lowQualScore : 11111111111111
lowQualScore : 4 777 555 4 33 1 222222 1 4 4 33 2 1 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 44444444444444444444444444444 222 88888888888888888888888888888888888888888 22222222222 11 11111111111 1111 111111111111 11111 1 777777777777777777777777777777777777777777777777777777777777777 00000000000000
lowQualScore : 6 0 6 000 6 222 0 6 6 00 7 2 9 2 555555 1 4 0 0 11 2 0 6 5 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 5 0 3 3 5 2 00000000000000000000000000000 777 777 22222222222222222222222222222222222222222 77777777777 00 5 99999999999 4444 777777777777 1 1 44 55 11111 3 44 44 33 1 6 44 44 3 3 444444444444444444444444444444444444444444444444444444444444444 4 9999 888 66666666666666 6
lowQualScore : . . . ... . ... . . . .. . . . . ...... . . . . .. . . . . . . ............................................................................................................................... . . . . . . . ............................. ... ... ......................................... ........... .. . ........... .... ............ . . .. .. ..... . .. .. .. . . .. .. . . ............................................................... . .... ... .............. .
lowQualScore : 0 0 0 000 0 000 0 0 0 00 0 5 5 5 000000 5 0 0 0 00 5 0 0 0 0 8 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 0 2 4 0 2 99999999999999999999999999999 000 444 44444444444444444444444444444444444444444 11111111111 77 0 11111111111 9999 333333333333 3 4 00 00 88888 1 22 22 55 6 5 66 66 3 6 444444444444444444444444444444444444444444444444444444444444444 4 4444 888 00000000000000 0
consensus : NNNNNNNNNNNNNNNNNTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGAT-GGAAGACACTAAGCACTTTCCTAGAATGTCCTCTGTACAATNAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACNAACCTACTGCNCTTTGGGGACCCAAACCTATCAGTAATCTCAAAACAAATNTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTA--AG-A--GATT--------CAA--TTCCTGA-G------------TGTTA------TGTAT-C---GTAAT-GTTA---------------TT---TTTC--T----GT-AAT-----------ATGCG-A-AA-ATAATTCC-ATACGACCCATCACACATCAT-CA--------------------TCACC---CTTAATTGTAT----A----TGT---TTCA-GCA-TTTT-GTATTT---GT-ATTT-----------AT-TGT-ACTTA----A-----AATTCCATAGCTTA---AAGAAGATT--TATTAT-C-ATTATTAT-TAT--ATGT--N--ACATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTAT--TA--TAA---TGATGT-AT--TTG-TTTG--T-CGTAGCACTTGTTTC-A-A-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTT
Reference ( gi|1 ) : TATGTAAGTAAATTACTTTATTTTCTAAAAAACATTGTAGATACTCCTTTATGTGTATGTGGCAAGATAGAAAGACACCAACAACATTCCTAGAATGTCCTCTGTACAATCAACTTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACTAACCTACTGCTCTTTGGAGA-CCAAAC-TATCAGTAATCTCAAAACAAATCTAT-TTTCAATCGGTACATAACTATA-TCAAGCAAAGTA--AG-A--GATT--------CAA--T-CCTGA-G------------TGTTA------TGTAT-T---GTAAT-GTTA---------------TT---TTTC--T----GT-AAT-----------A-GCG-A-AA-ATAATTTC-ATACGACCTATCACA-ATCAT-CA--------------------TCACCA--CTTAATTGTAT----A----TGT---T-CA-GC--TTTT-AT---T---GT-ATTT-----------AT-TGT-ACTCA----A-----AATTCCATAGCTTA---AAGAAGATT--TATTAT-T-ATTATTAT-TAT--ATGT--T--ACATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGAAC--TTGTT--TC-TGAA-TCCTAT--TA--TAA---TGATGT-ATG-TTG-TTTG--T-CGTAATACTTGTTTCAA-A-AG-TC-A-ATAA-A----TACAGTTT---AAACCAAGTAAATTACCAG--TATTCT
gi|17 : TTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGAT-GGAAGACACTAAGCACTTNCCTA
gi|14 : TTCCTAGAATGTCCTCTGTACAATAAAATTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACCAACCTACTGCTCTTTGGAGACCCAAACTTATCAGT-ATCTCAAAACAAATCTA
gi|3 : ctatTCTTAAAATGGTCATTGTACAATAAACTTTGACAAAAATATCTTTCAAATCTA--------------CACAAACCTACTGCACTTTGGGAATCCAAACCTATCAATA-TCTCAAAACAAATATATATTTCAATCAGTACATAAATATA-TAAAGCAAAGTACTAA-G--TATTATGTAACATAA--T-----A-G------------TACTAAAGACTTGCAT-T-------T-GTCC---------------TT---TTTTATT----GTCAGT-----------ATACGCA-AG-ATG----C-GAAAGACCCATCACACGTCAT-CA--------------------TCACC---CTT----GTAT----A------------------------AT---T------ACTT-----------AT--GT--TTC--------------TCCATAGCTT----------------------C-ATTATACG-TAC--ATGT--A--ACATAGGAGAT-GGATTT--ACAT--AAGTC-TTTTGTAC--TTGTC--TC-CGAA-TCCTAT--CA--TA
gi|16 : TAGAATGTCCTCTGTACAACCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAActaa
gi|18 : caaagagctgttaTAGAATGTCCTCTGTGCAATCAACTTCGGCGAAACTATCTTTCAAATCTAGCAAACAA
gi|2 : ca-TTTCAATCAGTACATAAATATA-TCAAGCAAAGTA--AG-A--GTTTT-------CAA--TTCCTGA-GTGTTATAAAACATGTTA------TTTTT-TTTGGTAATAGTTAGACTTGCAATCCATCCT---TTTC--TTATTGT-AATTTATACACAAGATGCG-AGAA-ATAATTCC-ATACGACCCATCACACATCAT-CA--------------------TCGCC---CTTATTTGTATTCTTA----TGT---TTCGCGC--TTTT-GTATTT---GT-AATT-----------ATCTGT-ACTTA----A-------TTCCATAGCTTC---AAGAAGATT--TATT-T-A-ATTATTAT-TAT--ATGC--A--ACATAGGAGAC-GGCTTTTGACAT--GA---------------CGTT--TC-CGAA-TCCTATCCTA--T--------CCT-ATC-TTG-TCAG--T-GGAAATAC-TGTT
gi|6 : ctctttaATCAGTACATTAATATACTCAAACAATG----------G--T--------CAAGTT-TCTGG-G------------TATCA------TGTAA-C---ATCAT-TTTA---------------TT---TTTC--T----TG-AAT-----------A-agttggaagtgcattcattatttccaggcaaagttattc
gi|5 : A-TCAAGCAAAGTA--AGTATTGACT-------------T-CCTGAGG------------TG-TA------TGTAA-C---ATAAT-GTTGT--------------TT---TTTC--T----AT-AAC-----------A-cttaagatctgtcattttctcattgttatttatacacaagatgcgaaagatgattccagacgacccattacacatcatcaccacccttaacacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|4 : AAGTA--AG-A--AATT--------CAA--TTCCTGA-G------------TGTTA------TGTAT-T---GTGAT-GTTA---------------TT---TTTC--T----GT-AAT-----------A-GCA-A-AC-ATAATTTC-ATACGACCTATCACACATCAT-CA--------------------TCACC---CTTAATTGTAT----A----TGT---TTCA-GCATTTTT-GTATTT---GT-ATTT-----------AT-TGT-ACTTA----A-----AATTCCATAGTTTA---AAGAAGATT--TATTAT---A--ATTAT-TAT--ACGT--T--ACATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTAT--TA--TAA---TGATGT-A---TTG-TTTGC-T-TGTAGTTCTTGTTTC-A-A-CG-TC-A-ATAA-A----TACAGTTT---AAACCAattagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaaaaataaatcctatacgacccatcaccatcacccttaattgtatacttatgtttcagcacttttgtttttgttattttttgttacttaaaatcccatagcttcaagaacattattattattactattattatatgtaatggatataggagacggattaacatgagtcttttgtacttctttc
