi|11 : TATTTTTATT--ACACCATTTTAATTTACTCGAGA-CTTAAC-TGCA-TTGACATTAGCTTACACACTTCACTGTTAAGAATCATTTATGAATGATATTCA-CATTTATGAT-ACTAA--GTA--ACAAGAGCCAAACGAA-TACA-CTCTGCCTCATATTTCCT-AATCAATACACTATATCACAAAC--AAAACAA-T-T-C----AC---TATATTA-CA
gi|12 : taatatTA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AGTAC-AAA-----GAGTAAG-CAG-TT-ATCC-----TAGCTAGG-ACCAT--AAAA---------TT-------------------------------AAAATGTTTTACTCGATCACCTC---AGAA-GTCGT-GATTGTACTTTTAAAAC-TT-TA--AAGAA-TTTTGAA-GCTCATGTTA-G-T--T-GTAC-AGCA-CGGT
gi|13 : TTTTTATT--GCAC-ATTTTAGTTTATT-GAGA-CTTAAC--GCA-TTGCTT-TA---TA-ACACTTCACTGTT-ATAATCATTTATCAATTATATTCACCG-TTAT-AT-ACTc
gi|14 : attggTATGAA---CCGTGCTATA-T--TCGAAG-AACA-CGGTTC-G-ACAGA-AGAGTG--AAACT---AAAACTCAGG-T-GCAA-T-AAA-TAC--AG---GT--ATCGAGGGGTTACCTTGAA-G-GG
gi|15 : ACAAGT-T-C----AC---TATA-TA-CA---GAA-ATTA-TTTCTCAAA---CAA-AA-----------ATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-A
gi|2 : GTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCAATTGACA-TAACTTGCACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTTCTCAATCAATACACTATA-CAGAAAC--GAAACAAGT-T-CAATTACATGTATA-TA-CAAACGAA-ATAA--TTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAA----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---G---T-AAAGTAAAATGTTGTACTC----ACCTC---AGAG-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC------GA-AGAG-------------A--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATC-AAGGG-TACCTTGAA-G-GGTGTTC-GACTAGAAGA-GGT---CCTAT-ACA-GGATACCTGAAACATACATGTACTATATACAAACAT-GTAACAC-TGT-CAATGTGA
gi|3 : tatatacatatgGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAT-TGCA-TTGACA-AAACTTACACACGTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTGTA-CAGAAAC--GAAAGCAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAGAAGAAAATGAAAGTAATGAAGGTAAAATGTTGCACTC----ACCTC---AGAG-ATCGT-GTCTGTACTTTTAAAAC-TT-AA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTT----A--GA-AGTG-------------A--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-TGT---CCTAT-ACA-GGATAGCTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|4 : aTCGAGA-TCTTAT-TGCA-TTGTCAGTAATTTATAC-------CGTT-AGAATCGTT-ATGAAATATATTCA-CA-TTGTGAT-ACTAT--AAAT-ACAACAGCCAAACGAAATACA-CTCTA-TTCATATTTCCTCAATTGATACACTATA-CCCAAAC--GAAAAAAGT-T-C----AA---TGTA-TA-CAAACGAA-ATGA-GTTATCAAG---CAA-AATT-A---C-AAACACT-GAGTT---CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTAAGAAAAG----AAATT---G----------AAAA----ATACTC----AC--------AA-ATAG--------------AAAA-----TAAGAAAAA-TTATGAG-ACCCGTGCTG-G-T--T-GTTA-AACA-CGGTTC-G-A--AG-AGGGAAAAAAACA---AA--CTCAGG-T-G-AA-T-AAG-CAC--AG---GT--ATCGGGTAG-TACCTTGAA-G-GATGTTA-GACTAA-AAA-GGT---CCTTT-ATA-AGATAATTCAAACA------TACTATATACAAACAT-GTAAAAC-TGT-GAATGTGGCA
gi|5 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGCCAAACAAA-TACA-CTCTA-CTC--ATTCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-C----GC---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAAT-----AGTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------TTGAGAAAAG----AAATC---G---T-AAAGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTA-TTTTAAAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-CGGTTCAA-A--GAGAGTG----AAACCCTAAA--CTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAACA------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGACg
