lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 2 111 7777777777777777777 1 333 2222 11 1111 4444444444 333333333333 111 22222222222222222222222222222222222222222222 33333 1111 11 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222 22222222222222 111 11 44444444444444444444444 11111 7777777777777777777777777777777777777777777777777777 44444444444444444444444444444
lowQualScore : 0 3 4 8 1 4 555 6666666666666666666 5 2 111 7777 99 4 8888 2 3 4444444444 6 333333333333 333 44444444444444444444444444444444444444444444 66 1 0 0 22222 7 5555 66 3 6 444 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333 5 99999999999999 000 33 88 88888888888888888888888 99999 3 1 77 7777777777777777777777777777777777777777777777777777 99999999999999999999999999999 3 1 0 5 5 4
lowQualScore : . . . . . . ... ................... . . ... .... .. . .... . . .......... . ............ ... ............................................ .. . . . ..... . .... .. . . ... .................................................................................................... .......... . .............. ... .. .. ....................... ..... . . .. .................................................... ............................. . . . . . .
lowQualScore : 8 8 0 0 4 0 666 2222222222222222222 5 5 000 0000 55 0 0000 5 0 5555555555 7 777777777777 333 66666666666666666666666666666666666666666666 00 4 8 8 66666 4 4444 00 8 2 666 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0000000000 0 44444444444444 000 33 11 00000000000000000000000 00000 0 7 99 4444444444444444444444444444444444444444444444444444 77777777777777777777777777777 0 0 8 0 4 6
consensus : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGTC-ATCGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTAC-T--GG--GAAACCCTGTCTGGATATNTTGAGAGAATTCCCGAAGAGCTCTAACNAGNCCAAGGCATTCGTCCGGCTTCGGCNAACTGGTCAAATACACAAA-G--TCGAAAA-GTCCAA-GGACACT--CGGATGT-AACTGGT-------GCGAATGTATGCAAACTGGNTAAATACAGGAAAAGAAA--CG-CATGCGTTC---CGATCAAAACGTANAAC-ANCGCAT-----------CT-TATTAA-CAG-ACAC-CGT-GTTCTAAGC-GG-GACT--ACAT--AGTCCGG------------TT-----G--------------TTTGAACATGCTC---------AAAAC-T--------------TTC---CGCCGGATAGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGCAAGAGAAA--CGGACAAGAAACGC----------A-------GA----CG------A---AC--------------GGATTGACA--A--T----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
Reference ( gi|1 ) : AAGACTACAAGGCCTTCACCTTTCTTCCTCTG-C-ATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTAC-G--AG--AAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGTCCTAACAAGTCCAAGGCATTTGTCCGGCTTCGGCTA--TG-TC---TACACAAA-G--TCGAAAAAGTCCAAAGGACACT-ACGGATGT-AACTGGTCACATACACAAATATATACAACCTGGACAAATACAGGAAAAGAAA-ACG-CATGTGTTC---CGATGAAAACGTAAAAC-AACGCAT-----------TT-TATTAA-TAG-ATAC-CGT-GTTCTAAGCCGA-GACTACACAT--AGTCCAG------------TT-----G--------------TTTGAACATGCTC---------AAAAC-T--------------TTC---CGCGGGATAGAT-CGGACTTCGTCGG---AC--------CAAGGAATGCAGTGGCTACAAAAGAAA--CGGACAAGAAACGC----------A-------GG----CG------A---AC--------------GGATTGACA--A--T----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|13 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CCATTGACAAAGCTGGGGAAGAGCAGACCGCCGC-TCAAGATTTAC-T--GGTAGAAACCCTGTCTGGATATCTTGAGAGA-TTCCCGAAGAGT-CTAACAAGTCCAAGGCATTTGT-CGGCTTCGGCTA--TG-TC---T
gi|6 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTG-C-ATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTA
gi|4 : gtaccgacaataaacggtctattaacgggcattaccgtctgactaaccggcataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgatacgaacggatttgcaccggttacaggactgaaaaacgggtattgatcattcgaaagttagattttatatcatcctcgcagacaattcccattatgcctttaaaatgatggtctacaaatgtttggaaaggaaaaggcaggacacgggaAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCC-ATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAG--AAA
gi|2 : ggctcctgcgatcagtgtatgaagcgtgtaccggacaataaacggtctattaacgggcattaccgtctgactaacggataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgtatacgaacggatttgcaccggttacaggactgacaaaacgggtattgatcattcgaaagtttagattttatatcatcctcgcagacaaattcccattatgcctttaaaatgatggtctacaaatgtttggaaggataaaggcaggacacgggaaAAGGCTACAAGACCCTTATC-TCCTTCCTCAGTC-AGCAACAATGCTGGAGAAGACAAGACCACC----TAAGATTTAC-
gi|3 : gtcacatcctaccggatagcataaagggacatcgcacagatacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaCTATAAGACCCCCACCTC-CTTCTTCTGTC-ATAGACAATGT-CGGGAAGAGCAGAATGCCGCC-CAAGATTCAC-T--GG-------------TAGA-ATGTTGAGA-AATTTCCAAAG-GCTCTAATT-GACCAAGACATTCGTCTG-CTTGAGCGAACTGGTCAAATATACAAA-CATTTGAAA--GTTC---GG-------CGGATATTAACGGGT-------GTGAA----------CTAGTTAAATACAGGAAAAGAAA--C--TATGCGTTC---CGAT-AAAACGCATAACTACCGAAC---------------ATTAAGCGG-ACAA-CAT-GGTC-----CGA-TGGT---------GTCC-G------------TTTCAAGA--------------TTTGAACATGCTA---------AGAACTT--------------TTC---CGCCTGATAAAC-CGGACTTCGCCGG---A---------CAAGGAGCTCGTTGGCTGCAAGAGGAA--CAGACAAGAAACGC----------A-------GAGGACCGGAGAGAA---AC--------------GGACTGACA--C--T-----------T-----------TGTCCGGTAGAGTTGTCCGGTGAGTTGaggta
gi|8 : agACA-AAA-G--TC-AGAAAGTCCAAAGGACACTTACGGATGTGAACTGGTCACATACACAAATATATACAAACTGGACAAATACAGGAAAAGAAA--CG-CATGTGTTC---CGATGAAAACGTAAAAC-AACGCAT-----------TTATAT--A-TAG-ATAC-CGT-GTTCTAAGC--G-GACTACACAT--AGTCCAG------------TG-----T--------------TTTGAACATGCTC---------AAAAC-T--------------TTC---CGCGGGATAGAT-CGGACTTCGTCGG---AC---------AAGGAATGCAGTGGCTACAAAAGAAA--CGGACAAGAAACGC----------A-------GG----CG------A---AC--------------GGATTGACA--A--T----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|9 : ACACAAAAG--TCGGAGA-GTCCAACGGACATT----------AA-TGG----------------ATGCAAACTGGTTAAATACAGGAAAAG-AA-GCG-CATGAGTTT---CGATTAACATGTATAAT-AACGCAG-----------T--------------TAC-CGT-ACACTAAGCGGA-CA----ACAT--AGTCCGG------------TG-----GTCTCCGTTTCAAGTTTTGAACATGCTC---------AACAC-T--------------TTT---CGC----------CGGA----------------------CAAGGAACGCA-TGGCCGCAAGAGAAA--CGGACAAGACATGC----------A-------GA----GG------A---ACGGACACGAATAAATGGACTGACA--A--TTTTCTCATCCGTT-------GGACGTCCGTAAGTATTGTACGGTGAGATGTGA
