lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111 11111111111111111111111111
lowQualScore : 1111 5555555555555 11111 1 22 111111 11 11 666666666 3 1 1 222 1 1 1 1 2222 11111 333333333333333333 1 1 33333 3333333 4 2222222 1 1 4444444444444444444 666666666666666 1 22 7777777 444 111 1111 1 11111 11 2 4444 1 1 333 1 33 222 5555 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 1 1 444444444444 333 4 1 1 1 444444444444 1 1 33 3 1 4 2 222 2 11 22222222222222222222222222 66666666 2222 2 777 1 33333 1 1
lowQualScore : 6 5 2222 2222222222222 77 5 5 00000 0 5 5 4 1 5 5 77 2 00 8 5 0 0 0 8 222222 44 3 33 111111111 3 7 1 7 3 3 7 333 3 6 6 0 0 6 6666 55555 222222222222222222 8 0 6 33333 8 7777777 0 6666666 6 1 6 6666666666666666666 000000000000000 3 999 6 66 9999999 555 111 5555 3 55555 88 6 7777 5 3 6 000 3 7 88 333 0000 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 2 5 5 7 111111111111 6 777 0 7 7 5 3 6 111111111111 3 6 6 88 1 3 6 0 7 3 6 333 3 4 99 22222222222222222222222222 6 66666666 3333 6 3 000 5 1 5 6 11111 0 0
lowQualScore : . . .... ............. .. . . ..... . . . . . . . .. . .. . . . . . . ...... .. . .. ......... . . . . . . . ... . . . . . . .... ..... .................. . . . ..... . ....... . ....... . . . ................... ............... . ... . .. ....... ... ... .... . ..... .. . .... . . . ... . . .. ... .... ........................................................................................................................................................................ . . . . . ............ . ... . . . . . . ............ . . . .. . . . . . . . ... . . .. .......................... . ........ .... . . ... . . . . ..... . .
lowQualScore : 7 7 1111 4444444444444 99 7 7 44444 7 7 7 3 4 7 7 99 1 88 0 0 6 8 8 0 666666 00 2 88 000000000 2 0 7 3 3 3 3 333 3 7 7 0 8 0 2222 00000 666666666666666666 0 6 0 44444 0 8888888 0 5555555 4 4 0 7777777777777777777 888888888888888 3 333 7 00 2222222 888 777 0000 3 00000 33 7 4444 5 3 7 000 3 3 33 666 7777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 5 5 3 000000000000 7 333 0 3 3 0 3 0 333333333333 3 0 7 77 7 3 7 0 3 7 7 333 7 0 33 77777777777777777777777777 7 00000000 7777 7 7 000 7 4 7 7 88888 0 5
consensus : AAGTGAGAT-ACGAAAA-GTC----TGCGC-----AA--GNGACA--TAAA-C-A--T--GTTCAATTGCCA-CATA-GTGGCCATGC-GCAAAGT-G-CA--TANTAANAAGA-CACAGACTCACGATATCTCAA-T--TT--GT-NAATAT--CAACCGA-TATAAGCAGTTCACGATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AGTTGGGTG--CGAC---G-AAAG--C--GCCG---AGAGG-GG-AAGACTATCGCCGGNTTTCACC-GCGATCGTTTGGTAAATGTACA-GCTTGCAGGAGTTTGGAAGTGACGACGCAAAAGCCGCTCG-CAG-AAA-GGGAAGACATA-T-CC--G--TGTCA-CCGCGACGG-TTGGTAAAT-TGTA--CAGCTTGC-A-AGGA---GTTTGGAGTG-CGAC---G-AAAG--CGCGCAGAAANGGGAAGACTATC-CCGG-TT--CA-CCGCGACGG-TTGGTAAATGTACAGCTTTGCAGG-AGTTTGGGTG--------ACGAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGGGTCACC-CCGCGGACG---TGGTAATATGTACAGCTNAGCAATAGGACAGG-TTCGGA-TNAAATCTGNGAAAATAA-TACTATAGGANNCAGTCAAATGTG--TC--TAG--TTTNGGGCAGGGAGGGTGGCGNGAATATTTTTTTGAC-AG-AAAAC--GTTCTCGTTCT---TACCAAATG-TCAATAAAATCTTGAAAA-AGGAAGTGA-TGAGA-------TTG-TAATT-TCCGGAG-TGTTTTG--ACAG-CCGGAAA-AATTCCG-TCATTAAA-TTTCAGGAGT---TGTTTT-GCCAANCTGGGA-CATTTCCAT---CA-T--GGTAAAA-CC---ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTAGANAAGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA---TCAGGACAAGGTAAATAGTT
Reference ( gi|1 ) : AAGTGAGAT-ACGAAAA-GTC----TGTGC-----A---GAG-CA--TAAA-C-A--T--GTTCAATTGCCA-CATA-GTGGCCATGC-GCAAAGT-G-CA--TATTAAATAGA-CACAGACTCACGATATCTCAA-T--CT--GT-TAATAT--CAAGCG--TAT-AGCAGTTCACAATTCAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTTGGGGT--CGAC---G-AAAG--C--GCCG---AGAGATGG-AAGACTATT-CCAGGGTTCACC-GCGAACGTTGGGTAAATGTACATGCTTGCAGGAG-TTGGAAGTGGCGACG-AAA----GC--G-CAG-AA---GGAAGAC-T--T-CC--G--TGTCA-CCGCGACGG-T-AGTAAAT-TGGAACCAGCTTGCCAAAGGA---GTTTGGAGTG-CGAC---G-AAAG--CGC-CAGACCCAGGAAGACTATC-CCGG-T---CA-CCGCGACGGGTTGGTAAATGTACAGCTTTGCAGG-G--TTGGGTGC-GCGAAAGCGACAGAGAAGCCTC----AAA--GGAAGAC-TCCCGGGTCATCGCTGCGAACGGTTTGGTAAGATGTACAGCTT-GCAATAGGACAGGGTTCGGAATCAATTC--GAAAGATAACTATTA-AGGA---AGT---ATATGGTTCGATAACTTTTTGG--AGGGAGGGTGG-GGAAATATTTTTTTGAA-AG-AAA-C--GTTCTCGTTCTCTTTACCAAATGCTCAATAAAATCTTGGAAACAGGAAGTGA-TAAGAGATAGTATTGGTAATT-TCCGGAGATGTTTTGTCACAGTCCGGAAA-AATTCCGCTCATTAAAATTTCAGGAGT---TGTTTTTGCCAAACTGGGG-CATTTCCATTCCCAGTA-GGTAAAATCC---AC-CGAATGACCCTTGGCATCAAATATTCGCGATATACT-GACAAGCTAATATAT-C-CTATTAT-C-A-AGATG-TCTGATAAA---T-AGGACAAGGTAAATTGTT
gi|3 : AAATGAGAT-ACAAAAA-GTC----TGTGC-----AAC-GAA-CA--TTTA-C-A--T---TTATATTG-CA-CATATATGGCCATGC-GCAAAGTCG-CAATTAATAAGTACA-CA-AGA-TTACAATATC-CAATT--TT--GT-AAATATAGCGATCA--TAA-AGCAGTTCACGATT-AAAGCCAAAGTGCGTTTG-AA---TTACT-AG-A-TCTT-CCATTGGCAGTTAAGTG--CGAC---GCAAAGCTC--ACAG---AAAGG-GG-AAGACTATTGCCGGTTTTCACC-GCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACG-AAAAGCCGC--G-CAG-AAATGGGAAGACAT--C-CC--G---GTCACCCGCGAC-G-T-GGTATAT-
gi|11 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcAAGTGAGAT-ACGAAAA-GTC----TGTGC-----AAT-GA--CA--TAAA-A-A--A--GTTCAATTGCCA-CATA-GTGGCCATGC-GCAAAGT-G--A--TATTAAA-AGA-CACAGACTCACGATATCTCAT-T--CT--G
gi|4 : aattcaaatcacaaatagtctcaAAATGAGATTACGAAAAAGTC----CGGGCGTACAA---GGA-CAGTTAAA-CCA--T--GTTCAATTGC-A-CATA-GTG-CCATGCCGCAAAGT-G-CA--AGATAAAAAGACCACATACTCACA--ATTTCAA-TGGCTAAGTGTAA-AT--TAA-CGA-TATAAGCAG-TCACAA
gi|13 : tatcaagatgatctgataaaatccaggacaagtaaataagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaAAGTGAGAT-ACGAAA--GCC----T-TCC-----AAACGAC-TA---AAA-C-AAAT--GTTCAATTGCC----TA-GTG-CCATGCCGCAAAGT-G-CA--TATTAA