gi|6 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGC-AAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-C----GC---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA-----GTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------T-GAGAAAAG----AAATC---GTAA----AGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTATTTT--AAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-GGGTTC-A-AA-GAGAGTG----AAACCCTAAA--CTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAA-A------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGAC
gi|7 : AAACGAA-ATAA-TTTTTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAAACAG-TTTATCC-----TAG----G-AACGT--AAAA---------T-GAGAAAAG----AAATT---GTAA----AGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-----------TTGAAAT-TT-TA--AAGAA-TTATGAAAGCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A-----AGAG----A-----------CTCAGG-T-G-AAGT-AAAATAC--AG---GT--ATCGAGGGG-TACCTTGAAAG-GGTGTAC-GACTCG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|8 : TA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AG--C-AAA-----GAGT-AA-CAGGTT-ATCCGTAGCTAG----G-ACCATTTAAAA---------TT---AAAA---------T---GTGTT-----TA---TCTCGTGATC----ACCTCGTTAGAATGTCG--GCTGGTACTTTTAAAAT-TGGTA--AAGAAGTTTTGAA-GC-CATGTTA-G-TGTT-GTC--AGCA-CGGTCC-GCA--AG-AGTG----AAACCCTAAA--ATCAGG-T-G-A--T-AA--TACTTAGTCAGT---TCGAGGGG-TACTTTACA-GCGGTGTACAGACTAG-AGA-GGT---CTT-T-ACA-GATTAACTCAACCA------CA
gi|9 : ---CAA-AATT-A---A-AAATACT-ATGTCAA-AAG-TT-ATCC-----TAG----G-ACCAC--AAGA---------TTGAAAACAT----AAATT---GTAAT----GTAAAATGTTTTACTC----CTCTG---AGAA-ATCGT-GTCTGAATTTTGAAAAT-GT-TA--ACGAA-TTATCAA-ACTCGTGACA-A-T--T-GTAG-AGCA-CGGT
gi|9 : tcGG-TACCTTGAA-G-GCTGTAC-GACTAG-AAA-GGT---CCTAT-GCA-GGATAACTGAAACA------CGCTATATGCAAGCAT-GTTACAG-TGT-AAATGTAACaccttgaaggctgtacgactagaaaggtcctatgcaggataactgaaacacgctatatgcaagcatgttacagtgtaaatgtaac
blockSeqs : . . . A T A T C T G . . . A . C T . . . AATT ATG T . . AG AGG G . GTA . . A G T GTAGC CTAG . TT . TG AAGA AAA TAATGAAG T GATC GTT T T T C C G AG G A TA GT C . . GACAGAAGAGTGAAACTAAAA . . C G . A TT TCA . T A C A A T . . . TACATG . . C
blockSeqs : . . . . G . T . . G . . . . . . . . . . . . . . . AG AGG G . G . . . . . . . . . . TG . . TAAA G . . . T T C C . . . . G . . . . AAAGAGAGTGAAACCCTAAA . . . . . . . . . . . . . . T . . . . . . C
blockSeqs : . . . . . . T . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . TA . . TAAA G . . . T T C C . . . . G . . . . AAAGAGAGTGAAACCCTAAA . . . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . T . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . TG . . TAAA A . . . T T T C . . . . G . . . . GAAGAGGGAAAAAAACAAA . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . T . . G . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . TG . . TAAA T . . . T T C C . . . . G . . . . GCAAGAGTGAAACCCTAAA . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . T . . TGTT T . . . T T T T . . . . T . . . . AGAAGTGA . . . . . . . . . . . . . . . . . . . . . C
blockSeqs : . . . A . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . G . . TAAT G . . . T A . T . . . . T . . . . GAAGAGA . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . G . . . . . . T . . . . G . . . . GAAGAGA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . . T . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . .
blockSeqCons : ** ** ** ********* TAAA**** T* C* G** GAAGAGAGTGAAACCTAAA********** *** ** *** N*
originalCons : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---GTAAT-AAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGTTC-G-A--GA-AGNG----AAACC---AA--CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
finalCons : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-C----AC---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAATT---GTAAA----GTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTAG--T--T-GTAG-AGCA-CGGTTCGAAGAGAGTGAAACCTAAA----------CTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGTN-AATGTGACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAGTGTAAGACTTTATGCTCTACAATAAGGCTATTGTGATGGTATGTTCAAGGGA
Unaligned ( gi|17 ): ATAACTTTCTGAAAATGTTTCCAGATTTTAAATACTGGGT
Alignments
lowQualScore : 1 11111111 111 111111111 1111111111 44444444444444 111 111111
lowQualScore : 99 5 5 5 1 0 0 5 7 4 4 1 4 66 5 5 5 5 33 0 5 66 4 4 00000000 3 3 3 99 111 6 3 999 3 0 444 3 3 3 99999 7777 3 55 666666666 22 8888 4444444444 4444 0 1 8888 777 4 44 3 3 0 55 4 55 4 3 444 55 3 3 3 666 44 4 66666666666666 4 4 4 4 4 4 66 222 66 4 4 8 4 4 8 777 4 4 222222 5 0 5 66
lowQualScore : .. . . . . . . . . . . . . .. . . . . .. . . .. . . ........ . . . .. ... . . ... . . ... . . . ..... .... . .. ......... .. .... .......... .... . . .... ... . .. . . . .. . .. . . ... .. . . . ... .. . .............. . . . . . . .. ... .. . . . . . . ... . . ...... . . . ..
lowQualScore : 22 7 7 7 4 1 7 7 3 4 4 9 4 99 0 0 0 0 55 9 0 99 4 4 00000000 6 6 6 22 777 7 3 222 3 4 888 6 6 6 11111 7777 6 55 000000000 44 5555 9999999999 4444 7 6 5555 000 0 88 3 2 7 44 0 55 0 6 777 00 6 6 6 444 77 4 99999999999999 4 4 4 4 4 4 11 222 11 0 0 0 4 4 9 888 4 4 888888 0 4 0 00
consensus : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-CA----C---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAAT--------T-GTAAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGT---TCGA-AGA-GAGTGAAA-CC--AAACTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
Reference ( family-3450 ) : NGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTATA-CACAAAC--GAAACAAGT-T-CA----C---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAG----AAAT--------T-GTAAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGT---TCGA-AGA-GAGTGAAA-CC-TAAACTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAC-GTAACAC-TGT-NAATGTGACA
gi|1 : TATTTTTATTTAACACCATTTTAGTTTACTCGAGAACTTAACCTGCA-TTGACA-TAACTTTCACACTT-ACTGT---AAATCATTTATGA-TCATATTCA-CA-TTATTATTACTGATAAAATGACAAGAGCCAA-CGA--TACATCTCTG-CTCATATTTCCTCAATCAATACACTA-A-CACGAACCGAAAACAAGTATGCA----C---TATA-TACCAAACGAACATAA-TTCGTCAAA---CAA-GTTTCA---CAAAATACTAGAGTCAA-CAG-TT-ATCC-----TAG----ATAACG---AAAAGGTTCTTTTCTGCGGAAAG----AAAT--------TGGTAAAG-AAAAGATTGTA-TC----A-CTC----GAA-GTCGTAGTCTG-ACTTTTAAAATATT-TA--AAAGA-ATATGAA-GCTCGTGGTA-GAT--T-GAAGAAACACCGGT---TCG--AGA-G--------------GCTCAGGATGG-AA-TGGAA-TAC--AGA--GTCGATCGA--GG-TACCTTGAA-GAGGTGTAC-GACTAG-AGA-AGTTTCCTTATAACAGGGATAACTGAAATA------TACTATATACAAACACTGT-ACACATGTCAAATGT
