lowQualScore : 1 111111 11111 111111111 1111 888888888888888888 111 111 11 1 2
lowQualScore : 8888 55 55 8888 4 2 999999 7 8 4 0 00000 1 111111111 4 0000 999999999999999999 44 2 1 8 8 0 444 111 00 5 0
lowQualScore : .... .. .. .... . . ...... . . . . ..... . ......... . .... .................. .. . . . . . ... ... .. . .
lowQualScore : 2222 55 55 5555 0 0 111111 3 0 0 7 00000 3 999999999 0 1111 999999999999999999 22 2 0 0 0 8 000 888 22 3 0
consensus : AAAT-A--TTT--TCGG--AGGAGCAA----A-TA-TCAACTAT--NCTG-A-G-TGTT-----TTCTC---T-----A-TA--T-AGAGA--G-A--AA-TATA--G-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA---TTTTNTATTGAG-TCG-TTTTGTTTTTCATGATAAC
Reference ( gi|2 ) : AAAT-A--TTT--TCGG--AGGAGCAA----A-TA-TCAACTAT--TCTG-A-G-TGTT-----TTCTC---T-----A-TA--T-AGAGA--ATATTAATTATA--G-AGACTATTGTTCACTGCATGAA-TAT-AACAAACTA---TTATATATTGAG-TCGTTTTTGTTTTTCAT-ATAAC
gi|17 : AAATTA--TTT--TCGG--AGGAGCAA----A-TA-TCAACTA-----TG-A--------------------------A-TA--C-AGA---------------------GACTATTTTTTACTGCATGAA-TAT-AACAAACTA---TTTTATATTG
gi|3 : AAAT-AAATTT--TCGG--ACGAGCAA----AATA-TAAA--AT--TATG-A-G-CGTT-----TT-TCGCTT-----A-TA--C-ACGGA--A-----AC-ACA--G-A-ATTATTG----CTTTATGAC-TATGAACAAA-TA---TTTT---TTGAT-TCGGTTTTGTTTTTCATGATAA
gi|16 : taaAAT----TTT--TTGG--AGGAGCAACAAAA-TAGTTAACTGG---CTG-A-G-TTTT-----TTCTC---T-----A-TA--TAAGAGA----------TATA--A-AGACAAT
gi|25 : gtt-A--TTC--TCGG--AGGAGCAA----A-TA-TCAACTGT--GCTG-cccaactatttca
gi|14 : tta-A--TTT--TCGGCAAGTAGCAG----A-TACTCAACTAT--GCTGCACG-TGTT-----TCCTC---TCTCACA-TA--T-AGAGAGGATATAAA
gi|20 : tta-A--TTT--TCGG--AGGAGCAA----A-TA-T----TAT--GCT--A-G----T-----TTCCT---T-----A-T---T-AGAGA--GGA-----TATA--A-AGACggaccaaactttccaa
gi|9 : agtta-A--TTTCGTCGG--AGGAGCAG----A-TA-TCAACTATGGCTTG-A-GATGTTCTTCCTCCTT---T-----AGTA--T--GAGA--AGAATGGATATA--A-AGatcaacttttcac
gi|19 : ttgtagaagtta-A--TTT--TTG---AGGAGCAT----A--A-TCAATT----TGCG-ATG-TGTT-----T-CTC---T-----A-TAAGA-AGAGA--A-A--AATTACATCC-AAATTAT--TTCACTGgatcaatcccca
gi|1 : tta--TTT--TGAG--AGATGCAA----A-TA-TCA-CTAT--GCTG-A-G-TGTT-----TTTTT---C-----A-TA--T-A--------------TATA--GGACACTATTGTTTACTGCATGAATTAT-AACAAACTATTTTTATTTGTTGAGATCGTTTat
gi|8 : aatagcatagagcaagtgaacccattggtatctcgatgttgtaacttgtaaaaaatatttgttttttttT--TTGG--AGGAGCAA----A-TATTCAACTGC--TGTGAA-G-TG-T-----TTCTC---T-----A-TAG-T-AGAGA--GGATTAAC--------AGACTATT
gi|13 : ggtgttaatagtcttcgttatgagttaagG-A-G-TGTT-----TTCTC---T-----A-TA--T-ATAGA--G----AATT-TA--A-AGACGATTCCTCTC----TGAA-TTT-TGCAAAC-----TTGTTTATTGAA-TCG-TTTTGTTTTTCAT-ATAACtaccaacttct
gi|21 : ATT--G-AGACTATTGTTTACTACATGAA-TAT-AACAAACTA---TTTTATATTGAG-TCGa