gi|6 : aaatagttctctGACAT-ACGAAAA-GTC----TGCGC-----A---ACGACA--TAAA-C-A--T--GTTCAATTGCCA-CATA-GTGGCCATGC-GCAAAGT-G-CA--TATTAATAAGA-CACAGACTCCCGATATCTCAA-T--TT--GT-TAATAT--CAA-CGA-TATAAGCAGTTCACAATTAAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AATTGGGGTG-CGAC---G-AAAcaga
gi|5 : ttcatccaaagaggtcttgacaaattcaggacaagggtaagatgtcccgatgtttattattttgttgatggcgttactggccaggtgaattttgagcttaccgtagcaatatgggctgctcttcgcacaaaacaacaaaatcaacaaaatatgtgacggtccaatcaatatagactcattgtgcaatggtaggcgcaatgcacaaacgttcacaacaacatcaaatcgtcgattccaaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaaatcacaAT-ACGAAAA-GTC----TGCGC-----A---ACGACA--TAAAAC-A--TTAGTTCAATTGCCACCATA--TGGCCATGC-GCAAAGT-GTCA--TATTAATAAGA-CACA-ACTCCCGATATCTCAA-T--TT--GT-AATTAT--CAACTGATTA--AGCAGTTCAC-ATT--AAACC-AA-TG-GTTTGAAAATCTAAGTAAGCACTCTTACCACTGGAAATTGGGTG--CGACTGTG-AAAG--C--GCC
gi|12 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaGAAAA-GTCCGGCTGTGC-----A---AGGACA--TAAA-C-A--T--GTTCAATTGCAA-CATA-GTGGCCATGC-GCAAAGT-G-CA--TAATAAacttgcaa
gi|7 : CTT-GCA--GG-AGTTTGGGTGACAAC---G-AAAA-----GCCGCGCAGAAATGGGAAGAC-ATC-CCGG---TCACCCGCGA-CGT--GGTATATGTACA-GCTnnnnnnnnnnnnnnnnnnnnnnnnngaataattcaacattgcttaag
gi|2 : gttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaaGG-AGTTGGGTG--CTAC---G-AAAG--C--GCC----AGAAA-GG-AAGAC-ATT-CCGGG--TCACC-GCGATGGTT-GGTAAATGTACA-GCTTGCAaagcaataggcttcggataaaatctgaaaataatactataggacgcagtcaaatgtgtctagttgggcagggagggtggcgtgaatattttttgagcagcaaacatgttctcggttcttaaccaaatgtcaataatcttgaaaaaaggaagtgactgagatttaattatccggagttcttgcacaggccggaaataattcgtcattaaatttcagagttgatgtgtttgccaacctgggaccatgtccataccatatggtataacaggacaatacccgtggcaaagattcgatatactaagaaccatagactgcagctaatat
gi|7 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaggaagactatcccggttcaccgcgatggttggtaaatgtgcagctagca--CGAC---GCAAAG--CTCACAG---AAAGG-GG-AAGACTATTGCCGGTTTTCACC-GCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACG-AAAAGCCGC--G-CAG-AAATGGGAAGACAT--C-CC--G---GTCACCCGCGAC-G-T-GGTATAT-ataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|2 : gttaagtgGG-AAGACTATC-CC--GGTTCACC-GCGATGGTTGG-TAAATGTGCA-GCTAGCAGGAG-TTGG--GT-GCTACG-AAA----GC--GCCAGAAA---GGAAGACAT--T-CC--G--GGTCA-CCGCGATGGTT-GGTAAA--TGTA--CAGCTTGCAATAGGACAGGTTCGGAgtacagctaagcaataggcttcggataaaatctgaaaataatactataggacgcagtcaaatgtgtctagttgggcagggagggtggcgtgaatattttttgagcagcaaacatgttctcggttcttaaccaaatgtcaataatcttgaaaaaaggaagtgactgagatttaattatccggagttcttgcacaggccggaaataattcgtcattaaatttcagagttgatgtgtttgccaacctgggaccatgtccataccatatggtataacaggacaatacccgtggcaaagattcgatatactaagaaccatagactgcagctaatat
gi|3 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaAG-TT--AAGTG-CGACGCAAA----GCTCA-CAG-AAAGGGGAAGAC-TATTGCC--GGTTTTCA-CCGCG-CGG-TTGGTAAAT--GTA--CAACTTGC---AGGA---GTTTGG-GTGACAAC---G-AAAAGCCGCGCAGAAATGGGAAGAC-ATC-CCGG-T---CACCCGCGACG---TGGTATATtcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|7 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcAAGTG-CGACGCAAA----GCTCA-CAG-AAAGGGGAAGAC-TATTGCC--GGTTTTCA-CCGCG-CGG-TTGGTAAAT--GTA--CAACTTGC---AGGA---GTTTGG-GTGACAAC---G-AAAAGCCGCGCAGAAATGGGAAGAC-ATC-CCGG-T---CACCCGCGACG---TGGTATATGTACAGCT
