lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 4 333333 111 111 111 11 11 11 1 666666666666666666666 1111 11111 1 66666666666666666 2222 111 3333333 11 1 1 111 11 6666666666666666 1 22 222 777777777 1 11111 3333333 1 222222222 111 444444444444 7777777777777777777777777 1 1 11 1111 5555555555555555 1111111 555555555 22 2222 111111 000000000000000000000000000000000000000000000000000000000000000000 2222 111 1 2 1 222 444 111 55 1 1111 1 222222222 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222 77777777777777777777777777777 1 11 1
lowQualScore : 0 6 99 2 888888 6 0 0 999 444 000 22 99 11 11 5 4 1 1 0 6 333333333333333333333 2 4444 0 9999 2 33333 2 2 0 33333333333333333 1111 00 777 77 4 7777777 33 0 0 0 2 222 4 2 33 4444444444444444 4 1 2 6 00 2 444 6 1 777777777 6 99999 7777777 3 0 0 222222222 555 6 3 555555555555 4444444444444444444444444 6 6 0 0 1 99 9999 1111111111111111 1 3 7777777 1 6 99 111111111 2 0 6 666 1 99 7 7 99 3 1 33 6 2 2 5555 2 2 777 111111 3 222222222222222222222222222222222222222222222222222222222222222222 1 6 9 6666 999 2 2 0 5 888 111 888 2 00 5 9999 4 5 6 2 666666666 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 8888888 77 11111111111111111111111111111 6 0 4 6 4 3 44 0 6 4 6 3
lowQualScore : . . .. . ...... . . . ... ... ... .. .. .. .. . . . . . . ..................... . .... . .... . ..... . . . ................. .... .. ... .. . ....... .. . . . . ... . . .. ................ . . . . .. . ... . . ......... . ..... ....... . . . ......... ... . . ............ ......................... . . . . . .. .... ................ . . ....... . . .. ......... . . . ... . .. . . .. . . .. . . . .... . . ... ...... . .................................................................. . . . .... ... . . . . ... ... ... . .. . .... . . . . ......... ................................................................................................................... . . ....... .. ............................. . . . . . . .. . . . . .
lowQualScore : 0 0 00 2 888888 6 6 8 000 000 888 00 44 00 44 8 6 4 4 5 5 222222222222222222222 0 0000 2 2222 2 22222 0 5 0 88888888888888888 2222 55 555 88 2 0000000 88 8 0 0 5 222 2 5 88 3333333333333333 7 0 0 7 00 5 888 0 0 111111111 6 88888 4444444 2 6 8 444444444 222 0 0 333333333333 0000000000000000000000000 0 0 5 0 0 00 5555 0000000000000000 8 3 2222222 0 0 22 000000000 0 2 5 444 0 22 8 8 22 3 0 88 7 2 5 2222 2 2 999 444444 2 888888888888888888888888888888888888888888888888888888888888888888 0 7 0 0000 000 0 5 0 5 000 555 000 5 55 0 5555 0 5 0 5 555555555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0000000 00 55555555555555555555555555555 0 5 0 0 0 0 00 5 0 0 0 0
consensus : ATCCAGCCTGGCATGAATCTTGTTCATNGCCCTGACATT-TNTGGAAAAGCNCCAGGAGAACCTAGGCA-GGAGGAA---GACCATACTATNGAGG-AGGCGG--GGAACATAGNACGAATTTCTAACAATGTAGNAATNAGAATCTGCGN----CA---AGCGCTCTGTNGTCGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATT----ATNTAGT-GAG--GGGA----TCCTC---ATACCGTAATAANGT-CGAAGT--TTCG-GGA-CAAGGTCCTGCAGCTTCATGCCGCTATATCCCTGC--CACCATATCGA-GCG-T--T-TANGCTGAGGTCGAG-CCCCCAAGTCTGGTANCCGCACAAGCAG---CTCT-TCGACGACGGAGGAT----CCAAC--G---ATCCANACTCGTGATACNACCTA-AAAANTCTTGGCTTGTATTAACT--CGGTAGCANTGANATGCGCACACAAATAATGACAACAAAGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACAATTGGTG-CTGTCAA-GCCCAAGACNN-TCAAA----------G-A-CCGANTTAAT-GTT-GCAACGAATTGATAG--CGAATTA-GGGC--TGTCCCCCAAAATGAATAAACAA--GGGGCCCNT--TTTTGACGGGT-GGATTTGTANGAAANCNTACATNGC-CGCAA-ANG--GGCA----TGCTGTTG-CA-ATGGGATGCCGGGATAG---CAGANAG---------TTGTTNCGACG-CNAACTCGTCAGTCTT-GAACGTT-TGATCGTNAGTTGGAATTTTGGCCTGAAGCAATCAAATGNCATNGAACTNCGATGTGCTTCGAGCAGNGTTGCNCTTGNNCAGNGCGAATTCGCGTACCTGCANNNAAGAATGCNTGGAACGCCAGCGTATTTNNGGNAGCTNNGAATAGCCTGGTTTCATGTANTTTG----GA-TA-----GTTCGTAATGTN-GAAT--T-CCGTTGGAGGAGGTGTAAAGTAGTAG-ANANTCGCGAGTCCTTACGACT-GTGTGTCCTTNGCNCACCNCGTAGGAGCTTTNTNATGANAGAGNGGCCNNTAGGGTCNACGTTGTGAANTGTTNTAG
Reference ( gi|1 ) : ATCCAGCCTG-CACGAATTTTGTTCATGGCTCTAACATT-TGTGGAAAAGCTCCAGGAGAACCTGGGCAGGGAGGAA---GACCAAAATATGGAGG-AGGCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATCTGTAT----CA---ATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATT----AGGTAGC-GAG--GGGA----TCCTC---ATATCGCAATAATATGCGAAGT--TTTG-GGA-CAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAGATGCATTAGT-TAAGTTCAGGTCCAATCCCCCAAGTCTGGTAAAAGCGCAAGTAGACGCTCTTTTGACAATGGAGGAC----CCAAA--A---ATCCAGACTCGTGAT-CGACCTA-AAAAGTCTTAGTTTGTGTTAGCC--AAGTAGCATTGAGATATA---ACAATTAAT---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-CTGTCAATGCCCAAGACTT-TCAAA----------G-A-GCGATTTAGT-GTT-GCAACAAACTGATAG--CGAGTTATAGGC--TGCCCCCCAAAATGAATAAACAA--GGGGTCTGT--TCTTAATTGGT-GGATTTGCAGGAAGTGATGCATTGC-CACAA-AGG--GGCA----TGTTG--GACA-ATTGGATGCTGGAATA----CAGAGAG---------TTGTTCCGACCCCCAATTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAACGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC----ACCT----------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAACAAGTA-----GCTTCTAATGTACGAATAAT-CCTTTGAAGGAGGTGTAAAGTAATAG-GCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|9 : ATCCAGCCTGGCATGAATTTTGTTCATTGCTCTATCATT-TCTGGAAAAGCCCCAGGATAACCTGGGCATGGAGGAA---GACCAAACTATGGAGG-AGGCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
gi|5 : tcaataacagatcatccccaatttgggacaaatgaactccatctcgaaggaatagatgtgacggttttatgctaaatggggggtgtttgatgtaatgaccacctctagctgtcaggaatttaattgcttccctTCTTATTCATAGCCCTAACGTT----------GCT---AGAGA-TCTAGAC-----GGAA----ATCAAACTACTGAGA-TGGCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATGCAGCA---AACATTTTGTACCTGTATGGTCAGCATTGTTTG---CTCAAT--A-TAGTA----A--TGAT-GAG--AAAA----TGATT---AT-----AACAATTT--AGAGT--TTTT-GAA-CGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCA-ATAGA
gi|4 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttTGTTCATTGCCCTGATATTATCTG-AAAATCGCCACGAGAACCTAGGCAATGACGAG---GACCATACGATAGAGG-TGGTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATTTGCAG----CA---GGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATT----AAGAAGTTGGG--AGGA----TTTTC---GTACCGTAATAAGGT---AATTAGTTTG-GGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCGA-GAAGTTGTCCAGGTTGATGTTGAAACCACCAAGTCTGGTTGCCGCATAGGTTGCTGCTCTCTTGACAATGGAGGAT----CCAAC--A---ATCCAAACTCTTG---CTACCTCTACAAATCTTGGTTTGAATTAGTTTGGGGTAGCAaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|2 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctatccattctacccctgacccTTCATG-CCCTGACATTCTGAAAAAAAGCCCCCGAAGAACTTAGGCA---ATTGACCCGACCATGATA--GATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAG-AT-TGTGG----CAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATT----ATA-AGA-GAGTCGGGATATTTCCTTTAGATATCGTAATAAAGT-CGTAGT--TTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT----GCGC-----T-TAAGCTTGGGGCCA--CCCACAA---TGGGAAAAaagtcacatgcatacaaataaattgaagccaaaaaaaatttgaaatatacatttaacgaa
gi|8 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtGTAGAAAAGTGCCAGGAGAACCAGGCCAGGGAGGAG---GACCATACTATTGAGG-AGGCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATGA---------T----CA---ACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATATTTAG----G--GGGA----TCCTC---ATACCGCAATGATAGGCGAAGT--TTCG-GGA-CAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAAGCGTTATG-TATGCTGAGATCAAGTCCCCtgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : tgCAAGTCTGGTACCCGCACAAGCAG---------CGGCAA-AGACGAT----CTAAACCAACTATCCAGAC-CGTGAT-ACACC-A-AAGATTCTTGGCTTGTA-TAACT--CGGTAGCAATGATATGCAC--ACAAATAATGACAACAAAGAAATA
gi|7 : gttaCAAGTCTGGTACCCGCACAAGCAG---------CGGCAA-AGACGACTAAACCAAC--T---ATCCAGAC-CGTGAT-ACACC-A-AAGATTCTTGGCTTGTA-TAACT--CGGTAGCAT---GATATGCACACAAATAATGACAACAAAGAAATAttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|5 : gttaCTCTGTTGACGACGGAGGAT----CCAAC--G---ATGCACACTCGTGATACGCCTTA-AAATG-CTTGGCTTGttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|10 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacACGACGGAGGAT----CCAAC--G---ATGCACACTCGTGATACGCCTTA-AAATG-CTTGGCTTGCTTTAct
gi|15 : GTTATATTTGGTG-ATGTTAATGTCCAAGACCT-TCAAA----------G-A-CCGAGTTAAT-GTT-GAAACAAATTGATAG--CGAATTAGGGGC--TGTCCTCCAAAATGAATAAACAT--GGGGCCTGT--TTTTAATAGGC-GTATTTGTATGAAGTCATGTATTGC-cctattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|3 : TACAATTGGTG-CAGTCAAGGCCCAATACAT-TCAAACCTAGTAGATG-A-ACGAATTAAT-------AACGAATTGAGGG--GGAGT-GT-GGC--TGTCGCCCAAAATGGATAAACAA--AGGGCTTAT--TTTTGATGGGT-GTATTTGTAGATGATAGTGCATTGCTTGCAA-GGG--GG-A----GG--G--GGCATGTTGGATGCCGGAAT------AAAGTG---------TTGTTCCGACGACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTT-GAA-TTTGGCCTGAAGCAATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAG-TGCCCTTGGATAGTGCGAATTCGCGTACCTGCAAGA----ATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTG--------------GTTTGTAATGTGGAAATAAT-CCAATGGAGGAGGTGTAAAGTAGTAGAGAGCT-GCGAGTCCTTACGACT-GTGTGTCCTTAGTCT-TTACG----AGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTT
gi|7 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTACAATTGGTG-CCGTCAAGGCCCAATACAT-TCAA------------------ACCTAGTAGAT-G-AACGAATTAATAA--CGAATg
gi|6 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATAATTGGGGACTAT-AAT-CTTAAGA-TA-TCAAG----------GCA-CCGATTTAAT-GCC-GCAATAAGTTGATAG--
gi|2 : aaTGTCAA-ACCCAAGGATA-ACAAA----------C-A-CCTGTTTAAT-ATTAGCACAAAATTGATAAACTGAGTC---------GCCCC---AAACG--TGAACAA--GGGCCCCTT--TTTTGAAGGGTGGGATTCATTGAAAGC-CTACATCG--AACGA-TGG--AGCATAACTGTTG--G-C--ATGGGATGCCAGGATAAACGCA-ATAA---------CTGTTATG-----TAACTGGTCAGTCAT-AAATGGTATGATAGTgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|12 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagGTCAA-ACCCAAGGATAATCAAA----------C-ACGTGATC-AAT-ATT-GCCCAAAATTGATAA--CGAATTA-AGGGGGTGTCTCTCAAAATGAGCAAA-----GGGCCCCTT--TTTTGACGGGT-GGGATTGCATGAAAGCCTACATAGC-CGCAG-ATG--GGCA----TGCTGTTG-C--ATGGGATGCtgttgtatacgatggag
gi|13 : CAAAATGAA----CAA--AGGGCCCCT--TTTTGCCGGTT-GGGCTTACATGAAAGCCTACATAGC-CGCAG-ATG--GGCA----TGCTGTTG-C--ATGGGATGCCAAGATA----caagatcacgaataactgattatt
gi|6 : AAATAATTGGGGACTATAATCTTAA-------GATATCAAGGCACCGATTTAATGC-CGCAATAAGTTGATA----GGTAA--AACA-AA-GGATGC----ATAGC--CAGAAAGATACCCGTGTTGTTTGAATGTCCAACTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTT-GCCTGAAGTAA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTC----ACCTGTACTCAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATATAT--TG----GATTA------CTCCTA---TA-----------TTTAAAAGAGGTGTAAAGTTATGG-ACATCCGTGTATCTTTATG-ATCGAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGatgaataacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|14 : ACAAGTAATTTGGTTTGTAATGTTTGAATTTTTCCGTTGGAGGAAGTGTAAAGTAGTAG-AGAGTCGCGAGTCCTTACGACT-GTGTGTCC