gi|11 : AATGTAAGCAAAGTGGATATCTACTGCAAAAGAAG--TG-CATGCGTTA---CAAACAAAACG-----C-ATCCAAT-----------CT-TTCTAA-GAGGACAT-CTTTGTCC---GTTGGTGGC----CGT--CCTCAAG------------TT---------------------TTGAACATGCTC----------AAAC-T--------------TCC---CATTGGATAGAA-CGGAT-------G---AT------------GACTGTAATCATCAGATGATAAT--CGGACA--AAACGCGATCG-----A-------GA----CG------A---AC--------------AAATTGAAA--A--T----------GTT-------TT-TGTCCGTTGGCA--AT---TTGCGGTGAGAtt
gi|7 : cAAATACTGGGG--GAAATACGGCATGAGTTTGCTCGAGCACAATGTAAAAC----GCATATCATTATACGCT-TATTCA-CAG-AAACATGT-ATTCTAAGT--G-GACTGTACATTAAGTCCGGCAGTGTCCCGTATTTCAA-G--------------TTTAAACATGCTCGTATATACAGAAAC-TACCAAAACACTATATTCCATCACGTAAAAGATCCGG--TTCCCCAGACAAC--------TAAAGAA------GGCTGTAAAGCGAACCCGCAGAAG-AACGG----------A-------GA----CA------A---AG--------------GGATTGACA--A--T----------t
gi|11 : caaaatcaagttccaaaaaaaagttcccgagaactctgggccaaataaccaagtaaatctctaagcaa-----G--------------TTTGAGCATGTTC---------AAAAC-T--------------T
gi|19 : caatgtaagcaaagtggatatctactgcaaaagaagtgcatgcgttacaaacaaaacgcatccaatctttctaagaggacatctttgtccgttggtggccgtcctc--------------TTGGAACTTGCTC---------AAAAC-T--------------TTC---Cttcccattggatagaacggatgatgactgtaatcatcagatgataatcggacaaaacgcgatcgagacgaacaaattgaaaatgtttttgtccgttggcaatttgcggtgagat
gi|17 : ggaactatgcaaacgcccagctagcgtcgactaaacggacactttagtccgatggtgttcatttaaaatAAC-T--------------TTC---CGCCGGGTAGAC-CGGACTTCGCCGG---AC---------AACGAAGGTGTTGGCTGCAAGAGAAA--CAAACAAGAAACGC----------AGAGAAACGG----AG------AGAGAC--------------GGATTGACATTT--T----------GTT-------TGATatcgttgga
gi|14 : ATAGAT-TGGACTTTGCACG---ACAAGGAAGGCAAGGAAGGCGCTGGCCA-AAGAGAAA--CGGTCAAGAAACGCCAAGGAACGGA-------GA----CG------A---AC--------------GGATTGACAT-ATTT----------GTTATCCGTAGGACGTCCGTGGGCGTCATCCGGTGACGTGTAAag
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): AGTTCACACCTCACAGGATAGCTTAAATGGGCATAGCACAAATGAAAATAGTGGTGACATAATGTTGTTCATTGGATTCCGTTGATGAAGTTCGTTCCAGCTTCTGTTCAGAGCTTTGTGATCGATATATGAAGCGTATGAAGTTTCATCGGTGCATAAAACGCATAATAACCGCATAATTACTAACAATGTACCGGACAATTAATCTTAGCGCACAATACCGTTTTCAAAACGGACAAGTACTGAATGAAACAGACGTGGGACGCATCGAGAAACTGATACAAGGTTCTTTCAACGTTAGACGAACGGATTTGTACCAGCTTCGTGACTGACAAAGGGGGGATCATTCGAAAGT
Unaligned ( gi|10 ): GCAGTCCACACCTTCTGGATACGCATAACGGGACGTCGCAAACGAAATAAAAATATTGTCAGATATGCCGTCTGTTGATTCTGTAAATGAAAAGTCATTCCTGCTGCCGCTGGCTCGGTCCCCTGCATCGGTGATGAAGCGTATATTGCACAATACCGCACGATTACTAGCCATGTACCGGGCACTTAAGGGTCTGTAGCGACATACCGTCGAATATAATTCAATACCGGAGGAACGAACTTGGTGCGCACAGAAACGGTA
Unaligned ( gi|12 ): AGTTGCCATATCTCAGCAGATAGCAAAAGCGGACGTTCCACGGATAATAGCGATTGTGACGTGATGCCGTTCGTTGATGAATATCATTCCCGCAATTGTTTGTGACTCCTGCGATCGGTGAATGAAGCGCGAAGAACGCTTATTAACCGCACGATTAAAAGACATGTACCAGGCAATTA
Unaligned ( gi|15 ): AATTAGTCAACACCTTCCTGAATAAACATAAATGGATATTGCATGAAATACAATAATTGCGACATAATGGGTCCGTTGATGAATAGTCGTTCTGCCGCTGCTTCCGGCTAGGCTCCTG
Unaligned ( gi|16 ): ATTAGTCACACCTTCCTGAATAACATAAATGGATATTGCATGAAATAAAAATAATTGCGACATAATGGTGTCCGTTGATGAAAGTCGTTCCTGCCGCTGCTCCGGCTAGGCTCCTG
Unaligned ( gi|18 ): AGGAACAGTACGTCACATCTTACCGGATAACACAAATGGACACTGTACGGATAAATATAATTGTGACATAAATGCTATCCGCTGATGAAAGTCATTCCCGACTCTGTTCCG
Unaligned ( gi|20 ): AGCAATGGTAAAATTAGGTGCCTAGGAACAGTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 33 1 11 1 222 2 1 9999999999999999999999999999999999999 111 444444444444444444444 00000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222 22222222222222 33333333333333 11111 3333333333 111111111111 22222222222222 444444444444444444444444
lowQualScore : 7 2 4 7 0 3 1 888 7 1 88 7 2 88 1 0 6 6 1 88 5 111 2 0 22 0 0000000000000000000000000000000000000 222 22 0 1 6 6 3 111 9 1 3 666 1 333333333333333333333 3 777 5 55555555555555555555555555555555555555555555555555555555555555555555555555555 3333333333 5 99999999999999 888 66 0 0 0 1 33333333333333 00000 66 5 4444444444 555555555555 99999999999999 5 111111111111111111111111 0
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . .. . ... . . .. . ..................................... ... .. . . . . . ... . . . ... . ..................... . ... . ............................................................................. .......... . .............. ... .. . . . . .............. ..... .. . .......... ............ .............. . ........................ .
lowQualScore : 3 3 8 3 8 2 0 555 3 0 77 3 0 33 0 7 7 7 0 00 0 555 5 0 55 0 5555555555555555555555555555555555555 888 44 6 0 7 7 7 777 3 7 3 888 0 777777777777777777777 7 555 7 33333333333333333333333333333333333333333333333333333333333333333333333333333 0000000000 0 44444444444444 888 00 1 1 2 4 00000000000000 00000 44 0 4444444444 222222222222 44444444444444 7 000000000000000000000000 4
consensus : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA--ATTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCGGAAA-GTCCAAAGGACACT--CGGATGT-AACTGGTCACATACGCGAATGTATGCAAACTGGATAAATACAGGAAAAGAAA-CG-CATGCGTTC---CGATNAAAACGTAAAAC-ANCGCATC-TTA-----TTA---ACA-GACA-C-CGTGTTC-TAAGC-GGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
Reference ( family-3373 ) : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGTCATCGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGG--GAAACCCTGTCTGGATATNTTGAGAGAATTCCCGAAGAGCTCTAACNAGNCCAAGGCATTCGTCCGGCTTCGGCNAACTGGTCAAATACACAAA-GTCGAAAA-GTCCAA-GGACACT--CGGATGT-AACTGGT-------GCGAATGTATGCAAACTGGNTAAATACAGGAAAAGAAA-CG-CATGCGTTC---CGATCAAAACGTANAAC-ANCGCATC-TTA-----TTA---ACA-GACA-C-CGTGTTC-TAAGC-GGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
gi|1 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTACGAG--AAAACCCTGTCTGGATATCTTGAGA--ATTCCCGAAGAGTCCTAACAAGTCCAAGGCATTTGTCCGGCTTCGGCTA--TG-TC---TACACAAA-GTCGAAAAAGTCCAAAGGACACTA-CGGATGT-AACTGGTCACATACACAAATATATACAACCTGGACAAATACAGGAAAAGAAAACG-CATGTGTTC---CGATGAAAACGTAAAAC-AACGCATT-TTA-----TTA---ATA-GATA-C-CGTGTTC-TAAGCCGAGAC--T--ACACA-T--AGTCCAG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---AC--------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|11 : AATGTAAGCAAAGTGGATATCTACTGCAAAAGAAG-TG-CATGCGTTA---CAAACAAAACG-----C-ATCCAATC-TTT-----CTA---AGAGGACATC-TTTGTCCGTTGGT-GG--C------CG---T--CCTCAAG------------T----------------------TTT------------GAACATGCTC----------AAAC-T--------------TCCCATTGGAT---AGAA-CGGAT-------G---AT------------GACTGTAATCATCAG-ATGATAA-TCGGACA--AAACGCGATCG-----AGA----CG------AAC--------------AAATTGAAA-AT----------GTT-------TT-TGTCCGTTGGCAATTTGCGGTGAGAT