gi|2 : gtt-AA---GGAAGAC-TA-T-CCCGG--T-TCA-CCGCGATGG-TTGGTAAATGTG----CAGCTAGC---AGGA---GTT--GGGTG-CTAC---G-AAAG--CGC-CAGAA--AGGAAGAC-ATT-CCGGGT---CA-CCGCGATGG-TTGGTAAATGTACAGC-TTGCAaagcaataggcttcggataaaatctgaaaataatactataggacgcagtcaaatgtgtctagttgggcagggagggtggcgtgaatattttttgagcagcaaacatgttctcggttcttaaccaaatgtcaataatcttgaaaaaaggaagtgactgagatttaattatccggagttcttgcacaggccggaaataattcgtcattaaatttcagagttgatgtgtttgccaacctgggaccatgtccataccatatggtataacaggacaatacccgtggcaaagattcgatatactaagaaccatagactgcagctaatat
gi|5 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaCTTACCACTGGA---AATTGG-GTG-CGACTGTG-AAAG--CGC-CAataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|3 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaatacgaaaagtctgcgcaacgacataaaacattagttcaattgccaccatatggccatgcgcaaagtgtcatattaataagacacaactcccgatatctcaatttgtaattatcaactgattaagcagttcacattaaaccaatggtttgaaaatctaagtaagcactA---GTT--AAGTG-CGAC---GCAAAG--CTCACAGAAAGGGGAAGACTATTGCCGG-TTTTCA-CCGCG-CGG-TTGGTAAATGTACAAC-TTGCAGG-AGTTTGGGTG--------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCC-GGTCAC--CCGCG-ACG---TGGTActtgcaa
gi|7 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcAGTG-CGAC---GCAAAG--CTCACAGAAAGGGGAAGACTATTGCCGG-TTTTCA-CCGCG-CGG-TTGGTAAATGTACAACTT-GCAGG-AGTTTGGGTG--------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGG-TCACC--CGCGA-CG---TGGTA-TATGTACAGCTAAGCAATAGG-C----TTCGGA-TAAAATC--TGAAAATAA-TACTATAGGACGCAGTCAAATGTG--TC--TAG----TTGGGCAGGGAGGGTGGCGTGAATA-TTTTTTGAGCAGCAAA-CATGTTCTCGGT-TCTTAACCAAATG-TCAAT--AATCTTGAAAAAAGGAAGTGACTGAG-------ATT--TAATTATCCGGAG-T-TCTTG-CACAGGCCGGAAATAATT-CG-TCATT-AAATTTCA-GAGTTGATGTGTTTGCCAACCTGGGACCATGTCCATACC--ATATGGTATAA--CAGGAC---AAT-ACCCGTGG---CAAAGATT--CGATATACT-AAGAAtat
gi|2 : gttaAGGAAGACTATC-CCGG-TT--CA-CCGCGATGG-TTGGTAAATGTGCAGCTA-GCAGGAG--TTGGGTGCTACGAAAGCGCCAGA-------------AA--GGAAGACATTCCGGGTCACCGC----GATGGTT-GGTAA-ATGTACAGCTT-GCAATAGGACAGG-TTCGGA-TCAAATCTGAAAAAATAA--ACTA-AAGAGC-AGT---AT--------------TTTGGG--AGGGAGGGTGG-GGAA-TATTTTTT-GAC-CG-AAAAT--TTTCTCGTTCT---TACCAAATG-TCAATAAAATCTTGAAAA--GGAAGTGC-TGAGA-------TTG-CAATT-TACGGAGTTGTTTAGT-ACAG-CCGGAAA-AAATCCG-TCATTAAA-TTTCAGGAGT---TGTTTT-GCCAAGCTGGGA-CATTTCCAT---CA-T--GGCAAAA-CC---ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATTTACTAGACAAGCTAATATATGCGCTATTAT-T-A-ccatagactgcagctaatat
gi|10 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaTTGAC-AG-AAAAC--GTTCTCGTTCT---TACCAAATG-TCAATAAAACCTTG--AACAGGAAGTGA-TGAGA-------TTG-TAATT-TCCAGAGATGTTCTG-AACAG-CCGGAAA-AATTCCG-TCATTAAA-TTTCAGGAGT---TGTTTT-GCCAAACTGGGA-CAATTCCAT---CA-T--GGTAAAA-CC---ACTCGAATGACCCTTGG-AT-AAA-ATTTGC-ATAAACTAGATAAGCTAATATATGCGCTATTATCC-A-AGATG-TCTGATAAA---TCAGGACAAGGTAAATAGTTtacactgttggg