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GGTGTTATATCAAGTCTGGTACTAAACCGCACAAGATAGCGGCAAAGACGATCATAAACCAACTATTCAGACCGTGAATGCGCACCAAAGATTTCTTGCTTGTATAGCTCGGTAGCAATGATAATGCACCAATAAATACAAGAAATAGTTGCGCTAAGTTGGTTTAAAGGAAATTGTAACAAAATAATGGAAAGTAAAA
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Unaligned ( gi|19 ): ACCTAGGCAATGACGAGGACCATACAATAGTGGTGGTAGGAAACATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 33333333 111 222222222 111 111111 11 1111 111 2222222222 111 11 444444444444444444 1 222222 11111 1111111111 5555555 333333 1 222 1 11 4444 11111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111 222 111 1111111 55555555555555 222222 222222 444444444444444444444 33333 11 2 1 1 11 111 2222 6666666 22222 444444444 11 8888888888888888888888888888888888 1 2222222
lowQualScore : 5 8 8 222 5 99 1 33333333 0 000 2 22 1 77 77 1 0 1 1 666666666 777 444 3 1 99 1 1 8 999999 11 8 7777 444 1 1 3 3333333333 222 3 0 2 11 3 2 000000000000000000 1 0 555555 88888 8888888888 0000000 8 0 000000 5 1 2 5 0 999 8 6 5 2 11 8 99 0000 22222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 2222 111 5 555 333 4 1 0 8888888 55 4 77777777777777 3 1 1 1 2 6 1 1 1 1 99 333333 1 8 999999 33 666666666666666666666 11 66666 1 6 1 00 0 3 0 6 44 2 7 2 55 1 1 333 0 0 0 0 1 7 1 22 1 0 3333 1111111 1 2 2 2 44 33333 1 22 555555555 33 1111111111111111111111111111111111 6 1 1 3 0 1 1 5555555 3 1 1 1 0 1 0 22 0 1 0 1 1
lowQualScore : . . . ... . .. . ........ . ... . .. . .. .. . . . . ......... ... ... . . .. . . . ...... .. . .... ... . . . .......... ... . . . .. . . .................. . . ...... ..... .......... ....... . . ...... . . . . . ... . . . . .. . .. .... ........ ........................................................................................................................................ . .... ... . ... ... . . . ....... .. . .............. . . . . . . . . . . .. ...... . . ...... .. ..................... .. ..... . . . .. . . . . .. . . . .. . . ... . . . . . . . .. . . .... ....... . . . . .. ..... . .. ......... .. .................................. . . . . . . . ....... . . . . . . . .. . . . . .
lowQualScore : 0 0 8 444 2 22 0 33333333 7 000 1 33 0 99 99 0 7 0 0 666666666 000 000 2 0 00 4 4 0 888888 00 0 0000 000 4 8 8 6666666666 444 8 8 2 00 2 5 888888888888888888 0 0 888888 00000 6666666666 3333333 9 7 777777 3 0 0 7 1 999 7 6 5 5 00 8 00 2222 44444444 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7777 000 7 000 777 3 0 6 6666666 77 0 44444444444444 2 7 7 0 2 7 0 0 0 0 99 000000 0 0 444444 22 666666666666666666666 22 00000 0 5 2 22 0 0 0 5 22 5 3 0 00 0 0 777 7 7 7 7 0 3 0 00 0 2 0000 8888888 0 0 0 0 00 55555 0 00 000000000 88 0000000000000000000000000000000000 5 0 0 2 0 2 0 3333333 7 0 0 0 7 0 7 00 7 0 7 0 0
consensus : ATCCAGCCTGGCACGAATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--A-G-G-AGGAG---GACCANACTATNGAGG-NGGCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TGCAGCA---ANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAAN-GT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGT-CG-AACCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-ACCTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAATGA-NATGC--ACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GGCTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCATGAAANCNTGCATNGC-CGCA------AAGGGGCATG-CTGTTG-C-ATGGGATGCCGGGATA---GC-----AGATA-----GTTGTTCCGA-CG-CCAACTNGTCGGTC-TTGGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGCAA-CAAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGCGTACCTGC----AAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTGGA-----T-GCTTNTAATGT-C-G-AATAAT---CCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCAGCCTGGCATGAATCTTGTT-CATNGCCCTGACATT-TNTGGAAAA--GCNCCAGGAGAACCTAGGC--A-G-G-AGGAA---GACCATACTATNGAGG-AGGCGG--GGAACATAGNACGAATTTCTAACAATGTAGNAATNAGAATC----TGCGNCA---AGCGCTCTGTNGTCGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATNTAG-TGAG--GGG-A----TCCTC---ATACCGTAATAAN-GT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCTATATCCCTGC--CACCATATCG-A-G----CGT---T---TANGC-TGAGGT-CG-AGCCCCCAAGTCTGGTAN----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACGATCCANACTCGTGA-TACN-ACCTAAAAANTCTTGGCTTGTATTAACTC--GGTAGCANTGA-NATGCGCACACAAATAA--TGACAACAAAGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCGANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GGCTGTCCCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGTANGAAANCNTACATNGC-CGCA------AANGGGCATG-CTGTTG-CAATGGGATGCCGGGATA---GC-----AGANA-----GTTGTTNCGA-CG-CNAACTCGTCAGTC-TT-GAACGTT-TGATCGTNAGTTGGAATTTTGGCCTGAAGCAATCAAATGNCATNGAACTNCGATGTGCTTCGAGCAGNGTTGCNCTTGNNCAGNGCGAATTCGCGTACCTGCANNNAAGAATGCNTGGAACGCCAGCGTATTTNNGGNAGCTNNGAATAGCCTGGTTTCATGTANTTTGGA-----TAGTTCGTAATGT-N-G-AAT--T---CCGTTGGAGGAGGTGTAAAGTAGTAGANANTCGCGAGTCCTTACGACT-GTGTGTCCTTNGCNCACCNCGTAGGAGCTTTNTNATGANAGAGNGGCCNNTAGGGTCNACGTTGTGAANTGTTNTAG
gi|1 : ATCCAGCCTG-CACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGC--A-G-GGAGGAA---GACCAAAATATGGAGG-AGGCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TGTATCA---ATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATTAGGTAG-CGAG--GGG-A----TCCTC---ATATCGCAATAAT-ATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCCA-ATCCCCCAAGTCTGGTAA----AAGCGCAA---G-TAGACGCTCTT-TTGACAATGGAGGACC------CAAAAATCCAGACTCGTGA-T-CG-ACCTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCATTGA-GATATA---ACAATTAA--T---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTT-------AT-A---GGCTGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGTGG-ATTTGCAGGAAGTGATGCATTGC-CACA------AAGGGGCATG-TTG--GACAATTGGATGCTGGAATA----C-----AGAGA-----GTTGTTCCGACCC-CCAATTGGTCGGTG-TTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAACGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC----ACCT----------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAACAAGTAGCTTCTAATGTAC-G-AATAAT---CCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--CCTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAA---GATA---GC-------GGCAA-AGACGATCATAAACCAACTATTCAGAC-CGTGAATGCGCACCAAAGATTTCTTG-CTTGTAT-AGCTC--GGTAGCAATGATAATG----CACCAATAA--ATAC----AAGAAATAattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATT-------AAGG---GGGTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGTGG-GATTGCATGAAAGCCTACATAGC-CGCA------GATGGGCATG-CTGTTG-C-ATGGGATGCCAAGATC---AC-----GAATA-----ACTGgttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTTGG-GCTTACATGAAAGCCTACATAGC-CGCA------GATGGGCATG-CTGTTG-C-ATGGGATGCCAAGATA---attatt
gi|14 : TGGATAGTGCGAATTAGCGTACCTGCC----AGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTGG---------TTTGTAATGT-TTG-AAT--TTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCatgaataacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATT-------AG-G---GGCTGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGCGT-ATTTGTATGAAGTCATGTATTGC-
gi|19 : ACCTAGGC--A-ATG-ACGAG---GACCATACAATAGTGG-TGGTAG--GAAACATA
gi|2 : ATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC--A-----ATTGACCCGACCATG--ATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGA--T----TGTGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATTATA-AG-AGAGTCGGG-ATATTTCCTTTAGATATCGTAATAAA-GT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGC-C---ACCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACT-------G--A---G----TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATTCAT-TGAAAGCCTACATCGA--ACG------ATGGAGCATAACTGTTG-GCATGGGATGCCAGGATAAACGC-----A-ATA-----ACTGTTATG------TAACTGGTCAGTC-AT-AAATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAA---G-CA---GC-------GGCAA-AGACGATCTAAAC-CAACTATCCAGAC-CGTGA-TAC--ACC-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAATGA-TATGC--ACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGA--GTGTGGCTGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGTGT-ATTTGTAGATGATAGTGCATTGCTTGCAAGGGGGAGGGGGCATG-TT----------GGATGCCGGAAT-----------AAAGT-----GTTGTTCCGA-CGACAAATTTGACAATCTTT-GAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGCAATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAG-TGCCCTTGGATAGTGCGAATTCGCGTACCTGC----AAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTG---------GTTTGTAATGT-G-GAAATAAT---CCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTAGT---CTT--TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATG-ACGAG---GACCATACGATAGAGG-TGGTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TGCAGCA---GGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATTAAGAAGTTGGG--AGG-A----TTTTC---GTACCGTAATAAG-GT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGT-TGAAACCACCAAGTCTGGTTG----CCGCATAGGTTG-CT---GCTC-TCTTGACAATGGAGGATC------CAACAATCCAAACTCTTGC-TACC--TCTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGT-CACATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctatccattctacccctgTCTTATT-CATAGCCCTAACGTT------------GCT---AGAGA-TCTAGAC---------GGAA----ATCAAACTACTGAGA-TGGCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATGCAGCA---AACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTAATG--A-TGAG--AAA-A----TGATT---ATAAC--AAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCAatttgaaatatacatttaacgaa
gi|5 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttCTC-TGTTGACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--CCTTAAAATGCTTGGCTTGatagaaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aaGGATGC----ATA---GCCAGAAAGATACCCGTGTTGTTTGAA-TGTCCAACTCGTCTGTT-TTAGAACGTT-TGATTGTGAGTTGGAATTTT-GCCTGAAGTA---AAATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTC----ACCTGTACTCAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATATA--TTGGA-----TTACTCCT-ATAT-----------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaCAAGTCTGGTAC----CCGCACAA---G-CA---GCGG----CAAAGACGACTAAAC------CAACTATCCAGAC-CGTGA-TAC--ACC-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA-TGA-TATGC--ACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-G-AGGAG---GACCATACTATTGAGG-AGGCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATGA-------------TCA---ACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATAT-TTAG--GGGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGAT-CA-AGTCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-G-AGGAA---GACCAAACTATGGAGG-AGGCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222222222 111 22222 1111 11 1111 111 2222222222 111 11 444444444444444444 1 22222 1111 1111111111 5555555 333333 1 222 1 11 111 11111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 111 1111111 44444444444444 11 111 44444444444444444444 222222222 1 1 1 1 222 111 1111 11 2222 444444444 11 777777777 444444444444 1