gi|13 : cAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGAG-ATTCCCGAAGAG-TCTAACAAGTCCAAGGCATTTGT-CGGCTTCGGCTA
gi|14 : AT---AGAT-TGGACTTTGCACG---ACAAGGAAGGCAAGGAAGGCGCTGGCCA--AAGAGAA-ACGGTCAAGAAACGCCAAGGAACGGAGA----CG------AAC--------------GGATTGACATATTT--------GTTATCCGTAGGACGTCCGTGGGCGTCATCCGGTGACGTGTAAtgtct
gi|17 : AAC-T--------------TTCCGCCGGGT---AGAC-CGGACTTCGCCGG---AC---------AACGAAGGTGTTGGCTGC-AAGAGAA-ACAAACAAGAAACGC----------AGA----GA------AAC--------------GGA
gi|18 : GTCCATTTGTGTTATCCGGTAAGATGTGACgagagacggattgacattttgtttgatag
gi|19 : aggaacagtacC-TAAAC-GG--------ACACTTT--AGTCCGA------------TGGT----G--------------TTCATTTAAAATTTGGAACTTGCTC---------AAAAC-T--------------TTCCATCGactgtacggataaatataattgtgacataaatgctatccgctgatgaaagtcattcccgactctgttccg
gi|2 : ggaactatgcaaacgcccagctagcgtcgaAAGGCTACAAGACCCTTATCTC-CTTCCTCAGTCAGCAACAATGCTGGAGAAGACAAGACCACC----TAAGATTTACAGG--ttgga
gi|3 : gtcacatcctaccggatagcataaagggacatcgcacagatacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaCTATAAGACCCCCACCTC-CTTCTTCTGTCATAGACAATG-TCGGGAAGAGCAGAATGCCGCC-CAAGATTCACTGG-------------TAGA-ATGTTGAGA-AATTTCCAAAG-GCTCTAATT-GACCAAGACATTCGTCTG-CTTGAGCGAACTGGTCAAATATACAAACATTTGAAA-GTTC---GG-------CGGATATTAACGGGT-------GTGAA----------CTAGTTAAATACAGGAAAAGAAA-C--TATGCGTTC---CGAT-AAAACGCATAACTACCGAACA-TTA-------A---GCG-GACA-A-CATGGTC-CGA-T-GG--------------T---GTCCGT------------T--TCAAGA--------------TTT------------GAACATGCTA---------AGAACTT--------------TTCCGCCTGAT---AAAC-CGGACTTCGCCGG---A---------CAAGGAGCTCGTTGGCTGC-AAGAGGA-ACAGACAAGAAACGC----------AGAGGACCGGAGAGAAAC--------------GGACTGACA-CT-----------TT-----------GTCCGGTAGAGTTGTCCGGTGAGTTGta
gi|4 : agAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAA
gi|6 : ggctcctgcgatcagtgtatgaagcgtgtaccggacaataaacggtctattaacgggcattaccgtctgactaacggataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgtatacgaacggatttgcaccggttacaggactgacaaaacgggtattgatcattcgaaagtttagattttatatcatcctcgcagacaaattcccattatgcctttaaaatgatggtctacaaatgtttggaaggataaaggcaggacacgggaaAAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTA
gi|7 : gtaccgacaataaacggtctattaacgggcattaccgtctgactaaccggcataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgatacgaacggatttgcaccggttacaggactgaaaaacgggtattgatcattcgaaagttagattttatatcatcctcgcagacaattcccattatgcctttaaaatgatggtctacaaatgtttggaaaggaaaaggcaggacacgggaAAATACTGGGGGAAATA-CGGCATGAGTTTGCTCGAGCACAATGTAAAAC--GCATATCATTATACGCTTATTCACA-GAAA-CATGTATTC-TAAGT--GGACTGT--ACA---TTAAGTCCGGCAGTGTCCCGTAT--TTCAAG--------------TTT------------AAACATGCTCGTATATACAGAAAC-TACCAAAACACTATATTCCATCACGTAAAAGATCCGG--TTCCCCAGACAAC--------TAAAGAA------GGCTGTAAAGCGAACCCGCAGAAG-AACGG----------AGA----CA------AAG--------------GGATTGACA-AT----------
gi|8 : caaaatcaagttccaaaaaaaagttcccgagaactctgggccaaataaccaagtaaatctctaagcaaACA-AAA-GTCAGAAA-GTCCAAAGGACACTTACGGATGTGAACTGGTCACATACACAAATATATACAAACTGGACAAATACAGGAAAAGAAA-CG-CATGTGTTC---CGATGAAAACGTAAAAC-AACGCAT--TTA-----TAT---ATA-GATA-C-CGTGTTC-TAAGC--GGAC--TACACA---T--AGTCCAG------------T--G----T--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---A---------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|9 : ACACAAAAGTCGGAGA-GTCCAACGGACATT---------------------------AATGGATGCAAACTGGTTAAATACAGGAAAAGAAG-CG-CATGAGTTT---CGATTAACATGTATAAT-AACGCA-----G-----TT-----------A-C-CGTACAC-TAAGC--GGAC--A--ACA---T--AGTCCGG------------T--G----GTCTCCGTTTCAAGTTTT------------GAACATGCTC---------AACAC-T--------------TTTCGCCGGA-----------------------------------CAAGGAACGC-ATGGCCGC-AAGAGAA-ACGGACAAGACATGC----------AGA----GG------AACGGACACGAATAAATGGACTGACA-ATTTTCTCATCCGTT-------GGACGTCCGTAAGTATTGTACGGTGAGATGTGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGTTCACACCTCACAGGATAGCTTAAATGGGCATAGCACAAATGAAAATAGTGGTGACATAATGTTGTTCATTGGATTCCGTTGATGAAGTTCGTTCCAGCTTCTGTTCAGAGCTTTGTGATCGATATATGAAGCGTATGAAGTTTCATCGGTGCATAAAACGCATAATAACCGCATAATTACTAACAATGTACCGGACAATTAATCTTAGCGCACAATACCGTTTTCAAAACGGACAAGTACTGAATGAAACAGACGTGGGACGCATCGAGAAACTGATACAAGGTTCTTTCAACGTTAGACGAACGGATTTGTACCAGCTTCGTGACTGACAAAGGGGGGATCATTCGAAAGT
Unaligned ( gi|10 ): GCAGTCCACACCTTCTGGATACGCATAACGGGACGTCGCAAACGAAATAAAAATATTGTCAGATATGCCGTCTGTTGATTCTGTAAATGAAAAGTCATTCCTGCTGCCGCTGGCTCGGTCCCCTGCATCGGTGATGAAGCGTATATTGCACAATACCGCACGATTACTAGCCATGTACCGGGCACTTAAGGGTCTGTAGCGACATACCGTCGAATATAATTCAATACCGGAGGAACGAACTTGGTGCGCACAGAAACGGTA
Unaligned ( gi|12 ): AGTTGCCATATCTCAGCAGATAGCAAAAGCGGACGTTCCACGGATAATAGCGATTGTGACGTGATGCCGTTCGTTGATGAATATCATTCCCGCAATTGTTTGTGACTCCTGCGATCGGTGAATGAAGCGCGAAGAACGCTTATTAACCGCACGATTAAAAGACATGTACCAGGCAATTA
Unaligned ( gi|15 ): AATTAGTCAACACCTTCCTGAATAAACATAAATGGATATTGCATGAAATACAATAATTGCGACATAATGGGTCCGTTGATGAATAGTCGTTCTGCCGCTGCTTCCGGCTAGGCTCCTG
Unaligned ( gi|16 ): ATTAGTCACACCTTCCTGAATAACATAAATGGATATTGCATGAAATAAAAATAATTGCGACATAATGGTGTCCGTTGATGAAAGTCGTTCCTGCCGCTGCTCCGGCTAGGCTCCTG
Unaligned ( gi|20 ): AGCAATGGTAAAATTAGGTGCCTAGGAACAGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 2222 222 2 11 666666666666666666666666666 111 44444444444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222 22222222222222 33333333333333 11111 3333333333 111111111111 22222222222222 444444444444444444444444
lowQualScore : 7 3 7 0 3 1 0 3 6 777 7 2 7 0 6 6 4444 111 2 0 00 3 3 3 0 222222222222222222222222222 22 1 1 6 6 3 111 7 1 3 77 3 44444444444444444444444 3 777 5 222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333333 5 99999999999999 888 66 0 0 0 1 33333333333333 00000 66 5 4444444444 555555555555 99999999999999 5 111111111111111111111111 0
lowQualScore : . . . . . . . . . ... . . . . . . .... ... . . .. . . . . ........................... .. . . . . . ... . . . .. . ....................... . ... . .............................................................................. .......... . .............. ... .. . . . . .............. ..... .. . .......... ............ .............. . ........................ .