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): AAAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTGTATATTGAGT
Unaligned ( gi|5 ): ATTGTAAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAATTATTTTTATTGACTTCGTT
Unaligned ( gi|6 ): TGGTAAAAGTTTAATTTTTTCGGAGGAGCAACATTGTATACAACCATGGTAGCGTGAGATGTTTCTCATAATAGAGGAAGATTTATATTAGGGGAAATTCCAGGAGAGGC
Unaligned ( gi|7 ): AAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTGTATATTGA
Unaligned ( gi|10 ): AAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTATTTTATTGATTCGTTT
Unaligned ( gi|11 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAATCTATTTTATTGATTCGTT
Unaligned ( gi|12 ): GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTAAGAACAATTCCAAACTATTTTCATGAT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGACATTCCAAATCTTTTCACTGA
Unaligned ( gi|18 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAACTATTTCAC
Unaligned ( gi|22 ): TCACTCGTGATGTCATTCGTTTTGTCTTGTTTCATTTATAAAG
Unaligned ( gi|23 ): ATAGCAAGAGCATGACCCATGCTATTTCGATGTTAACTTGT
Unaligned ( gi|24 ): AATAGCAAGAGCATGAACCATGTTATCTCGATGTTACT
Alignments
lowQualScore : 1111 1 1111111 222222222222222 111 1 2
lowQualScore : 7777 44 44 4444 3 0 3 0 4444444 6 6 6 3 88888 3 8888888 3 3 000000000000000 3 44 5 6 6 111 7 8 6 3
lowQualScore : .... .. .. .... . . . . ....... . . . . ..... . ....... . . ............... . .. . . . ... . . . .
lowQualScore : 5555 66 66 2222 3 0 3 8 8888888 2 7 7 2 33333 3 8888888 3 3 444444444444444 6 88 2 7 7 777 5 0 0 3
consensus : AAAT-A--TTT--TCGG--AGGAGCAA----A-TA-T-CAACTAT----GC-TG-A-G-TGTT-----TT-CTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTATTT---TATATTGAG-TCG-TTTTGTTTTTCAT-ATAAC
Reference ( family-3289 ) : AAAT-A--TTT--TCGG--AGGAGCAA----A-TA-T-CAACTAT----NC-TG-A-G-TGTT-----TT-CTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTATTT---TNTATTGAG-TCG-TTTTGTTTTTCATGATAAC
gi|1 : --TTT--TGAG--AGATGCAA----A-TA-T-CA-CTAT----GC-TG-A-G-TGTT-----TT-TTTC-----A-T-A-TA----------------TATAGGACACTATTGTTTACTGCATGAATTAT-AACAAACTATTTTTATTTGTTGAGATCG-TTT
gi|13 : aatagcatagagcaagtgaacccattggtatctcgatgttgtaacttgtaaaaaatatttgttttttttG-A-G-TGTT-----TT-CTCT-----A-T-A-TATAG-AG-----A---ATTTAA-AGACGATTCCT--CT-C-TGAA-TTT-TGCAAAC--TTG---TTTATTGAA-TCG-TTTTGTTTTTCAT-ATAAC
gi|14 : -A--TTT--TCGGCAAGTAGCAG----A-TACT-CAACTAT----GC-TGCACG-TGTT-----TC-CTCTCTCACA-T-A-TAGAG-AG-----G---ATATAA-AGa
gi|16 : ttaAAT----TTT--TTGG--AGGAGCAACAAAA-TAGT-TAACTG-----GC-TG-A-G-TTTT-----TT-CTCT-----A-T-A-TA----AG----AG---ATATAA-AGACAATgaccaaactttccaa