lowQualScore : 2 5 3 2 8 8 33 1 99 3 4444444444 1 1 0 1 5 1 000 77 1 0 1 1 3 1 00000 8 1 1 1 1 1 8 1 7777 11 8 7777 444 6 3 3333333333 222 3 0 1 11 3 2 000000000000000000 1 0 44444 7777 8888888888 0000000 8 0 000000 1 2 5 0 555 5 8 1 5 11 777 99 44 0 22222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 111 5 555 333 1 1 0 8888888 55 4 99999999999999 8 1 1 1 1 2 6 55 666 1 8 8 3 999 8 8 99 33 33333333333333333333 333333333 0 1 4 0 2 1 0 1 44 2 7 6 3 444 333 0 7 1 0 6666 22 3 1 2222 0 1 555555555 22 000000000 1 3 444444444444 6 1 1 3 0 1 7777 1 6 1 1 3 1
lowQualScore : . . . . . . .. . .. . .......... . . . . . . ... .. . . . . . . ..... . . . . . . . . .... .. . .... ... . . .......... ... . . . .. . . .................. . . ..... .... .......... ....... . . ...... . . . . ... . . . . .. ... .. .. . ........ ............................................................................................................... .... ... . ... ... . . . ....... .. . .............. . . . . . . . .. ... . . . . ... . . .. .. .................... ......... . . . . . . . . .. . . . . ... ... . . . . .... .. . . .... . . ......... .. ......... . . ............ . . . . . . .... . . . . . .
lowQualScore : 5 0 0 5 0 8 66 0 22 3 6666666666 7 0 3 0 7 0 000 99 0 7 0 0 2 0 22222 0 0 0 0 4 4 0 0 8888 00 0 0000 000 4 8 6666666666 444 8 8 4 00 2 5 888888888888888888 2 0 55555 0000 6666666666 3333333 9 7 777777 0 0 7 1 666 7 7 4 5 00 000 00 00 8 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 000 7 000 777 3 0 6 6666666 77 0 44444444444444 0 0 7 7 0 2 7 88 888 0 0 0 2 222 0 0 22 22 88888888888888888888 222222222 0 0 2 2 8 0 0 0 22 5 3 7 3 000 777 7 3 0 2 5555 00 0 0 5555 2 0 000000000 88 000000000 0 2 000000000000 5 0 0 2 0 2 7777 0 7 0 0 7 0
consensus : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-G-AGGAGGACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAAN-GT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGT-GGATTTGCA--TGAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGATA---GC-----GAATA-----GTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTNGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTGGA-----T-GCTTNTAATGT-C-GAA-TAAT-CCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCAGCCTGGCACGAATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--A-G-G-AGGAGGACCANACTATNG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAAN-GT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGT-GGATTTGCA--TGAAANCNTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGATA---GC-----AGATA-----GTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTGGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CAAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTGGA-----T-GCTTNTAATGT-C-GAA-TAAT-CCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
gi|1 : ATCCAGCCTG-CACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGC--A-G-GGAGGAAGACCAAAATATGG-AGGAG---GCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TG-TATCAATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATTAGGTAG-CGAG--GGG-A----TCCTC---ATATCGCAATAAT-ATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCC-AATCCCCCAAGTCTGGTAA----AAGCGCAA---G-TAGACGCTCTT-TTGACAATGGAGGACC------CAAAAATCCAGACTCGTGA-T-CG-AC-CTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCAT--TGA-GATATA-ACAATTAA--T---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTT-------AT-A---GG-CTGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGT-GGATTTGCA--GGAAGTGATGCATTGCC-ACAAAGGGGCAT-GTTG---GACAATT--GGATGCTGGAATA----C-----AGAGA-----GTTGTTCCGACCC-CCAA-TTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAA-CGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC------ACCT------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAACAAGTAGCTTCTAATGTAC-GAA-TAAT-CCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAA---GATA---GC-------GGCAA-AGACGATCATAAACCAACTATTCAGAC-CGTGAATGCGCAC-CAAAGATTTCTTG-CTTGTAT-AGCTC--GGTAGCAA--TGATAATGCAC-C-AATAA--ATAC----AAGAAATAGattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATT-------AAGG---GG-GTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGT-GGGATTGCA--TGAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGATC---AC-----GAATA-----ACTGttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTT-GGGCTTACA--TGAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGATA---AT-----GAATA-----attatt
gi|14 : TGGATAGTGCGAATTAGC--GTACCTGCCAGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTGG---------TTTGTAATGT-TTGAA-TTTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATT-------A--G---GGGCTGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGC-GTATTTGTA--TGAAGTCATGTATTGC
gi|19 : ACCTAGGC--A-ATG-ACGAGGACCATACAATAG-TGGTG---GTAG--GAAACATA
gi|2 : ATCCATTCTACCCCTGATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC--A-A-T-----TGACCCGACCATGATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGATTG----TGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATTATA-AG-AGAGTCGGG-ATATTTCCTTTAGATATCGTAATAAA-GT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGCC---A-CCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACT-------G--A---G-----TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATT--CAT-TGAAAGCCTACATCG-A-ACGATGGAGCATAACTGTTGG-C-ATG--GGATGCCAGGATAAACGC-----A-ATA-----ACTGTT---A-TG--TAA-CTGGTCAGTCAT-AAATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAA---G-CA---GC-------GGCAA-AGACGATCTAAAC-CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAA--TGA-TATGCACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGA--GTGTGG-CTGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGT-GTATTTGTAGATGATAG--TGCATTGCTTGCAAGGGGGAGG-G--G---G-C-ATGTTGGATGCCGGAATA----------AAGT------GTTGTTCCGA-CG-ACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGC-AATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAGT-GCCCTTGGATAGTGCGAATTCGC--GTACCTGCAAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTGG---------TTTGTAATGT-G-GAAATAAT-CCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTA----GTCTT-TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATCCATTCTACCCCTGACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATG-ACGAGGACCATACGATAG-AGGTG---GTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TG-CAGCAGGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATTAAGAAGTTGGG--AGG-A----TTTTC---GTACCGTAATAAG-GT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGTTGAAA-CCACCAAGTCTGGTTG----CCGCATAGGTTG-CT---GCTC-TCTTGACAATGGAGGATC------CAACAATCCAAACTCTTGC-TAC---CTCTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGTCA-CATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctTCTTATT-CATAGCCCTAACGTT-GCTAGAGA---------------TCTAGAC--G-G-A-A-----ATCAAACTACTG-AGATG---GCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATG-CAGCAAACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTAATG--A-TGAG--AAA-A----TGATT---ATA--ACAAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCAatttgaaatatacatttaacgaa
gi|5 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttCTC-TGTTGACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGatagaaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aa--GGATGC----ATA---GCCAGAAAGATACCCGTGTTGTTTGAA-TGTCCAA-CTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTTG-CCTGAAGT-AA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTCACCTGTACT--CAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATATA--TTGGAT----T-ACTCCT-ATAT---------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaCAAGTCTGGTAC----CCGCACAA---G-CA---GCGG----CAAAGACGACTAAAC------CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA---TGA-TATGCACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-G-AGGAGGACCATACTATTG-AGGAG---GCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATGA---------T-----CAACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATAT-TTAG--GGGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGATCA-AG-TCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-G-AGGAAGACCAAACTATGG-AGGAG---GCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 111 22222 1111 11 1111 111 2222222222 111 11 444444444444444444 1 22222 1111 1111111111 5555555 333333 1 222 1 11 111 11111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 111 1111111 55555555555555 1111 111 33333333333333333333 222222222 1 1 1 222 111 1111 11 2222 444444444 11 777777777 444444444444 1
lowQualScore : 1 33 2 8 8 33 1 99 3 222222 7 888 1 0 1 5 1 000 77 1 0 1 11 55555 8 1 1 1 1 1 8 1 7777 8 11 7777 444 6 3 3333333333 222 3 0 1 11 3 2 000000000000000000 1 0 44444 7777 8888888888 0000000 8 0 000000 1 2 5 0 555 5 8 1 5 11 777 99 44 0 22222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 111 5 555 333 1 1 0 8888888 55 4 77777777777777 1 1 1 1 2 6 0000 55 1 8 8 3 999 8 8 99 33 33333333333333333333 333333333 0 1 4 0 33 1 0 1 44 2 7 6 3 333 333 0 7 1 0 6666 22 3 1 2222 0 1 555555555 22 000000000 1 3 444444444444 6 1 1 3 0 1 7777 1 6 1 1 3 1
lowQualScore : . .. . . . .. . .. . ...... . ... . . . . . ... .. . . . .. ..... . . . . . . . . .... . .. .... ... . . .......... ... . . . .. . . .................. . . ..... .... .......... ....... . . ...... . . . . ... . . . . .. ... .. .. . ........ ............................................................................................................... .... ... . ... ... . . . ....... .. . .............. . . . . . . .... .. . . . . ... . . .. .. .................... ......... . . . . .. . . . .. . . . . ... ... . . . . .... .. . . .... . . ......... .. ......... . . ............ . . . . . . .... . . . . . .