lowQualScore : 3 7 3 8 2 0 8 2 7 777 3 0 3 7 7 7 0000 555 5 0 22 2 0 2 2 000000000000000000000000000 00 0 4 7 7 7 777 5 7 7 77 3 33333333333333333333333 7 555 7 111111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000 0 44444444444444 888 00 1 1 2 4 00000000000000 00000 44 0 4444444444 222222222222 44444444444444 7 000000000000000000000000 4
consensus : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAAC-AACGCAT-----------CTTATTAACA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
Reference ( family-3373 ) : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACGCGAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAAC-ANCGCAT-----------CTTATTAACA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
gi|1 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGC-ATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTACGAG--AAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGTCCTAACAAGTCCAAGGCATTTGTCCGGCTTCGGCTA--T-GTC---TACACAAA-GTCGAAAAAGTCCAAAGGACACTA-CGGATGT-AACTGGTCACATACACAAATATATACAACCTGGACAAATACAGGAAAAGAAAACG-CATGTGTTC---CGATGAAAACGTAAAAC-AACGCAT-----------TTTATTAATA-GATA-C-CGTGTTC-TAAGCCGAGAC--TACACA---T--AGTCCAG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---AC--------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|11 : AATGTAAGCAAAGTGGATATCTACTGCAAAAG-AAGTG-CATGCGTTA---CAAACAAAACG-----C-ATCCAAT-----------CTTTCTAAGAGGACATC-TTTGTCCGTTGG-TGG--C------CG---T--CCTCAAG------------T----------------------TTT------------GAACATGCTC----------AAAC-T--------------TCCCATTGGAT---AGAA-CGGAT-------G---AT------------GACTGTAATCATCAG-ATGATAA-TCGGACA--AAACGCGATCG-----AGA----CG------AAC--------------AAATTGAAA-AT----------GTT-------TT-TGTCCGTTGGCAATTTGCGGTGAGAT
gi|13 : cAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGAGA-TTCCCGAAGAG-TCTAACAAGTCCAAGGCATTTGT-CGGCTTCGGCTA
gi|14 : AT---AGAT-TGGACTTTGCACG---ACAAGGAAGGCAAGGAAGGCGCTGGCCA--AAGAGAA-ACGGTCAAGAAACGCCAAGGAACGGAGA----CG------AAC--------------GGATTGACATATTT--------GTTATCCGTAGGACGTCCGTGGGCGTCATCCGGTGACGTGTAAtgtct
gi|17 : AAC-T--------------TTCCGCCGGGT---AGAC-CGGACTTCGCCGG---AC---------AACGAAGGTGTTGGCTGC-AAGAGAA-ACAAACAAGAAACGC----------AGA----GA------AAC--------------GGA
gi|18 : GTCCATTTGTGTTATCCGGTAAGATGTGACgagagacggattgacattttgtttgatag
gi|19 : aggaacagtacC-TAAA-CGG--------ACACTTT--AGTCCGA------------TGGT----G--------------TTCATTTAAAATTTGGAACTTGCTC---------AAAAC-T--------------TTCCATCGactgtacggataaatataattgtgacataaatgctatccgctgatgaaagtcattcccgactctgttccg
gi|2 : ggaactatgcaaacgcccagctagcgtcgaAAGGCTACAAGACCCTTATCTC-CTTCCTCAGTCAGCAACAATGCTGGAGAAGACAAGACCACC----TAAGATTTACAGGTAttgga
gi|3 : gtcacatcctaccggatagcataaagggacatcgcacagatacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaCTATAAGACCCCCACCTC-CTTCTTCTGTCATAGACAATG-TCGGGAAGAGCAGAATGCCGCC-CAAGATTCACTGGTAGAA--------TG------TTGAGA-AATTTCCAAAG-GCTCTAATT-GACCAAGACATTCGTCTG-CTTGAGCGAACTGGTCAAATATACAAACATTT-GAAAGTTC---GG-------CGGATATTAACGGGT-----------------GTGAACTAGTTAAATACAGGAAAAG-AAAC--TATGCGTTC---CGAT-AAAACGCATAACTACCGAAC-----------ATTA--AGCG-GACA-A-CATGGTC-CGA--TGG--------------T---GTCCGT------------T--TCAAGA--------------TTT------------GAACATGCTA---------AGAACTT--------------TTCCGCCTGAT---AAAC-CGGACTTCGCCGG---A---------CAAGGAGCTCGTTGGCTGC-AAGAGGA-ACAGACAAGAAACGC----------AGAGGACCGGAGAGAAAC--------------GGACTGACA-CT-----------TT-----------GTCCGGTAGAGTTGTCCGGTGAGTTG
gi|4 : agAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAA
gi|6 : ggctcctgcgatcagtgtatgaagcgtgtaccggacaataaacggtctattaacgggcattaccgtctgactaacggataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgtatacgaacggatttgcaccggttacaggactgacaaaacgggtattgatcattcgaaagtttagattttatatcatcctcgcagacaaattcccattatgcctttaaaatgatggtctacaaatgtttggaaggataaaggcaggacacgggaaAAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTA
gi|7 : gtaccgacaataaacggtctattaacgggcattaccgtctgactaaccggcataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgatacgaacggatttgcaccggttacaggactgaaaaacgggtattgatcattcgaaagttagattttatatcatcctcgcagacaattcccattatgcctttaaaatgatggtctacaaatgtttggaaaggaaaaggcaggacacgggaAAATACTGGGGGAA-ATACGGCATGAGTTTGCTCGAGCACAATGTAAAA----CGCATATCATTATACGCTTATTCACA-GAAA-CATGTATTC-TAAG-T-GGACTGT--ACA---TTAAGTCCGGCAGTGTCCCGTAT--TTCAAG--------------TTT------------AAACATGCTCGTATATACAGAAAC-TACCAAAACACTATATTCCATCACGTAAAAGATCCGG--TTCCCCAGACAAC--------TAAAGAA------GGCTGTAAAGCGAACCCGCAGAAG-AACGG----------AGA----CA------AAG--------------GGATTGACA-AT----------
gi|8 : caaaatcaagttccaaaaaaaagttcccgagaactctgggccaaataaccaagtaaatctctaagcaaACA-AAA-GTCA-GAAAGTCCAAAGGACACTTACGGATGTGAACTGGTCACATACACAAATATATACAAACTGGACAAATACAGGAAAAG-AAACG-CATGTGTTC---CGATGAAAACGTAAAAC-AACGCAT------------TTATATATA-GATA-C-CGTGTTC-TAAG-C-GGAC--TACACA---T--AGTCCAG------------T--G----T--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---A---------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|9 : ACACAAAAGTCG-GAGAGTCCAACGGACATT---------------------------AATGGATGCAAACTGGTTAAATACAGGAAAAG-AAGCG-CATGAGTTT---CGATTAACATGTATAAT-AACGCA---------------GTT--------A-C-CGTACAC-TAAG-C-GGAC--A--ACA---T--AGTCCGG------------T--G----GTCTCCGTTTCAAGTTTT------------GAACATGCTC---------AACAC-T--------------TTTCGCCGGA-----------------------------------CAAGGAACGC-ATGGCCGC-AAGAGAA-ACGGACAAGACATGC----------AGA----GG------AACGGACACGAATAAATGGACTGACA-ATTTTCTCATCCGTT-------GGACGTCCGTAAGTATTGTACGGTGAGATGTGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGTTCACACCTCACAGGATAGCTTAAATGGGCATAGCACAAATGAAAATAGTGGTGACATAATGTTGTTCATTGGATTCCGTTGATGAAGTTCGTTCCAGCTTCTGTTCAGAGCTTTGTGATCGATATATGAAGCGTATGAAGTTTCATCGGTGCATAAAACGCATAATAACCGCATAATTACTAACAATGTACCGGACAATTAATCTTAGCGCACAATACCGTTTTCAAAACGGACAAGTACTGAATGAAACAGACGTGGGACGCATCGAGAAACTGATACAAGGTTCTTTCAACGTTAGACGAACGGATTTGTACCAGCTTCGTGACTGACAAAGGGGGGATCATTCGAAAGT
Unaligned ( gi|10 ): GCAGTCCACACCTTCTGGATACGCATAACGGGACGTCGCAAACGAAATAAAAATATTGTCAGATATGCCGTCTGTTGATTCTGTAAATGAAAAGTCATTCCTGCTGCCGCTGGCTCGGTCCCCTGCATCGGTGATGAAGCGTATATTGCACAATACCGCACGATTACTAGCCATGTACCGGGCACTTAAGGGTCTGTAGCGACATACCGTCGAATATAATTCAATACCGGAGGAACGAACTTGGTGCGCACAGAAACGGTA
Unaligned ( gi|12 ): AGTTGCCATATCTCAGCAGATAGCAAAAGCGGACGTTCCACGGATAATAGCGATTGTGACGTGATGCCGTTCGTTGATGAATATCATTCCCGCAATTGTTTGTGACTCCTGCGATCGGTGAATGAAGCGCGAAGAACGCTTATTAACCGCACGATTAAAAGACATGTACCAGGCAATTA
Unaligned ( gi|15 ): AATTAGTCAACACCTTCCTGAATAAACATAAATGGATATTGCATGAAATACAATAATTGCGACATAATGGGTCCGTTGATGAATAGTCGTTCTGCCGCTGCTTCCGGCTAGGCTCCTG
Unaligned ( gi|16 ): ATTAGTCACACCTTCCTGAATAACATAAATGGATATTGCATGAAATAAAAATAATTGCGACATAATGGTGTCCGTTGATGAAAGTCGTTCCTGCCGCTGCTCCGGCTAGGCTCCTG
Unaligned ( gi|20 ): AGCAATGGTAAAATTAGGTGCCTAGGAACAGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 2222 222 2 11 444444444444444444444444444 111 444444444444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222 22222222222222 33333333333333 11111 3333333333 111111111111 22222222222222 444444444444444444444444
lowQualScore : 7 3 7 0 3 1 0 3 6 777 7 2 7 0 6 6 4444 111 2 0 00 3 3 3 0 777777777777777777777777777 22 1 1 6 6 3 111 7 1 3 3 666666666666666666666666 3 777 5 222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333333 5 99999999999999 888 66 0 0 0 1 33333333333333 00000 66 5 4444444444 555555555555 99999999999999 5 111111111111111111111111 0
lowQualScore : . . . . . . . . . ... . . . . . . .... ... . . .. . . . . ........................... .. . . . . . ... . . . . ........................ . ... . .............................................................................. .......... . .............. ... .. . . . . .............. ..... .. . .......... ............ .............. . ........................ .