gi|17 : gttAAATTA--TTT--TCGG--AGGAGCAA----A-TA-T-CAAC----------------------------------------T-A-TG-----------A---ATACAG-AGACTATTTTTTACTGCATGAA-TAT-AACAAACTATTT---TATATTGcccaactatttca
gi|19 : -A--TTT--TTG---AGGAGCAT----A--A-T-CAATT-T----GC--G-ATG-TGTT-----T--CTCT-----A-T-A-AGAAG-AG----AA---AAAT
gi|2 : ttaAAAT-A--TTT--TCGG--AGGAGCAA----A-TA-T-CAACTAT----TC-TG-A-G-TGTT-----TT-CTCT-----A-T-A-TAGAG-AATATTAA---TTATAG-AGACTATTGTTCACTGCATGAA-TAT-AACAAACTATTA---TATATTGAG-TCGTTTTTGTTTTTCAT-ATAACtacatccaaattatttcactgat
gi|20 : -A--TTT--TCGG--AGGAGCAA----A-TA-T-----TAT----GC-T--A-G----T-----TT-CCTT-----A-T---TAGAG-AG-----G---ATATAA-AGAC
gi|21 : agttaATTG-AGACTATTGTTTACTACATGAA-TAT-AACAAACTATTT---TATATTGAG-TCG-atcaacttttcac
gi|25 : -A--TTC--TCGG--AGGAGCAA----A-TA-T-CAACTGT----GC-TG-
gi|3 : ttaAAAT-AAATTT--TCGG--ACGAGCAA----AATA-T-AAA--AT----TA-TG-A-G-CGTT-----TTTCGCT-------T-A-TACAC-GG----AA---ACACAG-A-ATTATTGCTT----TATGAC-TATGAACAAA-TATTT---T---TTGAT-TCGGTTTTGTTTTTCATGATAA
gi|6 : taaAAT-T--TTT--TCGG--AGGAGCAACATTG-TA-TACAACCATGGTAGCGTG-A-GATG-T-----TT-CTC------A-TAA-TAGAG-GA----AG---ATTTA
gi|8 : tggtaaaagtttT--TTGG--AGGAGCAA----A-TATT-CAACTGC----TG-TGAA-G-TG-T-----TT-CTCT-----A-T-AGTAGAG-AG----GA---TTA-AC-AGACTATTtattaggggaaattccaggagaggc
gi|9 : ggtgttaatagtcttcgttatgagttaag-A--TTTCGTCGG--AGGAGCAG----A-TA-T-CAACTATGG--CT-TG-A-GATGTTCTTCCTC-CTTT-----AGT-A-T-GAGAAG----AATGGATATAA-AGtaccaacttct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTGTATATTGAGT
Unaligned ( gi|5 ): ATTGTAAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAATTATTTTTATTGACTTCGTT
Unaligned ( gi|7 ): AAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTGTATATTGA
Unaligned ( gi|10 ): AAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTATTTTATTGATTCGTTT
Unaligned ( gi|11 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAATCTATTTTATTGATTCGTT
Unaligned ( gi|12 ): GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTAAGAACAATTCCAAACTATTTTCATGAT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGACATTCCAAATCTTTTCACTGA
Unaligned ( gi|18 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAACTATTTCAC
Unaligned ( gi|22 ): TCACTCGTGATGTCATTCGTTTTGTCTTGTTTCATTTATAAAG
Unaligned ( gi|23 ): ATAGCAAGAGCATGACCCATGCTATTTCGATGTTAACTTGT
Unaligned ( gi|24 ): AATAGCAAGAGCATGAACCATGTTATCTCGATGTTACT
Alignments
lowQualScore : 1111 1 111111111 111 1
lowQualScore : 7777 44 44 3 4444 0 3 7777 5555 99999999999999999 8888888 333 5 3 555555555 3 44 5 6 6 6 666 8 8 8 3
lowQualScore : .... .. .. . .... . . .... .... ................. ....... ... . . ......... . .. . . . . ... . . . .