lowQualScore : 0 55 5 0 8 66 0 22 3 999999 9 333 0 3 7 7 0 000 99 0 7 0 88 22222 0 0 0 0 4 4 0 0 8888 0 00 0000 000 4 8 6666666666 444 8 8 4 00 2 5 888888888888888888 2 0 55555 0000 6666666666 3333333 9 7 777777 0 0 7 1 666 7 7 4 5 00 000 00 00 8 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 000 7 000 777 3 0 6 6666666 77 0 44444444444444 0 7 7 0 2 7 8888 00 0 0 0 2 222 0 0 22 22 88888888888888888888 222222222 0 0 2 2 55 0 0 0 22 5 3 7 3 777 777 7 3 0 2 5555 00 0 0 5555 2 0 000000000 88 000000000 0 2 000000000000 5 0 0 2 0 2 7777 0 7 0 0 7 0
consensus : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGA-G--GGGA----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GGCTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AAC--G-AA---TA-----GTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTGGA-----T-GCTTNTAATGT-C-GAA-TAAT-CCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGA-G--GGGA----TCCTC---ATACCGCAATAA-NGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GGCTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AGC--G-AA---TA-----GTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTNGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTGGA-----T-GCTTNTAATGT-C-GAA-TAAT-CCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
gi|1 : ATCCAGCCTGC-ACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGCA-G-G-GAGGAA--GACCAAAATATGG-AGGAG---GCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TG-TATCAATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATTAGGTAG-CGA-G--GGGA----TCCTC---ATATCGCAATAA-TATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCC-AATCCCCCAAGTCTGGTAA----AAGCGCAA---G-TAGACGCTCTT-TTGACAATGGAGGACC------CAAAAATCCAGACTCGTGA-T-CG-AC-CTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCAT--TGA-GATATA-ACAATTAA--T---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTT-------AT-A---GGCTGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGTGG-ATTTGCA--G-GAAGTGATGCATTGCC-ACAAAGGGGCAT-GTTG---GACAATT--GGATGCTGGAAT-A-C--A-GA---GA-----GTTGTTCCGACCC-CCAA-TTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAA-CGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC------ACCT------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAACAAGTAGCTTCTAATGTAC-GAA-TAAT-CCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAA---GATA---GC-------GGCAA-AGACGATCATAAACCAACTATTCAGAC-CGTGAATGCGCAC-CAAAGATTTCTTG-CTTGTAT-AGCTC--GGTAGCAA--TGATAATGCAC-C-AATAA--ATAC----AAGAAATAGattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATT-------AAGG---GGGTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGTGG-GATTGCA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-CAC--G-AA---TA-----ACTGttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTTGG-GCTTACA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-AAT--G-AA---TA-----attatt
gi|14 : TGGATAGTGCGAATTAGC--GTACCTGCCAGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTGG---------TTTGTAATGT-TTGAA-TTTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATT-------AG-G---GGCTGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGCGT-ATTTGTA--T-GAAGTCATGTATTGC
gi|19 : ACCTAGGC--A-ATGACGAG--GACCATACAATAG-TGGTG---GTAG--GAAACATA
gi|2 : ATCCATTCTACCCCTGATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC----------AATTGACCCGACCATGATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGATTG----TGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATTATA-AG-AGA-GTCGGGATATTTCCTTTAGATATCGTAATAA-AGT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGCC---A-CCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACT-------G--A---G----TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATT--CA--TTGAAAGCCTACATCG-A-ACGATGGAGCATAACTGTTGG-C-ATG--GGATGCCAGGATAAAC--GCAA---TA-----ACTGTT---A-TG--TAA-CTGGTCAGTCATA-AATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAA---G-CA---GC-------GGCAA-AGACGATCTAAAC-CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAA--TGA-TATGCACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGA--GTGTGGCTGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGTGT-ATTTGTAGAT-GATAG--TGCATTGCTTGCAAGGGGGAGG-G--G---G-C-ATGTTGGATGCCGGAAT-AA-----AG---T------GTTGTTCCGA-CG-ACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGC-AATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAGT-GCCCTTGGATAGTGCGAATTCGC--GTACCTGCAAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTGG---------TTTGTAATGT-G-GAAATAAT-CCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTA----GTCTT-TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATCCATTCTACCCCTGACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATGACGAG--GACCATACGATAG-AGGTG---GTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TG-CAGCAGGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATTAAGAAGTTGG-G--AGGA----TTTTC---GTACCGTAATAA-GGT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGTTGAAA-CCACCAAGTCTGGTTG----CCGCATAGGTTG-CT---GCTC-TCTTGACAATGGAGGATC------CAACAATCCAAACTCTTGC-TAC---CTCTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGTCA-CATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctTCTTATT-CATAGCCCTAACGTT-GCTAGAGA---------------TCTAGAC--G-G-AA-------ATCAAACTACTG-AGATG---GCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATG-CAGCAAACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTAATG--A-TGA-G--AAAA----TGATT---ATA--ACAAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCAatttgaaatatacatttaacgaa
gi|5 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttCTC-TGTTGACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGatagaaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aa--GGATGC----AT-AGCCAG-AAAGATACCCGTGTTGTTTGAA-TGTCCAA-CTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTTG-CCTGAAGT-AA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTCACCTGTACT--CAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATATA--TTGGAT----T-ACTCCT-ATAT---------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaCAAGTCTGGTAC----CCGCACAA---G-CA---GCGG----CAAAGACGACTAAAC------CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA---TGA-TATGCACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-GAGGAG--GACCATACTATTG-AGGAG---GCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATG---AT-----------CAACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATAT-TTAGG--GGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGATCA-AG-TCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-GAGGAA--GACCAAACTATGG-AGGAG---GCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 111 22222 1111 11 1111 111 2222222222 111 11 444444444444444444 1 22222 1111 1111111111 5555555 333333 1 222 1 11 111 11111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 111 1111111 55555555555555 1111 111 11 111111 222222222 1 1 1 222 111 1111 11 2222 444444444 11 777777777 333333333333 1
lowQualScore : 1 33 2 8 8 33 1 99 3 222222 7 888 1 0 1 5 1 000 77 1 0 1 11 55555 8 1 1 1 1 1 8 1 7777 8 11 7777 444 6 3 3333333333 222 3 0 1 11 3 2 000000000000000000 1 0 44444 7777 8888888888 0000000 8 0 000000 1 2 5 0 555 5 8 1 5 11 777 99 44 0 22222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 111 5 555 333 1 1 0 8888888 55 4 77777777777777 1 1 1 1 2 6 0000 55 1 8 8 3 999 8 8 11 444444 0 333333333 0 1 4 0 33 1 0 1 44 2 7 6 3 333 333 0 7 1 0 6666 22 3 1 2222 0 1 555555555 22 222222222 1 3 888888888888 6 1 1 3 0 1 7777 1 6 1 1 3 1
lowQualScore : . .. . . . .. . .. . ...... . ... . . . . . ... .. . . . .. ..... . . . . . . . . .... . .. .... ... . . .......... ... . . . .. . . .................. . . ..... .... .......... ....... . . ...... . . . . ... . . . . .. ... .. .. . ........ ............................................................................................................... .... ... . ... ... . . . ....... .. . .............. . . . . . . .... .. . . . . ... . . .. ...... . ......... . . . . .. . . . .. . . . . ... ... . . . . .... .. . . .... . . ......... .. ......... . . ............ . . . . . . .... . . . . . .