lowQualScore : 3 7 3 8 2 0 8 2 7 777 3 0 3 7 7 7 0000 555 5 0 22 2 0 2 2 000000000000000000000000000 00 0 4 7 7 7 777 5 7 7 2 222222222222222222222222 7 555 7 111111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000 0 44444444444444 888 00 1 1 2 4 00000000000000 00000 44 0 4444444444 222222222222 44444444444444 7 000000000000000000000000 4
consensus : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAACAACGCAT-----------CTTATTAA-CA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
Reference ( family-3373 ) : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAACAACGCAT-----------CTTATTAA-CA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
gi|1 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGC-ATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTACGAG--AAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGTCCTAACAAGTCCAAGGCATTTGTCCGGCTTCGGCTA--T-GTC---TACACAAA-GTCGAAAAAGTCCAAAGGACACTA-CGGATGT-AACTGGTCACATACACAAATATATACAACCTGGACAAATACAGGAAAAGAAAACG-CATGTGTTC---CGATGAAAACGTAAAACAACGCAT-----------TTTATTAA-TA-GATA-C-CGTGTTC-TAAGCCGAGAC--TACACA---T--AGTCCAG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---AC--------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|11 : AATGTAAGCAAAGTGGATATCTACTGCAAAAG-AAGTG-CATGCGTTA---CAAACAAAACG-----CATCCAAT-----------CTTTCTAA-GAGGACATC-TTTGTCCGTTGG-TGG--C------CG---T--CCTCAAG------------T----------------------TTT------------GAACATGCTC----------AAAC-T--------------TCCCATTGGAT---AGAA-CGGAT-------G---AT------------GACTGTAATCATCAG-ATGATAA-TCGGACA--AAACGCGATCG-----AGA----CG------AAC--------------AAATTGAAA-AT----------GTT-------TT-TGTCCGTTGGCAATTTGCGGTGAGAT
gi|13 : cAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGAGA-TTCCCGAAGAG-TCTAACAAGTCCAAGGCATTTGT-CGGCTTCGGCTA
gi|14 : AT---AGAT-TGGACTTTGCACG---ACAAGGAAGGCAAGGAAGGCGCTGGCCA--AAGAGAA-ACGGTCAAGAAACGCCAAGGAACGGAGA----CG------AAC--------------GGATTGACATATTT--------GTTATCCGTAGGACGTCCGTGGGCGTCATCCGGTGACGTGTAAtgtct
gi|17 : AAC-T--------------TTCCGCCGGGT---AGAC-CGGACTTCGCCGG---AC---------AACGAAGGTGTTGGCTGC-AAGAGAA-ACAAACAAGAAACGC----------AGA----GA------AAC--------------GGA
gi|18 : GTCCATTTGTGTTATCCGGTAAGATGTGACgagagacggattgacattttgtttgatag
gi|19 : aggaacagtacC-TAAA-CGG--------ACACTTT--AGTCCGA------------TGGT----G--------------TTCATTTAAAATTTGGAACTTGCTC---------AAAAC-T--------------TTCCATCGactgtacggataaatataattgtgacataaatgctatccgctgatgaaagtcattcccgactctgttccg
gi|2 : ggaactatgcaaacgcccagctagcgtcgaAAGGCTACAAGACCCTTATCTC-CTTCCTCAGTCAGCAACAATGCTGGAGAAGACAAGACCACC----TAAGATTTACAGGTAttgga
gi|3 : gtcacatcctaccggatagcataaagggacatcgcacagatacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaCTATAAGACCCCCACCTC-CTTCTTCTGTCATAGACAATG-TCGGGAAGAGCAGAATGCCGCC-CAAGATTCACTGGTAGAA--------TG------TTGAGA-AATTTCCAAAG-GCTCTAATT-GACCAAGACATTCGTCTG-CTTGAGCGAACTGGTCAAATATACAAACATTT-GAAAGTTC---GG-------CGGATATTAACGGGT-----------------GTGAACTAGTTAAATACAGGAAAAG-AAAC--TATGCGTTC---CGAT-AAAACGCATAACTACCGAA-----------C--ATTAAGCG-GACA-A-CATGGTC-CGA--TGG--------------T---GTCCGT------------T--TCAAGA--------------TTT------------GAACATGCTA---------AGAACTT--------------TTCCGCCTGAT---AAAC-CGGACTTCGCCGG---A---------CAAGGAGCTCGTTGGCTGC-AAGAGGA-ACAGACAAGAAACGC----------AGAGGACCGGAGAGAAAC--------------GGACTGACA-CT-----------TT-----------GTCCGGTAGAGTTGTCCGGTGAGTTG
gi|4 : agAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAA
gi|6 : ggctcctgcgatcagtgtatgaagcgtgtaccggacaataaacggtctattaacgggcattaccgtctgactaacggataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgtatacgaacggatttgcaccggttacaggactgacaaaacgggtattgatcattcgaaagtttagattttatatcatcctcgcagacaaattcccattatgcctttaaaatgatggtctacaaatgtttggaaggataaaggcaggacacgggaaAAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTA
gi|7 : gtaccgacaataaacggtctattaacgggcattaccgtctgactaaccggcataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgatacgaacggatttgcaccggttacaggactgaaaaacgggtattgatcattcgaaagttagattttatatcatcctcgcagacaattcccattatgcctttaaaatgatggtctacaaatgtttggaaaggaaaaggcaggacacgggaAAATACTGGGGGAA-ATACGGCATGAGTTTGCTCGAGCACAATGTAAA---ACGCATATCATTATACGCTTATTCA-CA-GAAA-CATGTATTC-TAAG-T-GGACTGT--ACA---TTAAGTCCGGCAGTGTCCCGTAT--TTCAAG--------------TTT------------AAACATGCTCGTATATACAGAAAC-TACCAAAACACTATATTCCATCACGTAAAAGATCCGG--TTCCCCAGACAAC--------TAAAGAA------GGCTGTAAAGCGAACCCGCAGAAG-AACGG----------AGA----CA------AAG--------------GGATTGACA-AT----------
gi|8 : caaaatcaagttccaaaaaaaagttcccgagaactctgggccaaataaccaagtaaatctctaagcaaACA-AAA-GTCA-GAAAGTCCAAAGGACACTTACGGATGTGAACTGGTCACATACACAAATATATACAAACTGGACAAATACAGGAAAAG-AAACG-CATGTGTTC---CGATGAAAACGTAAAACAACGCAT------------TTATATA-TA-GATA-C-CGTGTTC-TAAG-C-GGAC--TACACA---T--AGTCCAG------------T--G----T--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---A---------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|9 : ACACAAAAGTCG-GAGAGTCCAACGGACATT---------------------------AATGGATGCAAACTGGTTAAATACAGGAAAAG-AAGCG-CATGAGTTT---CGATTAACATGTATAATAACGCA---------------GTT---------A-C-CGTACAC-TAAG-C-GGAC--A--ACA---T--AGTCCGG------------T--G----GTCTCCGTTTCAAGTTTT------------GAACATGCTC---------AACAC-T--------------TTTCGCCGGA-----------------------------------CAAGGAACGC-ATGGCCGC-AAGAGAA-ACGGACAAGACATGC----------AGA----GG------AACGGACACGAATAAATGGACTGACA-ATTTTCTCATCCGTT-------GGACGTCCGTAAGTATTGTACGGTGAGATGTGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGTTCACACCTCACAGGATAGCTTAAATGGGCATAGCACAAATGAAAATAGTGGTGACATAATGTTGTTCATTGGATTCCGTTGATGAAGTTCGTTCCAGCTTCTGTTCAGAGCTTTGTGATCGATATATGAAGCGTATGAAGTTTCATCGGTGCATAAAACGCATAATAACCGCATAATTACTAACAATGTACCGGACAATTAATCTTAGCGCACAATACCGTTTTCAAAACGGACAAGTACTGAATGAAACAGACGTGGGACGCATCGAGAAACTGATACAAGGTTCTTTCAACGTTAGACGAACGGATTTGTACCAGCTTCGTGACTGACAAAGGGGGGATCATTCGAAAGT
Unaligned ( gi|10 ): GCAGTCCACACCTTCTGGATACGCATAACGGGACGTCGCAAACGAAATAAAAATATTGTCAGATATGCCGTCTGTTGATTCTGTAAATGAAAAGTCATTCCTGCTGCCGCTGGCTCGGTCCCCTGCATCGGTGATGAAGCGTATATTGCACAATACCGCACGATTACTAGCCATGTACCGGGCACTTAAGGGTCTGTAGCGACATACCGTCGAATATAATTCAATACCGGAGGAACGAACTTGGTGCGCACAGAAACGGTA
Unaligned ( gi|12 ): AGTTGCCATATCTCAGCAGATAGCAAAAGCGGACGTTCCACGGATAATAGCGATTGTGACGTGATGCCGTTCGTTGATGAATATCATTCCCGCAATTGTTTGTGACTCCTGCGATCGGTGAATGAAGCGCGAAGAACGCTTATTAACCGCACGATTAAAAGACATGTACCAGGCAATTA
Unaligned ( gi|15 ): AATTAGTCAACACCTTCCTGAATAAACATAAATGGATATTGCATGAAATACAATAATTGCGACATAATGGGTCCGTTGATGAATAGTCGTTCTGCCGCTGCTTCCGGCTAGGCTCCTG
Unaligned ( gi|16 ): ATTAGTCACACCTTCCTGAATAACATAAATGGATATTGCATGAAATAAAAATAATTGCGACATAATGGTGTCCGTTGATGAAAGTCGTTCCTGCCGCTGCTCCGGCTAGGCTCCTG
Unaligned ( gi|20 ): AGCAATGGTAAAATTAGGTGCCTAGGAACAGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 2222 222 2 11 444444444444444444444444444 111 444444444444444444444444 000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222 22222222222222 33333333333333 11111 3333333333 111111111111 22222222222222 444444444444444444444444
lowQualScore : 7 3 7 0 3 1 0 3 6 777 7 2 7 0 6 6 4444 111 2 0 00 3 3 3 0 777777777777777777777777777 22 1 1 6 6 3 111 7 1 3 3 666666666666666666666666 3 777 5 222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333333 5 99999999999999 888 66 0 0 0 1 33333333333333 00000 66 5 4444444444 555555555555 99999999999999 5 111111111111111111111111 0
lowQualScore : . . . . . . . . . ... . . . . . . .... ... . . .. . . . . ........................... .. . . . . . ... . . . . ........................ . ... . .............................................................................. .......... . .............. ... .. . . . . .............. ..... .. . .......... ............ .............. . ........................ .