gi|17 : TTAT-CCA-AGATG-TCTGATAAA---TCAGGA
gi|4 : TAT-C-A-AGATGATCTGATAAAATCC-AGGACAA-GTAAAT
gi|15 : TAT-CCA-AGATG-TCTAATAAA---TCAGGACAAGGTAAATAGTTaagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaaaatgagattacgaaaaagtccgggcgtacaaggacagttaaaccatgttcaattgcacatagtgccatgccgcaaagtgcaagataaaaagaccacatactcacaatttcaatggctaagtgtaaattaacgatataagcagtcacaa
gi|3 : T-C-ATAGATG-TCTGATAAA---T-CGGACAA-GTAAATTATTccg
gi|16 : at-C-A-AGATG-TCTGATAAA---TCAGGACAAGGTAAATAGTTccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcagttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaacttgcaggagtttgggtgacaacgaaaagccgcgcagaaatgggaagacatcccggtcacccgcgacgtggtatat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ATGTGTCAATTATCCCAAGAGTGATCATGAATAATAAACCACAATTTGATGATTCATGAATTATTACTTTAATGTGTGTTATTGCGCGGCGGTGAAGAGAATCTTGAACGCTACCAAAATGCATAGGGCCGCCTCGCACAAATATCAAACAAATGTACGGCCCATCAAGAGCTTATTAAGCAATGGGTATCGCAATGCACAAGCGCACGGAAATCACAAATCACAAAATGTGACCGGTCCATCAAAGGCTTTAAGCGCATTAGCGCAAATCGTCAAGAAAATAACAAATCACCAA
Unaligned ( gi|9 ): TATCAAAATTTCAATTCTACATATAGCGTTACTGGCCGCGGTGAGTAGGATACCAATGCAATAGGCTGCCTCATTACAAAACAACAACACAAAACAAGATATGACGATCCATAAATAGGCTCTTTGTGCAATGGATAAGAGCAAATGCACAATATTCTCAAAACATCAGATTTGCTCAATGGGTAAGCACAAATCGTTGGATATCCACCTCAACATATCAAACATCGTGCAACAAGTATGCAAAAATGCACTGACCTTACAAAACAACATTTCCAATGC
Unaligned ( gi|14 ): TGCATAGGACCGCCTCGCACAAAATCAAAAAAAGTGACGGTCCATCAAGAGGCTTATTTTGCAATGGGTTATCGCAAATGCACAAACG
Alignments
lowQualScore : 1111 22 11 1111111 2 2 1 1 2222 1 1 111 11 1 22 33 2 1 11 66666666666 333 444 1 2 44 6666 55 2 2 11 1 11 111 2 55555555 1 2 33 444444444444444 1 22 22 1 333 1 22 2 9999999999999999999999999 11 22 2 11 1 111 1 1 1 22 1 3333333 11 1 2222 3333 1 1 1 1 1 22222 1 3333 111 1 11 1 1111 1 11 1 11 1
lowQualScore : 5 5 0000 888888 44 66 5 11 66 6666 2 5 5 5 5 0 1 6 6 6 5 9999999 6 1 6 3 0 0 88 0 8 0 9 0 2 3 0 0 0000 0 2 2 8 6 8 8 444 8 33 0 3 11 44 11 3 3 0 5 88 88888888888 888 666 5 0 22 4 1111 55 0 2 3 77 3 7 88 666 3 6 7 55555555 3 3 6 3 00 7 6 222222222222222 7 5 44 7 00 3 1 222 3 00 3 0000000000000000000000000 33 11 3 1 9 9 33 0 777 0 0 3 0 55 0 2222222 22 0 3333 4444 0 0 0 2 0 0 2 88888 1 0 8888 111 0 33 5 2 4444 0 22 55 1 3 0 2 22 4 0 5 5 77 6 6
lowQualScore : . . .... ...... .. .. . .. .. .... . . . . . . . . . . . ....... . . . . . . .. . . . . . . . . . .... . . . . . . . ... . .. . . .. .. .. . . . . .. ........... ... ... . . .. . .... .. . . . .. . . .. ... . . . ........ . . . . .. . . ............... . . .. . .. . . ... . .. . ......................... .. .. . . . . .. . ... . . . . .. . ....... .. . .... .... . . . . . . . ..... . . .... ... . .. . . .... . .. .. . . . . .. . . . . .. . .