lowQualScore : 0 55 5 0 8 66 0 22 3 999999 9 333 0 3 7 7 0 000 99 0 7 0 88 22222 0 0 0 0 4 4 0 0 8888 0 00 0000 000 4 8 8888888888 444 8 8 4 00 2 5 888888888888888888 2 0 55555 0000 6666666666 3333333 9 7 777777 0 0 7 1 666 7 7 4 5 00 000 00 00 8 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 000 7 000 777 3 0 6 6666666 77 0 44444444444444 0 7 7 0 2 7 8888 00 0 0 0 2 222 0 0 00 000000 8 222222222 0 0 2 2 88 0 0 0 22 5 3 7 3 777 777 7 3 0 2 5555 00 0 0 5555 2 0 000000000 88 222222222 0 2 000000000000 5 0 0 2 0 2 7777 0 7 0 0 7 0
consensus : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGA-G--GGGA----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GGCTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG-A-----T-GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGA-G--GGGA----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GGCTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTGGA-----T-GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
gi|1 : ATCCAGCCTGC-ACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGCA-G-G-GAGGAA--GACCAAAATATGG-AGGAG---GCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TG-TATCAATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATTAGGTAG-CGA-G--GGGA----TCCTC---ATATCGCAATAA-TATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCC-AATCCCCCAAGTCTGGTAA----AAGCGCAA---G-TAGACGCTCTT-TTGACAATGGAGGACC------CAAAAATCCAGACTCGTGA-T-CG-AC-CTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCAT--TGA-GATATA-ACAATTAA--T---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTT-------AT-A---GGCTGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGTGG-ATTTGCA--G-GAAGTGATGCATTGCC-ACAAAGGGGCAT-GTTG---GACAATT--GGATGCTGGAAT--ACA-GAGAGTTGTTCCGACCC-CCAA-TTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAA-CGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC------ACCT------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAACAAGTAGCTTCTAATG-TACG-AA-TAATCCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAA---GATA---GC-------GGCAA-AGACGATCATAAACCAACTATTCAGAC-CGTGAATGCGCAC-CAAAGATTTCTTG-CTTGTAT-AGCTC--GGTAGCAA--TGATAATGCAC-C-AATAA--ATAC----AAGAAATAGattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATT-------AAGG---GGGTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGTGG-GATTGCA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-CACG-AATAACTGttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTTGG-GCTTACA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-AATG-AATAattatt
gi|14 : TGGATAGTGCGAATTAGC--GTACCTGCCAGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTG---------GTTTGTAATGTT-TG-AATTTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATT-------AG-G---GGCTGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGCGT-ATTTGTA--T-GAAGTCATGTATTGC
gi|19 : ACCTAGGC--A-ATGACGAG--GACCATACAATAG-TGGTG---GTAG--GAAACATA
gi|2 : ATCCATTCTACCCCTGATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC----------AATTGACCCGACCATGATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGATTG----TGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATTATA-AG-AGA-GTCGGGATATTTCCTTTAGATATCGTAATAA-AGT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGCC---A-CCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACT-------G--A---G----TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATT--CA--TTGAAAGCCTACATCG-A-ACGATGGAGCATAACTGTTGG-C-ATG--GGATGCCAGGATAAACGCAATAACTGTT---A-TG--TAA-CTGGTCAGTCATA-AATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAA---G-CA---GC-------GGCAA-AGACGATCTAAAC-CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAA--TGA-TATGCACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGA--GTGTGGCTGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGTGT-ATTTGTAGAT-GATAG--TGCATTGCTTGCAAGGGGGAGG-G--G---G-C-ATGTTGGATGCCGGAAT-AA---AGT-GTTGTTCCGA-CG-ACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGC-AATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAGT-GCCCTTGGATAGTGCGAATTCGC--GTACCTGCAAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTG---------GTTTGTAATG-T-GGAAA-TAATCCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTA----GTCTT-TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATCCATTCTACCCCTGACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATGACGAG--GACCATACGATAG-AGGTG---GTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TG-CAGCAGGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATTAAGAAGTTGG-G--AGGA----TTTTC---GTACCGTAATAA-GGT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGTTGAAA-CCACCAAGTCTGGTTG----CCGCATAGGTTG-CT---GCTC-TCTTGACAATGGAGGATC------CAACAATCCAAACTCTTGC-TAC---CTCTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGTCA-CATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctTCTTATT-CATAGCCCTAACGTT-GCTAGAGA---------------TCTAGAC--G-G-AA-------ATCAAACTACTG-AGATG---GCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATG-CAGCAAACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTAATG--A-TGA-G--AAAA----TGATT---ATA--ACAAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCAatttgaaatatacatttaacgaa
gi|5 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttCTC-TGTTGACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGatagaaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aaGTTGTTTGAA-TGTCCAA-CTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTTG-CCTGAAGT-AA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTCACCTGTACT--CAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATATA--TTGGAT----T-ACTCCT-ATA-T--------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaggatgcatagccagaaagatacccgtCAAGTCTGGTAC----CCGCACAA---G-CA---GCGG----CAAAGACGACTAAAC------CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA---TGA-TATGCACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-GAGGAG--GACCATACTATTG-AGGAG---GCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATG---AT-----------CAACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATAT-TTAGG--GGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGATCA-AG-TCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-GAGGAA--GACCAAACTATGG-AGGAG---GCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 111 22222 1111 11 1111 111 2222222222 111 11 444444444444444444 1 22222 1111 1111111111 5555555 333333 1 222 1 11 111 11111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 111 1111111 44444444444444 1111 111 11 111111 222222222 1 1 1 1 222 111 1111 11 2222 444444444 7777777777 333333333333 1
lowQualScore : 1 33 2 8 8 33 1 99 3 222222 7 888 1 0 1 5 1 000 77 1 0 1 1 3 1 00000 8 1 1 1 1 1 8 1 7777 11 8 7777 444 6 3 3333333333 222 3 0 1 11 3 2 000000000000000000 1 0 44444 7777 8888888888 0000000 8 0 000000 1 2 5 0 555 5 8 1 5 11 777 99 44 0 22222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 111 5 555 333 1 1 0 8888888 55 4 99999999999999 8 1 1 1 1 2 6 0000 55 1 8 8 3 999 8 8 11 444444 0 333333333 0 1 4 0 33 1 0 1 44 2 7 2 3 333 333 0 7 1 0 6666 22 3 1 2222 0 1 555555555 3 1111111111 1 3 888888888888 6 1 1 3 0 1 7777 1 6 1 1 3 1
lowQualScore : . .. . . . .. . .. . ...... . ... . . . . . ... .. . . . . . . ..... . . . . . . . . .... .. . .... ... . . .......... ... . . . .. . . .................. . . ..... .... .......... ....... . . ...... . . . . ... . . . . .. ... .. .. . ........ ............................................................................................................... .... ... . ... ... . . . ....... .. . .............. . . . . . . . .... .. . . . . ... . . .. ...... . ......... . . . . .. . . . .. . . . . ... ... . . . . .... .. . . .... . . ......... . .......... . . ............ . . . . . . .... . . . . . .
lowQualScore : 0 55 5 0 8 66 0 22 3 999999 9 333 0 3 7 7 0 000 99 0 7 0 0 2 0 22222 0 0 0 0 4 4 0 0 8888 00 0 0000 000 4 8 8888888888 444 8 8 4 00 2 5 888888888888888888 2 0 55555 0000 6666666666 3333333 9 7 777777 0 0 7 1 666 7 7 4 5 00 000 00 00 8 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 000 7 000 777 3 0 6 6666666 77 0 44444444444444 0 0 7 7 0 2 7 8888 00 0 0 0 2 222 0 0 00 000000 8 222222222 0 0 2 2 88 0 0 0 22 5 3 0 3 777 777 7 3 0 2 5555 00 0 0 5555 2 0 000000000 2 0000000000 0 2 000000000000 5 0 0 2 0 2 7777 0 7 0 0 7 0
consensus : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-T-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
gi|1 : ATCCAGCCTGC-ACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGCA-G-G-GAGGAA--GACCAAAATATGG-AGGAG---GCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TG-TATCAATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATTAGGTAG-CGAG--GGG-A----TCCTC---ATATCGCAATAA-TATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCC-AATCCCCCAAGTCTGGTAA----AAGCGCAA---G-TAGACGCTCTT-TTGACAATGGAGGACC------CAAAAATCCAGACTCGTGA-T-CG-AC-CTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCAT--TGA-GATATA-ACAATTAA--T---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTT-------AT-A---GG-CTGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGTGG-ATTTGCA--G-GAAGTGATGCATTGCC-ACAAAGGGGCAT-GTTG---GACAATT--GGATGCTGGAAT--ACA-GAGAGTTGTTCCGACCC-CCAA-TTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAA-CGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC------ACCT------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAA-CAAGTAGCTTCTAATG-TACG-AA-TAATCCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAA---GATA---GC-------GGCAA-AGACGATCATAAACCAACTATTCAGAC-CGTGAATGCGCAC-CAAAGATTTCTTG-CTTGTAT-AGCTC--GGTAGCAA--TGATAATGCAC-C-AATAA--ATAC----AAGAAATAGattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATT-------AAGG---GG-GTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGTGG-GATTGCA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-CACG-AATAACTGttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTTGG-GCTTACA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-AATG-AATAattatt
gi|14 : TGGATAGTGCGAATTAGC--GTACCTGCCAGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTG----------GTTTGTAATGTT-TG-AATTTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATT-------A--G---GGGCTGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGCGT-ATTTGTA--T-GAAGTCATGTATTGC
gi|19 : ACCTAGGC--A-ATGACGAG--GACCATACAATAG-TGGTG---GTAG--GAAACATA
gi|2 : ATCCATTCTACCCCTGATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC----------AATTGACCCGACCATGATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGATTG----TGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATTATA-AG-AGAGTCGGG-ATATTTCCTTTAGATATCGTAATAA-AGT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGCC---A-CCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACT-------G--A---G-----TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATT--CA--TTGAAAGCCTACATCG-A-ACGATGGAGCATAACTGTTGG-C-ATG--GGATGCCAGGATAAACGCAATAACTGTT---A-TG--TAA-CTGGTCAGTCATA-AATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAA---G-CA---GC-------GGCAA-AGACGATCTAAAC-CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAA--TGA-TATGCACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGA--GTGTGG-CTGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGTGT-ATTTGTAGAT-GATAG--TGCATTGCTTGCAAGGGGGAGG-G--G---G-C-ATGTTGGATGCCGGAAT-AA---AGT-GTTGTTCCGA-CG-ACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGC-AATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAGT-GCCCTTGGATAGTGCGAATTCGC--GTACCTGCAAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTG----------GTTTGTAATG-T-GGAAA-TAATCCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTA----GTCTT-TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATCCATTCTACCCCTGACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATGACGAG--GACCATACGATAG-AGGTG---GTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TG-CAGCAGGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATTAAGAAGTTGGG--AGG-A----TTTTC---GTACCGTAATAA-GGT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGTTGAAA-CCACCAAGTCTGGTTG----CCGCATAGGTTG-CT---GCTC-TCTTGACAATGGAGGATC------CAACAATCCAAACTCTTGC-TAC---CTCTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGTCA-CATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctTCTTATT-CATAGCCCTAACGTT-GCTAGAGA---------------TCTAGAC--G-G-AA-------ATCAAACTACTG-AGATG---GCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATG-CAGCAAACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTAATG--A-TGAG--AAA-A----TGATT---ATA--ACAAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCAatttgaaatatacatttaacgaa
gi|5 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttCTC-TGTTGACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGatagaaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aaGTTGTTTGAA-TGTCCAA-CTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTT-GCCTGAAGT-AA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTCACCTGTACT--CAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATAT-ATTGG--ATT-----ACTCCT-ATA-T--------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaggatgcatagccagaaagatacccgtCAAGTCTGGTAC----CCGCACAA---G-CA---GCGG----CAAAGACGACTAAAC------CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA---TGA-TATGCACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-GAGGAG--GACCATACTATTG-AGGAG---GCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATGA---------T-----CAACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATAT-TTAG--GGGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGATCA-AG-TCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-GAGGAA--GACCAAACTATGG-AGGAG---GCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 111 22222 1111 11 1111 111 2222222222 111 11 444444444444444444 1 22222 1111 1111111111 5555555 333333 1 222 1 11 111 11111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 111 1111111 44444444444444 1111 111 11 111111 222222222 1 1 1 1 222 111 1111 11 2222 444444444 7777777777 333333333333 1
lowQualScore : 1 33 2 8 8 33 1 99 3 222222 7 888 1 0 1 5 1 000 77 1 0 1 1 3 1 00000 8 1 1 1 1 1 8 1 7777 11 8 7777 444 6 3 3333333333 222 3 0 1 11 3 2 000000000000000000 1 0 44444 7777 8888888888 0000000 8 0 000000 1 2 5 0 555 5 8 1 5 11 777 99 44 0 22222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 111 5 555 333 1 1 0 8888888 55 4 99999999999999 8 1 1 1 1 2 6 0000 55 1 8 8 3 999 8 8 11 444444 0 333333333 0 1 4 0 33 1 0 1 44 2 7 2 3 333 333 0 7 1 0 6666 22 3 1 2222 0 1 555555555 3 0000000000 1 3 888888888888 6 1 1 3 0 1 7777 1 6 1 1 3 1
lowQualScore : . .. . . . .. . .. . ...... . ... . . . . . ... .. . . . . . . ..... . . . . . . . . .... .. . .... ... . . .......... ... . . . .. . . .................. . . ..... .... .......... ....... . . ...... . . . . ... . . . . .. ... .. .. . ........ ............................................................................................................... .... ... . ... ... . . . ....... .. . .............. . . . . . . . .... .. . . . . ... . . .. ...... . ......... . . . . .. . . . .. . . . . ... ... . . . . .... .. . . .... . . ......... . .......... . . ............ . . . . . . .... . . . . . .