gi|8 : A------TGTAT-T---AT--T-GTTA---------------TT---GTAC-------AC-AAG-----------ATGCG-A-AAGATAATTCC-CCACGACCCATCACACATCAT-CACTCTTGTATATACTTATGTTTCAGCA--CTT--TTGTAT----T----TGT--------AC--TTTT--T---T---GT-ATTTTTAAATGATAAAT-TGC-AAACACTGTATGTTTAATTCCATAGTTTC---AGGACGATT--CCTTAT-C-ACTATGAT------ATGT--A--ACACAGGAGAC-GGATTT--ACAC--TTGTC-TTT
gi|7 : gttatctttgccttttcatgatattatatttctgtaatac------TGTATAC---GTAAT--CCA---------------CTGAGTTTC--T----GT-AAT-----------A-GCG-A-AA-GTAATTTC-ATACGACCTATCACACATCAT-CA--------------------TCACC---CTTAATTGTAT----AAAT-TATCTTT-CA-GCATTTTT-GTATTT---GT-ATTT-----------AT-TGT-ACTTA----A-----AATTCCATAGCTTA---AAGAAGAT-----TTAT-T-ATTATTAT-CAT--ATGT--T--ACATAGGAGAC-AGATTT--ACAT--AAGTC--TTCGTAC--TTGTT--TC-TGAA-TCCTAT--TA--TAA---TGATGT-AT--TTT-TTAT--T-TGTAACACTTGTTTC-A-A-CG-TC-A-ATAA-A----TACAGTTT---AAtatatc
gi|6 : T-GTTA---------------TT---TATA--C----AC-AAG-----------ATGCG-A-AAGATGATTCC-AGACGACCCATTACA---CAT-CA--------------------TCACCACCCTTAAcc
gi|10 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaatacttaagatctgtcattttctcatCG-A-AA-ATA-TTCC-ATACGACTCATCACA---CATACA--------------------TCA-------TAA---TAT----A----TGT---T-cacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|5 : -A-AA-ATAAATCCTATACGACCCATCAC--------CA--------------------TCACC---CTTAATTGTAT----ACTTATGT---TTCA-GCACTTTT-GT---TTTTGTTATTT-----------TT-TGTTACTTA----A-----AATCCCATAGCTTC---AAGAACATTATTATTAT-T-ACTATTAT-TAT--ATGTAATGGATATAGGAGAC-GGATTA--ACAT--GAGTC-TTTTGTAC--TTCTT--TC-atataggagacagatttacataagtcttttgtacttgtttctgatccattttgttgtttcaacaacatataatatacagtttattatatgtacag
gi|6 : atcaagcaaagtaagtattgacttcctgaggtgtatgtaacataatgttgttttttctataacaattagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaA--CTTAA--G-AT----C----TGT-----CA-TT--TTCTCAT---T---GTTATTT-----------AT-----ACACA----A-----GATGCGAAAGATGATTCCAGACGACC--CATTACAC-ATCATCAC-CAC--CCTT--A--ACACAGGAGAC-AGATTT--ACAT--AAGTTATTTTGTAC--CTGTT--TC-CGAA-TCCTAT--CA--TTC---TAATATAATT-TTG-TTTG--T--ATTACAC-TATT----------------TGA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTT
gi|11 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaat-ACTTA----A-----AATTCCATAGCTTA---AAGAAGATC--------------ATTAT-TAT--ATGT--T--ACATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTAT--TA--TAA---TGATGT-A---TTG-TTTGT-T-TGTAGCACT--------------------TAA-A----TACAGTTT---AAA
gi|12 : GAAGATT--TATTAT-T-ATTAT---------ATGT--T--ACATAGGAGAC-ATATTT--ACATTTAAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTAT--TA--TAA---TGATGT-A---TTG-TTTGA-T-TGTAGTACTTGTTTC-A-A-CG-TC-A-ATAA-ATATGTACAGTTT---
gi|9 : ATTAT-TTATTACTGTATATCAATGT--C--ACATAGGAGACAGAATTT--GCAT--AAGTC-TGTCGTACGTCTGTTAATCTTGAAGTCCTGT--TAATTAAATTTGAGGT--CA-TCGCTTTG--TGTGTAGCACAGTTTTCAA-C-CGTTC-A-ATAA-G----AACAGTTT---
gi|10 : TAA-TAT--ATGT--T--ATATAGGAGAC-AGATTT--ACAT--AAGTC-TTTTGTAC--TTGTT--TC-TG-A-TCC-AT--T--------------------TTG-----------------TTGTTTCAACA-A---C-ATATAATA----TACAGTTT---Atacatcc
gi|13 : cgaaaatattccatacgactcatcacacatacatcaATAAGATAC-GGTTTA--ACAC--AAGTC-TTT-GCAC--TTGTT--TT-CGAG-TCCTAT--TG--CACT--TGAAGT-ATGTTTG-TATGCTT-CATGTCATTTG-TTCAA-ATAA-T----ATAA-A----TATAttatatgtacag
gi|15 : GGAGAC-GGACTT--ACAT--AAGTC--TTCGCAC--TAGTT--TC-CGAA-TTCTGT---------------TGC-ATG-TT--------T-CATGTGAATTATTC------AG-TTAA-ATGA-A----TATAGTTTTTAAAACCAAccaacatagaaaatcaatgtatattcaat
Alignments
lowQualScore : 2 333 2 2 1 11 222222 1111 33333333333333333333 11111111 1 1111 1111 33333333333333 11 1111111 333333333333333333333 1111 222222 11111111 222222 22222 1111111111 222222 11
lowQualScore : 0 000 0 0 55 1 3 4 1 1 0 6 2 44 1 7 8 333333 6 3 6 2222 22222222222222222222 4 777 00000000 2 5 5 66 5 6666 5 1111 7777 55555555555555 55 8888 44 8 4 4 4 4 66 4 55 0 2222222 444444444444444444444 2222 44 555555 0 4 6666 2 33 33 2 1 44 44 3 3 22222222 333333 55555 5 3 4 7777777777 4 8888 777 777777 88
lowQualScore : . ... . . .. . . . . . . . . .. . . . ...... . . . .... .................... . ... ........ . . . .. . .... . .... .... .............. .. .... .. . . . . . .. . .. . ....... ..................... .... .. ...... . . .... . .. .. . . .. .. . . ........ ...... ..... . . . .......... . .... ... ...... ..
lowQualScore : 0 000 0 0 00 0 2 0 0 0 7 7 0 77 0 3 0 888888 7 2 7 6666 55555555555555555555 0 000 77777777 0 0 0 99 0 5555 0 1111 5555 88888888888888 11 9999 11 9 4 4 4 9 22 0 55 9 2222222 000000000000000000000 5555 66 666666 8 0 1111 9 99 99 9 1 22 22 1 3 55555555 000000 33333 7 2 0 2222222222 0 5555 888 888888 55
consensus : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAANNACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGACGGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
Reference ( family-3446 ) : NNNNNNNNNNNNNNNNNTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGATGGAA-GACACTAAGCACTTTCCTAGAATGTCCTCTGTACAATNAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACNAACCTACTGCNCTTTGGGGACCCAAACCTATCAGTAATCTCAAAACAAATNTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAT-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGACGGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTT
gi|1 : TTATTTTCTAAAAAACATTGTAGATACTCCTTTATGTGTATGTGGCAAGATAGAAAGACACCAACAACATTCCTAGAATGTCCTCTGTACAATCAACTTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACTAACCTACTGCTCTTTGGAGACC-AAAC-TATCAGTAATCTCAAAACAAATCTAT-TTTCAATCGGTACATAACTATA-TCAAGCAAAGTAAGAG-ATTCAA-T-CCTGAGTGT-TATGTAT-TGTAAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCGA-AA-A--TAATTTC-ATACGACCTATCACA-AT-CATCATCACCACTTA---ATTGTA----TA-----TG-------TT--C---AGC--TTTT-AT----TGT-A-TTTAT-TGT-A--CTCA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-TAT-TATTATTATATGTTAC----ATAGGAGACGGA-TTT--ACAT--AAGTC-TTTCGAAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TGTTGTTTG--T-CGTAATACTTGTTTCAAA-AG-TC-A-ATAA-A----TACAGTTT---AAACCAAGTAAATTACCAG--TATTCT
gi|10 : tatgtaagtaaattactCGA-AA-A--TA-TTCC-ATACGACTCATCACACATACATCATAA-----TATATGTTATA----TA-----GGAGACAGATTTACATAAGTC-TTTT-GT-ACTTG----TTTCT-GAT-C--C-----------ATTTTG---------------------TTGTTTC---AACAACATA--TAATATACAG-T-TTATTATATGT-AC----A
gi|10 : -CAT-CATAAT-ATATGTTAT----ATAGGAGACAGA-TTT--ACAT--AAGTC-TTTTGTAC--TTGTT--TC-TG-A-TCC-AT--------------------T-TTG----------------TTGTTTC-AA-CA-AC-ATATAATA----TACAGTTT---Ag