lowQualScore : 7 0 6666 000000 66 99 0 99 99 5555 5 0 0 0 0 4 0 6 7 7 2 3333333 7 0 0 2 0 8 88 8 0 8 6 0 5 2 0 0 8888 0 5 5 0 0 0 0 000 0 88 7 3 00 00 55 0 0 0 5 55 55555555555 000 555 5 0 55 0 0000 00 0 5 0 77 3 3 33 000 7 7 3 77777777 7 3 7 3 33 3 7 333333333333333 3 3 77 3 77 3 0 777 3 77 7 3333333333333333333333333 00 77 3 0 2 2 88 0 555 0 0 2 0 55 0 5555555 55 0 5555 8888 0 0 0 5 0 0 5 55555 0 0 8888 000 0 88 5 5 5555 0 55 88 0 2 0 5 55 4 0 0 7 99 7 7
consensus : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CAAGCGACA--TAAA-C--AT--GTTCAATTGC-CA-CATAGTGGCCATG-C-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACG-AAAAGCCG--CGCAGAAATGGGAAGACAT-CCCGTGTCACCCGCGACGG-TGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGAAA-GGGAAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGCTT-GCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCACC-CCGCGGACGGT-TGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCT--GAAA-ATAA-TACTA-AGGA--CAGT---ATGTG--TC--TAA--TTTTGGG-AGGGAGGGTGG-GGGAATATTTTTTTGACAGAAAAC--GTTCTC-GTTC---TT-ACCAAATG-TCAATAAAATCTTG-AAAA-AGGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGAT-GTTTTGT-A-CA-G-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG-T---TTTGCCAAACTGGGA-CATTTCCAT-CC-CA-T-GGTAAAA-C--CACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTAGACAAGCTAATATA-TGC-GCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
Reference ( family-3286 ) : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CAAGNGACA--TAAA-C--AT--GTTCAATTGC-CA-CATAGTGGCCATG-C-GCAAAGT-G-CATANTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTNAATATCAACCGAT-ATAA-GCAGTTCACGATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAGAGG-GGAAGACTATCGCCGGNTTTCACCGCGATCGTTTGGTAAATGTACA-GCTTGCAGGAGTTTGGAAGTGACGACGCAAAAGCCGCTCGCAGAAA-GGGAAGACATATCCGTGTCA-CCGCGACGGTTGGTAAATTGTA--CAGCTTGC--AAGGAGTTTGGAGTGCGACG-AAAGCGCGCAGAAANGGGAAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGCTTTGCAGGAGTTTGGGTG-------ACGAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGGGTCACC-CCGCGGACG---TGGTAATATGTACAGCTNAGCAATAGGACA-GGTTCGG-ATNAAATCTGNGAAA-ATAA-TACTATAGGANNCAGTCAAATGTG--TC--TAG--TTTNGGGCAGGGAGGGTGGCGNGAATATTTTTTTGACAGAAAAC--GTTCTC-GTTC---TT-ACCAAATG-TCAATAAAATCTTG-AAAA-AGGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAG-T-GTTTTG--A-CA-G-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG-T---TTTGCCAANCTGGGA-CATTTCCAT----CA-T-GGTAAAA-C--CACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTAGANAAGCTAATATA-TGC-GCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|1 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CA-GAG-CA--TAAA-C--AT--GTTCAATTGC-CA-CATAGTGGCCATG-C-GCAAAGT-G-CATATTAAATAG-A-CACAGACTCACGATATCTCAAT---C---T-GTTAATATCAAGCG-T-AT-A-GCAGTTCACAATTCAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-GTCGAC---G-AAAGC--GCCGAGAGATGGAAGACTATT-CCAGGGTTCACCGCGAACGTTGGGTAAATGTACATGCTTGCAGGAG-TTGGAAGTGGCGACG--AAAG-----CGCAGAA---GGAAGAC-T-TCCGTGTCA-CCGCGACGG-TAGTAAATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACG-AAAGCGC-CAGACCCAGGAAGACTATC-CCGG-T--CACCGCGACGGGTTGGTAAATGTACAGCTTTGCAGGG--TTGGGTGCGCGAAAGCGACAGAGAAGCCTC----AAA--GGAAGAC-TCCCGGGTCATCGCTGCGAACGGTTTGGTAAGATGTACAGCTT-GCAATAGGACAGGGTTCGGAATCAATTC---GAAAGATAACTATTA-AGGA---AGT---ATATGGTTCGATAACTTTTTGG--AGGGAGGGTGG-GGAAATATTTTTTTGAAAG-AAAC--GTTCTC-GTTCTCTTT-ACCAAATGCTCAATAAAATCTTG-GAAACAGGAAGTGA-TAAGAGATAGTATTGGTAATT-TCCGGAGAT-GTTTTGTCA-CA-GTCCGGAAA-AATTCCGCTCATTAAAATTTCAGGAGTTGTT---TTTGCCAAACTGGGG-CATTTCCATTCC-CAGTAGGTAAAATC--CAC-CGAATGACCCTTGGCATCAAATATTCGCGATATACT-GACAAGCTAATATA-T-C--CTATTAT-C-A-AGATG-TCTGATAAA--T-AGGACAAGGTAAAT-TGTT