lowQualScore : 3 7 3 8 2 0 8 2 7 777 3 0 3 7 7 7 0000 555 5 0 22 2 0 2 2 000000000000000000000000000 00 0 4 7 7 7 777 5 7 7 2 222222222222222222222222 7 555 7 111111111111111111111111111111111111111111111111111111111111111111111111111111 0000000000 0 44444444444444 888 00 1 1 2 4 00000000000000 00000 44 0 4444444444 222222222222 44444444444444 7 000000000000000000000000 4
consensus : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAACAACGCAT-----------CTTATTAA-CA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
Reference ( family-3373 ) : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAACAACGCAT-----------CTTATTAA-CA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
gi|1 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGC-ATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTACGAG--AAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGTCCTAACAAGTCCAAGGCATTTGTCCGGCTTCGGCTA--T-GTC---TACACAAA-GTCGAAAAAGTCCAAAGGACACTA-CGGATGT-AACTGGTCACATACACAAATATATACAACCTGGACAAATACAGGAAAAGAAAACG-CATGTGTTC---CGATGAAAACGTAAAACAACGCAT-----------TTTATTAA-TA-GATA-C-CGTGTTC-TAAGCCGAGAC--TACACA---T--AGTCCAG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---AC--------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|11 : AATGTAAGCAAAGTGGATATCTACTGCAAAAG-AAGTG-CATGCGTTA---CAAACAAAACG-----CATCCAAT-----------CTTTCTAA-GAGGACATC-TTTGTCCGTTGG-TGG--C------CG---T--CCTCAAG------------T----------------------TTT------------GAACATGCTC----------AAAC-T--------------TCCCATTGGAT---AGAA-CGGAT-------G---AT------------GACTGTAATCATCAG-ATGATAA-TCGGACA--AAACGCGATCG-----AGA----CG------AAC--------------AAATTGAAA-AT----------GTT-------TT-TGTCCGTTGGCAATTTGCGGTGAGAT
gi|13 : cAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGAGA-TTCCCGAAGAG-TCTAACAAGTCCAAGGCATTTGT-CGGCTTCGGCTA
gi|14 : AT---AGAT-TGGACTTTGCACG---ACAAGGAAGGCAAGGAAGGCGCTGGCCA--AAGAGAA-ACGGTCAAGAAACGCCAAGGAACGGAGA----CG------AAC--------------GGATTGACATATTT--------GTTATCCGTAGGACGTCCGTGGGCGTCATCCGGTGACGTGTAAtgtct
gi|17 : AAC-T--------------TTCCGCCGGGT---AGAC-CGGACTTCGCCGG---AC---------AACGAAGGTGTTGGCTGC-AAGAGAA-ACAAACAAGAAACGC----------AGA----GA------AAC--------------GGA
gi|18 : GTCCATTTGTGTTATCCGGTAAGATGTGACgagagacggattgacattttgtttgatag
gi|19 : aggaacagtacC-TAAA-CGG--------ACACTTT--AGTCCGA------------TGGT----G--------------TTCATTTAAAATTTGGAACTTGCTC---------AAAAC-T--------------TTCCATCGactgtacggataaatataattgtgacataaatgctatccgctgatgaaagtcattcccgactctgttccg
gi|2 : ggaactatgcaaacgcccagctagcgtcgaAAGGCTACAAGACCCTTATCTC-CTTCCTCAGTCAGCAACAATGCTGGAGAAGACAAGACCACC----TAAGATTTACAGGTAttgga
gi|3 : gtcacatcctaccggatagcataaagggacatcgcacagatacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaCTATAAGACCCCCACCTC-CTTCTTCTGTCATAGACAATG-TCGGGAAGAGCAGAATGCCGCC-CAAGATTCACTGGTAGAA--------TG------TTGAGA-AATTTCCAAAG-GCTCTAATT-GACCAAGACATTCGTCTG-CTTGAGCGAACTGGTCAAATATACAAACATTT-GAAAGTTC---GG-------CGGATATTAACGGGT-----------------GTGAACTAGTTAAATACAGGAAAAG-AAAC--TATGCGTTC---CGAT-AAAACGCATAACTACCGAA-----------C--ATTAAGCG-GACA-A-CATGGTC-CGA--TGG--------------T---GTCCGT------------T--TCAAGA--------------TTT------------GAACATGCTA---------AGAACTT--------------TTCCGCCTGAT---AAAC-CGGACTTCGCCGG---A---------CAAGGAGCTCGTTGGCTGC-AAGAGGA-ACAGACAAGAAACGC----------AGAGGACCGGAGAGAAAC--------------GGACTGACA-CT-----------TT-----------GTCCGGTAGAGTTGTCCGGTGAGTTG
gi|4 : agAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAA
gi|6 : ggctcctgcgatcagtgtatgaagcgtgtaccggacaataaacggtctattaacgggcattaccgtctgactaacggataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgtatacgaacggatttgcaccggttacaggactgacaaaacgggtattgatcattcgaaagtttagattttatatcatcctcgcagacaaattcccattatgcctttaaaatgatggtctacaaatgtttggaaggataaaggcaggacacgggaaAAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTA
gi|7 : gtaccgacaataaacggtctattaacgggcattaccgtctgactaaccggcataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgatacgaacggatttgcaccggttacaggactgaaaaacgggtattgatcattcgaaagttagattttatatcatcctcgcagacaattcccattatgcctttaaaatgatggtctacaaatgtttggaaaggaaaaggcaggacacgggaAAATACTGGGGGAA-ATACGGCATGAGTTTGCTCGAGCACAATGTAAA---ACGCATATCATTATACGCTTATTCA-CA-GAAA-CATGTATTC-TAAG-T-GGACTGT--ACA---TTAAGTCCGGCAGTGTCCCGTAT--TTCAAG--------------TTT------------AAACATGCTCGTATATACAGAAAC-TACCAAAACACTATATTCCATCACGTAAAAGATCCGG--TTCCCCAGACAAC--------TAAAGAA------GGCTGTAAAGCGAACCCGCAGAAG-AACGG----------AGA----CA------AAG--------------GGATTGACA-AT----------
gi|8 : caaaatcaagttccaaaaaaaagttcccgagaactctgggccaaataaccaagtaaatctctaagcaaACA-AAA-GTCA-GAAAGTCCAAAGGACACTTACGGATGTGAACTGGTCACATACACAAATATATACAAACTGGACAAATACAGGAAAAG-AAACG-CATGTGTTC---CGATGAAAACGTAAAACAACGCAT------------TTATATA-TA-GATA-C-CGTGTTC-TAAG-C-GGAC--TACACA---T--AGTCCAG------------T--G----T--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCGGGAT---AGAT-CGGACTTCGTCGG---A---------CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AGG----CG------AAC--------------GGATTGACA-AT----------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|9 : ACACAAAAGTCG-GAGAGTCCAACGGACATT---------------------------AATGGATGCAAACTGGTTAAATACAGGAAAAG-AAGCG-CATGAGTTT---CGATTAACATGTATAATAACGCA---------------GTT---------A-C-CGTACAC-TAAG-C-GGAC--A--ACA---T--AGTCCGG------------T--G----GTCTCCGTTTCAAGTTTT------------GAACATGCTC---------AACAC-T--------------TTTCGCCGGA-----------------------------------CAAGGAACGC-ATGGCCGC-AAGAGAA-ACGGACAAGACATGC----------AGA----GG------AACGGACACGAATAAATGGACTGACA-ATTTTCTCATCCGTT-------GGACGTCCGTAAGTATTGTACGGTGAGATGTGA
blockSeqs : T C T C T T A G GA A C A C G ACTG AAA C C T A A A TACGGATGTGAACTGGTCACATACACA GT A A . G C GCT C C T A TATCATTATACGCTTATTCACA C TC G TGGACTGTACATTAAGTCCGGCAGTGTCCCGTATTTCAAGTTT GTATATACAG T ACCAAAACACTATA AAA TC C ACAAGGAAGGC TGTAA TA C CAAGGAACGG GGACCGGAGAGA GGACACGAATAAAT T TTTCTCATCCGTTGGAC
blockSeqs : T T T C T A A . AA . . . . . C A A A C A CGGATATTAACGGGT AT T T . . C . C T A A TCTTTCTAAGAG C CA . CGGACACTTTAGTCCGATGGTGTTCATTTAAAATTTG A . . . A G ACAACT GGCGC G . GATCG CG . . TTGTTATCCGTAGGAC
blockSeqs : T T T . T T . . . G . . . . GG T A . . A . G T A A ACATTAAGCG A A . CGGACAACATAGTCCGGTGGTCTCCGTTTCAAGTTTT A . . . T G AT GGTGT C . . CG . . GTTGGAT
blockSeqs : . C T . . T . . T . . T . T T T . TTTATATATA T C . CGGACTACACATAGTCCAGTGTTTT A . . . C A AC CTCGT C . . GA . . GTTTTT
blockSeqs : . . . . . . . A . . . . . GTT . C . TGGTGTCCGTTTCAAGATTT A . . . C G AC TGCAG C . . CA . . TT
blockSeqs : . TGGCCGTCCTCAAGTTTT . . . . T . AC CGCA C . . CG . .