gi|11 : cgaaaatattccatacgactcatcacacata-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATC--------------ATTATTATATGTTAC----ATAGGAGACAGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGT-T-TGTAGCACT-------------------TAA-A----TACAGTTT---AAAttatatgtacag
gi|12 : GAAGATT--TATTAT--------TATTATATGTTAC----ATAGGAGACATA-TTT--ACATTTAAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGA-T-TGTAGTACTTGTTTC-AA-CG-TC-A-ATAA-ATATGTACAGTTT---
gi|13 : ----ATAAGATACGGT-TTA--ACAC--AAGTC-TTT-GCAC--TTGTT--TT-CGAG-TCCTATTG--CACT--TGAAGT-ATGT-TTGTATGCTT-CATGTCATTTG-TTC-AA--A-TA-ATATAA-A----TATA
gi|14 : TTTCCTAGAATGTCCTCTGTACAATAAAATTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACCAACCTACTGCTCTTTGGAGACCCAAACTTATCAGT-ATCTCAAAACAAATCTAccaacatagaaaatcaatgtatattcaat
gi|15 : ctaGGAGACGGA-CTT--ACAT--AAGTC--TTCGCAC--TAGTT--TC-CGAA-TTCTGTTG--C-------ATGT----T-TCATGTG----------AATTA-TTC-A---G-TTAA-ATGA-A----TATAGTTTTTAAAACCAA--
gi|16 : tTAGAATGTCCTCTGTACAACCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAAttcaaccaaaaaa
gi|17 : caaagagctgttaTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGATGGAA-GACACTAAGCACTTNCCTA
gi|18 : TAGAATGTCCTCTGTGCAATCAACTTCGGCGAAACTATCTTTCAAATCTAGCAAACAA
gi|2 : caTATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAGTTTTCAA-TTCCTGAGTGT-TATAAAA-C---AT--------------------GTTA-TT---TTTT--TTGGT-AATA
gi|2 : ctcttT-CTTATT--------------------GTAA-TT---TATA--C--AC-AAGATGCGAGAA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCGCC-CTTA---TTTGTATTCTTA-----TG-------TTT-C----GCGCTTTT-GT-ATTTGT-A-ATTATCTGT-A--CTT--------AATTCCA---------------------TAGCTTC---AAGAAGATT--TATT-T-AAT-TATTATTATATGCAAC----ATAGGAGACGGC-TTTTGACAT--GA---------------CGTT--TC-CGAA-TCCTATgttagacttgcaatccatccttttcttattgtaatttatacacaagatgcgagaaataattccatacgacccatcacacatcatcatcgcccttatttgtattcttatgtttcgcgcttttgtatttgtaattatctgtacttaattccatagcttcaagaagatttatttaattattattatatgcaacataggagacggcttttgacatgacgtttccgaatcctatcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|3 : ctctttatttcaatcagtacataaatatatcaagcaaagtaagagttttcaattcctgagtgttataaaacatgttattttttttggtaatagttagacttgcaatccatcctttTCTTAAAATGGTCATTGTACAATAAACTTTGACAAAAATATCTTTCAAATCTA--------------CACAAACCTACTGCACTTTGGGAATCCAAACCTATCAATA-TCTCAAAACAAATATATATTTCAATCAGTACATAAATATA-TAAAGCAAAGTA---------------CTAAGTAT-TATGTAA-CATAATAGTACTAAAGACTTGCATTTGTCC-TT---TTTTATT--GTCAGTATACGC-AA-G----ATGCG-A-AAGACCCATCACACGT-CATCATCACC-CTT-------GTA----TA-------------------------A-TT------ACTTAT-G-TTT-----------------------CTCCA---------------------TAGCTT----------------------CAT-TATACGTACATGTAAC----ATAGGAGATGGA-TTT--ACAT--AAGTC-TTTTGTAC--TTGTC--TC-CGAA-TCCTATCA--TAcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|4 : AAGTAAGAA-ATTCAA-TTCCTGAGTGT-TATGTAT-TGTGAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCAA-AC-A--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGTTTA---AAGAAGATT--TATTAT--A---ATTATTATACGTTAC----ATAGGAGACAGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGC-T-TGTAGTTCTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCActaa
gi|5 : A-TCAAGCAAAGTAAG-T-ATTGAC-TTCCTGAG-GTGTATGTAA-CATAAT--------------------GTTGTTT---TTTC--T--AT-AACA
gi|5 : T--------------------GTAA-TT---TATA--C--AC-AAGATGCGA-AA-AAATAAATCCTATACGACCCATCAC--------CATCACC-CTTA---ATTGTA----TACTTA-TG-------TTT-C---AGCACTTTT-GT-TTTTGTTA-TTTTT-TGTTA--CTTA------AAATCCCA---------------------TAGCTTC---AAGAACATTATTATTAT-TAC-TATTATTATATGTAATGGATATAGGAGACGGA-TTA--ACAT--GAGTC-TTTTGTAC--TTCTT--TC-attagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaaaaataaatcctatacgacccatcaccatcacccttaattgtatacttatgtttcagcacttttgtttttgttattttttgttacttaaaatcccatagcttcaagaacattattattattactattattatatgtaatggatataggagacggattaacatgagtcttttgtacttctttc
gi|6 : atcaagcaaagtaagtattgacttcctgaggtgtatgtaacataatgttgttttttctataacaattagacttgcaacctatccttttctcatATCAGTACATTAATATACTCAAACAATG-----G---TCAAGTTTCTGGGTAT-CATGTAA-CATCAT--------------------TTTA-TT---TTTC--T--TG-AATA
gi|6 : CA-TTTT-CTCATTGTT-A-TTTAT-----A--CACA------AGATGCGA---------------------AAGATGATTCCAGACGACC--CATTACACAT-CATCACCACCCTTAAC----ACAGGAGACAGA-TTT--ACAT--AAGTTATTTTGTAC--CTGTT--TC-CGAA-TCCTATCA--TTC---TAATAT-AATT-TTGTTTG--T-ATTA-CAC-TATT---------------TGA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTTcttaagatctgtcattttctcattgttatttatacacaagatgcgaaagatgattccagacgacccattacacatcatcaccacccttaacacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|7 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaatacttaagatctgtTGTATACGTAAT---------------------CCA-CTGAGTTTC--T--GT-AATA-GCGA-AA-G--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TAAATTATC-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-----TATTATCATATGTTAC----ATAGGAGACAGA-TTT--ACAT--AAGTC-TT-CGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--T-TTTTTAT--T-TGTAACACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AA
gi|8 : ATGTAT---TATT--------------------GTTA-TT---GTAC-----AC-AAGATGCGA-AAGA--TAATTCC-CCACGACCCATCACA----CATCATCACT-CTTG---TATATACT--TA-----TG-------TTT-C---AGCACTTTT-GT-ATTTGT-ACTTTTT-TGT-ATTTTTAAATGATAAATTGCAAACACTGTATGTTTAATTCCATAGTTTC---AGGACGATT--CCTTAT-C----ACTATGATATGTAAC----ACAGGAGACGGA-TTT--ACAC--TTGTC-TTTTATAcc
gi|9 : gttatctttgccttttcatgatattatatttctgtaatacATT--TATTAC-TGTATATCA----ATGTCAC----ATAGGAGACAGAATTT--GCAT--AAGTC-TGTCGTACGTCTGTTAATCTTGAAGTCCTGTTAATTAAATTTGAGGTCA--T-CGCTTTG--TGTGTAGCACAGTTTTC-AACCGTTC-A-ATAA-G----AACAGTTT---tc
Alignments
lowQualScore : 1 111 1 1 1 11 222222 1111 33333333333333333333 11111111 1 1111 1111 333333333333333 11 1111111 333333333333333333333 1111 222222 11111111 222222 22222 1111111111 111111 11
lowQualScore : 5 999 5 5 22 3 3 1 2 6 44 7 8 333333 99 6 1111 22222222222222222222 4 777 00000000 2 5 5 66 5 6666 5 1111 7777 555555555555555 5 8888 44 9999 4 4 4 66 4 55 0 2222222 444444444444444444444 2222 44 555555 0 4 6666 2 33 33 2 1 44 44 3 3 22222222 333333 55555 5 3 4 7777777777 4 8888 777 888888 88
lowQualScore : . ... . . .. . . . . . .. . . ...... .. . .... .................... . ... ........ . . . .. . .... . .... .... ............... . .... .. .... . . . .. . .. . ....... ..................... .... .. ...... . . .... . .. .. . . .. .. . . ........ ...... ..... . . . .......... . .... ... ...... ..
