lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 2 1 111 1 2222 11 11 222222 22 1 22 1 777777777777777 1 22 22222222 33 99999999999999999999999 1 6666666666 2222 11 1 2 1 11 3 11 55 66666 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 4 1 4444 1 111 1 2222 333 11 1 1 1 2 1 1 1111 2222 333333 11 1111 111 2 1111 222 5555555555555555555555555 1111111 666666 1 11111111111111 11 33333333333333333 111111 22222222222222222222
lowQualScore : 9 6 1 6 0 9 2 555 0 0 1111 33 33 888888 1 9 8 00 3 22 5 777777777777777 2 5 99 88888888 11 44444444444444444444444 3 6666666666 6 8888 1 99 6 7 0 8 3 88 2 66 1 55 55555 3 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 7 5 4444 3 1 999 7 3333 000 2 44 3 3 3 0 3 6 6 2 0 7777 1111 2 888888 22 66 8 6 0000 8 6 6 555 5 3 3 8 99 5 3 5 2222 5 5 1 000 88 55 0 3 1111111111111111111111111 8888888 444444 33 4 99999 5 0 5 77777777777777 4 1 00 66 66 0 9999 1 666 4 1 66 66 11111111111111111 111111 0 5 4 4 4 4 66 4 4 4 5 22222222222222222222 2 999 3 6666 1 3 1
lowQualScore : . . . . . . . ... . . .... .. .. ...... . . . .. . .. . ............... . . .. ........ .. ....................... . .......... . .... . .. . . . . . .. . .. . .. ..... . ................................................................................................................................................. . . . . .... . . ... . .... ... . .. . . . . . . . . . .... .... . ...... .. .. . . .... . . . ... . . . . .. . . . .... . . . ... .. .. . . ......................... ....... ...... .. . ..... . . . .............. . . .. .. .. . .... . ... . . .. .. ................. ...... . . . . . . .. . . . . .................... . ... . .... . . .
lowQualScore : 0 7 0 7 0 2 5 000 0 2 2222 22 88 888888 0 0 3 33 3 33 0 555555555555555 5 0 00 00000000 55 55555555555555555555555 3 7777777777 0 3333 0 33 7 0 7 7 3 33 3 77 0 00 77777 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 3 0 7777 3 0 777 0 7777 333 5 00 3 7 3 0 7 7 7 3 5 0000 2222 5 222222 55 00 0 0 2222 0 7 7 222 7 6 7 4 22 3 0 7 1111 7 7 7 000 44 11 2 1 9999999999999999999999999 3333333 444444 99 4 44444 0 0 2 99999999999999 4 0 66 77 11 1 4444 9 333 4 4 99 99 11111111111111111 555555 8 0 0 0 0 0 33 0 0 0 7 88888888888888888888 2 666 1 5555 0 3 9
consensus : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATNCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCA-CAACAT-CTAAAGAACTTCATGAAG-ATAACACCCCAACCTTTCCCTTCTTTGNTTTAGCTCTATAAGTGCTGTTCTTGAACATTTCCCAAATATAAACTCTNTCCAAAATNGAAGAGTGTGTNCCTGAAAACACT-TTCAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGG-CAA-TTTAAA--TTCTA-AGCTTAGAATNTACACAAGG--TTTAAATATT-TTTTT-TCAAAA-----GAG--AGAATCNTTTGTCANTNNACACAAAGNCTTAAATATGNTTNCCAANAGGAGAA----TTATTCTTCAANCTATAAAGAATTATGAGTGTAGAAGAAAAGTTTAGCAGGANTTCCGAAT-GTCATNTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATAC-TGCA-N-AT-CTTAGAAT-ATGTTCG-CA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGNATTTTCTA-TTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCAGTGTTAGANGTAATAAA----CGAAGAGT---GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAA-TGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATAT---AATT-CTTTTATATACATGT---GAA-GTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAANAGTAT-GA---A-TATTCTT-GAA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCT-CTT--TAGTGAATTGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-AC-TT-AA-TCGCA------ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( gi|1 ) : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACA-AAACAT-CTAAAGAACTTCATGAAA-ATAACACCCC-----TTCC------TGGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAA--CTATCAAAAATATAAGA-TGTGTAT-TGCATGCAATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACAGGACAA-TTTAAA--TTCTATAGCTTAGAACATACACAAAGTTTTTAAATG---GTTTT-TCAAAATGTATGTGTTAGAATTA-TTG-CAGTATATA-AAGGAATTA---ATGATTGC--AGAGAAGAAGGCTTTGTGTTT--ATT--------ATTAT-----TAG------------GCAGGAATTCCAAATAGTCATG----AAA-TAAATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-G-AT-CTTAAAAT-ATGATCA-TA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAATAAA----CGAAGAGT---GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAA-TGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATAT---AATT-CTTTTATATACATGT---G---GTTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-GAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCT-TTT--TAGTGAATTGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-AC-TT-AA-TTGCA------ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAA-ACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTGT-GTTCTTGAACATTTCCCAAATATAAA--CTCTTCAAAATTGAAGAGTG-GTTC-TGAAAACACT-TTCAAGAAACAAGATTCATACTGGCCCT--TAGGTCAT----TATGCTGTGACTCATT-GGTTGATAATAGATAGG-CAATTTTAAA--TTCTAAGGCTTAGAAATTACACAAGG-GTTTAAATATTTTTTTT-TCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAA----TTATTTTTCAATTTATAAAGAATTATGAGTGTAGAAGAAAAGTTTAGCAGGATTTCAGAAT--TCATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATA-ATACTTAGAATAATGTTCAGCATTTGTAA---TCTGGTGC-GTTGGTGA-TGTAATGAATTTTCTATTTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCGGTGTTAGATGT-AT-AA----CGAAGAGTCGGGT-CT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAA-TGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATATTTCAATT-CTT---------TGT---A---------AAT---------ATTTCTT----T--CCTTGTGTGA-----TACAATAG--T-GG---G-TATTCTT-GAATTGTCAACTTTTGGTAC-----
gi|3 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCA-CAACAT-CTAAAGAACTTCATGAAG-ATAACACTCC-----TTCT------TGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAATA-AAGA--GTGTATCTGAAAACACT-TTCAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGGCAA-TTTAAA--TTCTA-AGCTTAGAATATACACAAGG--TTTAAATATT-TTTTT-TCAAA
gi|6 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcATCAACTTTTGGAT-ATTTTTTAGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATA-CAATAT-CTAAGGAACTTCTTGGAC-ATgag
gi|23 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcTATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AATca
gi|16 : AAAGAAACAAG-TTCATAC---TGCTCTCAGGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACAGG--AA-TGTATATGTTTTA-ATCTTATAATCTGAATAAAG--TGTAAATT---CTTTTCTCAAA
gi|14 : aaaaacagagtgttttAGAATTT-TTG-CAATTAATA-A--GACTTA----TGATTGC--ACAGAA------------CTT--AGC--------AT-AT-----T---------------CAG-AATTTCA--T-GTC-TT----AAA-TTAATCATTGAAACT-GGTAGATAC-GAAATATAC-TGCA-TTAT-CTTGAA----TGTTCA-CA-TTGTAAGACTCTG-TGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGAgagagaa
gi|29 : gAGAATTATACCTGCA-C-AT-CTTAGAAT-ATGTTTG-CA-TTGTAG--TTCTGGT
gi|13 : CTGGTGCTGTGGGTGA-TGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACT-----AGA-----AATGTTAAAAGTAATAAAGTTCTGTAGAAT---GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGG-CGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGTcatgt
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-AAA----CGAAGAGT---GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAA-TG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGT---A
gi|4 : ctaattgttttgtgacaaaTGTTAAATGTCACTAA----CAAA-AGT-------TA-TTTCAGC-GAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTG-AAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATAT---AATTTCTTTGATATAC-TGT---GAAGGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTGAT----TACAAAAGTAT-CA---A-TATTCTT-GAAACGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCT-TTT--TAGTG-ATTGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-AC-TT-AA-TTGCA------ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|30 : TTTCAGTCGAC-TACTAGATTGGGAC----------ATGG-TT-AATG--AATAA-TGAAAACCCAAGAat
gi|5 : ATGG-TTTAATG--AATAA-TGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATAT---AATT---TTTATATACATGT---GAAGGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTG----ATTACAAAAGTAT-GATTCA-TATTCTT-GAA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCT-CTT--TAGTGAATTGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-AC-TT-AA-TCACA------ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTG
gi|19 : A-TGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATATTTCAATT-CTT---------TGT-------------AAT---------ATTTCTT----T--CCTTGTGTG----ATTACAATAGTAT-GG---G-TATTC
gi|20 : ATCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG-------------TTTATGTACA
gi|20 : tGTA-TTATATACAGATAT---AATT-CTTTCATATACATGTCAAG---GTTTTCAATC-gagggtctacgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|7 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctacT-TTTTTAAATACATGT---GAATGTTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTGAT----TACATAAGTAT-GA---A-TATTCTT-GAA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCT-CTT--TAGTGAATTGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-AC-TT-AA-TCGCA------ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAA
gi|8 : T-TTTTTGTATACATATTAAG---GTTTTCAAGG-GTGTG---TTTTTTT-TGT----TTGTTT--TTTTTT-------TAT-TA---T-TATTC-----G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT--CTCT-ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G--------AA-TT----------------------------TGT---------ATGCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|15 : TTTTCTT-TCTTTCATTGTATGAT----TACAAAAGTAT-GA---A-TATTCTT-GAA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCT-CTT--TAGTGAATTACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTACt
gi|18 : tttacttgtacattataggcttcttTTGTGTGAT----TACAAT-GTATTGA---ACTATTCTTTGAA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCT-CTT--TAATGAATTGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|9 : TAT-GA---A-TATTTTT-GAA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT--AAA-GAAATACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-AC-TT-AATTTGCA------ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTG
gi|10 : tttttcttttaactaCTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCT-CTT--TAATGAATTACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-AC-TT-AA-TCGCA------ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTGc
gi|11 : TTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTT--TAATGAATTACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTAC-TTTAA-TCGCA------ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|25 : tATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTttat
gi|21 : -----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATG-T-G--------AA-TT----------------------------TGT---ATGC-CAT-----T----AGGACCCCAATATTT-GCAATAAACTAATCTGAATCT
gi|17 : TATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGTT-GT-CTTCA------AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|22 : TT-GT-AC-TT-A---TACATGTCTTATACATACT-T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGTt
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA
Alignments
lowQualScore : 11 1111 11 222222 1 1 11 77777777777777 222 11 444 22222222 1 1 11 2222 1 1 11 1 11 1 1 22 111 1 1 22222 11 11 1 11 1 33333333 222 11 1 1 1 8888888888888888888888888 22 111 2 1 3 22 1 111 1 1 1111 1 1 222 11 1111 11 1111 22222222 222222 11 222222 11111111111111 1111111 22222222222222222 111111 11111 1111111
lowQualScore : 0 3 2 3 8 5 1 11 8 7777 88 11 333333 1 4 0 0 00 6 22222222222222 1 0 6 6 333 66 6 7 111 66666666 2 0 3 0 33 1111 0 2 0 22 0 33 0 0 22 33 111 0 5 55555 33 66 5 1 22 6 00 3 88888 1 888 1 66666666 7 333 00 7 3 3 6 1 2 0000000000000000000000000 6 1 6 88 555 3 3 7 3 0 11 0 3 000 0 0 5555 55 0 1 0 8 000 3 2 33 1 5 99 7777 0 11 5 1 6 3 6 3 6 5 5 77 2 6 77 1 3 1 5 0000 5 5 0 11111111 0 1 666666 5 0 5 3 33 111111 2 4 77777 4 4 4 55555555555555 4 99 4 3333333 8888 0 55 4 0 66 66 88888888888888888 000000 3 3 3 3 4 4 4 00000 4 4 777 1 1111111 0 6 2 6666 0 3 0
lowQualScore : . . . . . . . .. . .... .. .. ...... . . . . .. . .............. . . . . ... .. . . ... ........ . . . . .. .... . . . .. . .. . . .. .. ... . . ..... .. .. . . .. . .. . ..... . ... . ........ . ... .. . . . . . . ......................... . . . .. ... . . . . . .. . . ... . . .... .. . . . . ... . . .. . . .. .... . .. . . . . . . . . . .. . . .. . . . . .... . . . ........ . . ...... . . . . .. ...... . . ..... . . . .............. . .. . ....... .... . .. . . .. .. ................. ...... . . . . . . . ..... . . ... . ....... . . . .... . . .