lowQualScore : 5555 66 66 3 2222 0 3 1111 5555 33333333333333333 8888888 888 9 3 333333333 6 88 2 7 7 7 555 0 0 0 3
consensus : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
Reference ( family-3289 ) : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
gi|1 : --TTT--TGAG--AGATGC-AA----ATA-T-CA-CTAT----G--C-TG---A-G-TG-TT-----TTTTTC-----A-T-A-TA----------------TATAGGACACTATTGTTTACTGCATGAATTAT-AACAAACTATTTTTATTTGTTGAGATC-G-TTT
gi|13 : aatagcatagagcaagtgaacccattggtatctcgatgttgtaacttgtaaaaaatatttgttttttttG---A-G-TG-TT-----TTCTCT-----A-T-A-TATAG-AG----AA---TT-TAA-AGACGATTCCT--CT-C-TGAA-TTT-TGCAAACT--TGTT---TATTGAA-TC-G-TTTTGTTTTTCAT-ATAAC
gi|14 : -A--TTT--TCGGCAAGTAGC-AG----ATACT-CAACTAT----G--C-TGC--ACG-TG-TT-----TCCTCTCTCACA-T-A-TAGAG-AG-----G---ATATAA-AGa
gi|16 : ttaAAT----TTT--TTGG--AGGAGC-AACAAAATAGT-TAACTG-----G--C-TG---A-G-TT-TT-----TTCTCT-----A-T-A-TA----AG----AG---ATATAA-AGACAATgaccaaactttccaa
gi|17 : gttAAATTA--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G-----------------------------------------------------A---ATACAG-AGACTATTTTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGcccaactatttca
gi|19 : -A--TTT--TTG---AGGAGC-AT----A-A-T-CAATT-T----G--C--G---ATG-TG-TT-----T-CTCT-----A-T-A-AGAAG-AG----AA---AAAT
gi|2 : ttaAAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----T--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AATATTAA---TTATAG-AGACTATTGTTCACTGCATGAA-TAT-AACAAACTA-TTATA--TATTGAG-TC-GTTTTTGTTTTTCAT-ATAACtacatccaaattatttcactgat
gi|20 : -A--TTT--TCGG--AGGAGC-AA----ATA-T-----TAT----G--C-T----A-G-----T-----TTCCTT-----A-T---TAGAG-AG-----G---ATATAA-AGAC
gi|21 : agttaATTG-AGACTATTGTTTACTACATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-atcaacttttcac
gi|25 : -A--TTC--TCGG--AGGAGC-AA----ATA-T-CAACTGT----G--C-TG---
gi|3 : ttaAAAT-AAATTT--TCGG--ACGAGCAAA----ATA-T-AAA--AT----T--A-TG---A-G-CGTTT-----TTCGCT-------T-A-TACAC-GG----AA---ACACAG-A-ATTATTGCTT----TATGAC-TATGAACAAA-TA-TTTT-----TTGAT-TCGG-TTTTGTTTTTCATGATAA
gi|6 : taaAAT-T--TTT--TCGG--AGGAGC-AACATTGTA-TACAACCATGGTAG--CGTG---A-GATG--T-----TTCTC------A-TAA-TAGAG-GA----AG---ATTTA
gi|8 : tggtaaaagtttT--TTGG--AGGAGC-AA----ATATT-CAAC--T----G--C-TGTGAA-G-TG--T-----TTCTCT-----A-T-AGTAGAG-AG----GA---TTA-AC-AGACTATTtattaggggaaattccaggagaggc
gi|9 : ggtgttaatagtcttcgttatgagttaag-A--TTTCGTCGG--AGGAGC-AG----ATA-T-CAACTAT----GGCT-TG---A-GATG-TTCTTCCTCCTTT-----AGT-A-T-GAGAAG----AATGGATATAA-AGtaccaacttct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTGTATATTGAGT
Unaligned ( gi|5 ): ATTGTAAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAATTATTTTTATTGACTTCGTT
Unaligned ( gi|7 ): AAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTGTATATTGA
Unaligned ( gi|10 ): AAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTATTTTATTGATTCGTTT
Unaligned ( gi|11 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAATCTATTTTATTGATTCGTT
Unaligned ( gi|12 ): GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTAAGAACAATTCCAAACTATTTTCATGAT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGACATTCCAAATCTTTTCACTGA
Unaligned ( gi|18 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAACTATTTCAC
Unaligned ( gi|22 ): TCACTCGTGATGTCATTCGTTTTGTCTTGTTTCATTTATAAAG
Unaligned ( gi|23 ): ATAGCAAGAGCATGACCCATGCTATTTCGATGTTAACTTGT
Unaligned ( gi|24 ): AATAGCAAGAGCATGAACCATGTTATCTCGATGTTACT
Alignments
lowQualScore : 1111 1 111111111 111 1
lowQualScore : 7777 44 44 3 4444 0 3 7777 5555 99999999999999999 8888888 333 5 3 555555555 3 44 5 6 6 6 666 8 8 8 3
lowQualScore : .... .. .. . .... . . .... .... ................. ....... ... . . ......... . .. . . . . ... . . . .