lowQualScore : 5 000 5 5 00 2 7 0 0 7 77 3 0 888888 88 7 6666 55555555555555555555 0 000 77777777 0 0 0 99 0 5555 0 1111 5555 999999999999999 0 9999 11 8888 4 4 9 22 0 55 9 2222222 000000000000000000000 5555 66 666666 8 0 1111 9 99 99 9 1 22 22 1 3 55555555 000000 33333 7 2 0 2222222222 0 5555 888 888888 55
consensus : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGACGGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
Reference ( family-3446 ) : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAANNACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGACGGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
gi|1 : TTATTTTCTAAAAAACATTGTAGATACTCCTTTATGTGTATGTGGCAAGATAGAAAGACACCAACAACATTCCTAGAATGTCCTCTGTACAATCAACTTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACTAACCTACTGCTCTTTGGAGA-CCAAA-CTATCAGTAATCTCAAAACAAATCTAT-TTTCAATCGGTACATAACTATA-TCAAGCAAAGTAAGAG-ATTCAA--TCCTGAGTGT-TATGTAT-TGTAAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCGA-AA-A--TAATTTC-ATACGACCTATCACA-AT-CATCATCACCACTTA---ATTGTA----TA-----TG--------TT-C---AGC--TTTT-A----TTGT-A-TTTAT-TGT-A--CTCA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-TAT-TATTATTATATGTTAC----ATAGGAGACGGA-TTT--ACAT--AAGTC-TTTCGAAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TGTTGTTTG--T-CGTAATACTTGTTTCAAA-AG-TC-A-ATAA-A----TACAGTTT---AAACCAAGTAAATTACCAG--TATTCT
gi|10 : tatgtaagtaaattactCGA-AA-A--TA-TTCC-ATACGACTCATCACACATACATCATAA-----TATATGTTATA----TA-----GGAGACAGATTTACATAAGTC-TTTT-GT-ACTTG----TTTCT-GAT-C--C-----------ATTTTG---------------------TTGTTTC---AACAACATA--TAATATACAG-T-TTATTATATGT-AC----A
gi|10 : -CAT-CATAAT-ATATGTTAT----ATAGGAGACAGA-TTT--ACAT--AAGTC-TTTTGTAC--TTGTT--TC-TG-A-TCC-AT--------------------T-TTG----------------TTGTTTC-AA-CA-AC-ATATAATA----TACAGTTT---Ag
gi|11 : cgaaaatattccatacgactcatcacacata-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATC--------------ATTATTATATGTTAC----ATAGGAGACAGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGT-T-TGTAGCACT-------------------TAA-A----TACAGTTT---AAAttatatgtacag
gi|12 : GAAGATT--TATTAT--------TATTATATGTTAC----ATAGGAGACATA-TTT--ACATTTAAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGA-T-TGTAGTACTTGTTTC-AA-CG-TC-A-ATAA-ATATGTACAGTTT---
gi|13 : ----ATAAGATACGGT-TTA--ACAC--AAGTC-TTT-GCAC--TTGTT--TT-CGAG-TCCTATTG--CACT--TGAAGT-ATGT-TTGTATGCTT-CATGTCATTTG-TTC-AA--A-TA-ATATAA-A----TATA
gi|14 : TTTCCTAGAATGTCCTCTGTACAATAAAATTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACCAACCTACTGCTCTTTGGAGACCCAAACTTATCAGT-ATCTCAAAACAAATCTAccaacatagaaaatcaatgtatattcaat
gi|15 : ctaGGAGACGGA-CTT--ACAT--AAGTC--TTCGCAC--TAGTT--TC-CGAA-TTCTGTTG--C-------ATGT----T-TCATGTG----------AATTA-TTC-A---G-TTAA-ATGA-A----TATAGTTTTTAAAACCAA--
gi|16 : tAAGAGCTGTTATAGAATGTCCTCTGTACAACCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAAttcaaccaaaaaa
gi|17 : caTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGATGG-AAGACACTAAGCACTTNCCTA
gi|18 : TAGAATGTCCTCTGTGCAATCAACTTCGGCGAAACTATCTTTCAAATCTAGCAAACAA
gi|2 : caTCTTTATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAGTTTTCAA-TTCCTGAGTGT-TATAAAA-C---AT--------------------GTTA-TT---TTTT--TTGGT-AATA
gi|2 : cTATT--------------------GTAA-TT---TATA--C--AC-AAGATGCGAGAA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCGCC-CTTA---TTTGTATTCTTA-----TG-------TTT-C----GCGCTTTT-GT-ATTTGT-A-ATTATCTGT-A--CTT--------AATTCCA---------------------TAGCTTC---AAGAAGATT--TATT-T-AAT-TATTATTATATGCAAC----ATAGGAGACGGC-TTTTGACAT--GA---------------CGTT--TC-CGAA-TCCTATgttagacttgcaatccatccttttcttattgtaatttatacacaagatgcgagaaataattccatacgacccatcacacatcatcatcgcccttatttgtattcttatgtttcgcgcttttgtatttgtaattatctgtacttaattccatagcttcaagaagatttatttaattattattatatgcaacataggagacggcttttgacatgacgtttccgaatcctatcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|3 : ctctttatttcaatcagtacataaatatatcaagcaaagtaagagttttcaattcctgagtgttataaaacatgttattttttttggtaatagttagacttgcaatccatccttttctTCTTAAAATGGTCATTGTACAATAAACTTTGACAAAAATATCTTTCAAATCTA--------------CACAAACCTACTGCACTTTGGGAATCCAAACCTATCAATA-TCTCAAAACAAATATATATTTCAATCAGTACATAAATATA-TAAAGCAAAGTA---------------CTAAGTAT-TATGTAA-CATAATAGTACTAAAGACTTGCATTTGTCC-TT---TTTTATT--GTCAGTATACGC-AA-G----ATGCG-A-AAGACCCATCACACGT-CATCATCACC-CTT-------GTA----TA-------------------------A-TT------ACTTAT-G-TTT-----------------------CTCCA---------------------TAGCTT----------------------CAT-TATACGTACATGTAAC----ATAGGAGATGGA-TTT--ACAT--AAGTC-TTTTGTAC--TTGTC--TC-CGAA-TCCTATCA--TAcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|4 : AAGTAAGAA-ATTCAA-TTCCTGAGTGT-TATGTAT-TGTGAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCAA-AC-A--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGTTTA---AAGAAGATT--TATTAT--A---ATTATTATACGTTAC----ATAGGAGACAGA-TTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGC-T-TGTAGTTCTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCActaa
gi|5 : A-TCAAGCAAAGTAAG-T-ATTGAC-TTCCTGAG-GTGTATGTAA-CATAAT--------------------GTTGTTT---TTTC--T--AT-AACA
gi|5 : T--------------------GTAA-TT---TATA--C--AC-AAGATGCGA-AA-AAATAAATCCTATACGACCCATCAC--------CATCACC-CTTA---ATTGTA----TACTTA-TG-------TTT-C---AGCACTTTT-GT-TTTTGTTA-TTTTT-TGTTA--CTTA------AAATCCCA---------------------TAGCTTC---AAGAACATTATTATTAT-TAC-TATTATTATATGTAATGGATATAGGAGACGGA-TTA--ACAT--GAGTC-TTTTGTAC--TTCTT--TC-attagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaaaaataaatcctatacgacccatcaccatcacccttaattgtatacttatgtttcagcacttttgtttttgttattttttgttacttaaaatcccatagcttcaagaacattattattattactattattatatgtaatggatataggagacggattaacatgagtcttttgtacttctttc
gi|6 : atcaagcaaagtaagtattgacttcctgaggtgtatgtaacataatgttgttttttctataacaattagacttgcaacctatccttttctcatATCAGTACATTAATATACTCAAACAATG-----G---TCAAGTTTCTGGGTAT-CATGTAA-CATCAT--------------------TTTA-TT---TTTC--T--TG-AATA
gi|6 : CA-TTTT-CTCATTGTT-A-TTTAT-----A--CACA------AGATGCGA---------------------AAGATGATTCCAGACGACC--CATTACACAT-CATCACCACCCTTAAC----ACAGGAGACAGA-TTT--ACAT--AAGTTATTTTGTAC--CTGTT--TC-CGAA-TCCTATCA--TTC---TAATAT-AATT-TTGTTTG--T-ATTA-CAC-TATT---------------TGA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTTcttaagatctgtcattttctcattgttatttatacacaagatgcgaaagatgattccagacgacccattacacatcatcaccacccttaacacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|7 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaatacttaagatctgtTGTATACGTAAT---------------------CCA-CTGAGTTTC--T--GT-AATA-GCGA-AA-G--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TAAATTATC-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-----TATTATCATATGTTAC----ATAGGAGACAGA-TTT--ACAT--AAGTC-TT-CGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--T-TTTTTAT--T-TGTAACACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AA
gi|8 : ATGTAT---TATT--------------------GTTA-TT---GTAC-----AC-AAGATGCGA-AAGA--TAATTCC-CCACGACCCATCACA----CATCATCACT-CTTG---TATATACT--TA-----TG-------TTT-C---AGCACTTTT-GT-ATTTGT-ACTTTTT-TGT-ATTTTTAAATGATAAATTGCAAACACTGTATGTTTAATTCCATAGTTTC---AGGACGATT--CCTTAT-C----ACTATGATATGTAAC----ACAGGAGACGGA-TTT--ACAC--TTGTC-TTTTATAcc
gi|9 : gttatctttgccttttcatgatattatatttctgtaatacATT--TATTAC-TGTATATCA----ATGTCAC----ATAGGAGACAGAATTT--GCAT--AAGTC-TGTCGTACGTCTGTTAATCTTGAAGTCCTGTTAATTAAATTTGAGGTCA--T-CGCTTTG--TGTGTAGCACAGTTTTC-AACCGTTC-A-ATAA-G----AACAGTTT---tc
Alignments
lowQualScore : 1 111 1 1 1 11 222222 1111 33333333333333333333 11111111 1 1111 1111 333333333333333 11 1111111 333333333333333333333 1111 222222 11111111 222222 22222 1111111111 111111 11
lowQualScore : 5 999 5 5 3 3 1 2 6 44 7 8 333333 99 6 1111 22222222222222222222 4 777 00000000 2 5 5 66 5 6666 5 1111 7777 555555555555555 5 8888 44 9999 4 4 4 66 4 55 0 2222222 444444444444444444444 2222 44 555555 0 4 6666 2 33 33 2 1 44 44 3 3 22222222 333333 55555 5 3 4 7777777777 4 8888 777 888888 88
lowQualScore : . ... . . . . . . . .. . . ...... .. . .... .................... . ... ........ . . . .. . .... . .... .... ............... . .... .. .... . . . .. . .. . ....... ..................... .... .. ...... . . .... . .. .. . . .. .. . . ........ ...... ..... . . . .......... . .... ... ...... ..