lowQualScore : 2 2 5 0 0 6 0 00 0 0000 88 00 000000 2 0 0 0 22 7 33333333333333 0 7 7 7 333 00 7 3 000 22222222 5 0 2 0 88 2222 0 5 0 55 0 88 0 0 22 88 000 0 5 00000 88 55 5 0 00 7 00 3 77777 0 333 0 22222222 3 333 00 3 3 3 7 0 3 3333333333333333333333333 7 0 7 33 333 7 3 3 2 0 00 0 2 222 0 0 0000 88 0 0 0 0 222 2 5 55 0 6 88 0000 8 00 6 7 7 5 7 2 7 7 7 99 2 2 99 4 4 4 0 6666 0 0 4 44444444 7 8 999999 0 5 0 4 88 666666 6 0 66666 4 4 4 22222222222222 0 55 0 0000000 5555 8 55 0 2 11 11 00000000000000000 555555 6 6 6 6 0 0 0 00000 0 0 000 3 4444444 4 5 9 1111 2 1 8
consensus : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAACACCCC-----TTCC-----TTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTAT-CAAAATA-AAGAGTGTGT--CTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAATTT-AAA--TTCTA-AG-CTTAGAATNTACACAAGG--TTTAAATATTTT-TTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAAGTTTT-AAATATGTTTTTCAAAAGG--------AGAATTATTTT-CAATTTATAAAG-AATTA-TGATTGCAGAGGAAAAG--------TTTA----------GCAGGAATTCAGAAT--TCATGT-TTAAATT-AATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATT-CTTTTATATACATGTGAA-GGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( family-3448 ) : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATNCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAACACCCCAACCTTTCCCTTCTTTGNTTTAGCTCTATAAGTGCTGTTCTTGAACATTTCCCAAATATAAACTCTNTCCAAAATNGAAGAGTGTGTNCCTGAAAACA-----CT-TTCAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATA-GG-CAATTT-AAA--TTCTA-AG-CTTAGAATNTACACAAGG--TTTAAATATTTT-TTTTCAAAA-----GAG--AGAATCNTTTGTCANTNNACACAAAGNCTT-AAATATGNTTNCCAANAGG--------AGAATTATTCTTCAANCTATAAAG-AATTA-TGAGTGTAGAAGAAAAG--------TTTA----------GCAGGANTTCCGAAT-GTCATNTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATAC-TGCA-NAT-CTTAGAAT-ATGTTC-GCA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGNATTTTCTA-TTGTTTT-GTGACAAATT-CACTGTGAAAGACAGGCAGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATT-CTTTTATATACATGTGAA-G-TTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAANAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|1 : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACAAAA-CAT-CTAAAGAACTTCATGAAA-ATAACACCCC-----TTCC------TGGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAA--CTATCAAAAATATAAGA-TGTGTA-TTGCATGCA-----ATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACA-GGACAATTT-AAA--TTCTATAG-CTTAGAACATACACAAAGTTTTTAAATG--GT-TTTTCAAAATGTATGTGTTAGAATTA-TTG-CAGTATATA-AAGGAATT-A---ATGATTGC--AGAGA--------AGAA
gi|1 : ACACAAAGTTTTTAAATG-GTTTTTCAAAATGTATGTGTTAGAATTATTG--CAGTATATAAAGGAATTAATGATTGCAGAGAAGAAGGCTTTGTGTTTATTATTATTAGGCAGGAATTCCAAATAGTCATG----AAATA-AATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-GAT-CTTAAAAT-ATGATC-ATA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAATAAA----CGAAGAGT--GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAATGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATT-CTTTTATATACATGTG---G-TTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCTTTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTGggctttgtgtttattattattaggcaggaattccaaatagtcatgaaataaatcattgaaactaggtagtacagaaatatacctgcggatcttaaaatatgatcatattgtaactctggtgctgtgggtgatgaaatgcattttctattgttttgtgacaaatttcactgtgaaagacaggcaatgttagaggtaataaacgaagagtgtgctaatttcagccgactactagattgggacaaatttatatggttaatggataatgtaaacccgagaatcctctcatctgtttccaaatttataaacttgtattgtgactaatataattcttttatatacatgtggttttcaatcctttgcaattttttttctccttgtgtgatatattacaaaagtatgaatattcttgaacgtcaactcttggtacgaggcggaacaaatctatatacctttttagtgaattgcgaatgaatgaaaggtgtatgtatacatgaaaataatattactaataatatttgtatatttatgactatatgttccctatgcatcgtcccttggtatctttagttgctgatcaattatgttgtacttaattgcaatacttatatacatgtctgatactatgcccttaggggcccattatttggcaataaaatatctgtatctg
gi|10 : ataaacttttggagttttttcagaacttggtagatttcctatatcctacaacattttaagcagtatgctgaattattggtatcggctagaaaacatagaaccttttaataacataatatcaagtgcatacaaaacatctaaagaacttcatgaaaataacaccccttcctggtttagctcgataaatgccattcttgaacatttcccaaatataaactatcaaaaatataagatgtgtattgcatgcaatgtgaaagaaacaagttcatatcccttatagatcattatactcgactcattgggttgaaaatagacaggacaatttaaattctatagcttagaacatCTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCTCTTT-AATGAAT-------TACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTG
gi|11 : TTTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTTTAATGAAT-------TACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTACTTTA-----A-TC-GCA---ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-AAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAATG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGTAttat
gi|13 : ctaattgttttgtgacaaaCTGGTGCTGTGGGTG-ATGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACTA-GAAA---------TGTTAAAAGTAATAAAGTTCTGTAGAAT--GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGGCGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGT
gi|14 : G--------AGAATT--TTTGCAATTAATAA-G-ACTTA-TGATTGCACA-GAA-----------CTTA----------GCAT--ATTCAGAAT-TTCATGTCTTAAATT-AATCATTGAAACT-GGTAGATAC-GAAATATAC-TGCATTAT-CTT-GA---ATGTTC-ACA-TTGTAAGACTCT-GTGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGA
gi|15 : TTTTCTT-TCTTTCATTGTATGAT---T-ACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCTCTTT-AGTGAAT-------TACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTAC
gi|16 : tttacttgtacattataggcttcttAAAACAGAGTGTT-TTAAAGAAACAAG-TTCATACTG-CTCT--CAGGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACA-GG--AATGT-ATATGTTTTA-AT-CTTATAATCTGAATAAAG--TGTAAAT-TCTT-TTCTC-AAA-----GAG--AGAA
gi|17 : aTATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGT-T-----G-TCTTCA---AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|18 : TTGTGTGAT---T-ACAAT-GTATTGA---ACTATTCTTTG-AA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCTCTTT-AATGAAT-------TGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|19 : ATGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATA----------------------------TTTCAATT-CTTTGTAATATTTCT-T-T--CCTTGTGTGA----TTACAATAGTAT-GG---G-TATTC
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAA-ACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTG-TGTTCTTGAACATTTCCCAAATATAAACTCTT--CAAAATTGAAGAGTG-GTTC-TGAAAACA-----CT-TTCAAGAAACAAGATTCATACTGGCCCT--TAGGTCAT----TATGCTGTGACTCATTGG-TTGATAATAGATA-GG-CAATTTTAAA--TTCTA-AGGCTTAGAAATTACACAAGGG-TTTAAATATTTTTTTTTCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTT-AAATATGTTTTTCAAAAGG--------AGAATTATTTTTCAATTTATAAAG-AATTA-TGAGTGTAGAAGAAAAG--------TTTA----------GCAGGATTTCAGAAT--TCATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATAATACTTAGAATAATGTTCAGCATTTGTA--A-TCTGGTGC-GTTGGTG-ATGTAATGAATTTTCTATTTGTTTT-GTGACAAATT-CACTGTGAAAGACAGGCGGTGTTAGATGT-AT-AA----CGAAGAGTCGGGTCT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAATGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATA----------------------------TTTCAATT-CTTTGTAAATATTTC-TTT--CCTTGTGTGA-----TACAATAG--T-GG---G-TATTCTT-G-AATTGTCAACTTTTGGTAC-----
gi|20 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagTCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG----------TTTATGTACA
gi|20 : taGTA-TTATATACAGATATAATT-CTTTCATATACATGTCAAGG-TTTTCAATC-gagggtctacgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|21 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctac-----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATGT
gi|21 : -TATGCCATT----AGGACCCCAATATTTG-CAATAAACTAATCTGAATCTgaatttgtatgccattaggaccccaatatttgcaataaactaatctgaatct
gi|22 : ctgtatgttcctttgcacctttcttagtattcattagttgctgattaattatgtgaatttgTT-GT-ACTT-ATACATG-TC-TTATACATACT-----T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|23 : TATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AAT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|25 : ATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTt
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGT
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
gi|29 : AGAATTATACCTGCA-CAT-CTTAGAAT-ATGTTT-GCA-TTGTA--GTTCTGGTt
gi|3 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAACACTCC-----TTC------TTGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTAT-CAAAATA-AAGAGTGTAT--CTGAAAACA-----CT-TTCAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGG-CAATTT-AAA--TTCTA-AG-CTTAGAATATACACAAGG--TTTAAATATTTT-TTTTC-AAA-----GAG--catgt
gi|30 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcTTTCAGTCGAC-TACTAGATTGGGAC-A---------TGG-TT-AATG--AATAATGAAAACCCAAGA
gi|4 : TGTTAAATGTCACTAA----CAAAA-----GTT---ATTTCAG-CGAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTGAAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTTCTTTGATATAC-TGTGAA-GGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTGA----TTACAAAAGTAT-CA---A-TATTCTT-GAAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCTTTTT-AGTG-AT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|5 : ATGG-TTTAATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATATAATT---TTTATATACATGTGAA-GGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTGAT---T-ACAAAAGTAT-GATTCA-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-ACTT-A-----A-TC-ACA---ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTGat
gi|6 : ATCAACTTTTGGATATTTTTT-AGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATACAA-TAT-CTAAGGAACTTCTTGGAC-AT
gi|7 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcT-TTTTTAAATACATGTGAATG-TTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTGAT---T-ACATAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCTCTTT-AGTGAAT-------TGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-ACTT-A-----A-TC-GCA---ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAAca
gi|8 : T-TTTTTGTATACATATTAA-GGTTTTCAAGG-GTGTGT---TTTTTT-TGT----TTGTTTTTT---TT------TTAT-TA---T-TATTC------G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT----CTCT----ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G-------A-----A-T------------TTG---T---AT-----------------GCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|9 : TAT-GA---A-TATTTTT-G-AA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT-AAAGAAA-------TACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-ACTT-A-----ATTT-GCA---ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA
Alignments
lowQualScore : 11 1111 11 222222 1 1 11 44444444444 1 1 222 1 22222222 1 1 11 2222 1 1 11 1 11 1 1 22 111 1 1 22222 11 1 1 1 222 1111 3333 11111 11 555555555 2222 33 1 1 11 1 111 1 1 1111 1 1 1 11 1111 11 1111 22222222 111111 222222 11111111111111 1111111 22222222222222222 111111 11111 1111111
lowQualScore : 0 3 2 1 8 5 11 8 7777 88 11 333333 1 1 0 0 00 22222222222 999 2 6 7 3 222 6 3 3 66666666 1 0 3 0 33 1111 0 2 0 22 0 33 0 0 22 33 111 0 5 55555 33 5 5 1 5 88 111 4 9999 2222 99999 00 333333333 6 2222 44 3 3 7 3 2 66 0 3 000 0 0 5555 55 0 0 0 8 5 3 2 77 1 5 99 7777 0 11 5 1 6 3 6 3 6 5 5 77 2 6 77 1 3 1 5 0000 5 5 0 22222222 55 111111 4 0 0 5 5 66 111111 2 4 77777 4 4 4 55555555555555 4 99 4 3333333 8888 0 55 4 0 66 66 88888888888888888 000000 3 3 3 3 4 4 4 00000 4 4 777 1 1111111 0 6 2 6666 0 3 0
lowQualScore : . . . . . . .. . .... .. .. ...... . . . . .. ........... ... . . . . ... . . . ........ . . . . .. .... . . . .. . .. . . .. .. ... . . ..... .. . . . . .. ... . .... .... ..... .. ......... . .... .. . . . . . .. . . ... . . .... .. . . . . . . . .. . . .. .... . .. . . . . . . . . . .. . . .. . . . . .... . . . ........ .. ...... . . . . . .. ...... . . ..... . . . .............. . .. . ....... .... . .. . . .. .. ................. ...... . . . . . . . ..... . . ... . ....... . . . .... . . .
lowQualScore : 2 2 5 0 0 6 00 0 0000 88 00 000000 2 0 0 0 22 77777777777 333 0 7 3 3 777 7 7 3 22222222 0 0 2 0 88 2222 0 5 0 55 0 88 0 0 22 88 000 0 5 00000 88 5 5 0 0 00 555 0 5555 0000 77777 33 777777777 7 7777 00 3 3 3 2 5 55 0 2 222 0 0 0000 88 0 2 0 0 5 2 5 00 0 6 88 0000 8 00 6 7 7 5 7 2 7 7 7 99 2 2 99 4 4 4 0 6666 0 0 4 66666666 55 111111 4 1 5 0 4 99 666666 3 0 66666 4 4 4 22222222222222 0 55 0 0000000 5555 8 55 0 2 11 11 00000000000000000 555555 6 6 6 6 0 0 0 00000 0 0 000 3 4444444 4 5 9 1111 2 1 8
consensus : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAAT-A-AAGAGTGTNT-CTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAATTT-AAA--TTCTA-AG-CTTAGAATNTACACAAGG--TTTAAATATTTT-TTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA-GAATTATGATTGCAGAGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( family-3448 ) : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAAT-A-AAGAGTGTGT-CTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAATTT-AAA--TTCTA-AG-CTTAGAATNTACACAAGG--TTTAAATATTTT-TTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAATTA-TTTTCAATTTATAAAGAATTATGATTGCAGAGGAAAAGTTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|1 : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACAAAA-CAT-CTAAAGAACTTCATGAAA-ATAA----CA-----CCCCTTCC-TGGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAA--CTATCAAAAAT-ATAAGA-TGTGTATTGCATGCA-----ATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACA-GGACAATTT-AAA--TTCTATAG-CTTAGAACATACACAAAGTTTTTAAATG--GT-TTTTCAAAATGTATGTGTTAGAATTA-TTG-CAGTATATA-AAGGAATTA---ATGATTGC--AGAGAAGAA-GG-CTTTGTGTTT-------ATTATTATT--AG------------GCAGGAATTCCAAATAGT-CATG----AAA-TAAATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-GAT-CTTAAAAT-ATGATC-ATA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAATAAA----CGAAGAGT--GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAATGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGT---GGTTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCTTTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|10 : CTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCTCTTT-AATGAAT-------TACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTG
gi|11 : TTTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTTTAATGAAT-------TACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTACTTTA-----A-TC-GCA---ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-AAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAATG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGTAttat
gi|13 : ctaattgttttgtgacaaaCTGGTGCTGTGGGTG-ATGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACTA-GAAA---------TGTTAAAAGTAATAAAGTTCTGTAGAAT--GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGGCGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGT
gi|14 : GAGAATT--TTTGCAATTAATAA-GACTTATGATTGCACAGAA----CTTAGCAT--ATTCAGAAT--TTCATGTCTTAAA-TTAATCATTGAAACT-GGTAGATAC-GAAATATA-CTGCATTAT-CTT-GA---ATGTTC-ACA-TTGTAAGACTCT-GTGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGA
gi|15 : TTTACTTGTACAT-TATAGGCTT-----C-TTTT----TTCTTTC-TTT--CATTGTATGAT---T-ACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCTCTTT-AGTGAAT-------TACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTAC
gi|16 : AAAACAGAGTGTT-TTAAAGAAACAAG-TTCATACTG-CTCT--CAGGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACA-GG--AATGT-ATATGTTTTA-AT-CTTATAATCTGAATAAAG--TGTAAAT-TCTT-TTCTC-AAA-----GAG--AGAA
gi|17 : aTATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGT-T-----G-TCTTCA---AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|18 : TTGTGTGAT---T-ACAAT-GTATTGA---ACTATTCTTTG-AA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCTCTTT-AATGAAT-------TGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|19 : ATGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAATATTTCT-T-T--CCTTGTGTGA----TTACAATAGTAT-GG---G-TATTC
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAAACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTGT-GTTCTTGAACATTTCCCAAATATAAACTCT-TC-AAAATTG-AAGAGTGGTT-CTGAAAACA-----CT-TTCAAGAAACAAGATTCATACTGGCCCT--TAGGTCAT----TATGCTGTGACTCATTGG-TTGATAATAGATA-GG-CAATTTTAAA--TTCTA-AGGCTTAGAAATTACACAAGGG-TTTAAATATTTTTTTTTCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAATTATTTTTCAATTTATAAAGAATTATGAGTGTAGAAGAAAAGTTTAGCAGGATTTCAGAAT--T-CATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATAATACTTAGAATAATGTTCAGCATTTGTA--A-TCTGGTGC-GTTGGTG-ATGTAATGAATTTTCTATTTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCGGTGTTAGATGT-AT-AA----CGAAGAGTCGGGTCT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAATGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAAATATTTC-TTT--CCTTGTGTGA-----TACAATAG--T-GG---G-TATTCTT-G-AATTGTCAACTTTTGGTAC-----
gi|20 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagTCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG----------TTTA--TGTACA---GAGGGTCT
gi|20 : taGTA-TTATATACAGATATAA-TTCTTTCA--TATACATGTCAAGGTTTTCAATC-acgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|21 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctac-----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATGT
gi|21 : -TATGCCATT----AGGACCCCAATATTTG-CAATAAACTAATCTGAATCTgaatttgtatgccattaggaccccaatatttgcaataaactaatctgaatct
gi|22 : ctgtatgttcctttgcacctttcttagtattcattagttgctgattaattatgtgaatttgTT-GT-ACTT-ATACATG-TC-TTATACATACT-----T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|23 : TATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AAT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|25 : ATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTt
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGT
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
gi|29 : AGAATTATACCTGCA-CAT-CTTAGAAT-ATGTTT-GCA-TTGTA--GTTCTGGTt
gi|3 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CTCCTT-CTTGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAAT-A-AAGAGTGTAT-CTGAAAACA-----CT-TTCAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGG-CAATTT-AAA--TTCTA-AG-CTTAGAATATACACAAGG--TTTAAATATTTT-TTTTC-AAA-----GAG--catgt
gi|30 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcTTTCAGTCGAC-TACTAGATTGGGAC-A---------TGG-TT-AATG--AATAATGAAAACCCAAGA
gi|4 : TGTTAAATGTCACTAA----CAAAA-----GTT---ATTTCAG-CGAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTGAAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTTCTTTGA--TATAC-TGTGAAGGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTGA----TTACAAAAGTAT-CA---A-TATTCTT-GAAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCTTTTT-AGTG-AT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|5 : ATGG-TTTAATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATATAA-TT--TTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTGAT---T-ACAAAAGTAT-GATTCA-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-ACTT-A-----A-TC-ACA---ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTGat
gi|6 : ATCAACTTTTGGATATTTTTT-AGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATACAA-TAT-CTAAGGAACTTCTTGGAC-AT
gi|7 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcTTTTTTA--AATACATGTGAATGTTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTGAT---T-ACATAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCTCTTT-AGTGAAT-------TGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-ACTT-A-----A-TC-GCA---ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAAca
gi|8 : TTTTTTG--TATACATATTAAGGTTTTCAAGG-GTGTGT---TTTTTT-TGT----TTGTTTTTT---TT------TTAT-TA---T-TATTC------G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT----CTCT----ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G-------A-----A-T------------TTG---T---AT-----------------GCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|9 : TAT-GA---A-TATTTTT-G-AA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT-AAAGAAA-------TACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-ACTT-A-----ATTT-GCA---ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA
Alignments
lowQualScore : 11 1111 11 222222 1 1 11 44444444444 1 111 2222 1 222222 1 1 11 11 2222 1 1 11 1 11 111 1 11 11 1 22222 11 222 1 222 11 333 222222 1111 333333 2222 33 1 1 11 1 111 1 1 1111 1 1 1 11 1111 11 1111 22222222 111111 222222 11111111111111 1111111 22222222222222222 111111 11111 1111111
lowQualScore : 0 3 2 1 8 5 11 8 7777 88 11 333333 1 1 0 0 00 22222222222 6 7 2 333 7777 3 1 6 555555 1 0 0 33 33 1111 0 2 0 22 0 33 111 22 0 33 77 7 5 55555 33 111 1 5 22 111 1 1 88 222 444444 6666 999999 6 2222 44 3 3 7 3 2 66 0 3 000 0 0 5555 55 0 0 0 8 5 3 2 77 1 5 99 7777 0 11 5 1 6 3 6 3 6 5 5 77 2 6 77 1 3 1 5 0000 5 5 0 22222222 55 111111 4 0 0 5 5 66 111111 2 4 77777 4 4 4 55555555555555 4 99 4 3333333 8888 0 55 4 0 66 66 88888888888888888 000000 3 3 3 3 4 4 4 00000 4 4 777 1 1111111 0 6 2 6666 0 3 0