lowQualScore : 5555 66 66 3 2222 0 3 1111 5555 33333333333333333 8888888 888 9 3 333333333 6 88 2 7 7 7 555 0 0 0 3
consensus : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
Reference ( family-3289 ) : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
gi|1 : --TTT--TGAG--AGATGC-AA----ATA-T-CA-CTAT----G--C-TG---A-G-TG-TT-----TTTTTC-----A-T-A-TA----------------TATAGGACACTATTGTTTACTGCATGAATTAT-AACAAACTATTTTTATTTGTTGAGATC-G-TTT
gi|13 : aatagcatagagcaagtgaacccattggtatctcgatgttgtaacttgtaaaaaatatttgttttttttG---A-G-TG-TT-----TTCTCT-----A-T-A-TATAG-AG----AA---TT-TAA-AGACGATTCCT--CT-C-TGAA-TTT-TGCAAACT--TGTT---TATTGAA-TC-G-TTTTGTTTTTCAT-ATAAC
gi|14 : -A--TTT--TCGGCAAGTAGC-AG----ATACT-CAACTAT----G--C-TGC--ACG-TG-TT-----TCCTCTCTCACA-T-A-TAGAG-AG-----G---ATATAA-AGa
gi|16 : ttaAAT----TTT--TTGG--AGGAGC-AACAAAATAGT-TAACTG-----G--C-TG---A-G-TT-TT-----TTCTCT-----A-T-A-TA----AG----AG---ATATAA-AGACAATgaccaaactttccaa
gi|17 : gttAAATTA--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G-----------------------------------------------------A---ATACAG-AGACTATTTTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGcccaactatttca
gi|19 : -A--TTT--TTG---AGGAGC-AT----A-A-T-CAATT-T----G--C--G---ATG-TG-TT-----T-CTCT-----A-T-A-AGAAG-AG----AA---AAAT
gi|2 : ttaAAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----T--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AATATTAA---TTATAG-AGACTATTGTTCACTGCATGAA-TAT-AACAAACTA-TTATA--TATTGAG-TC-GTTTTTGTTTTTCAT-ATAACtacatccaaattatttcactgat
gi|20 : -A--TTT--TCGG--AGGAGC-AA----ATA-T-----TAT----G--C-T----A-G-----T-----TTCCTT-----A-T---TAGAG-AG-----G---ATATAA-AGAC
gi|21 : agttaATTG-AGACTATTGTTTACTACATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-atcaacttttcac
gi|25 : -A--TTC--TCGG--AGGAGC-AA----ATA-T-CAACTGT----G--C-TG---
gi|3 : ttaAAAT-AAATTT--TCGG--ACGAGCAAA----ATA-T-AAA--AT----T--A-TG---A-G-CGTTT-----TTCGCT-------T-A-TACAC-GG----AA---ACACAG-A-ATTATTGCTT----TATGAC-TATGAACAAA-TA-TTTT-----TTGAT-TCGG-TTTTGTTTTTCATGATAA
gi|6 : taaAAT-T--TTT--TCGG--AGGAGC-AACATTGTA-TACAACCATGGTAG--CGTG---A-GATG--T-----TTCTC------A-TAA-TAGAG-GA----AG---ATTTA
gi|8 : tggtaaaagtttT--TTGG--AGGAGC-AA----ATATT-CAAC--T----G--C-TGTGAA-G-TG--T-----TTCTCT-----A-T-AGTAGAG-AG----GA---TTA-AC-AGACTATTtattaggggaaattccaggagaggc
gi|9 : ggtgttaatagtcttcgttatgagttaag-A--TTTCGTCGG--AGGAGC-AG----ATA-T-CAACTAT----GGCT-TG---A-GATG-TTCTTCCTCCTTT-----AGT-A-T-GAGAAG----AATGGATATAA-AGtaccaacttct
blockSeqs : AAA CG CA A CAAA C A GGTA GCT AGATGTTCTTCC CTCACA AA T A TATTAA . TA G . G . A . G T G
blockSeqs : TA . . . CATT G . . CG CACGTGTT AG AG G . AATGG . CA G . . . A . . . .