lowQualScore : 5 000 5 5 2 7 0 0 7 77 3 0 888888 88 7 6666 55555555555555555555 0 000 77777777 0 0 0 99 0 5555 0 1111 5555 999999999999999 0 9999 11 8888 4 4 9 22 0 55 9 2222222 000000000000000000000 5555 66 666666 8 0 1111 9 99 99 9 1 22 22 1 3 55555555 000000 33333 7 2 0 2222222222 0 5555 888 888888 55
consensus : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
Reference ( family-3446 ) : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
gi|1 : TTATTTTCTAAAAAACATTGTAGATACTCCTTTATGTGTATGTGGCAAGATAGAAAGACACCAACAACATTCCTAGAATGTCCTCTGTACAATCAACTTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACTAACCTACTGCTCTTTGGAGA-CCAAA-CTATCAGTAATCTCAAAACAAATCTAT-TTTCAATCGGTACATAACTATA-TCAAGCAAAGTAAGAG-ATTCAA--TCCTGAGTGT-TATGTAT-TGTAAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCGA-AA-A--TAATTTC-ATACGACCTATCACA-AT-CATCATCACCACTTA---ATTGTA----TA-----TG--------TT-C---AGC--TTTT-A----TTGT-A-TTTAT-TGT-A--CTCA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-TAT-TATTATTATATGTTAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGAAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TGTTGTTTG--T-CGTAATACTTGTTTCAAA-AG-TC-A-ATAA-A----TACAGTTT---AAACCAAGTAAATTACCAG--TATTCT
gi|10 : tatgtaagtaaattactCGA-AA-A--TA-TTCC-ATACGACTCATCACACATACATCATAA-----TATATGTTATA----TA-----GGAGACAGATTTACATAAGTC-TTTT-GT-ACTTG----TTTCT-GAT-C--C-----------ATTTTG---------------------TTGTTTC---AACAACATA--TAATATACAG-T-TTATTATATGT-AC----A
gi|10 : -CAT-CATAAT-ATATGTTAT----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTTGTAC--TTGTT--TC-TG-A-TCC-AT--------------------T-TTG----------------TTGTTTC-AA-CA-AC-ATATAATA----TACAGTTT---Ag
gi|11 : cgaaaatattccatacgactcatcacacata-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATC--------------ATTATTATATGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGT-T-TGTAGCACT-------------------TAA-A----TACAGTTT---AAAttatatgtacag
gi|12 : GAAGATT--TATTAT--------TATTATATGTTAC----ATAGGAGAC-ATATTT--ACATTTAAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGA-T-TGTAGTACTTGTTTC-AA-CG-TC-A-ATAA-ATATGTACAGTTT---
gi|13 : ----ATAAGATAC-GGTTTA--ACAC--AAGTC-TTT-GCAC--TTGTT--TT-CGAG-TCCTATTG--CACT--TGAAGT-ATGT-TTGTATGCTT-CATGTCATTTG-TTC-AA--A-TA-ATATAA-A----TATA
gi|14 : TTTCCTAGAATGTCCTCTGTACAATAAAATTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACCAACCTACTGCTCTTTGGAGACCCAAACTTATCAGT-ATCTCAAAACAAATCTAccaacatagaaaatcaatgtatattcaat
gi|15 : ctaGGAGAC-GGACTT--ACAT--AAGTC--TTCGCAC--TAGTT--TC-CGAA-TTCTGTTG--C-------ATGT----T-TCATGTG----------AATTA-TTC-A---G-TTAA-ATGA-A----TATAGTTTTTAAAACCAA--
gi|16 : tAAGAGCTGTTATAGAATGTCCTCTGTACAACCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAAttcaaccaaaaaa
gi|17 : caTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGATGG-AAGACACTAAGCACTTNCCTA
gi|18 : TAGAATGTCCTCTGTGCAATCAACTTCGGCGAAACTATCTTTCAAATCTAGCAAACAA
gi|2 : caTCTTTATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAGTTTTCAA-TTCCTGAGTGT-TATAAAA-C---AT--------------------GTTA-TT---TTTT--TTGGT-AATA
gi|2 : cTATT--------------------GTAA-TT---TATA--C--AC-AAGATGCGAGAA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCGCC-CTTA---TTTGTATTCTTA-----TG-------TTT-C----GCGCTTTT-GT-ATTTGT-A-ATTATCTGT-A--CTT--------AATTCCA---------------------TAGCTTC---AAGAAGATT--TATT-T-AAT-TATTATTATATGCAAC----ATAGGAGAC-GGCTTTTGACAT--GA---------------CGTT--TC-CGAA-TCCTATgttagacttgcaatccatccttttcttattgtaatttatacacaagatgcgagaaataattccatacgacccatcacacatcatcatcgcccttatttgtattcttatgtttcgcgcttttgtatttgtaattatctgtacttaattccatagcttcaagaagatttatttaattattattatatgcaacataggagacggcttttgacatgacgtttccgaatcctatcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|3 : ctctttatttcaatcagtacataaatatatcaagcaaagtaagagttttcaattcctgagtgttataaaacatgttattttttttggtaatagttagacttgcaatccatccttttctTCTTAAAATGGTCATTGTACAATAAACTTTGACAAAAATATCTTTCAAATCTA--------------CACAAACCTACTGCACTTTGGGAATCCAAACCTATCAATA-TCTCAAAACAAATATATATTTCAATCAGTACATAAATATA-TAAAGCAAAGTA---------------CTAAGTAT-TATGTAA-CATAATAGTACTAAAGACTTGCATTTGTCC-TT---TTTTATT--GTCAGTATACGC-AA-G----ATGCG-A-AAGACCCATCACACGT-CATCATCACC-CTT-------GTA----TA-------------------------A-TT------ACTTAT-G-TTT-----------------------CTCCA---------------------TAGCTT----------------------CAT-TATACGTACATGTAAC----ATAGGAGAT-GGATTT--ACAT--AAGTC-TTTTGTAC--TTGTC--TC-CGAA-TCCTATCA--TAcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|4 : AAGTAAGAA-ATTCAA-TTCCTGAGTGT-TATGTAT-TGTGAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCAA-AC-A--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGTTTA---AAGAAGATT--TATTAT--A---ATTATTATACGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGC-T-TGTAGTTCTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCActaa
gi|5 : A-TCAAGCAAAGTAAG-T-ATTGAC-TTCCTGAG-GTGTATGTAA-CATAAT--------------------GTTGTTT---TTTC--T--AT-AACA
gi|5 : T--------------------GTAA-TT---TATA--C--AC-AAGATGCGA-AA-AAATAAATCCTATACGACCCATCAC--------CATCACC-CTTA---ATTGTA----TACTTA-TG-------TTT-C---AGCACTTTT-GT-TTTTGTTA-TTTTT-TGTTA--CTTA------AAATCCCA---------------------TAGCTTC---AAGAACATTATTATTAT-TAC-TATTATTATATGTAATGGATATAGGAGAC-GGATTA--ACAT--GAGTC-TTTTGTAC--TTCTT--TC-attagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaaaaataaatcctatacgacccatcaccatcacccttaattgtatacttatgtttcagcacttttgtttttgttattttttgttacttaaaatcccatagcttcaagaacattattattattactattattatatgtaatggatataggagacggattaacatgagtcttttgtacttctttc
gi|6 : atcaagcaaagtaagtattgacttcctgaggtgtatgtaacataatgttgttttttctataacaattagacttgcaacctatccttttctcatATCAGTACATTAATATACTCAAACAATG-----G---TCAAGTTTCTGGGTAT-CATGTAA-CATCAT--------------------TTTA-TT---TTTC--T--TG-AATA
gi|6 : CA-TTTT-CTCATTGTT-A-TTTAT-----A--CACA------AGATGCGA---------------------AAGATGATTCCAGACGACC--CATTACACAT-CATCACCACCCTTAAC----ACAGGAGAC-AGATTT--ACAT--AAGTTATTTTGTAC--CTGTT--TC-CGAA-TCCTATCA--TTC---TAATAT-AATT-TTGTTTG--T-ATTA-CAC-TATT---------------TGA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTTcttaagatctgtcattttctcattgttatttatacacaagatgcgaaagatgattccagacgacccattacacatcatcaccacccttaacacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|7 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaatacttaagatctgtTGTATACGTAAT---------------------CCA-CTGAGTTTC--T--GT-AATA-GCGA-AA-G--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TAAATTATC-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-----TATTATCATATGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TT-CGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--T-TTTTTAT--T-TGTAACACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AA
gi|8 : ATGTAT---TATT--------------------GTTA-TT---GTAC-----AC-AAGATGCGA-AAGA--TAATTCC-CCACGACCCATCACA----CATCATCACT-CTTG---TATATACT--TA-----TG-------TTT-C---AGCACTTTT-GT-ATTTGT-ACTTTTT-TGT-ATTTTTAAATGATAAATTGCAAACACTGTATGTTTAATTCCATAGTTTC---AGGACGATT--CCTTAT-C----ACTATGATATGTAAC----ACAGGAGAC-GGATTT--ACAC--TTGTC-TTTTATAcc
gi|9 : gttatctttgccttttcatgatattatatttctgtaatacATT--TATTAC-TGTATATCA----ATGTCAC----ATAGGAGACAGAATTT--GCAT--AAGTC-TGTCGTACGTCTGTTAATCTTGAAGTCCTGTTAATTAAATTTGAGGTCA--T-CGCTTTG--TGTGTAGCACAGTTTTC-AACCGTTC-A-ATAA-G----AACAGTTT---tc
Alignments
lowQualScore : 1 111 1 1 1 11 222222 1111 33333333333333333333 11111111 1 1111 1111 333333333333333 11 1111111 333333333333333333333 1111 222222 11111111 222222 22222 1111111111 111111 11
lowQualScore : 5 999 5 5 3 3 1 2 6 44 7 8 333333 99 6 1111 22222222222222222222 4 777 00000000 2 5 5 66 5 6666 5 1111 7777 555555555555555 5 8888 44 9999 4 4 4 66 4 55 0 2222222 444444444444444444444 2222 44 555555 0 4 6666 2 33 33 2 1 44 44 3 3 22222222 333333 55555 5 3 4 7777777777 4 8888 777 888888 88
lowQualScore : . ... . . . . . . . .. . . ...... .. . .... .................... . ... ........ . . . .. . .... . .... .... ............... . .... .. .... . . . .. . .. . ....... ..................... .... .. ...... . . .... . .. .. . . .. .. . . ........ ...... ..... . . . .......... . .... ... ...... ..