lowQualScore : . . . . . . .. . .... .. .. ...... . . . . .. ........... . . . ... .... . . . ...... . . . .. .. .... . . . .. . .. ... .. . .. .. . . ..... .. ... . . .. ... . . .. ... ...... .... ...... . .... .. . . . . . .. . . ... . . .... .. . . . . . . . .. . . .. .... . .. . . . . . . . . . .. . . .. . . . . .... . . . ........ .. ...... . . . . . .. ...... . . ..... . . . .............. . .. . ....... .... . .. . . .. .. ................. ...... . . . . . . . ..... . . ... . ....... . . . .... . . .
lowQualScore : 2 2 5 0 0 6 00 0 0000 88 00 000000 2 0 0 0 22 77777777777 7 3 0 000 0000 3 0 7 222222 0 0 0 22 88 2222 0 5 0 55 0 88 000 22 0 88 00 0 5 00000 88 000 0 0 00 555 0 0 00 777 000000 0000 333333 7 7777 00 3 3 3 2 5 55 0 2 222 0 0 0000 88 0 2 0 0 5 2 5 00 0 6 88 0000 8 00 6 7 7 5 7 2 7 7 7 99 2 2 99 4 4 4 0 6666 0 0 4 66666666 55 111111 4 1 5 0 4 99 666666 3 0 66666 4 4 4 22222222222222 0 55 0 0000000 5555 8 55 0 2 11 11 00000000000000000 555555 6 6 6 6 0 0 0 00000 0 0 000 3 4444444 4 5 9 1111 2 1 8
consensus : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATCAAAA-TA-AAGA-GTGTATCTGAAAACA-----CTTTNAA-GAAACAAG-TTCATACT-GCCCTTA--GGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GGTTT--AAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTAT-AAGA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAA-T--TCATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( family-3448 ) : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATCAAAA-TA-AAGA-GTGTNTCTGAAAACA-----CTTTNAA-GAAACAAG-TTCATACT-GCCCTTA--GGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GGTTT--AAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTAT-AAGAATTATGATTGCAGAGGA----CTTAGCAGGAATTCAGAA-T--TCATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|1 : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACAAAA-CAT-CTAAAGAACTTCATGAAA-ATAA----CA-----CCCCTTCCT-GGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAACT--ATCAAAAATATAAGATGTGTAT-TGCATGCA-----ATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACA-GGACAA-TTTAAA--TTCTATA-GCTTAGAACATACACAA-AGTTTTTAAATG-GTTTTT--CAAAATGTATGTGTTAGAATTATT-G-CAGTATATA-AAGGAATTAA---TGATTGC--AGAGAAGAAG-G-CTTTGTGTTTAT-------TATTATT----AGG----------CAGGAATTCCAAA-TAGTCATG----AAA-TAAATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-GAT-CTTAAAAT-ATGATC-ATA-TTGTA--ACTCTGGTGCTGTGGGTG-ATGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAATAAA----CGAAGAGT--GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAATGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGT---GGTTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCTTTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|10 : CTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCTCTTT-AATGAAT-------TACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTG
gi|11 : TTTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTTTAATGAAT-------TACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTACTTTA-----A-TC-GCA---ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-AAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAATG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGTAttat
gi|13 : ctaattgttttgtgacaaaCTGGTGCTGTGGGTG-ATGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACTA-GAAA---------TGTTAAAAGTAATAAAGTTCTGTAGAAT--GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGGCGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGT
gi|14 : GAGAATT--TTTGCAATTAAT-AAGACTTATGATTGCACAGAA----CTTAGCAT--ATTCAGAATT--TCATGTCTTAAA-TTAATCATTGAAACT-GGTAGATAC-GAAATATA-CTGCATTAT-CTT-GA---ATGTTC-ACA-TTGTAAGACTCT-GTGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGA
gi|15 : TTTACTTGTACAT-TATAGGCTT-----C-TTTT----TTCTTTC-TTT--CATTGTATGAT---T-ACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCTCTTT-AGTGAAT-------TACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTAC
gi|16 : AAAACAGAGTGTTTTAAA-GAAACAAG-TTCATACT-GCTCTCA--GGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACA-GG--AA-TGTATATGTTTTA-A-TCTTATAATCTGAATAA-AGTGT--AAAT--TCTTTTCTC-AAA-----GAG--AGAA
gi|17 : aTATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGT-T-----G-TCTTCA---AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|18 : TTGTGTGAT---T-ACAAT-GTATTGA---ACTATTCTTTG-AA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCTCTTT-AATGAAT-------TGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|19 : ATGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAATATTTCT-T-T--CCTTGTGTGA----TTACAATAGTAT-GG---G-TATTC
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAAACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTGT-GTTCTTGAACATTTCCCAAATATAAACTCT-TCAAAATTG-AAGA-GTGGTTCTGAAAACA-----CTTTCAA-GAAACAAGATTCATACTGGCCCTTA--GGTCAT----TATGCTGTGACTCATT-GGTTGATAATAGATA-GG-CAATTTTAAA--TTCTA-AGGCTTAGAAATTACACAAGGGTTT--AAATATTTTTTTTTCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAATTATTTTTCAATTTATAAAGAATTATGAGTGTAGAAGAAAAGTTTAGCAGGATTTCAGAA-T--TCATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATAATACTTAGAATAATGTTCAGCATTTGTA--A-TCTGGTGC-GTTGGTG-ATGTAATGAATTTTCTATTTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCGGTGTTAGATGT-AT-AA----CGAAGAGTCGGGTCT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAATGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAAATATTTC-TTT--CCTTGTGTGA-----TACAATAG--T-GG---G-TATTCTT-G-AATTGTCAACTTTTGGTAC-----
gi|20 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagTCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG----------TTTA--TGTACA---GAGGGTCT
gi|20 : taGTA-TTATATACAGATATAA-TTCTTTCA--TATACATGTCAAGGTTTTCAATC-acgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|21 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctac-----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATGT
gi|21 : -TATGCCATT----AGGACCCCAATATTTG-CAATAAACTAATCTGAATCTgaatttgtatgccattaggaccccaatatttgcaataaactaatctgaatct
gi|22 : ctgtatgttcctttgcacctttcttagtattcattagttgctgattaattatgtgaatttgTT-GT-ACTT-ATACATG-TC-TTATACATACT-----T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|23 : TATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AAT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|25 : ATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTt
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGT
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
gi|29 : AGAATTATACCTGCA-CAT-CTTAGAAT-ATGTTT-GCA-TTGTA--GTTCTGGTt
gi|3 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CTCCTT-CTTGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTATCAAAA-TA-AAGA-GTGTATCTGAAAACA-----CTTTCAA-GAAACAAG-TTCATACT-GCCCTTA--GGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGG-CAA-TTTAAA--TTCTA-A-GCTTAGAATATACACAA-GGTTT--AAATA-TTTTTTTTC-AAA-----GAG--catgt
gi|30 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcTTTCAGTCGAC-TACTAGATTGGGAC-A---------TGG-TT-AATG--AATAATGAAAACCCAAGA
gi|4 : TGTTAAATGTCACTAA----CAAAA-----GTT---ATTTCAG-CGAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTGAAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTTCTTTGA--TATAC-TGTGAAGGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTGA----TTACAAAAGTAT-CA---A-TATTCTT-GAAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCTTTTT-AGTG-AT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|5 : ATGG-TTTAATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATATAA-TT--TTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTGAT---T-ACAAAAGTAT-GATTCA-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-ACTT-A-----A-TC-ACA---ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTGat
gi|6 : ATCAACTTTTGGATATTTTTT-AGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATACAA-TAT-CTAAGGAACTTCTTGGAC-AT
gi|7 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcTTTTTTA--AATACATGTGAATGTTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTGAT---T-ACATAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCTCTTT-AGTGAAT-------TGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-ACTT-A-----A-TC-GCA---ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAAca
gi|8 : TTTTTTG--TATACATATTAAGGTTTTCAAGG-GTGTGT---TTTTTT-TGT----TTGTTTTTT---TT------TTAT-TA---T-TATTC------G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT----CTCT----ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G-------A-----A-T------------TTG---T---AT-----------------GCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|9 : TAT-GA---A-TATTTTT-G-AA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT-AAAGAAA-------TACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-ACTT-A-----ATTT-GCA---ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA
Alignments
lowQualScore : 11 1111 11 222222 1 1 11 44444444444 1 1 1111 1 22222222 1 11 11 2222 1 1 11 1 11 111 1 11 2222 1 22222 11 1 1 1 222 11 3333 333333333 6666666666666 2222 33 1 1 11 1 11 1 1 222 1 1 1 11 1111 11 1111 22222222 111111 222222 11111111111111 1111111 22222222222222222 111111 11111 1111111
lowQualScore : 0 3 2 1 8 5 11 8 7777 88 11 333333 1 1 0 0 00 22222222222 999 2 6 7 3 3333 3 6 66666666 1 0 33 33 1111 0 2 0 22 0 33 111 22 0 33 1111 5 55555 33 5 5 1 5 22 111 1 1 88 1111 000000000 5555555555555 6 2222 44 3 3 7 3 8 66 0 3 33 0 0 000 55 0 0 0 8 5 3 2 77 1 5 99 7777 0 11 5 1 6 3 6 3 6 5 5 77 2 6 77 1 3 1 5 0000 5 5 0 22222222 55 111111 4 0 0 5 5 66 111111 2 4 77777 4 4 4 55555555555555 4 99 4 3333333 8888 0 55 4 0 66 66 88888888888888888 000000 3 3 3 3 4 4 4 00000 4 4 777 1 1111111 0 6 2 6666 0 3 0
lowQualScore : . . . . . . .. . .... .. .. ...... . . . . .. ........... ... . . . . .... . . ........ . . .. .. .... . . . .. . .. ... .. . .. .... . ..... .. . . . . .. ... . . .. .... ......... ............. . .... .. . . . . . .. . . .. . . ... .. . . . . . . . .. . . .. .... . .. . . . . . . . . . .. . . .. . . . . .... . . . ........ .. ...... . . . . . .. ...... . . ..... . . . .............. . .. . ....... .... . .. . . .. .. ................. ...... . . . . . . . ..... . . ... . ....... . . . .... . . .