blockSeqs : . . . . . C . . . . GG .
blockSeqCons : TTTATATANG************** AC************ TTGTTGGAC***************
originalCons : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAACAACGCAT-----------CTTATTAA-CA-GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGG---AC--------CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-AT----------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
finalCons : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTAAAACAACGCATTTATATANG--------------GACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------TTT------------GAACATGCTC---------AAAAC-T--------------TTCCGCCGGAT---AGAT-CGGACTTCGCCGGAC------------AAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AGA----CG------AAC--------------GGATTGACA-ATTTGTTGGAC---------------GTCCGTTAGCGTTATCCGGTGAGGTGTGAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGTTCACACCTCACAGGATAGCTTAAATGGGCATAGCACAAATGAAAATAGTGGTGACATAATGTTGTTCATTGGATTCCGTTGATGAAGTTCGTTCCAGCTTCTGTTCAGAGCTTTGTGATCGATATATGAAGCGTATGAAGTTTCATCGGTGCATAAAACGCATAATAACCGCATAATTACTAACAATGTACCGGACAATTAATCTTAGCGCACAATACCGTTTTCAAAACGGACAAGTACTGAATGAAACAGACGTGGGACGCATCGAGAAACTGATACAAGGTTCTTTCAACGTTAGACGAACGGATTTGTACCAGCTTCGTGACTGACAAAGGGGGGATCATTCGAAAGT
Unaligned ( gi|10 ): GCAGTCCACACCTTCTGGATACGCATAACGGGACGTCGCAAACGAAATAAAAATATTGTCAGATATGCCGTCTGTTGATTCTGTAAATGAAAAGTCATTCCTGCTGCCGCTGGCTCGGTCCCCTGCATCGGTGATGAAGCGTATATTGCACAATACCGCACGATTACTAGCCATGTACCGGGCACTTAAGGGTCTGTAGCGACATACCGTCGAATATAATTCAATACCGGAGGAACGAACTTGGTGCGCACAGAAACGGTA
Unaligned ( gi|12 ): AGTTGCCATATCTCAGCAGATAGCAAAAGCGGACGTTCCACGGATAATAGCGATTGTGACGTGATGCCGTTCGTTGATGAATATCATTCCCGCAATTGTTTGTGACTCCTGCGATCGGTGAATGAAGCGCGAAGAACGCTTATTAACCGCACGATTAAAAGACATGTACCAGGCAATTA
Unaligned ( gi|15 ): AATTAGTCAACACCTTCCTGAATAAACATAAATGGATATTGCATGAAATACAATAATTGCGACATAATGGGTCCGTTGATGAATAGTCGTTCTGCCGCTGCTTCCGGCTAGGCTCCTG
Unaligned ( gi|16 ): ATTAGTCACACCTTCCTGAATAACATAAATGGATATTGCATGAAATAAAAATAATTGCGACATAATGGTGTCCGTTGATGAAAGTCGTTCCTGCCGCTGCTCCGGCTAGGCTCCTG
Unaligned ( gi|20 ): AGCAATGGTAAAATTAGGTGCCTAGGAACAGTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 2222 222 2 11 444444444444444444444444444 111 111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222 22222222222222 11111111 5555555555555555555555555555555555555555555555 3333333333333333333
lowQualScore : 7 3 7 0 3 1 0 3 6 777 7 2 7 0 6 6 4444 111 2 0 00 3 3 3 0 777777777777777777777777777 22 1 1 6 6 3 111 7 111 777 2 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333 99999999999999 5 1 888 88 22 5 88888888 5 8 33 66 5 1111111111111111111111111111111111111111111111 4444 0000000000000000000 2 1 1
lowQualScore : . . . . . . . . . ... . . . . . . .... ... . . .. . . . . ........................... .. . . . . . ... . ... ... . .................................................................................................................................... .......... .............. . . ... .. .. . ........ . . .. .. . .............................................. .... ................... . . .
lowQualScore : 3 7 3 8 2 0 8 2 7 777 3 0 3 7 7 7 0000 555 5 0 22 2 0 2 2 000000000000000000000000000 00 0 4 7 7 7 777 5 777 888 5 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0000000000 44444444444444 0 4 888 99 66 0 11111111 0 5 22 44 0 6666666666666666666666666666666666666666666666 8888 4444444444444444444 7 2 1
consensus : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTA---AAACAACGCAT----TT-TA-----------ACGGACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------T------------TT------------GAACATGCTC---------AAAACT--------------TT-CCGCCGGAT---AGAT-CGGACTTCGC-CG--------GA-CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AG----A----CG------AAC--------------GGATTGACA-ATTT--------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
Reference ( family-3373 ) : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCGCCTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGCTCTAACAAGTCCAAGGCATTCGTCCGGCTTCGGCTAACTGGTCAAATACACAAA-GTCG-GAAAGTCCAAAGGACACT--CGGATGT-AACTGGTCACATACACAAATGTATGCAAACTGGATAAATACAGGAAAAG-AAACG-CATGCGTTC---CGATNAAAACGTA---AAACAACGCAT----TTATA--------T--ANGGACA-C-CGTGTTC-TAAG-CGGGAC--T--ACA---T--AGTCCGG------------T--T----G--------------T------------TT------------GAACATGCTC---------AAAACT--------------TT-CCGCCGGAT---AGAT-CGGACTTCGC-CG--------GA-CAAGGAACGCGNTGGCCGC-AAGAGAA-ACGGACAAGAAACGC----------AG----A----CG------AAC--------------GGATTGACA-ATTT--------GTT-------GGACGTCCGTTAGCGTTATCCGGTGAGGTGTGAC
gi|1 : AAGACTACAAGGCCTTCACCTTTCTTCCTCTGC-ATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTACGAG--AAAACCCTGTCTGGATATCTTGAGA-A-TTCCCGAAGAGTCCTAACAAGTCCAAGGCATTTGTCCGGCTTCGGCTA--T-GTC---TACACAAA-GTCGAAAAAGTCCAAAGGACACTA-CGGATGT-AACTGGTCACATACACAAATATATACAACCTGGACAAATACAGGAAAAGAAAACG-CATGTGTTC---CGATGAAAACGTA---AAACAACGCAT----TT-TA--------TTAATAGATA-C-CGTGTTC-TAAGCCGAGAC--TACACA---T--AGTCCAG------------T--T----G--------------T------------TT------------GAACATGCTC---------AAAACT--------------TT-CCGCGGGAT---AGAT-CGGACTTCGT-CG--------GACCAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AG----G----CG------AAC--------------GGATTGACA-A--T--------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|11 : AATGTAAGCAAAGTGGATATCTACTGCAAAAG-AAGTG-CATGCGTTA---CAAACAAAACGCATCCAATC------T----TTCTA--------A--GAGGACATC-TTTGTCCGTTGG-TGG--C------CG---T--CCTCAAG------------T----------------------T------------TT------------GAACATGCTC----------AAACT--------------TC-CCATTGGAT---AGA-----A-------CG--------GA-TGATGACTGTAATCATCAG-ATGATAA-TCGGACA--AAACGCGATCG-----AG----A----CG------AAC--------------AAATTGAAA-ATGT--------TTT----------TGTCCGTTGGCAATTTGCGGTGAGA