gi|10 : acaataTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCA-TTGACA-TAACTTACACACTTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-ATCTA-CTCATAAGTCCCCAATTAATACATTATA-CACAAAC--GAAATAAGT-T-CA----C---TATA-T--------AA-ATCA-TTTATCAAA---CAA-ATTT-A---C-AAATACT-
gi|11 : TATTTTTATT--ACACCATTTTAATTTACTCGAGA-CTTAAC-TGCA-TTGACATTAGCTTACACACTTCACTGTTAAGAATCATTTATGAATGATATTCA-CATTTATGAT-ACTAA--GTA--ACAAGAGCCAAACGAA-TACA-CTCTGCCTCATATTTCCT-AATCAATACACTATATCACAAAC--AAAACAA-T-T-CA----C---TATATTA-CA
gi|12 : taatatTA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AGTAC-AAA-----GAGTAAG-CAG-TT-ATCC-----TAGCTAGG-ACCAT--AAAA---------TT---------------------------------AAAATGTTTTACTCGATCACCTC---AGAA-GTCGT-GATTGTACTTTTAAAAC-TT-TA--AAGAA-TTTTGAA-GCTCATGTTA-G-T--T-GTAC-AGCA-CGGT---
gi|13 : TTTTTATT--GCAC-ATTTTAGTTTATT-GAGA-CTTAAC--GCA-TTGCTT-TA---TA-ACACTTCACTGTT-ATAATCATTTATCAATTATATTCACCG-TTAT-AT-ACTc
gi|14 : attggTATGAA---CCGTGCTATA-T--TCGAAG-AACA-CGGT---TCGACAGAAGAGTGAAA-CT-AAAACTCAGG-T-GCAA-T-AAA-TAC--AG---GT--ATCGAGGGGTTACCTTGAA-G-GG
gi|15 : ACAAGT-T-CA----C---TATA-TA-CA---GAA-ATTA-TTTCTCAAA---CAA-AA-----------ATACT-GAGTCAA-CAG-TT-ATCC-----TAG----G-A
gi|2 : GTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAC-TGCAATTGACA-TAACTTGCACACTTCACTGTT-AGAATCATTTATGAATTATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTTCTCAATCAATACACTATA-CAGAAAC--GAAACAAGT-T-CAATTACATGTATA-TA-CAAACGAA-ATAA-TT-CTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAA----G-ACCGT--AAAA---------TTGAGAAAAG----AAAT--------T-GTAAAGTAAAATGTTGTACTC----ACCTC---AGAG-GTCGT-GTCTGTACTTTTAAAAC-TT-TA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGT---TCGA-AGA-G--------------ACTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATC-AAGGG-TACCTTGAA-G-GGTGTTC-GACTAGAAGA-GGT---CCTAT-ACA-GGATACCTGAAACATACATGTACTATATACAAACAT-GTAACAC-TGT-CAATGTGA
gi|3 : tatatacatatgGTATTTTTATT--ACACCATTTTAGTTTACTCGAGA-CTTAAT-TGCA-TTGACA-AAACTTACACACGTCACTGTT-AGAATCATTTATGAATCATATTCA-CA-TTATGAT-ACTAA--AAAT-ACAAGAGCCAAACGAA-TACA-CTCTG-CTCATATTTCCTCAATCAATACACTGTA-CAGAAAC--GAAAGCAGT-T-CA----C---TATA-TA-CAAACGAA-ATAA-TTTCTCAAA---CAA-AATT-A---C-AAATACT-GACTCAA-CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTGAGAAAAGAAGAAAATGAAAGTAAT-G-AAGGTAAAATGTTGCACTC----ACCTC---AGAG-ATCGT-GTCTGTACTTTTAAAAC-TT-AA--AAGAA-TTATGAA-GCTCGTGCTA-G-T--T-GTAG-AGCA-CGGT---T----AGA--AGTG----------ACTCAGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAC-GACTAG-AGA-TGT---CCTAT-ACA-GGATAGCTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|4 : aTCGAGA-TCTTAT-TGCA-TTGTCAGTAATTTATAC-------CGTT-AGAATCGTT-ATGAAATATATTCA-CA-TTGTGAT-ACTAT--AAAT-ACAACAGCCAAACGAAATACA-CTCTA-TTCATATTTCCTCAATTGATACACTATA-CCCAAAC--GAAAAAAGT-T-CA----A---TGTA-TA-CAAACGAA-ATGA-GTTATCAAG---CAA-AATT-A---C-AAACACT-GAGTT---CAG-TT-ATCC-----TAG----G-ACCGT--AAAA---------TTAAGAAAAG----AAAT--------T-G------AAAA----ATACTC----AC--------AA-ATAG--------------AAAA-----TAAGAAAAA-TTATGAG-ACCCGTGCTG-G-T--T-GTTA-AACA-CGGT---TCGA-AGA-GGGAAAAA-AA-CAAACTCAGG-T-G-AA-T-AAG-CAC--AG---GT--ATCGGGTAG-TACCTTGAA-G-GATGTTA-GACTAA-AAA-GGT---CCTTT-ATA-AGATAATTCAAACA------TACTATATACAAACAT-GTAAAAC-TGT-GAATGTGGCA