lowQualScore : 5 000 5 5 2 7 0 0 7 77 3 0 888888 88 7 6666 55555555555555555555 0 000 77777777 0 0 0 99 0 5555 0 1111 5555 999999999999999 0 9999 11 8888 4 4 9 22 0 55 9 2222222 000000000000000000000 5555 66 666666 8 0 1111 9 99 99 9 1 22 22 1 3 55555555 000000 33333 7 2 0 2222222222 0 5555 888 888888 55
consensus : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
Reference ( family-3446 ) : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
gi|1 : TTATTTTCTAAAAAACATTGTAGATACTCCTTTATGTGTATGTGGCAAGATAGAAAGACACCAACAACATTCCTAGAATGTCCTCTGTACAATCAACTTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACTAACCTACTGCTCTTTGGAGA-CCAAA-CTATCAGTAATCTCAAAACAAATCTAT-TTTCAATCGGTACATAACTATA-TCAAGCAAAGTAAGAG-ATTCAA--TCCTGAGTGT-TATGTAT-TGTAAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCGA-AA-A--TAATTTC-ATACGACCTATCACA-AT-CATCATCACCACTTA---ATTGTA----TA-----TG--------TT-C---AGC--TTTT-A----TTGT-A-TTTAT-TGT-A--CTCA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-TAT-TATTATTATATGTTAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGAAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TGTTGTTTG--T-CGTAATACTTGTTTCAAA-AG-TC-A-ATAA-A----TACAGTTT---AAACCAAGTAAATTACCAG--TATTCT
gi|10 : tatgtaagtaaattactCGA-AA-A--TA-TTCC-ATACGACTCATCACACATACATCATAA-----TATATGTTATA----TA-----GGAGACAGATTTACATAAGTC-TTTT-GT-ACTTG----TTTCT-GAT-C--C-----------ATTTTG---------------------TTGTTTC---AACAACATA--TAATATACAG-T-TTATTATATGT-AC----A
gi|10 : -CAT-CATAAT-ATATGTTAT----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTTGTAC--TTGTT--TC-TG-A-TCC-AT--------------------T-TTG----------------TTGTTTC-AA-CA-AC-ATATAATA----TACAGTTT---Ag
gi|11 : cgaaaatattccatacgactcatcacacata-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATC--------------ATTATTATATGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGT-T-TGTAGCACT-------------------TAA-A----TACAGTTT---AAAttatatgtacag
gi|12 : GAAGATT--TATTAT--------TATTATATGTTAC----ATAGGAGAC-ATATTT--ACATTTAAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGA-T-TGTAGTACTTGTTTC-AA-CG-TC-A-ATAA-ATATGTACAGTTT---
gi|13 : ----ATAAGATAC-GGTTTA--ACAC--AAGTC-TTT-GCAC--TTGTT--TT-CGAG-TCCTATTG--CACT--TGAAGT-ATGT-TTGTATGCTT-CATGTCATTTG-TTC-AA--A-TA-ATATAA-A----TATA
gi|14 : TTTCCTAGAATGTCCTCTGTACAATAAAATTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACCAACCTACTGCTCTTTGGAGACCCAAACTTATCAGT-ATCTCAAAACAAATCTAccaacatagaaaatcaatgtatattcaat
gi|15 : ctaGGAGAC-GGACTT--ACAT--AAGTC--TTCGCAC--TAGTT--TC-CGAA-TTCTGTTG--C-------ATGT----T-TCATGTG----------AATTA-TTC-A---G-TTAA-ATGA-A----TATAGTTTTTAAAACCAA--
gi|16 : tAAGAGCTGTTATAGAATGTCCTCTGTACAACCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAAttcaaccaaaaaa
gi|17 : caTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGATGG-AAGACACTAAGCACTTNCCTA
gi|18 : TAGAATGTCCTCTGTGCAATCAACTTCGGCGAAACTATCTTTCAAATCTAGCAAACAA
gi|2 : caTCTTTATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAGTTTTCAA-TTCCTGAGTGT-TATAAAA-C---AT--------------------GTTA-TT---TTTT--TTGGT-AATA
gi|2 : cTATT--------------------GTAA-TT---TATA--C--AC-AAGATGCGAGAA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCGCC-CTTA---TTTGTATTCTTA-----TG-------TTT-C----GCGCTTTT-GT-ATTTGT-A-ATTATCTGT-A--CTT--------AATTCCA---------------------TAGCTTC---AAGAAGATT--TATT-T-AAT-TATTATTATATGCAAC----ATAGGAGAC-GGCTTTTGACAT--GA---------------CGTT--TC-CGAA-TCCTATgttagacttgcaatccatccttttcttattgtaatttatacacaagatgcgagaaataattccatacgacccatcacacatcatcatcgcccttatttgtattcttatgtttcgcgcttttgtatttgtaattatctgtacttaattccatagcttcaagaagatttatttaattattattatatgcaacataggagacggcttttgacatgacgtttccgaatcctatcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|3 : ctctttatttcaatcagtacataaatatatcaagcaaagtaagagttttcaattcctgagtgttataaaacatgttattttttttggtaatagttagacttgcaatccatccttttctTCTTAAAATGGTCATTGTACAATAAACTTTGACAAAAATATCTTTCAAATCTA--------------CACAAACCTACTGCACTTTGGGAATCCAAACCTATCAATA-TCTCAAAACAAATATATATTTCAATCAGTACATAAATATA-TAAAGCAAAGTA---------------CTAAGTAT-TATGTAA-CATAATAGTACTAAAGACTTGCATTTGTCC-TT---TTTTATT--GTCAGTATACGC-AA-G----ATGCG-A-AAGACCCATCACACGT-CATCATCACC-CTT-------GTA----TA-------------------------A-TT------ACTTAT-G-TTT-----------------------CTCCA---------------------TAGCTT----------------------CAT-TATACGTACATGTAAC----ATAGGAGAT-GGATTT--ACAT--AAGTC-TTTTGTAC--TTGTC--TC-CGAA-TCCTATCA--TAcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|4 : AAGTAAGAA-ATTCAA-TTCCTGAGTGT-TATGTAT-TGTGAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCAA-AC-A--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGTTTA---AAGAAGATT--TATTAT--A---ATTATTATACGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A----TTGTTTGC-T-TGTAGTTCTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCActaa
gi|5 : A-TCAAGCAAAGTAAG-T-ATTGAC-TTCCTGAG-GTGTATGTAA-CATAAT--------------------GTTGTTT---TTTC--T--AT-AACA
gi|5 : T--------------------GTAA-TT---TATA--C--AC-AAGATGCGA-AA-AAATAAATCCTATACGACCCATCAC--------CATCACC-CTTA---ATTGTA----TACTTA-TG-------TTT-C---AGCACTTTT-GT-TTTTGTTA-TTTTT-TGTTA--CTTA------AAATCCCA---------------------TAGCTTC---AAGAACATTATTATTAT-TAC-TATTATTATATGTAATGGATATAGGAGAC-GGATTA--ACAT--GAGTC-TTTTGTAC--TTCTT--TC-attagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaaaaataaatcctatacgacccatcaccatcacccttaattgtatacttatgtttcagcacttttgtttttgttattttttgttacttaaaatcccatagcttcaagaacattattattattactattattatatgtaatggatataggagacggattaacatgagtcttttgtacttctttc
gi|6 : atcaagcaaagtaagtattgacttcctgaggtgtatgtaacataatgttgttttttctataacaattagacttgcaacctatccttttctcatATCAGTACATTAATATACTCAAACAATG-----G---TCAAGTTTCTGGGTAT-CATGTAA-CATCAT--------------------TTTA-TT---TTTC--T--TG-AATA