lowQualScore : 2 2 5 0 0 6 00 0 0000 88 00 000000 2 0 0 0 22 77777777777 333 0 7 3 3 7777 3 7 22222222 0 0 22 88 2222 0 5 0 55 0 88 000 22 0 88 0000 5 00000 88 5 5 0 0 00 555 0 0 00 7777 777777777 3333333333333 7 7777 00 3 3 3 2 8 55 0 2 22 0 0 222 88 0 2 0 0 5 2 5 00 0 6 88 0000 8 00 6 7 7 5 7 2 7 7 7 99 2 2 99 4 4 4 0 6666 0 0 4 66666666 55 111111 4 1 5 0 4 99 666666 3 0 66666 4 4 4 22222222222222 0 55 0 0000000 5555 8 55 0 2 11 11 00000000000000000 555555 6 6 6 6 0 0 0 00000 0 0 000 3 4444444 4 5 9 1111 2 1 8
consensus : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GG--TTTAAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( family-3448 ) : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GG--TTTAAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|1 : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACAAAA-CAT-CTAAAGAACTTCATGAAA-ATAA----CA-----CCCCTTCC-TGGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAA--CTATCAAAAA-TATAAGATGTGTAT-TGCATGCA-----ATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACA-GGACAA-TTTAAA--TTCTATA-GCTTAGAACATACACAA-AGTTTTTAAATG---GTTTTTCAAAATGTATGTGTTAGAATTA-TTG-CAGTATATA-AAGGAATTA---ATGATTGC--AGAGAAGAA-GG-CTTTGTGTTT-------A-TTATTATT----AG----------GCAGGAATTCCAAATAGT-CATG----AAA-TAAATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-GAT-CTTAAAAT-ATGATC-ATA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAATAAA----CGAAGAGT--GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAATGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGT---GGTTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCTTTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|10 : CTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCTCTTT-AATGAAT-------TACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTG
gi|11 : TTTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTTTAATGAAT-------TACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTACTTTA-----A-TC-GCA---ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-AAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAATG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGTAttat
gi|13 : ctaattgttttgtgacaaaCTGGTGCTGTGGGTGA-TGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACTA-GAAA---------TGTTAAAAGTAATAAAGTTCTGTAGAAT--GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGGCGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGT
gi|14 : GAGAATT--TTTGCAATTAATAA--GACTTATGATTGCACAGAA----CTTAGCAT--ATTCAGAAT--TTCATGTCTTAAA-TTAATCATTGAAACT-GGTAGATAC-GAAATATAC-TGCATTAT-CTT-GAAT---GTTC-ACA-TTGTAAGACTCTG-TGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGA
gi|15 : TTTACTTGTACAT-TATAGGCTT-----C-TTTT----TTCTTTC-TTT--CATTGTATGAT---T-ACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCTCTTT-AGTGAAT-------TACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTAC
gi|16 : AAAACAGAGTGTT-TTAAAGAAACAAG-TTCATACT-GCTCT--CAGGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACA-GG--AA-TGTATATGTTTTA-A-TCTTATAATCTGAATAA-AG--TGTAAAT--TCTTTTCTC-AAA-----GAG--AGAA
gi|17 : aTATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGT-T-----G-TCTTCA---AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|18 : TTGTGTGAT---T-ACAAT-GTATTGA---ACTATTCTTTG-AA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCTCTTT-AATGAAT-------TGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|19 : ATGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAATATTTCT-T-T--CCTTGTGTGA----TTACAATAGTAT-GG---G-TATTC
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAAACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTGT-GTTCTTGAACATTTCCCAAATATAAACTCT-TC-AAAATTG-AAGA-GTGGTTCTGAAAACA-----CT-TTCAAGAAACAAGATTCATACTGGCCCT--TAGGTCAT----TATGCTGTGACTCATT-GGTTGATAATAGATA-GG-CAATTTTAAA--TTCTA-AGGCTTAGAAATTACACAAGGG--TTTAAATATTTTTTTTTCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAATTATTTTTCAATTTATAAAGAA-TTATGAGTGTAGAAGAAAAGTTTAGCAGGATTTCAGAAT--T-CATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATAATACTTAGAATAATGTTCAGCATTTGTAA---TCTGGTGC-GTTGGTGA-TGTAATGAATTTTCTATTTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCGGTGTTAGATGT-AT-AA----CGAAGAGTCGGGTCT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAATGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAAATATTTC-TTT--CCTTGTGTGA-----TACAATAG--T-GG---G-TATTCTT-G-AATTGTCAACTTTTGGTAC-----
gi|20 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagTCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG----------TTTA--TGTACA---GAGGGTCT
gi|20 : taGTA-TTATATACAGATATAA-TTCTTTCA--TATACATGTCAAGGTTTTCAATC-acgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|21 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctac-----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATGT
gi|21 : -TATGCCATT----AGGACCCCAATATTTG-CAATAAACTAATCTGAATCTgaatttgtatgccattaggaccccaatatttgcaataaactaatctgaatct
gi|22 : ctgtatgttcctttgcacctttcttagtattcattagttgctgattaattatgtgaatttgTT-GT-ACTT-ATACATG-TC-TTATACATACT-----T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|23 : TATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AAT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|25 : ATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTt
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGT
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
gi|29 : AGAATTATACCTGCA-CAT-CTTAGAAT-ATGTTT-GCA-TTGTAG--TTCTGGTt
gi|3 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CTCCTT-CTTGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTCAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGG-CAA-TTTAAA--TTCTA-A-GCTTAGAATATACACAA-GG--TTTAAATA-TTTTTTTTC-AAA-----GAG--catgt
gi|30 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcTTTCAGTCGAC-TACTAGATTGGGAC-A---------TGG-TT-AATG--AATAATGAAAACCCAAGA
gi|4 : TGTTAAATGTCACTAA----CAAAA-----GTT---ATTTCAG-CGAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTGAAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTTCTTTGA--TATAC-TGTGAAGGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTGA----TTACAAAAGTAT-CA---A-TATTCTT-GAAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCTTTTT-AGTG-AT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|5 : ATGG-TTTAATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATATAA-TT--TTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTGAT---T-ACAAAAGTAT-GATTCA-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-ACTT-A-----A-TC-ACA---ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTGat
gi|6 : ATCAACTTTTGGATATTTTTT-AGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATACAA-TAT-CTAAGGAACTTCTTGGAC-AT
gi|7 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcTTTTTTA--AATACATGTGAATGTTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTGAT---T-ACATAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCTCTTT-AGTGAAT-------TGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-ACTT-A-----A-TC-GCA---ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAAca
gi|8 : TTTTTTG--TATACATATTAAGGTTTTCAAGG-GTGTGT---TTTTTT-TGT----TTGTTTTTT---TT------TTAT-TA---T-TATTC------G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT----CTCT----ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G-------A-----A-T------------TTG---T---AT-----------------GCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|9 : TAT-GA---A-TATTTTT-G-AA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT-AAAGAAA-------TACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-ACTT-A-----ATTT-GCA---ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA
Alignments
lowQualScore : 11 1111 11 222222 1 1 11 44444444444 1 1 1111 1 22222222 1 11 11 2222 1 1 11 1 11 111 1 11 2222 1 22222 11 1 1 1 222 11 3333 333333333 6666666666666 2222 33 1 1 11 1 11 1 1 222 1 1 1 11 1111 11 1111 22222222 111111 222222 11111111111111 1111111 22222222222222222 111111 11111 1111111
lowQualScore : 0 3 2 1 8 5 11 8 7777 88 11 333333 1 1 0 0 00 22222222222 999 2 6 7 3 3333 3 6 66666666 1 0 33 33 1111 0 2 0 22 0 33 111 22 0 33 1111 5 55555 33 5 5 1 5 22 111 1 1 88 1111 000000000 5555555555555 6 2222 44 3 3 7 3 8 66 0 3 33 0 0 000 55 0 0 0 8 5 3 2 77 1 5 99 7777 0 11 5 1 6 3 6 3 6 5 5 77 2 6 77 1 3 1 5 0000 5 5 0 22222222 55 111111 4 0 0 5 5 66 111111 2 4 77777 4 4 4 55555555555555 4 99 4 3333333 8888 0 55 4 0 66 66 88888888888888888 000000 3 3 3 3 4 4 4 00000 4 4 777 1 1111111 0 6 2 6666 0 3 0
lowQualScore : . . . . . . .. . .... .. .. ...... . . . . .. ........... ... . . . . .... . . ........ . . .. .. .... . . . .. . .. ... .. . .. .... . ..... .. . . . . .. ... . . .. .... ......... ............. . .... .. . . . . . .. . . .. . . ... .. . . . . . . . .. . . .. .... . .. . . . . . . . . . .. . . .. . . . . .... . . . ........ .. ...... . . . . . .. ...... . . ..... . . . .............. . .. . ....... .... . .. . . .. .. ................. ...... . . . . . . . ..... . . ... . ....... . . . .... . . .