lowQualScore : 0 55 5 0 8 66 0 22 3 999999 9 333 0 3 7 7 0 000 99 0 7 0 0 2 0 22222 0 0 0 0 4 4 0 0 8888 00 0 0000 000 4 8 8888888888 444 8 8 4 00 2 5 888888888888888888 2 0 55555 0000 6666666666 3333333 9 7 777777 0 0 7 1 666 7 7 4 5 00 000 00 00 8 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 000 7 000 777 3 0 6 6666666 77 0 44444444444444 0 0 7 7 0 2 7 8888 00 0 0 0 2 222 0 0 00 000000 8 222222222 0 0 2 2 88 0 0 0 22 5 3 0 3 777 777 7 3 0 2 5555 00 0 0 5555 2 0 000000000 2 8888888888 0 2 000000000000 5 0 0 2 0 2 7777 0 7 0 0 7 0
consensus : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
gi|1 : ATCCAGCCTGC-ACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGCA-G-G-GAGGAA--GACCAAAATATGG-AGGAG---GCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TG-TATCAATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATTAGGTAG-CGAG--GGG-A----TCCTC---ATATCGCAATAA-TATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCC-AATCCCCCAAGTCTGGTAA----AAGCGCAA---G-TAGACGCTCTT-TTGACAATGGAGGACC------CAAAAATCCAGACTCGTGA-T-CG-AC-CTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCAT--TGA-GATATA-ACAATTAA--T---AATAAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTT-------AT-A---GG-CTGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGTGG-ATTTGCA--G-GAAGTGATGCATTGCC-ACAAAGGGGCAT-GTTG---GACAATT--GGATGCTGGAAT--ACA-GAGAGTTGTTCCGACCC-CCAA-TTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAA-CGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC------ACCT------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAA-CAAGTAGCTTCTAATG-TACG-AA-TAATCCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAA---GATA---GC-------GGCAA-AGACGATCATAAACCAACTATTCAGAC-CGTGAATGCGCAC-CAAAGATTTCTTG-CTTGTAT-AGCTC--GGTAGCAA--TGATAATGCAC-C-AATAA--ATAC----AAGAAATAGattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATT-------AAGG---GG-GTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGTGG-GATTGCA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-CACG-AATAACTGttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTTGG-GCTTACA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-AATG-AATAattatt
gi|14 : TGGATAGTGCGAATTAGC--GTACCTGCCAGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTG----------GTTTGTAATGTT-TG-AATTTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATT-------A--G---GGGCTGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGCGT-ATTTGTA--T-GAAGTCATGTATTGC
gi|19 : ACCTAGGC--A-ATGACGAG--GACCATACAATAG-TGGTG---GTAG--GAAACATA
gi|2 : ATCCATTCTACCCCTGATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC----------AATTGACCCGACCATGATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGATTG----TGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATTATA-AG-AGAGTCGGG-ATATTTCCTTTAGATATCGTAATAA-AGT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGCC---A-CCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACT-------G--A---G-----TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATT--CA--TTGAAAGCCTACATCG-A-ACGATGGAGCATAACTGTTGG-C-ATG--GGATGCCAGGATAAACGCAATAACTGTT---A-TG--TAA-CTGGTCAGTCATA-AATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAA---G-CA---GC-------GGCAA-AGACGATCTAAAC-CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAA--TGA-TATGCACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGA--GTGTGG-CTGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGTGT-ATTTGTAGAT-GATAG--TGCATTGCTTGCAAGGGGGAGG-G--G---G-C-ATGTTGGATGCCGGAAT-AA---AGT-GTTGTTCCGA-CG-ACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGC-AATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAGT-GCCCTTGGATAGTGCGAATTCGC--GTACCTGCAAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTG----------GTTTGTAATG-T-GGAAA-TAATCCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTA----GTCTT-TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATCCATTCTACCCCTGACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATGACGAG--GACCATACGATAG-AGGTG---GTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TG-CAGCAGGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATTAAGAAGTTGGG--AGG-A----TTTTC---GTACCGTAATAA-GGT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGTTGAAA-CCACCAAGTCTGGTTG----CCGCATAGGTTG-CT---GCTC-TCTTGACAATGGAGGATC------CAACAATCCAAACTCTTGC-TAC---CTCTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGTCA-CATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctTCTTATT-CATAGCCCTAACGTT-GCTAGAGA---------------TCTAGAC--G-G-AA-------ATCAAACTACTG-AGATG---GCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATG-CAGCAAACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTAATG--A-TGAG--AAA-A----TGATT---ATA--ACAAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCAatttgaaatatacatttaacgaa
gi|5 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttCTC-TGTTGACGACGGAGGATC------CAACGATGCACACTCGTGA-TACG--C-CTTAAAATGCTTGGCTTGatagaaatatggtaacctctgttgacgacggaggatccaacgatgcacactcgtgatacgccttaaaatgcttggcttgct
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattcttttcttattcatagccctaacgttgctagagatctagacggaaatcaaactactgagatggcagggaacattgtgcagatgtttgacagtgtggtgataagaatctacatgcagcaaacattttgtacctgtatggtcagcattgtttgctcaatatagtaatgatgagaaaatgattataacaatttagagtttttgaacgaggtgttgtattttcattacgctatatcactgccatcaatagaaatatggtaacATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aaGTTGTTTGAA-TGTCCAA-CTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTT-GCCTGAAGT-AA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTCACCTGTACT--CAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATAT-ATTGG--ATT-----ACTCCT-ATA-T--------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaggatgcatagccagaaagatacccgtCAAGTCTGGTAC----CCGCACAA---G-CA---GCGG----CAAAGACGACTAAAC------CAACTATCCAGAC-CGTGA-TAC--AC-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA---TGA-TATGCACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-GAGGAG--GACCATACTATTG-AGGAG---GCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATGA---------T-----CAACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATAT-TTAG--GGGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGATCA-AG-TCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-GAGGAA--GACCAAACTATGG-AGGAG---GCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
blockSeqs : T CC T T T AT A AA C CAGG C ATT T A T T CAC TA A A T G T CTACA G G T T A T T T AAGT TC G TATT TAG T A GGTAATT GGC G A GT A C AGAAGTTGTC A T GAAA TAAA GTTGCT TCTCTT C ATAAAC G T A GCA T T T T GG AAG TA CA ATTGAAGC TAG TG G TAA GGC T A TTGCCC CA A GAGGGGGAGTGT G T A C T C G GAT CC A T A C TTG . . TT AAACGC TGAATGTC A G A TG G A A CA G A G . TCA CTG T T ACCT TG C T TTTT A GCCTGGTTT A ATT G A TTTGAATTTT G G G A . T GCAC T G C G C T
blockSeqs : T CC T . A G G . G AAT C G G G . T . . C A T A A G . G C T T T . A TAT . . . . C A TAGGCGA G A T . A C AAGCGTTATG G . AAG . GATA TCTGTT T TAAAC T T . G . A T T . A T TA TGACAA AC GG . CCT AC G G TTAGC AA G AAGG . C A T C C . TT CC A . . C TT . . . CACG CCGACGA . T A AG T . C GA G . . . . GCA . T GC TG A T TTTT T . A . G A TGGAAATAA A G G A . T . C . G C A A
blockSeqs : G CA G . T T G . G AAT G G T A . T . . T T A G A T . A A C G T . T AG . . . . C G AGTCGT T A T . . . GCGCT T . A . GCA GGC C . T T . A . T T . . A C CA TGACAA A GG . ATA AG T T TTGA CG A AG . G A T G T . T CA T . . C TT . . . AATG ATG . C T A T . T T G A GC . A G A A . . . C . T . C T A . C
blockSeqs : . . . G . C ATG G G A T . T . . C T G . . . . C G A G A . T A . . . . . . TTAG C . C . . GCA . C . A . . G . T T . . . T C ATAC C A . CAT AC T G CCGC TA G GA . G G T T A . T CC C . . . . . . . AA
blockSeqs : . . . GG . A T T . A . . A . . . G . . A . . T . C A . CAT A G T . CG A . . A T . T . T
blockSeqs : . . . A G . A . . . . T . . . . . . T . TA . T G . . .