blockSeqs : A . . . . T . . C TGAAGTGT A A A . AA . TA A . . . A . . .
blockSeqs : A . . . . . . . C ATGTGTT A A G . AG . T . . . . . . . .
blockSeqs : A . . . . . . . C AGCGTTT A A G . AA . . . . . . .
blockSeqs : A . . . . . . . C AGTGTT A A C . AA .
blockSeqs : T . . . . . . . C AGTTTT A A G . AG .
blockSeqs : A . . . . . . . C AGTGTT A A G . GA .
blockSeqs : . . . . . . . . A AGATGT A A G . G .
blockSeqs : . . . . . . . C AGT . . . . A .
blockSeqs : . . . . . . . . . . . . . G
blockSeqCons : AA******* A**
originalCons : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
finalCons : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AGAA-------ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTGTATATTGAGT
Unaligned ( gi|5 ): ATTGTAAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAATTATTTTTATTGACTTCGTT
Unaligned ( gi|7 ): AAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTGTATATTGA
Unaligned ( gi|10 ): AAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTATTTTATTGATTCGTTT
Unaligned ( gi|11 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAATCTATTTTATTGATTCGTT
Unaligned ( gi|12 ): GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTAAGAACAATTCCAAACTATTTTCATGAT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGACATTCCAAATCTTTTCACTGA
Unaligned ( gi|18 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAACTATTTCAC
Unaligned ( gi|22 ): TCACTCGTGATGTCATTCGTTTTGTCTTGTTTCATTTATAAAG
Unaligned ( gi|23 ): ATAGCAAGAGCATGACCCATGCTATTTCGATGTTAACTTGT
Unaligned ( gi|24 ): AATAGCAAGAGCATGAACCATGTTATCTCGATGTTACT
Alignments
lowQualScore : 1111 1 111111111 111 1
lowQualScore : 7777 44 44 3 4444 0 3 7777 5555 99999999999999999 8888888 333 5 3 555555555 3 44 5 6 6 6 666 8 8 8 3
lowQualScore : .... .. .. . .... . . .... .... ................. ....... ... . . ......... . .. . . . . ... . . . .