gi|13 : cAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAACCCTGTCTGGATATCTTGAGAGA-TTCCCGAAGAG-TCTAACAAGTCCAAGGCATTTGT-CGGCTTCGGCTA
gi|14 : AT---AGAT-TGGACTTTGCACGACAAGGAAGG-CAAGGAAGGCGCTGGCCA--AAGAGAA-ACGGTCAAGAAACGCCAAGGAACGGAG----A----CG------AAC--------------GGATTGACATATTT--------GTTATCCGTAGGACGTCCGTGGGCGTCATCCGGTGACGTGTAAtgtct
gi|17 : AACT--------------TT-CCGCCGGGT---AGAC-CGGACTTCGC-CG--------GA-CAACGAAGGTGTTGGCTGC-AAGAGAA-ACAAACAAGAAACGC----------AGAGAAA----CGGAGAGAGAC--------------GGATTGACA-TTTT--------GTT-------TGA
gi|18 : GTCCATTTGTGTTATCCGGTAAGATGTGACtag
gi|19 : aggaacagtacC-TAAA-CGG--------ACACTTT--AGTCCGA------------TGGT----G--------------T------------TCATTTAAAATTTGGAACTTGCTC---------AAAACT--------------TT-CCATCGactgtacggataaatataattgtgacataaatgctatccgctgatgaaagtcattcccgactctgttccg
gi|2 : ggaactatgcaaacgcccagctagcgtcga-ATCT--------GTG-------CGATGTCCCTTTATGCTATCCGGTAGGATGTGACttgga
gi|2 : AAGGCTACAAGACCCTTATCTC-CTTCCTCAGTCAGCAACAATGCTGGAGAAGACAAGACCACC----TAAGATTTACAGGTAacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaaaggctacaagacccttatctccttcctcagtcagcaacaatgctggagaagacaagaccacctaagatttacaggta
gi|3 : gtcacatcctaccggatagcataaagggacatcgcacagatacaaataattgtgacgtaatgctgtccgttgatgaaaggcgtccccgtctttgctctgggctcctacgagcggtgtatgaaggattaaaaaatattttttactgcacgagtactgaacatgtaccggtccgggtaattaggacggtcaggataaccgtgaaataccaggttaaacgaacgaggcacgcacgagaaactgattcaacgttagacgaacagacatgtatcgttacgtcgataactaaacatggtgaccttttagacttatcgccatttctgatatttccaaaaaggaagtactttacaaatggttagaatggtaagggcagggtacgtgaaCTATAAGACCCCCACCTC-CTTCTTCTGTCATAGACAATG-TCGGGAAGAGCAGAATGCCGCC-CAAGATTCACTGGTAGAA--------TG------TTGAGA-AATTTCCAAAG-GCTCTAATT-GACCAAGACATTCGTCTG-CTTGAGCGAACTGGTCAAATATACAAACATTT-GAAAGTTC---GG-------CGGATATTAACGGGT-----------------GTGAACTAGTTAAATACAGGAAAAG-AAAC--TATGCGTTC---CGAT-AAAACGCA---TAACTAC-------------------------CGAACA-T---------TAAG-CGG-AC--A--ACA---T--GGTCCGA------------TGGT----G--------------TCCGTTTCAAGATTT------------GAACATGCTA---------AGAACT--------------TTTCCGCCTGAT---AAAC-CGGACTTCGC-CG--------GA-CAAGGAGCTCGTTGGCTGC-AAGAGGA-ACAGACAAGAAACGC----------AG----AGGACCGGAGAGAAAC--------------GGACTGACA-CTTT----------------------GTCCGGTAGAGTTGTCCGGTGAGTTG
gi|4 : agAAGACTACAAGGCCTTCACCTTTCTTCCTCTGCCATTGACAAAGCTGGGGAAGAGCAGACCGCCG-CTCAAGATTTACTGGTAGAAA
gi|6 : ggctcctgcgatcagtgtatgaagcgtgtaccggacaataaacggtctattaacgggcattaccgtctgactaacggataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgtatacgaacggatttgcaccggttacaggactgacaaaacgggtattgatcattcgaaagtttagattttatatcatcctcgcagacaaattcccattatgcctttaaaatgatggtctacaaatgtttggaaggataaaggcaggacacgggaaAAGACTACAAGGCCTTCACCTTTCTTCCTCTG-CATTGACAAAGC-GGGGAAGAGCAGACCGCCGCCTCAAGATTTA
gi|7 : gtaccgacaataaacggtctattaacgggcattaccgtctgactaaccggcataagtaaccggttaaacaaacggggaacgcatgagaaaccgtctttcatgagaaacgttctttcaacgatacgaacggatttgcaccggttacaggactgaaaaacgggtattgatcattcgaaagttagattttatatcatcctcgcagacaattcccattatgcctttaaaatgatggtctacaaatgtttggaaaggaaaaggcaggacacgggaAAATACTGGGGGAA-ATACGGCATGAGTTTGCTCGAGCACAATGTA---AA---ACGCATATCATTATACGCTTATTC--ACAGAAA-CATGTATTC-TAAG-T-GGACTGT--ACA---TTAAGTCCGGCAGTGTCCCGTAT--TTCAAG--------------T------------TT------------AAACATGCTCGTATATACAGAAACTACCAAAACACTATATT-CCATCACGTAAAAGATCCGG--TTCCC-CA--------GA-CAACTAA--AGAAGGCTGTAAAGCGAACCCGCAGAAG-AACGG----------AG----A----CA------AAG--------------GGATTGACA-AT
gi|8 : caaaatcaagttccaaaaaaaagttcccgagaactctgggccaaataaccaagtaaatctctaagcaaACA-AAA-GTCA-GAAAGTCCAAAGGACACTTACGGATGTGAACTGGTCACATACACAAATATATACAAACTGGACAAATACAGGAAAAG-AAACG-CATGTGTTC---CGATGAAAACGTA---AAACAACGCAT----TTATA--------T--ATAGATA-C-CGTGTTC-TAAG-C-GGAC--TACACA---T--AGTCCAG------------T--G----T--------------T------------TT------------GAACATGCTC---------AAAACT--------------TT-CCGCGGGAT---AGAT-CGGACTTCGT-CG--------GA-CAAGGAATGCAGTGGCTAC-AAAAGAA-ACGGACAAGAAACGC----------AG----G----CG------AAC--------------GGATTGACA-A--T--------GTT-------GGATGTCTGTTAGCATTATCCGTTGGGGTGTGAC
gi|9 : ACACAAAAGTCG-GAGAGTCCAACGGACATT---------------------------AATGGATGCAAACTGGTTAAATACAGGAAAAG-AAGCG-CATGAGTTT---CGATTAACATGTA---TAATAACGCAG----TT--------------------A-C-CGTACAC-TAAG-C-GGAC--A--ACA---T--AGTCCGG------------T--G----GTCTCCGTTTCAAGTT------------TT------------GAACATGCTC---------AACACT--------------T------------------------TTCGC-CG--------GA-CAAGGAACGC-ATGGCCGC-AAGAGAA-ACGGACAAGACATGC----------AG----A----GG------AACGGACACGAATAAATGGACTGACA-ATTTTCTCATCCGTT-------GGACGTCCGTAAGTATTGTACGGTGAGATGTGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGTTCACACCTCACAGGATAGCTTAAATGGGCATAGCACAAATGAAAATAGTGGTGACATAATGTTGTTCATTGGATTCCGTTGATGAAGTTCGTTCCAGCTTCTGTTCAGAGCTTTGTGATCGATATATGAAGCGTATGAAGTTTCATCGGTGCATAAAACGCATAATAACCGCATAATTACTAACAATGTACCGGACAATTAATCTTAGCGCACAATACCGTTTTCAAAACGGACAAGTACTGAATGAAACAGACGTGGGACGCATCGAGAAACTGATACAAGGTTCTTTCAACGTTAGACGAACGGATTTGTACCAGCTTCGTGACTGACAAAGGGGGGATCATTCGAAAGT
Unaligned ( gi|10 ): GCAGTCCACACCTTCTGGATACGCATAACGGGACGTCGCAAACGAAATAAAAATATTGTCAGATATGCCGTCTGTTGATTCTGTAAATGAAAAGTCATTCCTGCTGCCGCTGGCTCGGTCCCCTGCATCGGTGATGAAGCGTATATTGCACAATACCGCACGATTACTAGCCATGTACCGGGCACTTAAGGGTCTGTAGCGACATACCGTCGAATATAATTCAATACCGGAGGAACGAACTTGGTGCGCACAGAAACGGTA
Unaligned ( gi|12 ): AGTTGCCATATCTCAGCAGATAGCAAAAGCGGACGTTCCACGGATAATAGCGATTGTGACGTGATGCCGTTCGTTGATGAATATCATTCCCGCAATTGTTTGTGACTCCTGCGATCGGTGAATGAAGCGCGAAGAACGCTTATTAACCGCACGATTAAAAGACATGTACCAGGCAATTA
Unaligned ( gi|15 ): AATTAGTCAACACCTTCCTGAATAAACATAAATGGATATTGCATGAAATACAATAATTGCGACATAATGGGTCCGTTGATGAATAGTCGTTCTGCCGCTGCTTCCGGCTAGGCTCCTG
Unaligned ( gi|16 ): ATTAGTCACACCTTCCTGAATAACATAAATGGATATTGCATGAAATAAAAATAATTGCGACATAATGGTGTCCGTTGATGAAAGTCGTTCCTGCCGCTGCTCCGGCTAGGCTCCTG
Unaligned ( gi|20 ): AGCAATGGTAAAATTAGGTGCCTAGGAACAGTA