blockSeqCons : AG** GCA******* C****** G** CA TGANAC** G** GAG*********** TT* AACG**
originalCons : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGTAG-TGAG--GGG-A----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAA---G-CA---GCTC-T-TCGACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG-AC-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACAACAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATT-------A--G---GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
finalCons : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATTATGAG--TGAG--GGG-A----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAAGCA-------GCC------GACGACGGAGGATC------CAACNATCCAGACTCGTGA-TACG--C-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAATGANAC--CAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAAG--CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATTGAG-----------GG-CTGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGATAACG--AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 333333 111 22222 11 22222 11 1111 111 2222222222 111 11 55555555555555555555555 222 222222 66666666666666666 11111 1 1 11 111 111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 222 111 1111111 44444444444 1111 111 11 111111 222222222 1 1 1 1 222 111 1111 11 2222 444444444 7777777777 333333333333 1
lowQualScore : 1 33 2 8 8 33 1 99 3 222222 7 888 1 0 1 5 1 000 77 1 0 1 1 3 1 00000 8 1 1 1 1 1 8 11 1 33333 11 7777 444 6 3 3333333333 222 3 0 1 11 33333333333333333333333 99 444 8 5 000000 88 77777777777777777 4 5 77 0 0 44444 1 2 5 0 5 5 7 1 5 11 777 99 44 0 555555555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222 111 5 555 333 1 1 0 8888888 55 4 00000000000 1 1 1 1 2 6 0000 55 1 8 8 3 999 8 8 11 444444 0 333333333 0 1 4 0 33 1 0 1 44 2 7 2 3 333 333 0 7 1 0 6666 22 3 1 2222 0 1 555555555 3 0000000000 1 3 888888888888 6 1 1 3 0 1 7777 1 6 1 1 3 1
lowQualScore : . .. . . . .. . .. . ...... . ... . . . . . ... .. . . . . . . ..... . . . . . . . .. . ..... .. .... ... . . .......... ... . . . .. ....................... .. ... . . ...... .. ................. . . .. . . ..... . . . . . . . . . .. ... .. .. . ......... ............................................................................................................... .... ... . ... ... . . . ....... .. . ........... . . . . . . .... .. . . . . ... . . .. ...... . ......... . . . . .. . . . .. . . . . ... ... . . . . .... .. . . .... . . ......... . .......... . . ............ . . . . . . .... . . . . . .
lowQualScore : 0 55 5 0 8 66 0 22 3 999999 9 333 0 3 7 7 0 000 99 0 7 0 0 2 0 22222 0 0 0 0 4 4 0 00 0 44444 00 0000 000 4 8 8888888888 444 8 8 4 00 44444444444444444444444 44 444 0 0 222222 88 77777777777777777 0 3 99 7 6 33333 0 0 7 1 7 7 1 4 5 00 000 00 00 8 888888888 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 000 7 000 777 3 0 6 6666666 77 0 00000000000 0 7 7 0 2 7 8888 00 0 0 0 2 222 0 0 00 000000 8 222222222 0 0 2 2 88 0 0 0 22 5 3 0 3 777 777 7 3 0 2 5555 00 0 0 5555 2 0 000000000 2 8888888888 0 2 000000000000 5 0 0 2 0 2 7777 0 7 0 0 7 0
consensus : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATT--ATG-AG--TGAG--GGGA----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATNG-A-G----CGT---T---TAAGC-TGAGGTC--AA-CCCCCAAGTCTGGTAC----CCGCACAAG-TAGC-G------C--------GACGACGG--AGGATC-----CAACNATCCAGACTCGTGA-TACG-C-CTAAAGATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGACANCAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATTAAGGG---------C-TGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
Reference ( family-3288 ) : ATCCANCCTGCCNCGGATCTTGTT-CATNGCCCTAACATT-TCTGGAAAA--GCNCCAGGAGAACCTAGGC--G-G-GAGGAG--GACCANACTATGG-AGGNG---GCGG--GGAACATAGNACGAACTTCTAACAATGTAGNAATNAGAATC----TG-CAGCAANCGCTCTGTNGNTGTCTGGTTCACATTGTTGGCTCCACAATGGA-TAATT--ATG-AG--TGAG--GGGA----TCCTC---ATACCGCAATAA-AGT-CGA--AGTTT--CGGGACAAGGTCCTGCAGCTTCATGCCGCCATATCCCTGC--CACCATATCG-A-G----CGT---T---TAAGC-TGAGGTCG-AA-CCCCCAAGTCTGGTAC----CCGCACAAG-CAGC--------C--------GACGACGG--AGGATC-----CAACNATCCAGACTCGTGA-TACG-C-CTAAAAATTCTTGGCTTGTATTAGCTC--GGTAGCAA--TGA-NATGCACACAAATAA--TGANACCAAAGAAATAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATAATTGGTG-C--TGTCAA-G-CCCAAG-ACNNTCAAAG-ACCTANTTAATGTT-GC--AACGAATTGATAGCGAATTGAGGG---------C-TGTCNCCCAAAATGAATAAACAAGGGGCCCNTTTTTGACGGGTGG-ATTTGCA--T-GAAAGCCTGCATNGCC-GCAAAGGGGCAT-GCTGTT-G-C-ATG--GGATGCCGGGAT-AACG-AATAGTTGTTCCGA-CG-CCAA-CTNGTCGGTCTTAGAACGNT-TGATNGTNAGTTGGAATTTTGGCCTGAAGC-AA-CGAATGTCATGGAACTNCGATATACTTCGAGTAGTGTTGCCCTTGGACAGNGCGAATTCGC--GTACCTGCAAGAATGCNTGAAATGCTAATGTATTTNAGGCAGCTGNGAATAGCCTGGTTTCATGTAATTTG--A-C-----GCTTNTAATG-T-CG-AA-TAATCCGTTGGAGGAGGTGTAAAGTAGTAGANANCCGCGAGTCCTTACGACT-GTGTGTCCTTAGCACGCCNTGTANGAGCTTTNTAATGATAAAGTGGTCCGTAGGATCNACGTTGTAAAATGTTTTAG
gi|1 : ATCCAGCCTGC-ACGAATTTTGTT-CATGGCTCTAACATT-TGTGGAAAA--GCTCCAGGAGAACCTGGGCA-G-G-GAGGAA--GACCAAAATATGG-AGGAG---GCGG--GGAACAGAGAACAAACCTCTAACAATGTAGCAATGAGGATC----TG-TATCAATCGCTCTGTGGATGTCTGACCCACATTATTGGCACCGCAGTGGA-TAATT--AGGTAG--CGAG--GGGA----TCCTC---ATATCGCAATAA-TATGCGA--AGTTT--TGGGACAAGGTCCTGCAACTTCATGCCGCCATATCCCTGC--CACCATATAG-ATG----CATTAGT---TAAGT-TCAGGTCC-AATCCCCCAAGTCTGGTAA----AAGCGCAAG-TAGA--------CGCTCTTTTGACAATGG--AGGACC-----CAAAAATCCAGACTCGTGA-T-CGAC-CTAAAAAGTCTTAGTTTGTGTTAGCCA--AGTAGCAT--TGA-GATATA-ACAATTAA--TAAT---AAAGAAGTAGATTAAACAACAAGGAATGTTAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATATTTGGTG-C--TGTCAATG-CCCAAG-ACTTTCAAAG-AGCGATTTAGTGTT-GC--AACAAACTGATAGCGAGTTATAGG---------C-TGCCCCCCAAAATGAATAAACAAGGGGTCTGTTCTTAATTGGTGG-ATTTGCA--G-GAAGTGATGCATTGCC-ACAAAGGGGCAT-GTTG---GACAATT--GGATGCTGGAAT--ACA-GAGAGTTGTTCCGACCC-CCAA-TTGGTCGGTGTTGGAACGGT-TGATGGTGAGTT-GAATTTTAGACTGAAGCAAA-CGAATGTCTTGGAACTA-AATATAGTTTGTGTGGTGTTACCCTTAGACAAGGTGAATTC------ACCT------ATGCGTGAAATGCTAATGTA---AAGGTTGCTGTGAATAGTTTGGTTTCATATATGCTGCAA-CAAGTAGCTTCTAATG-TACG-AA-TAATCCTTTGAAGGAGGTGTAAAGTAATAGGCGTTCGCGAGTCCTTGTG-CTGGTGTGACCTGAGCATGCCATGCAACAACTTTTTAATAATAAAGTGGTCTGTAGGATCCATGTTGTAAAATGCTTTAG
gi|10 : ACGACGG--AGGATC-----CAACGATGCACACTCGTGA-TACG-C-CTTAAAATGCTTGGCTTGCTTTACCT
gi|11 : CAAGTCTGGTACTAAACCGCACAAGATAGCGG------C--------AAAGACGATCATAAAC-----CAACTATTCAGAC-CGTGAATGCG-CACCAAAGATTTCTTGCTTGTAT-AGCTC--GGTAGCAA--TGATAATGCAC-C-AATAA----ATAC--AAGAAATAGattactatgtcatatgctctcacacgcaaaaaggtattaggtaaatctaacgaacgtatgtataaaacacgcgtgaacgtcattgccctgatgcttgaatgacatcattatacacgccatacataacaagggtagttgctgacactaatctaaataattgg
gi|12 : ggtgttatatGTCAA-A-CCCAAGGATAATCAAAC-ACGTGATCAATATT-GCCCAA--AATTGATAACGAATTAAGGG---------GGTGTCTCTCAAAATGAGCAAA---GGGCCCCTTTTTTGACGGGTGG-GATTGCA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-CACG-AATAACTGttgcgctaagttggtttaaaggaaattgtaacaaaataatggaaagtaaaa
gi|13 : CAAAATGAA----CAAAGGGCCCCTTTTTGCCGGTTGG-GCTTACA--T-GAAAGCCTACATAGCC-GCAGATGGGCAT-GCTGTT-G-C-ATG--GGATGCCAAGAT-AATG-AATAattatt
gi|14 : TGGATAGTGCGAATTAGC--GTACCTGCCAGAATGCTTGATATGCTAATGTATTTTAGGCAGTTGAAAATA---------CAAGTAATTTG----------GTTTGTAATGTT-TG-AATTTTTCCGTTGGAGGAAGTGTAAAGTAGTAGAGAGTCGCGAGTCCTTACGACT-GTGTGTCCacttattatttcaaaccggaaacgtatcaacgataataatatatatagttgtatgatagatag