lowQualScore : 2 2 5 0 0 6 00 0 0000 88 00 000000 2 0 0 0 22 77777777777 333 0 7 3 3 7777 3 7 22222222 0 0 22 88 2222 0 5 0 55 0 88 000 22 0 88 0000 5 00000 88 5 5 0 0 00 555 0 0 00 7777 777777777 3333333333333 7 7777 00 3 3 3 2 8 55 0 2 22 0 0 222 88 0 2 0 0 5 2 5 00 0 6 88 0000 8 00 6 7 7 5 7 2 7 7 7 99 2 2 99 4 4 4 0 6666 0 0 4 66666666 55 111111 4 1 5 0 4 99 666666 3 0 66666 4 4 4 22222222222222 0 55 0 0000000 5555 8 55 0 2 11 11 00000000000000000 555555 6 6 6 6 0 0 0 00000 0 0 000 3 4444444 4 5 9 1111 2 1 8
consensus : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GG--TTTAAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( family-3448 ) : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GG--TTTAAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|1 : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACAAAA-CAT-CTAAAGAACTTCATGAAA-ATAA----CA-----CCCCTTCC-TGGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAA--CTATCAAAAA-TATAAGATGTGTAT-TGCATGCA-----ATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACA-GGACAA-TTTAAA--TTCTATA-GCTTAGAACATACACAA-AGTTTTTAAATG---GTTTTTCAAAATGTATGTGTTAGAATTA-TTG-CAGTATATA-AAGGAATTA---ATGATTGC--AGAGAAGAA-GG-CTTTGTGTTT-------A-TTATTATT----AG----------GCAGGAATTCCAAATAGT-CATG----AAA-TAAATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-GAT-CTTAAAAT-ATGATC-ATA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAATAAA----CGAAGAGT--GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAATGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGT---GGTTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCTTTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|10 : CTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCTCTTT-AATGAAT-------TACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTG
gi|11 : TTTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTTTAATGAAT-------TACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTACTTTA-----A-TC-GCA---ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-AAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAATG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGTAttat
gi|13 : ctaattgttttgtgacaaaCTGGTGCTGTGGGTGA-TGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACTA-GAAA---------TGTTAAAAGTAATAAAGTTCTGTAGAAT--GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGGCGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGT
gi|14 : GAGAATT--TTTGCAATTAATAA--GACTTATGATTGCACAGAA----CTTAGCAT--ATTCAGAAT--TTCATGTCTTAAA-TTAATCATTGAAACT-GGTAGATAC-GAAATATAC-TGCATTAT-CTT-GAAT---GTTC-ACA-TTGTAAGACTCTG-TGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGA
gi|15 : TTTACTTGTACAT-TATAGGCTT-----C-TTTT----TTCTTTC-TTT--CATTGTATGAT---T-ACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCTCTTT-AGTGAAT-------TACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTAC
gi|16 : AAAACAGAGTGTT-TTAAAGAAACAAG-TTCATACT-GCTCT--CAGGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACA-GG--AA-TGTATATGTTTTA-A-TCTTATAATCTGAATAA-AG--TGTAAAT--TCTTTTCTC-AAA-----GAG--AGAA
gi|17 : aTATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGT-T-----G-TCTTCA---AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|18 : TTGTGTGAT---T-ACAAT-GTATTGA---ACTATTCTTTG-AA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCTCTTT-AATGAAT-------TGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|19 : ATGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAATATTTCT-T-T--CCTTGTGTGA----TTACAATAGTAT-GG---G-TATTC
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAAACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTGT-GTTCTTGAACATTTCCCAAATATAAACTCT-TC-AAAATTG-AAGA-GTGGTTCTGAAAACA-----CT-TTCAAGAAACAAGATTCATACTGGCCCT--TAGGTCAT----TATGCTGTGACTCATT-GGTTGATAATAGATA-GG-CAATTTTAAA--TTCTA-AGGCTTAGAAATTACACAAGGG--TTTAAATATTTTTTTTTCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAATTATTTTTCAATTTATAAAGAA-TTATGAGTGTAGAAGAAAAGTTTAGCAGGATTTCAGAAT--T-CATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATAATACTTAGAATAATGTTCAGCATTTGTAA---TCTGGTGC-GTTGGTGA-TGTAATGAATTTTCTATTTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCGGTGTTAGATGT-AT-AA----CGAAGAGTCGGGTCT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAATGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATA-----------------------------TTTCAATT-CTTTGTAAATATTTC-TTT--CCTTGTGTGA-----TACAATAG--T-GG---G-TATTCTT-G-AATTGTCAACTTTTGGTAC-----
gi|20 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagTCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG----------TTTA--TGTACA---GAGGGTCT
gi|20 : taGTA-TTATATACAGATATAA-TTCTTTCA--TATACATGTCAAGGTTTTCAATC-acgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|21 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctac-----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATGT
gi|21 : -TATGCCATT----AGGACCCCAATATTTG-CAATAAACTAATCTGAATCTgaatttgtatgccattaggaccccaatatttgcaataaactaatctgaatct
gi|22 : ctgtatgttcctttgcacctttcttagtattcattagttgctgattaattatgtgaatttgTT-GT-ACTT-ATACATG-TC-TTATACATACT-----T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|23 : TATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AAT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|25 : ATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTt
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGT
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
gi|29 : AGAATTATACCTGCA-CAT-CTTAGAAT-ATGTTT-GCA-TTGTAG--TTCTGGTt
gi|3 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CTCCTT-CTTGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTCAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGG-CAA-TTTAAA--TTCTA-A-GCTTAGAATATACACAA-GG--TTTAAATA-TTTTTTTTC-AAA-----GAG--catgt
gi|30 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcTTTCAGTCGAC-TACTAGATTGGGAC-A---------TGG-TT-AATG--AATAATGAAAACCCAAGA
gi|4 : TGTTAAATGTCACTAA----CAAAA-----GTT---ATTTCAG-CGAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTGAAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTTCTTTGA--TATAC-TGTGAAGGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTGA----TTACAAAAGTAT-CA---A-TATTCTT-GAAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCTTTTT-AGTG-AT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|5 : ATGG-TTTAATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATATAA-TT--TTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTGAT---T-ACAAAAGTAT-GATTCA-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-ACTT-A-----A-TC-ACA---ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTGat
gi|6 : ATCAACTTTTGGATATTTTTT-AGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATACAA-TAT-CTAAGGAACTTCTTGGAC-AT
gi|7 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcTTTTTTA--AATACATGTGAATGTTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTGAT---T-ACATAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCTCTTT-AGTGAAT-------TGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-ACTT-A-----A-TC-GCA---ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAAca
gi|8 : TTTTTTG--TATACATATTAAGGTTTTCAAGG-GTGTGT---TTTTTT-TGT----TTGTTTTTT---TT------TTAT-TA---T-TATTC------G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT----CTCT----ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G-------A-----A-T------------TTG---T---AT-----------------GCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|9 : TAT-GA---A-TATTTTT-G-AA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT-AAAGAAA-------TACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-ACTT-A-----ATTT-GCA---ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTGt
blockSeqs : A C A G T AG T ATTT CA AT ACATGC T T A T GG ACCCCAACCTT CTT T C A . TTG . C GAGTGTT A A TG . TACA G G G C T TG AG TC G . ATTT A . . T T T C TT AAT T T CA TTAT ATAAAGAA GTAGAAGAAAAGT G TT TC T . A A A TT A A AA A T GAC TG A T G T T G GG A A TA GTTC CG A T T A A A A T T AA A C TC G A C T TGCG T T TAATTTCT CT ATGTCA G C T TT TTT A T TTCA T A T ATGTATGTC C GT T ACTTATT TTCC TG T AT TT NNNNNNNNNNNNNNNNN ATCTAG T G A T G T T TACAT T T TAC T CAGT A A TAAT A
blockSeqs : A C A . T . . . A . . T T . . G CA CT . C . . TA . C CT C . T . . . G . C . . A AT . . ATT . . . TT ATAAGAC GCACAGAAC . T TA . . A A C TA . A A . . T T . . . . T G A A A CT . . A T . T . A . . . . A A . A T C . . . . TAATTCT . ATGTGA . . T . TT T . AC . . . AGTACG . T . . . . . . . . . G . . . . . . . . . . T CAGT A . . .
blockSeqs : A . C . G . . . A . . A A . . C CT C . T . . . . . . . . A TA . . TC . . . . . C . . . . . . G . . . . . . . T C A . . . T . A . A . . . . A A . A T C . . . . TAATT . ATGTGA . . C . TT T . A . . . G . . . . . . . . . . . C . . . . . . . . . . C TCCC G . . .
blockSeqs : . . . . . . . . . T . T . . . T . A . . . . . . A A . A C T . . . . . . ATATTA . . T . TT T . G . . . G . . . . . . . . . . . G . . . . . . . . . . T TAC G . . .
blockSeqs : . . . . . . . . . G A . A C C . . . . . . ATTAT . . C . TT A . G . . . G . . . . . . . . . . . G . . . . . . . . . . T T G . . .
blockSeqs : . . . A . . G C . . . . . . . TGTGA . . G . TT A . A . . . G . . . . . . . . . . . G . . . . . . . . . . T T G . . .
blockSeqs : . . . . . . . . . AGA . . . . TT A . A . . . G . . . . . . . . . . . C . . . . . . . . . . T T A . . .
blockSeqs : . . . T . . T . . . G . . . . . . . . . . . G . . . . . . . . . . T T A . . .
blockSeqs : . . . A G . . . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . T . . . .
blockSeqs : T . . . .
blockSeqs : T . . . .
blockSeqs : . .