gi|10 : TTGACAGAAAAC--GTTCTC-GTTC---TT-ACCAAATG-TCAATAAAACCTTG-AACA--GGAAGTGA-TGAG-------ATT-GTAATT-TCCAGAGAT-GTTCTG--AACA-G-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG-T---TTTGCCAAACTGGGA-CAATTCCAT----CA-T-GGTAAAA-C--CACTCGAATGACCCTTGG-AT-AAA-ATTTGC-ATAAACTAGATAAGCTAATATA-TGC-GCTATTATCC-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|11 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CAA-TGACA--TAAA-A--AA--GTTCAATTGC-CA-CATAGTGGCCATG-C-GCAAAGT-G--ATATTAA-AAG-A-CACAGACTCACGATATCTCATT---C---T-G
gi|12 : aattcaaatcacaaatagtctcaGAAAA-GTCCGGCTG--TG--CAAG-GACA--TAAA-C--AT--GTTCAATTGC-AA-CATAGTGGCCATG-C-GCAAAGT-G-CATAATAA
gi|13 : AAGTGAGAT-ACG-AAA-GCC----TT--C---CAAACGACT--AAAA-CAAAT--GTTCAATTGC-C----TAGT-GCCATGCC-GCAAAGT-G-CATATTAACAnnnnnnnnnnnnnnnnnnnnnnnnngaataattcaacattgcttaag
gi|15 : aaatagttctctTAT-CCA-AGATG-TCTAATAAA--TCAGGACAAGGTAAAT-AGTTga
gi|16 : -C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTTccg
gi|17 : TTAT-CCA-AGATG-TCTGATAAA--TCAGGA
gi|2 : -CCATTGG-AGTT-GGGGTGCGAC---G-AAAGC--GCCAAAAAG-GAA
gi|2 : GAAA--GGAAGACTATC-CCGGTT--CACCGCGAT-GGTTGGTAAATGTGCAGCTA-GCAGGAGTT-GGGTG--------CTAC-GAAAG--CGC-CAGAAA--GGAAGACATTCCGGGTCACC---GCG-ATGGT-TGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAAA-ATAA--ACTA-AAGAG-CAGT----------------A--TTTTGGG-AGGGAGGGTGG--GGAATATTTTTT-GACCGAAAAT--TTTCTC-GTTC---TT-ACCAAATG-TCAATAAAATCTTG-AAAA--GGAAGTGC-TGAG-------ATT-GCAATT-TACGGAG-TTGTTTAGT-A-CA-G-CCGGAAA-AAATCCG-TCATT-AAATTTCAGGAGTTG-T---TTTGCCAAGCTGGGA-CATTTCCAT----CA-T-GGCAAAA-C--CACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATTTACTAGACAAGCTAATATA-TGC-GCTATTAT-T-A-catnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaggaagactatcccggttcaccgcgatggttggtaaatgtgcagctagcaggagttgggtgctacgaaagcgccagaaaggaagacattccgggtcaccgcgatggttggtaaatgtacagcttgcaataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|3 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgT-C-ATAGATG-TCTGATAAA--TC-GGACAA-GTAAAT-tacactgttggg
gi|3 : atAAATGAGAT-ACAAAAA-GTC----TG--TG--CAACGAACA--TTTA-C--AT---TTATATTGCACA-TATA-TGGCCATG-C-GCAAAGTCG-CA-ATTAATAAGTA-CACAAGATTACAATATC-CAAT---T---TTGTAAATAT--AGCGATCATAAAGCAGTTCACGATT-AAAGCCAAAGTGCGTTTGAA----TTACT-AG-A-TCTT-CCATTGGCAGTT-AAG-TGCGAC---GCAAAGCTCACAGAAAGG-GGAAGACTATTGCCGGTTTTCACCGCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACG-AAAAGCCG--CGCAGAAATGGGAAGACAT-CCCG-GTCACCCGCGACG--TGGTATATtattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcagttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaacttgcaggagtttgggtgacaacgaaaagccgcgcagaaatgggaagacatcccggtcacccgcgacgtggtatat
gi|4 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcTAT-C-A-AGATGATCTGATAAAATCCAGGACAA-GTAAATAAGTT
gi|4 : AAATGAGATTACGAAAAAGTC----CGGGCGTACAAG-GACAGTTAAA-CC-AT--GTTCAATTGC--A-CATAGTG-CCATG-CCGCAAAGT-G-CAAGATAAAAAG-ACCACATACTCACA--ATTTCAATGGCTAAGT-GTAA--ATTAA-CGAT-ATAA-GCAG-TCACAAcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaaaatgagattacgaaaaagtccgggcgtacaaggacagttaaaccatgttcaattgcacatagtgccatgccgcaaagtgcaagataaaaagaccacatactcacaatttcaatggctaagtgtaaattaacgatataagcagtcacaa