lowQualScore : 5555 66 66 3 2222 0 3 1111 5555 33333333333333333 8888888 888 9 3 333333333 6 88 2 7 7 7 555 0 0 0 3
consensus : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
Reference ( family-3289 ) : AAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AG----AA---ATATAG-AGACTATTGTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-TTTTGTTTTTCAT-ATAAC
gi|1 : --TTT--TGAG--AGATGC-AA----ATA-T-CA-CTAT----G--C-TG---A-G-TG-TT-----TTTTTC-----A-T-A-TA----------------TATAGGACACTATTGTTTACTGCATGAATTAT-AACAAACTATTTTTATTTGTTGAGATC-G-TTT
gi|13 : aatagcatagagcaagtgaacccattggtatctcgatgttgtaacttgtaaaaaatatttgttttttttG---A-G-TG-TT-----TTCTCT-----A-T-A-TATAG-AG----AA---TT-TAA-AGACGATTCCT--CT-C-TGAA-TTT-TGCAAACT--TGTT---TATTGAA-TC-G-TTTTGTTTTTCAT-ATAAC
gi|14 : -A--TTT--TCGGCAAGTAGC-AG----ATACT-CAACTAT----G--C-TGC--ACG-TG-TT-----TCCTCTCTCACA-T-A-TAGAG-AG-----G---ATATAA-AGa
gi|16 : ttaAAT----TTT--TTGG--AGGAGC-AACAAAATAGT-TAACTG-----G--C-TG---A-G-TT-TT-----TTCTCT-----A-T-A-TA----AG----AG---ATATAA-AGACAATgaccaaactttccaa
gi|17 : gttAAATTA--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----G-----------------------------------------------------A---ATACAG-AGACTATTTTTTACTGCATGAA-TAT-AACAAACTA-TTTTA--TATTGcccaactatttca
gi|19 : -A--TTT--TTG---AGGAGC-AT----A-A-T-CAATT-T----G--C--G---ATG-TG-TT-----T-CTCT-----A-T-A-AGAAG-AG----AA---AAAT
gi|2 : ttaAAAT-A--TTT--TCGG--AGGAGC-AA----ATA-T-CAACTAT----T--C-TG---A-G-TG-TT-----TTCTCT-----A-T-A-TAGAG-AATATTAA---TTATAG-AGACTATTGTTCACTGCATGAA-TAT-AACAAACTA-TTATA--TATTGAG-TC-GTTTTTGTTTTTCAT-ATAACtacatccaaattatttcactgat
gi|20 : -A--TTT--TCGG--AGGAGC-AA----ATA-T-----TAT----G--C-T----A-G-----T-----TTCCTT-----A-T---TAGAG-AG-----G---ATATAA-AGAC
gi|21 : agttaATTG-AGACTATTGTTTACTACATGAA-TAT-AACAAACTA-TTTTA--TATTGAG-TC-G-atcaacttttcac
gi|25 : -A--TTC--TCGG--AGGAGC-AA----ATA-T-CAACTGT----G--C-TG---
gi|3 : ttaAAAT-AAATTT--TCGG--ACGAGCAAA----ATA-T-AAA--AT----T--A-TG---A-G-CGTTT-----TTCGCT-------T-A-TACAC-GG----AA---ACACAG-A-ATTATTGCTT----TATGAC-TATGAACAAA-TA-TTTT-----TTGAT-TCGG-TTTTGTTTTTCATGATAA
gi|6 : taaAAT-T--TTT--TCGG--AGGAGC-AACATTGTA-TACAACCATGGTAG--CGTG---A-GATG--T-----TTCTC------A-TAA-TAGAG-GA----AG---ATTTA
gi|8 : tggtaaaagtttT--TTGG--AGGAGC-AA----ATATT-CAAC--T----G--C-TGTGAA-G-TG--T-----TTCTCT-----A-T-AGTAGAG-AG----GA---TTA-AC-AGACTATTtattaggggaaattccaggagaggc
gi|9 : ggtgttaatagtcttcgttatgagttaag-A--TTTCGTCGG--AGGAGC-AG----ATA-T-CAACTAT----GGCT-TG---A-GATG-TTCTTCCTCCTTT-----AGT-A-T-GAGAAG----AATGGATATAA-AGtaccaacttct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTGTATATTGAGT
Unaligned ( gi|5 ): ATTGTAAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAATTATTTTTATTGACTTCGTT
Unaligned ( gi|7 ): AAAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTGTATATTGA
Unaligned ( gi|10 ): AAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTATTTTATTGATTCGTTT
Unaligned ( gi|11 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAATCTATTTTATTGATTCGTT
Unaligned ( gi|12 ): GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTAAGAACAATTCCAAACTATTTTCATGAT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGACATTCCAAATCTTTTCACTGA
Unaligned ( gi|18 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAACTATTTCAC
Unaligned ( gi|22 ): TCACTCGTGATGTCATTCGTTTTGTCTTGTTTCATTTATAAAG
Unaligned ( gi|23 ): ATAGCAAGAGCATGACCCATGCTATTTCGATGTTAACTTGT
Unaligned ( gi|24 ): AATAGCAAGAGCATGAACCATGTTATCTCGATGTTACT