gi|6 : CA-TTTT-CTCATTGTT-A-TTTAT-----A--CACA------AGATGCGA---------------------AAGATGATTCCAGACGACC--CATTACACAT-CATCACCACCCTTAAC----ACAGGAGAC-AGATTT--ACAT--AAGTTATTTTGTAC--CTGTT--TC-CGAA-TCCTATCA--TTC---TAATAT-AATT-TTGTTTG--T-ATTA-CAC-TATT---------------TGA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTTcttaagatctgtcattttctcattgttatttatacacaagatgcgaaagatgattccagacgacccattacacatcatcaccacccttaacacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|7 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaatacttaagatctgtTGTATACGTAAT---------------------CCA-CTGAGTTTC--T--GT-AATA-GCGA-AA-G--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TAAATTATC-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-----TATTATCATATGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TT-CGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--T-TTTTTAT--T-TGTAACACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AA
gi|8 : ATGTAT---TATT--------------------GTTA-TT---GTAC-----AC-AAGATGCGA-AAGA--TAATTCC-CCACGACCCATCACA----CATCATCACT-CTTG---TATATACT--TA-----TG-------TTT-C---AGCACTTTT-GT-ATTTGT-ACTTTTT-TGT-ATTTTTAAATGATAAATTGCAAACACTGTATGTTTAATTCCATAGTTTC---AGGACGATT--CCTTAT-C----ACTATGATATGTAAC----ACAGGAGAC-GGATTT--ACAC--TTGTC-TTTTATAcc
gi|9 : gttatctttgccttttcatgatattatatttctgtaatacATT--TATTAC-TGTATATCA----ATGTCAC----ATAGGAGACAGAATTT--GCAT--AAGTC-TGTCGTACGTCTGTTAATCTTGAAGTCCTGTTAATTAAATTTGAGGTCA--T-CGCTTTG--TGTGTAGCACAGTTTTC-AACCGTTC-A-ATAA-G----AACAGTTT---tc
blockSeqs : . G . . A T C C C A A C AGAGTT GT G TACG AGTACTAAAGACTTGCATTT T GAG ATTGTC T G G AA T CATA . TATG TTCT GGAGACAGAT A ATAA GC TGT T C C CT T TT AAATGAT AACACTGTATGTTTAATTCCA ATTC AT ACAGT T GGAT A TG TT A T GT AA T G ATTAAATT ATGT CTTC G T . ACCGTTCA T TATG TTA AA AT
blockSeqs : C . A T C A A . AGAAA T . ACA . . . TTGGT T . . . . CAT . T CT AATTATCT . A AC CTC . . A G . . A . C . ACATC T . . . . . C . . . . CACT AATT TTT G T . ACAACAT . . .
blockSeqs : C . AGTA T . TTG . . . CAC T . . . . CGT . A . CTTATGT . A AC TGT . . A T . . A . A . TGTAT T . . . . . C . . . . TAA CAT ATT T T . ACGTCA . . .
blockSeqs : T . G T . ACA . . . TGT T . . . . CAT . A . TGT . A C GT . . T T . . A . C . CATC A . . . . . C . . . . TAA AT CTT G T . AATAAT . . .
blockSeqs : . . . ACA . . . TAT . . . . . CAT . A . TGT . A A GT . . A T . . A . A . AATT A . . . . . T . . . . TAA T TGT A T . ACGTCA . . .
blockSeqs : AC . . . CAC . . . . . . . T . TGT . . A GT . . A T . . A . C . CATT T . . . . . C . . . . TTC A TA G T . ACGTCA . . .
blockSeqs : T . . . TTG . . . . . . . . . . . A GT . . T . . . . . A . TACT A . . . . . T . . . . TAA A TT . . . GTTAA . . .
blockSeqs : . . . TGT A . . . . . . . . . C . A A . . . . . T . . . . C T . . . . . . . .
blockSeqs : . . . AC . . . . . . T T . . . . . C . . . . . A . . . . . . .
blockSeqs : . C A . . . . . T . . . .
blockSeqs : . . C . . . . . C . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : AGN*** T* CAT* TGT************ A* GT** A***** TTT**
originalCons : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGAG-ATTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--T-TTGTTTG--T-CGTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
finalCons : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTAAGN---TTCAAT-TCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TATGT------------TT-C---AGCA-TTTTGT--ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGTA-----TTGTTTGTTT--GTAGCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
Alignments
lowQualScore : 1 111 1 1 1 11 4444444444 1111 33333333333333333333 11111111 1 1111 1111 333333333333333 11 1111111 333333333333333333333 1111 222222 11111111 1111111111 1111111111 111111 11
lowQualScore : 5 999 5 5 3 3 1 2 6 44 7 8 3333333333 99 6 1111 22222222222222222222 4 777 00000000 2 5 5 66 5 6666 5 1111 7777 555555555555555 5 8888 44 9999 4 4 4 66 4 55 0 2222222 444444444444444444444 2222 44 555555 0 4 6666 2 33 33 2 1 44 44 3 3 22222222 88888 4 33 3333333333 3 4 7777777777 4 8888 777 888888 88
lowQualScore : . ... . . . . . . . .. . . .......... .. . .... .................... . ... ........ . . . .. . .... . .... .... ............... . .... .. .... . . . .. . .. . ....... ..................... .... .. ...... . . .... . .. .. . . .. .. . . ........ ..... . .. .......... . . .......... . .... ... ...... ..
lowQualScore : 5 000 5 5 2 7 0 0 7 77 3 0 8888888888 88 7 6666 55555555555555555555 0 000 77777777 0 0 0 99 0 5555 0 1111 5555 999999999999999 0 9999 11 8888 4 4 9 22 0 55 9 2222222 000000000000000000000 5555 66 666666 8 0 1111 9 99 99 9 1 22 22 1 3 55555555 77777 0 22 4444444444 2 0 2222222222 0 5555 888 888888 55
consensus : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTA--AG------TTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--TTG-TTTGTTTG-----TA--GCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
Reference ( family-3446 ) : NNNNNNNNNNNNNNNNNTTATTCTCTAAAAAGCATTGTAGANACTCCTCTATGTGTATGTGGCAAGATGGAAAGACACCAAGAACTTTCCTAGAATGTCCTCTGTACAATCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACNAACCTACTGCTCTTTGGAGACCCAAACCTATCAGTAATCTCAAAACAAATCTATATTTCAATCAGTACATAAATATA-TCAAGCAAAGTA--AG---N--TTCAA-TTCCTGAGTGT-TATGTAN-CGTAAT--------------------GTTA-TT---TTTC--T--GT-AATATGCGA-AA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTT-GT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-CAT-TATTATTATATGTNAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-CGAA-TCCTATTA--TAA---TGATGT-A--TTG-TTTGTTTG-----TA--GCACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCAA--AAATTACCAGATTATTCT
gi|1 : TTATTTTCTAAAAAACATTGTAGATACTCCTTTATGTGTATGTGGCAAGATAGAAAGACACCAACAACATTCCTAGAATGTCCTCTGTACAATCAACTTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTCAACACTAACCTACTGCTCTTTGGAGA-CCAAA-CTATCAGTAATCTCAAAACAAATCTAT-TTTCAATCGGTACATAACTATA-TCAAGCAAAGTAAGAG---A--TTCAA--TCCTGAGTGT-TATGTAT-TGTAAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCGA-AA-A--TAATTTC-ATACGACCTATCACA-AT-CATCATCACCACTTA---ATTGTA----TA-----TG--------TT-C---AGC--TTTT-A----TTGT-A-TTTAT-TGT-A--CTCA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-TAT-TATTATTATATGTTAC----ATAGGAGAC-GGATTT--ACAT--AAGTC-TTTCGAAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-ATGTTG-TTTG-TCG-----TA--ATACTTGTTTCAAA-AG-TC-A-ATAA-A----TACAGTTT---AAACCAAGTAAATTACCAG--TATTCT