gi|15 : GTTATATTTGGTG-A--TGTTAATG-TCCAAG-ACCTTCAAAG-ACCGAGTTAATGTT-GA--AACAAATTGATAGCGAATTAGGGG---------C-TGTCCTCCAAAATGAATAAACATGGGGCCTGTTTTTAATAGGCGT-ATTTGTA--T-GAAGTCATGTATTGC
gi|19 : ACCTAGGC--A-ATGACGAG--GACCATACAATAG-TGGTG---GTAG--GAAACATA
gi|2 : ATCCATTCTACCCCTGATCCTGTTTCAT-GCCCTGACATT--CTGAAAAAAAGCCCCCGAAGAACTTAGGC----------AATTGACCCGACCATGATAGATACACGCGGTAGGAACATAGAACGATTTTTTTAAAGAGTAGAAATTAGATTG----TGGCAGCCAGCACTCTGTTGTAGTTTGATTCACATTAGTGGCTCCACAATGGATTAATT--ATA-AG--AGAGTCGGGATATTTCCTTTAGATATCGTAATAA-AGT-CGT--AGTTTGGCGGG-CAA-ATCCTGC-GTTTCATGCCACAAGGT-CCTGCGTTATCAT-------G----CGC---T---TAAGCTTGGGGCC---A-CCCACAA
gi|2 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctGTTATCATTACTG-TAGTGTCAA-A-CCCAAG-GATAACAAAC-ACCTGTTTAATATTAGC--ACAAAATTGATA---AACTGAG---------------TCGCCCCAAACG--TGAACAAGGGCCCCTTTTTTGAAGGGTGGGATT--CA--TTGAAAGCCTACATCG-A-ACGATGGAGCATAACTGTTGG-C-ATG--GGATGCCAGGATAAACGCAATAACTGTT---A-TG--TAA-CTGGTCAGTCATA-AATGGTATGATAGTT-GTTGtgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggagttatcattactgtagtgtcaaacccaaggataacaaacacctgtttaatattagcacaaaattgataaactgagtcgccccaaacgtgaacaagggccccttttttgaagggtgggattcattgaaagcctacatcgaacgatggagcataactgttggcatgggatgccaggataaacgcaataactgttatgtaactggtcagtcataaatggtatgatagttgttgtatacgatggag
gi|3 : agaatcaaatagtggtcgttgatttgactaaactgaagatgtttaatgtgaaacggttacctctgcactgcaaaaactgagagccaccctatccattctacccctgatcctgtttcatgccctgacattctgaaaaaaagcccccgaagaacttaggcaattgacccgaccatgatagatacacgcggtaggaacatagaacgatttttttaaagagtagaaattagattgtggcagccagcactctgttgtagtttgattcacattagtggctccacaatggattaattataagagagtcgggatatttcctttagatatcgtaataaagtcgtagtttggcgggcaaatcctgcgtttcatgccacaaggtcctgcgttatcatgcgcttaagcttggggccacccacaatgggaaaatgttgagttaaaatggacccccatgtcatagttaacacaaattgctgctctcttgataatgaagtgcgacgattcgagacatttgcataaaacaccgttgattaatagcttggggtagcaatgaatcacagatataaaactgagttttaaagccaaacaagagacagtgtggacattcacatgtatatagcattggacacctttggggcatgcatgcctgctgcttgaatgacttactggaggactctcgtatagccaaagtaggtactgctctattctgaatgacatggaCAAGTCTGGTAC----CCGCACAAG-CAGC-----------------GGCAA-AG--ACGATCTAAACCAACTATCCAGAC-CGTGA-TACA-C-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCAA--TGA-TATGCACACAAATAA--TGACAACAAAGAAATAtatacgatggag
gi|3 : gttaTACAATTGGTG-C--AGTCAA-GGCCCAAT-ACATTCAAA---CCTAGTAGATG-------AACGAATTAATAACGAATTGAGGGGGAGTGTGGC-TGTCGCCCAAAATGGATAAACAAAGGGCTTATTTTTGATGGGTGT-ATTTGTAGAT-GATAG--TGCATTGCTTGCAAGGGGGAGG-G--G---G-C-ATGTTGGATGCCGGAAT-AA---AGT-GTTGTTCCGA-CG-ACAAATTTGACAATCTTTGAGCATG-TAATCGTCAGTTGAA--TTTGGCCTGAAGC-AATCAAATATCATTGAACTCTGATATGCTTCAAGTAGAGT-GCCCTTGGATAGTGCGAATTCGC--GTACCTGCAAGAATGCTTGGAATGCTAACGTATTTTAGGCAGTTTTGAATA---------CATGTAATTTG----------GTTTGTAATG-T-GGAAA-TAATCCAATGGAGGAGGTGTAAAGTAGTAGAGAGCTGCGAGTCCTTACGACT-GTGTGTCCTTA----GTCTT-TACGAGCTTTGTTATGATAGAGTGGCCCGTAGGGTCTACGTTGTGAAATGTTTTttgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgcagtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaattgagggggagtgtggctgtcgcccaaaatggataaacaaagggcttatttttgatgggtgtatttgtagatgatagtgcattgcttgcaagggggagggggcatgttggatgccggaataaagtgttgttccgacgacaaatttgacaatctttgagcatgtaatcgtcagttgaatttggcctgaagcaatcaaatatcattgaactctgatatgcttcaagtagagtgcccttggatagtgcgaattcgcgtacctgcaagaatgcttggaatgctaacgtattttaggcagttttgaatacatgtaatttggtttgtaatgtggaaataatccaatggaggaggtgtaaagtagtagagagctgcgagtccttacgactgtgtgtccttagtctttacgagctttgttatgatagagtggcccgtagggtctacgttgtgaaatgttttg
gi|4 : gttacaagtctggtacccgcacaagcagcggcaaagacgatctaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcaatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatataggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcATCCATTCTACCCCTGACCCTGTT-CATTGCCCTGATATTATCTG-AAAA--TCGCCACGAGAACCTAGGC--A-ATGACGAG--GACCATACGATAG-AGGTG---GTAG--GAAACATAGCCCGAATTTGTAATAAAGTCGAAATTAAAATT----TG-CAGCAGGCACTCGGTCGTCGTCTGTCTTACATTGTTGGCTCCACAATGGA-TAATT--AAG-AAGTTGGG--AGGA----TTTTC---GTACCGTAATAA-GGT--AATTAGTTT--GGGAGCAAGGTCCTGCAGCTTCATGCCGCTATAGCCTTGC--CACCAAATCG-A-GAAGTTGT---C---CAGGT-TGATGTTGAAA-CCACCAAGTCTGGTTG----CCGCATAGG-TTGCTGCTCTCTT--------GACAATGG--AGGATC-----CAACAATCCAAACTCTTGC-TACC-T-CTACAAA-TCTTGGTTTGAATTAGTTTGGGGTAGCAAAGTCA-CATGCATACAAATAAATTGAAGCCAAAAAAAg
gi|5 : ccccatcaaaatcaaatagtgacggtggttttgcacaaaattgaagatgtttaatacaatatccaccccgcactgccaaaaacctgatagcctccctTCTTATT-CATAGCCCTAACGTT-GCTAGAGA---------------TCTAGAC--G-G-AA-------ATCAAACTACTG-AGATG---GCAG--GGAACATTGTGCAGATGTTTGACAGTGTGGTGATAAGAATCTACATG-CAGCAAACATTTTGTACCTGTATGGTCAGCATTGTTTGCT---CAAT--A-TAGTA--ATG-A---TGAG--AAAA----TGATT---ATA--ACAAT-----T-TAG--AGTTT--TTGAACGAGGTGTTGTATTTTCATTACGCTATATCACTGC--CATCA-ATAG-A-----------------AA---TATGGT---AA-CC------TCTGTT------------------GA--------C--------GAC---GG--AGGATC-----CAACGATGCACACTCGTGA-TACG-C-CTTAAAATGCTTGGCTTGatttgaaatatacatttaacgaa
gi|6 : tcaaacgtaaattgttcacaagctgggtcaaatgtgtcccatcaggatcaatcaggtgtggtggtcttgggctaaactgtgggtgcttatgtaaagataacccttgactgacaatcttgagtttgattgattccctagctattctaattctttATAATTGGGGAC--TAT-AA-T-CTTAAG-A-TATCAAGGCACCGATTTAATGCC-GC--AATAAGTTGATAGct
gi|6 : aaGTTGTTTGAA-TGTCCAA-CTCGTCTGTTTTAGAACGTT-TGATTGTGAGTTGGAATTTT-GCCTGAAGT-AA---AATGGTATGGAACTGCAATGTACTTTGAACAGTGTTGCGTTTGTTCAGAAGAAATTCACCTGTACT--CAAGAATGCGTGAAACGTCAGTGTA---ACGGGAGCTGAAAATAGCCTGGTTTTATAT-ATTGG--ATT-----ACTCCT-ATA-T--------------TTAAAAGAGGTGTAAAGTTATGGACATCCGTGTATCTTTATGATC-GAGTGCTCTTTGCACACCCTGTAGGAGCTTTCTAATGAAAAAGGAATCATTAGGATCAACATTGTAAATTGTTGTAGgtaaaacaaaggatgcatagccagaaagatacccgtgttgtttgaatgtccaactcgtctgttttagaacgtttgattgtgagttggaattttgcctgaagtaaaatggtatggaactgcaatgtactttgaacagtgttgcgtttgttcagaagaaattcacctgtactcaagaatgcgtgaaacgtcagtgtaacgggagctgaaaatagcctggttttatatattggattactcctatatttaaaagaggtgtaaagttatggacatccgtgtatctttatgatcgagtgctctttgcacaccctgtaggagctttctaatgaaaaaggaatcattaggatcaacattgtaaattgttgtag
gi|7 : aaataattggggactataatcttaagatatcaaggcaccgatttaatgccgcaataagttgataggtaaaacaaaggatgcatagccagaaagatacccgtCAAGTCTGGTAC----CCGCACAAG-CAGCGG------C--------AAAGACGA--CTAAAC-----CAACTATCCAGAC-CGTGA-TACA-C-C-AAAGATTCTTGGCTTGTAT-AACTC--GGTAGCA---TGA-TATGCACACAAATAA--TGACAACAAAGAAATA
gi|7 : gttaTACAATTGGTG-C--CGTCAAGG-CCCAAT-ACATTCAA---ACCTAGTAGATG-------AACGAATTAATAACGAATttgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtctacaattggtgccgtcaaggcccaatacattcaaacctagtagatgaacgaattaataacgaat
gi|8 : gttacaagtctggtacccgcacaagcagcggcaaagacgactaaaccaactatccagaccgtgatacaccaaagattcttggcttgtataactcggtagcatgatatgcacacaaataatgacaacaaagaaatattgcttcgttggcttaagcaaattaacaaatattggagtaaaagacgcgtgagcatcatcaccctgctgcctgaatgacgtctttactaatgccttgcatggcaaggttgctgcccctagtcTAGAAAA--GTGCCAGGAGAACC-AGGCCAG-G-GAGGAG--GACCATACTATTG-AGGAG---GCAA--AGAAAATTGCACAAACTTCCAACAATGTATTAATGA---------T-----CAACTGCTCTGTGGATGTCTGGTTCACATTGTTGGCACAACAGTGGA-TGATTTTATA-TT--TAGG--GGGA----TCCTC---ATACCGCAATGATAGG-CGA--AGTTT--CGGGACAAGGTCCTGAAGCCTCGTGCCGTCATATCCCTGC--CACCATATCGAA-G----CGT---TATGTATGC-TGAGATCA-AG-TCCCC
gi|9 : tggATCCAGCCTGGCATGAATTTTGTT-CATTGCTCTATCATT-TCTGGAAAA--GCCCCAGGATAACCTGGGC--ATG-GAGGAA--GACCAAACTATGG-AGGAG---GCGG--GCAACAGAGAACAAACCTCTAACAATGTAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AATAGATGTGATGGCTTTGTGCTAAATTGGGGATGTTTGATGTAATGACCACCTCCTGCTGTCAGGAATTTAATTGCTTCCCTATC
Unaligned ( gi|17 ): GTCACATGCATACAAATAACTTGGAAGCCAAAAAAGGAAAATGACATATAAATTTAACGAAT
Unaligned ( gi|18 ): TCGTGGATTTGTACTAAACTGAGGATGTTTAATGGAACGGCCACCCTGCACT