gi|5 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGCCAAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-CG----C---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA-----GTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------TTGAGAAAAG----AAAT--------C-GTAAAGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTA-TTTTAAAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-CGGT---TCAA-AGA-GAGTGAAACCC-TAAACTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAACA------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGACg
gi|6 : GAATCATG-ATGAATTATATCCA-CA-TTATAAT-ACTAA--AAAT-ACGAGAGC-AAACAAA-TACA-CTCTA-CTCAT--TCCCTCAATTAAAACACTACA-CACATGC--GAAACAAGT-T-CG----C---TATA-TA-CAAACGAA-ATA----TCTCTAA---CAA-ACTT-A---C-AAATA-----GTCAA-CAG-TT-ATCC-----TAG----G-ACTGT--AAAA---------T-GAGAAAAG----AAAT--------C-GTAAAGTAGAATGTTTTACTC----ACCTA---AGAA-GTCGT-GTCTGTATTTT--AAAC-TT-TA--ACGAA-TTATGAA-GCTCTTGCCA-T-T--T-GTAG-AGCA-GGGT---TCAA-AGA-GAGTGAAA-CCCTAAACTCGGG-T-G-AA-T-AAA-TAC--AG---GT--ATCGAGGGG-TACCTTGAA-G-GGTGTAT-GACTTG-AGATGGT---CATAT-ACA-GAATAACTGAAA-A------TACTATGTACAAAAAC-ATAACAA-TGT-AAAGGTGAC
gi|7 : AAACGAA-ATAA-TTTTTCAAA---CAA-AATT-A---C-AAATACT-GAGTCAAACAG-TTTATCC-----TAG----G-AACGT--AAAA---------T-GAGAAAAG----AAAT--------T-GTAAAGTAAAATGTTGTACTC----ACCTC---AGAA-GTCGT-----------TTGAAAT-TT-TA--AAGAA-TTATGAAAGCTCGTGCTA-G-T--T-GTAG-AGCA-CGGT---TCGA-AGA-GA--------------CTCAGG-T-G-AAGT-AAAATAC--AG---GT--ATCGAGGGG-TACCTTGAAAG-GGTGTAC-GACTCG-AGA-GGT---CCTAT-ACA-GGATAACTGAAACA------TACTATATACAAACAT-GTAACAC-TGT-CAATGTGACA
gi|8 : TA-TA-GAAACGAA-ATAAAGTTCTCAGAAGGCAAGAATT-AG--C-AAA-----GAGT-AA-CAGGTT-ATCCGTAGCTAG----G-ACCATTTAAAA---------TT---AAAA-----------------T-GT---GTTTA-TCTCGTGATC----ACCTCGTTAGAATGTCG--GCTGGTACTTTTAAAAT-TGGTA--AAGAAGTTTTGAA-GC-CATGTTA-G-TGTT-GTC--AGCA-CGGT---CCGC-A-A-GAGTGAAACCC-TAAAATCAGG-T-G--A-T--AA-TACTTAGTCAGT---TCGAGGGG-TACTTTACA-GCGGTGTACAGACTAG-AGA-GGT---CTT-T-ACA-GATTAACTCAACCA------CA
gi|9 : ---CAA-AATT-A---A-AAATACT-ATGTCAA-AAG-TT-ATCC-----TAG----G-ACCAC--AAGA---------TTGAAAACAT----AAAT--------T-GTAATGTAAAATGTTTTACTC----CTCTG---AGAA-ATCGT-GTCTGAATTTTGAAAAT-GT-TA--ACGAA-TTATCAA-ACTCGTGACA-A-T--T-GTAG-AGCA-CGGTACCTTGA-AG
gi|9 : tcGG-TACCTTGAA-G-GCTGTAC-GACTAG-AAA-GGT---CCTAT-GCA-GGATAACTGAAACA------CGCTATATGCAAGCAT-GTTACAG-TGT-AAATGTAACgctgtacgactagaaaggtcctatgcaggataactgaaacacgctatatgcaagcatgttacagtgtaaatgtaac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AAGTGTAAGACTTTATGCTCTACAATAAGGCTATTGTGATGGTATGTTCAAGGGA
Unaligned ( gi|17 ): ATAACTTTCTGAAAATGTTTCCAGATTTTAAATACTGGGT