gi|10 : tatgtaagtaaattactCGA-AA-A--TA-TTCC-ATACGACTCATCACACATACATCATAA-----TATATGTTATA----TA-----GGAGACAGATTTACATAAGTC-TTTT-GT-ACTTG----TTTCT-GAT-C--C-----------ATTTTG---------------------TTGTTTC---AACAACATA--TAATATACAG-T-TTATTATATGT-AC----A
gi|10 : -CAT-CATAAT-ATATGTTAT----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTTGTAC--TTGTT--TC-TG-A-TCC-ATT-------------------TTG----------------------TTGTTTC-AA-CA-AC-ATATAATA----TACAGTTT---Ag
gi|11 : cgaaaatattccatacgactcatcacacata-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATC--------------ATTATTATATGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TTG-TTTGTTTG-----TA--GCACT-------------------TAA-A----TACAGTTT---AAAttatatgtacag
gi|12 : GAAGATT--TATTAT--------TATTATATGTTAC----ATAGGAGAC-ATATTT--ACATTTAAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TTG-TTTGATTG-----TA--GTACTTGTTTC-AA-CG-TC-A-ATAA-ATATGTACAGTTT---
gi|13 : ----ATAAGATAC-GGTTTA--ACAC--AAGTC-TTT-GCAC--TTGTT--TT-CGAG-TCCTATTG--CACT--TGAAGT-A---TG-TTTGTATGCTTCATG--TCATTTG-TTC-AA--A-TA-ATATAA-A----TATA
gi|14 : TTTCCTAGAATGTCCTCTGTACAATAAAATTAGGCGAAAATATCTTTCAAATCTAGCAAACAATGTTAACACCAACCTACTGCTCTTTGGAGACCCAAACTTATCAGT-ATCTCAAAACAAATCTAccaacatagaaaatcaatgtatattcaat
gi|15 : ctaGGAGAC-GGACTT--ACAT--AAGTC--TTCGCAC--TAGTT--TC-CGAA-TTCTGTTG--C-------ATGT--------TTCATGTG-----------AATTA-TTC-A---G-TTAA-ATGA-A----TATAGTTTTTAAAACCAA--
gi|16 : tAAGAGCTGTTATAGAATGTCCTCTGTACAACCAACTTCGGCGAAAATATCTTTCAAATCTAGCAAACAAttcaaccaaaaaa
gi|17 : caTTATTCTC-AAAAAGCATTGTAGAG--TCCTCTATA-ATATGTGGCAAGATGG-AAGACACTAAGCACTTNCCTA
gi|18 : TAGAATGTCCTCTGTGCAATCAACTTCGGCGAAACTATCTTTCAAATCTAGCAAACAA
gi|2 : caTCTTTATTTCAATCAGTACATAAATATA-TCAAGCAAAGTA--AGAGTT--TTCAA-TTCCTGAGTGT-TATAAAA-C---AT--------------------GTTA-TT---TTTT--TTGGT-AATA
gi|2 : cTATT--------------------GTAA-TT---TATA--C--AC-AAGATGCGAGAA-A--TAATTCC-ATACGACCCATCACACAT-CATCATCGCC-CTTA---TTTGTATTCTTA-----TG-------TTT-C----GCGCTTTT-GT-ATTTGT-A-ATTATCTGT-A--CTT--------AATTCCA---------------------TAGCTTC---AAGAAGATT--TATT-T-AAT-TATTATTATATGCAAC----ATAGGAGAC-GGCTTTTGACAT--GA---------------CGTT--TC-CGAA-TCCTATgttagacttgcaatccatccttttcttattgtaatttatacacaagatgcgagaaataattccatacgacccatcacacatcatcatcgcccttatttgtattcttatgtttcgcgcttttgtatttgtaattatctgtacttaattccatagcttcaagaagatttatttaattattattatatgcaacataggagacggcttttgacatgacgtttccgaatcctatcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|3 : ctctttatttcaatcagtacataaatatatcaagcaaagtaagagttttcaattcctgagtgttataaaacatgttattttttttggtaatagttagacttgcaatccatccttttctTCTTAAAATGGTCATTGTACAATAAACTTTGACAAAAATATCTTTCAAATCTA--------------CACAAACCTACTGCACTTTGGGAATCCAAACCTATCAATA-TCTCAAAACAAATATATATTTCAATCAGTACATAAATATA-TAAAGCAAAGTA-------------------CTAAGTAT-TATGTAA-CATAATAGTACTAAAGACTTGCATTTGTCC-TT---TTTTATT--GTCAGTATACGC-AA-G----ATGCG-A-AAGACCCATCACACGT-CATCATCACC-CTT-------GTA----TA-------------------------A-TT------ACTTAT-G-TTT-----------------------CTCCA---------------------TAGCTT----------------------CAT-TATACGTACATGTAAC----ATAGGAGAT-GGATTT--ACAT--AAGTC-TTTTGTAC--TTGTC--TC-CGAA-TCCTATCA--TAcctatcctatcttgtcagtggaaatactgttagttggaagtgcattcattatttccaggcaaagttattc
gi|4 : AAGTA--AG---AAATTCAA-TTCCTGAGTGT-TATGTAT-TGTGAT--------------------GTTA-TT---TTTC--T--GT-AATA-GCAA-AC-A--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TA-----TG-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGTTTA---AAGAAGATT--TATTAT--A---ATTATTATACGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TTTCGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TTG-TTTGCTTG-----TA--GTTCTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AAACCActaa
gi|5 : A-TCAAGCAAAGTA--AG---TA-TTGAC-TTCCTGAG-GTGTATGTAA-CATAAT--------------------GTTGTTT---TTTC--T--AT-AACA
gi|5 : T--------------------GTAA-TT---TATA--C--AC-AAGATGCGA-AA-AAATAAATCCTATACGACCCATCAC--------CATCACC-CTTA---ATTGTA----TACTTA-TG-------TTT-C---AGCACTTTT-GT-TTTTGTTA-TTTTT-TGTTA--CTTA------AAATCCCA---------------------TAGCTTC---AAGAACATTATTATTAT-TAC-TATTATTATATGTAATGGATATAGGAGAC-GGATTA--ACAT--GAGTC-TTTTGTAC--TTCTT--TC-attagacttgcaacctatccttttctcattgtaatttatacacaagatgcgaaaaaataaatcctatacgacccatcaccatcacccttaattgtatacttatgtttcagcacttttgtttttgttattttttgttacttaaaatcccatagcttcaagaacattattattattactattattatatgtaatggatataggagacggattaacatgagtcttttgtacttctttc
gi|6 : atcaagcaaagtaagtattgacttcctgaggtgtatgtaacataatgttgttttttctataacaattagacttgcaacctatccttttctcatATCAGTACATTAATATACTCAAACAATG-----G-------TCAAGTTTCTGGGTAT-CATGTAA-CATCAT--------------------TTTA-TT---TTTC--T--TG-AATA
gi|6 : CA-TTTT-CTCATTGTT-A-TTTAT-----A--CACA------AGATGCGA---------------------AAGATGATTCCAGACGACC--CATTACACAT-CATCACCACCCTTAAC----ACAGGAGAC-AGATTT--ACAT--AAGTTATTTTGTAC--CTGTT--TC-CGAA-TCCTATCA--TTC---TAATAT-A--AT--TTTGTTTG-----TATTACAC-TATT---------------TGA-A----TACAGTTT---AAACCAA--AA--TATCAGATTATTTTcttaagatctgtcattttctcattgttatttatacacaagatgcgaaagatgattccagacgacccattacacatcatcaccacccttaacacaggagacagatttacataagttattttgtacctgtttccgaatcctatcattctaatataattttgtttgtattacactatttgaatacagtttaaaccaaaatatcagattatttt
gi|7 : atcagtacattaatatactcaaacaatggtcaagtttctgggtatcatgtaacatcattttatttttcttgaatacttaagatctgtTGTATACGTAAT---------------------CCA-CTGAGTTTC--T--GT-AATA-GCGA-AA-G--TAATTTC-ATACGACCTATCACACAT-CATCATCACC-CTTA---ATTGTA----TAAATTATC-------TTT-C---AGCA-TTTTTGT-ATTTGT-A-TTTAT-TGT-A--CTTA------AAATTCCA---------------------TAGCTTA---AAGAAGATT--TATTAT-----TATTATCATATGTTAC----ATAGGAGAC-AGATTT--ACAT--AAGTC-TT-CGTAC--TTGTT--TC-TGAA-TCCTATTA--TAA---TGATGT-A--TTT-TTTATTTG-----TA--ACACTTGTTTC-AA-CG-TC-A-ATAA-A----TACAGTTT---AA
gi|8 : ATGTAT---TATT--------------------GTTA-TT---GTAC-----AC-AAGATGCGA-AAGA--TAATTCC-CCACGACCCATCACA----CATCATCACT-CTTG---TATATACT--TA-----TG-------TTT-C---AGCACTTTT-GT-ATTTGT-ACTTTTT-TGT-ATTTTTAAATGATAAATTGCAAACACTGTATGTTTAATTCCATAGTTTC---AGGACGATT--CCTTAT-C----ACTATGATATGTAAC----ACAGGAGAC-GGATTT--ACAC--TTGTC-TTTTATAcc
gi|9 : gttatctttgccttttcatgatattatatttctgtaatacATT--TATTAC-TGTATATCA----ATGTCAC----ATAGGAGACAGAATTT--GCAT--AAGTC-TGTCGTACGTCTGTTAATCTTGAAGTCCTGTTAATTAAATTTGAGGTCA--TCGCTTTGTGTG-----TA--GCACAGTTTTC-AACCGTTC-A-ATAA-G----AACAGTTT---tc