blockSeqCons : T* TAATTT** ATGTGA TT****
originalCons : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GG--TTTAAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAATAAA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAA-TTCTTTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGAT---TTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
finalCons : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAA-TA-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACT-GCCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAA-TTTAAA--TTCTA-A-GCTTAGAATNTACACAA-GG--TTTAAATA-TTTTTTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAAT-AA----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTT--TTTA--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTGATT----ACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA
Alignments
lowQualScore : 11 1111 11 222222 1 1 11 44444444444 1 1 222 1 22222222 1 1 11 2222 1 1 11 1 11 1 1 22 111 1 1 22222 11 1 1 1 222 11 3333 333333333 6666666666666 2222 33 1 1 11 1 11 1 1 222 1 1 1 11 111 22222 11 1111 111111111111111 111111 11111111111111 1111111 22222222222222222 111111 11111 1111111
lowQualScore : 0 3 2 1 8 5 11 8 7777 88 11 333333 1 1 0 0 00 22222222222 999 2 6 7 3 222 3 6 66666666 1 0 3 0 33 1111 0 2 0 22 0 33 0 0 22 33 111 0 5 55555 33 5 5 1 5 22 111 1 1 88 1111 000000000 5555555555555 6 2222 44 3 3 7 3 8 66 0 3 33 0 0 000 55 0 0 0 8 5 3 2 77 1 5 222 00000 0 11 5 1 6 3 6 3 6 5 5 77 2 6 77 1 3 1 5 0000 5 5 0 666666666666666 111111 4 0 0 5 5 66 9999 2 4 77777 4 4 4 55555555555555 4 99 4 3333333 8888 0 55 4 0 66 66 88888888888888888 000000 3 3 3 3 4 4 4 00000 4 4 777 1 1111111 0 6 2 6666 0 3 0
lowQualScore : . . . . . . .. . .... .. .. ...... . . . . .. ........... ... . . . . ... . . ........ . . . . .. .... . . . .. . .. . . .. .. ... . . ..... .. . . . . .. ... . . .. .... ......... ............. . .... .. . . . . . .. . . .. . . ... .. . . . . . . . .. . . ... ..... . .. . . . . . . . . . .. . . .. . . . . .... . . . ............... ...... . . . . . .. .... . . ..... . . . .............. . .. . ....... .... . .. . . .. .. ................. ...... . . . . . . . ..... . . ... . ....... . . . .... . . .
lowQualScore : 2 2 5 0 0 6 00 0 0000 88 00 000000 2 0 0 0 22 77777777777 333 0 7 3 3 777 3 7 22222222 0 0 2 0 88 2222 0 5 0 55 0 88 0 0 22 88 000 0 5 00000 88 5 5 0 0 00 555 0 0 00 7777 777777777 3333333333333 7 7777 00 3 3 3 2 8 55 0 2 22 0 0 222 88 0 2 0 0 5 2 5 00 0 6 222 00000 8 00 6 7 7 5 7 2 7 7 7 99 2 2 99 4 4 4 0 6666 0 0 4 777777777777777 111111 4 1 5 0 4 99 4444 3 0 66666 4 4 4 22222222222222 0 55 0 0000000 5555 8 55 0 2 11 11 00000000000000000 555555 6 6 6 6 0 0 0 00000 0 0 000 3 4444444 4 5 9 1111 2 1 8
consensus : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAAT-A-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAATTT-AAA--TTCTA-AG-CTTAGAATNTACACAAGG--TTTAAATATTTT-TTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAA-T-AA-----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATT-TTTT--A--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTG----ATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
Reference ( family-3448 ) : ATGAACTTTTGGAGATTTTTCCAGAANTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATGTTAAGTGCATNCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CCCCTTCCTTGGTTTAGCTCTATAAATGCCGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAAT-A-AAGA-GTGTATCTGAAAACA-----CT-TTNAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGACA-GG-CAATTT-AAA--TTCTA-AG-CTTAGAATNTACACAAGG--TTTAAATATTTT-TTTTCAAAA-----GAG--AGAATCATTTGTCANTATACACAAGGNNTTAAATATGNTTNCCAAGAGGAGAATTG-TTTTCAATTTATAA--GA-TTATGATTGCA-AGGA----CTTAGCAGGAATTCAGAAT--T-CATGT-TTAAA-TTAATCATTGAAACT-GGTAGATACAGAAATATACCTGCATNAT-CTTAGAAT-ATGTTC-GCA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCGGTGTTAGANGTAA-T-AA-----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATT-TTTT--A--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTT-TCT--CCTTGTGTG----ATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|1 : ATAAACTTTTGGAG-TTTTTTCAGAACTTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATGCTGAA--TTA-TTGG----TATCGGCTAGAAAAC-ATAGAA--CCTTTTAATAACAT------AATATCAAGTGCATACAAAA-CAT-CTAAAGAACTTCATGAAA-ATAA----CA-----CCCCTTCC-TGGTTTAGCTCGATAAATGCCATTCTTGAACATTTCCCAAATATAAA--CTATCAAAAAT-ATAAGATGTGTAT-TGCATGCA-----ATGTGAAAGAAACAAG-TTCATAT---CCCTTATAGATCAT----TATACT-CGACTCATTGGGTTGAAAATAGACA-GGACAATTT-AAA--TTCTATAG-CTTAGAACATACACAAAGTTTTTAAATG--GT-TTTTCAAAATGTATGTGTTAGAATTA-TTG-CAGTATATA-AAGGAATTA---ATGATTGC--AGAGAAGAA-GG-CTTTGTGTTT-------A-TTATTATT----AG----------GCAGGAATTCCAAATAGT-CATG----AAA-TAAATCATTGAAACTAGGTAG-TACAGAAATATACCTGCG-GAT-CTTAAAAT-ATGATC-ATA-TTGTAA--CTCTGGTGCTGTGGGTGA-TGAAATGCATTTTCTA-TTGTTTT-GTGACAAATTTCACTGTGAAAGACAGGCAATGTTAGAGGTAA-TAAA-----CGAAGAGT--GTGCTAATTTCAGCCGAC-TACTAGATTGGGAC-AAATTT-ATATGG-TT-AATG--GATAATGTAAACCCGAGAATCCT--CTCATCTGTTTCCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATTCTTTT--A--TATACATGT---GGTTTTCAATC-CTTTGCAATTTTTTT-TCT--CCTTGTGTGATATATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAATCTATAT--ACCTTTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATGTT-GT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATACATGTCTGATAC-TATGCCCTT----AGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|10 : CTTTTGGTAC-----G--------A-GGCGAAATAAATCCATAT--GCCTCTTT-AATGAAT-------TACGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTATTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCTTCC-GT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GT-ACTT-A-----A-TC-GCA---ATACTTACAGT---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATCTGT-TCTG
gi|11 : TTTGGTAC-----G--------A-GGCG--ATAA-TCCATATT-GCCTCTTTTAATGAAT-------TACGA----ATGAA--GAAGGTGTA-GTA---AC-TGAA-ATTAATATTATTAA-AATATTTGTA--TATTTATG--A------------------TATATGTTCCCT------A-GCAT--TCCGTT-TGCTAT-CTTTAATTGCTGATCAATCATGTT-GTTACTTTA-----A-TC-GCA---ATACTTACAGT---ATAC-TGTCTAATAC-T-TGCCCTT----AGGGGCCCATTATTTGATACTAAAAT-ATTTGT-TCTG
gi|12 : TTT-GTGACAAATTTCACTGTGAAAGACAGGCA-TGTTTGAAGTAA-A-AA-----CGAAGAGT--GTTCTAATTTCAGTCGAC-TACTAGATTGGGAA-AAATTTAATATGG-TT-AATGAAAATAATG-AAACCCAAG-ATCCT--CTTGT-TGTTTCCAAATTTTATAA----ACTTGTA-TTGTG-ACTAATGTAttat
gi|13 : ctaattgttttgtgacaaaCTGGTGCTGTGGGTGA-TGAAATGTATTTTCTA-TTGTGTT-GTGACAAG----ACTA-GAAA---------TGTTAAAAGTAA-T-AAAGTTCTGTAGAAT--GTTCTAATTTCAGTTGTC-TGGTTGACTTTGAC-AAATTC-ATATGG-TT-AATG--ACTGGCGAAAAACCAAGCATTCT--CACATAT------AAA-TTGGTAATGCGACTTGT
gi|14 : GAGAATT--TTTGCAATTAATAA--GACTTATGATTGCACAGAA----CTTAGCAT--ATTCAGAAT--TTCATGTCTTAAA-TTAATCATTGAAACT-GGTAGATAC-GAAATATAC-TGCATTAT-CTT-GAAT---GTTC-ACA-TTGTAAGACTCTG-TGCT-TGGGTGAATGAAATGCATTTTCTA-TTGTTTTGGTGA
gi|15 : TTT--ACTTGTACAT-TATAGGCTT-----C-TTTT----TTCTTTC-TTT--CATTGTATG----ATTACAAAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTATGGTAC-----G--------A-GGCGGAACAAATCCATTT--ACCTCTTT-AGTGAAT-------TACGA----ATGAATGAAAGGTGTA--TA--TACATGAA-CATAATATTAC
gi|16 : AAAACAGAGTGTT-TTAAAGAAACAAG-TTCATACTG-CTCT--CAGGTCATTACATATACA-TGAACTATTGGGTTTATCCCAGACA-GG--AATGT-ATATGTTTTA-AT-CTTATAATCTGAATAAAG--TGTAAAT-TCTT-TTCTC-AAA-----GAG--AGAA
gi|17 : aTATGTTCCGT------ATACATCGTCC-CT-TGATAC-TTTGAATAGCTGAATAACTATGTT-GC-ACGT-T-----G-TCTTCA---AT-TTCA---TCCCATGCATATTT-ATGCATATAC-------------CCCATCATTTGAC-ATAAACT-ATCTGTATTTG
gi|18 : TTGTGTG----ATTACAAT-GTATTGA---ACTATTCTTTG-AA-AGTGAACTTTTGGTAC-----G--------A-GGCGGAACAAATCCACAT--ATCTCTTT-AATGAAT-------TGTTC----ATGAATGAAAGGTGTATGTATGTACATAAA-GATA
gi|19 : ATGAAATTCCAAGAATCCT--CTCATTTGTTTCCAAA-TTTATAA----ACTTGTATTTATG-ACTAATA------------------------------TTTCAATT-CTTTGTAATATTTCT-T-T--CCTTGTGTG----ATTACAATAGTAT-GG---G-TATTC
gi|2 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATGGACTGACAACATTT--AGCAGTATTCTGAGAGTTA-TTAGATTTTATCAGCTAGAAAACCATAGAAATCCTTTTGATAACAT------AATGTTAAGTGCATTCACAAACATTCTAAAGAACTTCATGAAGGATAAACCCCAACCTTTCCCTTCTTTGTTTTAGCTCTATAAGTGT-GTTCTTGAACATTTCCCAAATATAAACTCT-TC-AAAATTG-AAGA-GTGGTTCTGAAAACA-----CT-TTCAAGAAACAAGATTCATACTGGCCCT--TAGGTCAT----TATGCTGTGACTCATTGG-TTGATAATAGATA-GG-CAATTTTAAA--TTCTA-AGGCTTAGAAATTACACAAGGG-TTTAAATATTTTTTTTTCAAGA-----GAG--AGAATCATTTGTCATTATACACAAAGTTTTAAATATGTTTTTCAAAAGGAGAATTATTTTTCAATTTATAAAGAA-TTATGAGTGTAGAAGAAAAGTTTAGCAGGATTTCAGAAT--T-CATGTATTAAATTTAATCATTGAAACT-GGTAGATACAGAAATATACATGCATAATACTTAGAATAATGTTCAGCATTTGTAA---TCTGGTGC-GTTGGTGA-TGTAATGAATTTTCTATTTGTTTT-GTGACAAA-TTCACTGTGAAAGACAGGCGGTGTTAGATGT-A-T-AA-----CGAAGAGTCGGGTCT--TTTCAGTCGACTTACT-GATTGGGACAAAATTT-ATATGGTTT-AATG--AACAATGAAATTCCAAG-ATCCT--CTCATTTGTTT-CAAA-TTTATAA----ACTTGTT-TTATG-ACTAATA------------------------------TTTCAATT-CTTTGTAAATATTTC-TTT--CCTTGTGTG----A-TACAATAG--T-GG---G-TATTCTT-G-AATTGTCAACTTTTGGTAC-----
gi|20 : aaaatacaatcaatattctaaaaacattaataaggtgaaaaattacacatactaagttttgcagacaaatattggggtatttataacgaagagTCTGTTTCCAAA-TTTATAA----ACTTGTA-GTGTG-ACTAG---------TTT--A--TGTACA---GAGGGTCT
gi|20 : taGTA-TTATATACAGATATAATT-CTTTC-A--TATACATGTCAAGGTTTTCAATC-acgtattatatacagatataattctttcatatacatgtcaaggttttcaatc
gi|21 : tatctgtttccaaatttataaacttgtagtgtgactagtttatgtacagagggtctac-----------------CTGTATGTTCCTT-------TGCACC-TTT-CT-TAGTATTCATTAGTTGCTGATTAATTATGT
gi|21 : -TATGCCATT----AGGACCCCAATATTTG-CAATAAACTAATCTGAATCTgaatttgtatgccattaggaccccaatatttgcaataaactaatctgaatct
gi|22 : ctgtatgttcctttgcacctttcttagtattcattagttgctgattaattatgtgaatttgTT-GT-ACTT-ATACATG-TC-TTATACATACT-----T---ATACATGTCTGATAC-TATGCCCTT----AGGGGTCCATTATTTGGCAATAAAAT-ATATGT
gi|23 : TATCCT-ACAACATTTTAAGCAGTATGCTGAT--TTA-TTGG----TATAGGCTAGAAAAC-ATATAA--CCTTTTAATAATAT------AAT
gi|24 : ACTTA---T---ATACATGTCTGATAC-TATGCCCTTTAATAGGGGCCCATTATTTGGCAATAAAAT-ATCTGTATCTG
gi|25 : ATATTGCTAATAATATTTGTA--TATCTATG--A-----------------CTA---ATTCCCTATCTAGATGC-TCCACC-CC-TGGTAT-TTTTt
gi|27 : ---T---ATATATGACTGATAA-TATGCCCTT----ATGGGCC-ATTATTTGGCAATAAAAT-ATCTGT
gi|28 : t---T---ATACATGTCT-------ATGCCCCT----AGGGGCCCATTATTTGGTAAATAACT-ATCTGTATCTG
gi|29 : AGAATTATACCTGCA-CAT-CTTAGAAT-ATGTTT-GCA-TTGTAG--TTCTGGTt
gi|3 : ATGAACTTTTGGAGATTTTTCCAGAAATTGGTAGATTTCCTATATCCT-ACAACATTTTAAGCAGTATTCTGAA--TTA-TTGA----TATCAGCTAGAAAAC-ATAGAA--CCTTTTGATAACAT------AATGTTAAGTGCATTCACAA-CAT-CTAAAGAACTTCATGAAG-ATAA----CA-----CTCCTT-CTTGGTTTAGCTCTATAAATGCTGTTCTTGAACATTTCCCAAATATAAACTCTATC-AAAAT-A-AAGA-GTGTATCTGAAAACA-----CT-TTCAAGAAACAAG-TTCATACTG-CCCT--TAGGTCAT----TATGCT-TGACTCATTGGGTTGATAATAGATAGGG-CAATTT-AAA--TTCTA-AG-CTTAGAATATACACAAGG--TTTAAATATTTT-TTTTC-AAA-----GAG--catgt
gi|30 : tatggtagtaatatttggggatttttcaaaccattgtgagcaaagtttagaaaagataaaaaatacaatcaatattctaaaaaaattaaaatgtgaaaaattacacactaagttttgcagacaaatattgggtatttataagaaagcTTTCAGTCGAC-TACTAGATTGGGAC-A---------TGG-TT-AATG--AATAATGAAAACCCAAGA
gi|4 : TGTTAAATGTCACT-AA-----CAAAA-----GTT---ATTTCAG-CGAC-TACTAGATTGG-AC-AA-TTT-ATATGG-TT-AATG--AATAACTGAAACCCGAGAATCCCTCCTCATCTGTTTTCAAA-TTTATAA----ACTTGTA-TTGTG-ACTAATATAATT-TCTTTGA--TATAC-TGTGAAGGTTTTCATTCGCTTTGTAAAAATTTT-TCT--CCTTGTGTG----ATTACAAAAGTAT-CA---A-TATTCTT-GAAA-CGTCAACTCTTGGTAC-----G--------A-GGCGGAACAAACTTATAT--ACCTTTTT-AGTG-AT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAATAATAATATTATTAATAATATTTGTAATTATTTATATTA-----------------CTATATGTTCCAT------ATGC-TCGGTC-CTATGGTAT-CTTT-GTTGCTGATCAATTATGTTGGT-ACTT-A-----A-TT-GCA---ATACTTA---T---ATTAATGT-TGATAC-TATGGCCTT----AGGG--CCATTATTTGG-AATAAAAT-ATCTGTA
gi|5 : ATGG-TTTAATG--AATAATGAAAACCCAAGAATCCT--CTCGTCTATTTCC------TATAA----ACTTGTA-TTGTG-AC--ATATAATT-TTT---A--TATACATGTGAAGGTTTTCAATC-CTTTGTAATTTTTTTCTTT--CCATGTGTG----ATTACAAAAGTAT-GATTCA-TATTCTT-G-AA-CGTCAACTTTTGGTAC-----G--------A-GGCGGAATAAATCCATAT--ACCTCTTT-AGTGAAT-------TGCGA----ATGAATGAAAGGTGTATGTA--TACATGAA-AATAATATTACTACTAACATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGTATCGTCC-CT-TGGT---------------ATCGATTATGTT-GT-ACTT-A-----A-TC-ACA---ATACTTA---TAC-ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCATTGTTTGGCAATAAAAT-ATCTGTATCTGat
gi|6 : ATCAACTTTTGGATATTTTTT-AGAACTTGGTAGATTTCTTCTATCCT-ACAACATTTGAAGCAGTGTGCTGAA--TTATTTTG----CATCGATTAGAAAAC---AGAA--CCTTTTAGCAACATACATGCAATATAAAATGCCTATACAA-TAT-CTAAGGAACTTCTTGGAC-AT
gi|7 : ctttgaccacacagttactcctgtctttttatatggtagtgaaagttggggatttaaaaaaaaaaatccattctcaccaaagaagtgtaatcgatatcctgaatttgttttattaaaatgtgaaaaattgcgtactggattttgtagaaaactattgggagttcataagaaagcTT-TTTT--A--AATACATGTGAATGTTTTCAATC-CTTTGTAATTTTTTT-TCTTTCCTTGTGTG----ATTACATAAGTAT-GA---A-TATTCTT-G-AA-CGTCAACTTTTGGTACAGTACG--------A-GGCGGAACAAATCCATATGTACCTCTTT-AGTGAAT-------TGTGA----ATGAATGAAAGGTTTATGTA--TTCATGAA-AATAATATTACTAATAATATTTGTA--TATTTATG--A-----------------CTATATGTTCCCT------ATGCATCGTCC-CT-TGGTAT-CTTTAGTTGCTGATCAATTATATT-GT-ACTT-A-----A-TC-GCA---ATACT-----T---ATACATGTCTAATAC-TATGCCCTT----AGGGGCCCTTTATTTGGCAAca
gi|8 : TT-TTTT--G--TATACATATTAAGGTTTTCAAGG-GTGTGT---TTTTTT-TGT----TTGTTTT----TTTTT-----TAT-TA---T-TATTC------G-CGT------TTGTTAT-----G--------GCGGCGGAACAAATCTATAT----CTCT----ATGAATACTTATTTTC------ATGAATGAAAGGTGTATATA--NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNCTGTATGTTCCCT------TTGCACCCTTC-TT-TAGTAT-CATTAGTTGCTGATTAATTATGTT-G-------A-----A-T------------TTG---T---AT-----------------GCCATT----AGGGACCCAATATTTGGCAATAAACT-ATCTGAATCTG
gi|9 : TAT-GA---A-TATTTTT-G-AA-CCCCAACTTTTGGTAT-----ATGTATGTCA-GGTGAAAGAAATCTGT-C--AGCT-TTT-AAAGAAA-------TACACTTCCATACATATAAGGTGTATCTG--GATAT--A-AATA-----------------TG-A--TATTTATA--A-----------------CTGTGTGTTCCCT------GTGCATGGTTT-CT-TGGTAC-CTTTAGTTGCTCATCAATTATGTT-GT-ACTT-A-----ATTT-GCA---ATG--TA---T---ATGC----------------CCCTT-----GGGGCCTGTTATTTGGCAATTAACT-ATCTGt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): TATGGTAGTGAAATTTGGGGATTTTTCAATACATATTCAGCTAAGTTTAGAAAAGATAAAA