gi|5 : tatcaagatgatctgataaaatccaggacaagtaaataagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaAT-ACGAAAA-GTC----TG--CG--CAA-CGACA--TAAAAC--ATTAGTTCAATTGC-CACCATA-TGGCCATG-C-GCAAAGT-GTCATATTAATAAG-A-CACA-ACTCCCGATATCTCAAT---T---T-GTAATTATCAACTGAT--TAA-GCAGTTCAC-ATT-AAA-CC-AA-TG-GTTTGAAAATCTAAGTAAGCACTCTTACCACTGGAAATT-GGG-TGCGACTGTG-AAAGC--GCC
gi|6 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaGACAT-ACGAAAA-GTC----TG--CG--CAA-CGACA--TAAA-C--AT--GTTCAATTGC-CA-CATAGTGGCCATG-C-GCAAAGT-G-CATATTAATAAG-A-CACAGACTCCCGATATCTCAAT---T---T-GTTAATATCAA-CGAT-ATAA-GCAGTTCACAATTAAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AATTGGGG-TGCGAC---G-AAAacttgcaa
gi|7 : ttcatccaaagaggtcttgacaaattcaggacaagggtaagatgtcccgatgtttattattttgttgatggcgttactggccaggtgaattttgagcttaccgtagcaatatgggctgctcttcgcacaaaacaacaaaatcaacaaaatatgtgacggtccaatcaatatagactcattgtgcaatggtaggcgcaatgcacaaacgttcacaacaacatcaaatcgtcgattccaaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaaatcacaAGTGCGACGCAAAGCTCACAGAAAGGGGAAGACTATTGCCGGTTTTCACCGCG-C-GGTTGGTAAATGTACAACTT-GCAGGAGTTTGGGTG-------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCC-GGTCA-C-CCGC-GACG---TGGT-ATATGTACAGCTAAGCAATAGG-C----TTCGG-ATAAAATCT--GAAA-ATAA-TACTATAGGACGCAGTCAAATGTG--TC--TAG--TT--GGGCAGGGAGGGTGGCGTGAATATTTTTTGAGCAGCAAACATGTTCTCGGTTC---TTAACCAAATG-TCAAT--AATCTTGAAAAA-AGGAAGTGACTGAG-------ATT--TAATTATCCGGAG-T--TCTTGC-A-CAGG-CCGGAAATAATT-CG-TCATT-AAATTTCA-GAGTTGATGTGTTTGCCAACCTGGGACCATGTCCATACCATA-T-GGTATAA-CAGGAC---AAT-ACCCGTGG-CA-AAG-ATTCG--ATATACTA-AGAACC--ATAGACTGCAGCTAATAT-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATGTGTCAATTATCCCAAGAGTGATCATGAATAATAAACCACAATTTGATGATTCATGAATTATTACTTTAATGTGTGTTATTGCGCGGCGGTGAAGAGAATCTTGAACGCTACCAAAATGCATAGGGCCGCCTCGCACAAATATCAAACAAATGTACGGCCCATCAAGAGCTTATTAAGCAATGGGTATCGCAATGCACAAGCGCACGGAAATCACAAATCACAAAATGTGACCGGTCCATCAAAGGCTTTAAGCGCATTAGCGCAAATCGTCAAGAAAATAACAAATCACCAA
Unaligned ( gi|9 ): TATCAAAATTTCAATTCTACATATAGCGTTACTGGCCGCGGTGAGTAGGATACCAATGCAATAGGCTGCCTCATTACAAAACAACAACACAAAACAAGATATGACGATCCATAAATAGGCTCTTTGTGCAATGGATAAGAGCAAATGCACAATATTCTCAAAACATCAGATTTGCTCAATGGGTAAGCACAAATCGTTGGATATCCACCTCAACATATCAAACATCGTGCAACAAGTATGCAAAAATGCACTGACCTTACAAAACAACATTTCCAATGC
Unaligned ( gi|14 ): TGCATAGGACCGCCTCGCACAAAATCAAAAAAAGTGACGGTCCATCAAGAGGCTTATTTTGCAATGGGTTATCGCAAATGCACAAACG
Alignments
lowQualScore : 1111 22 1 1111111 11 2 1 1 2222 1 1 111 11 1 1 11 1 1 11 2222 222 1 1 1 1 1 1 222222 1 1 11 111 1 55555555 1 22 11 444 2 22 1 1 22 1 11 22 1 7777777777777777777777777 1 22 11 1 111 1 1 333 1 3333333 11 1 11 2 1 1 1 22222 1 3333333333 1 11 1 1111 1 11 11 11 33333333 1
lowQualScore : 5 5 0000 888888 5 11 5 66 5 5 88888 6666 2 2 0 5 5 0 6 6 6 5 9999999 6 1 0 00 8 0 88 88 0 3 0 2 3 0 0 0000 0 2 2 8 6 8 8 444 8 33 3 5 22 88 1 1 5 5 88 3333 111 5 5 5 5 1 5 1 5 555555 3 3 7 88 666 3 6 7 55555555 3 3 6 00 88 7 6 000 8 00 3 3 7 00 3 88 00 3 4444444444444444444444444 7 3 55 9 9 33 0 777 0 0 3 555 0 2222222 22 0 9 2 11 0 0 2 0 0 2 88888 0 0 0000000000 0 33 5 2 4444 0 22 33 33 66666666 6 6 5 0 5 5 77 6 6
lowQualScore : . . .... ...... . .. . .. . . ..... .... . . . . . . . . . . ....... . . . .. . . .. .. . . . . . . . .... . . . . . . . ... . .. . . .. .. . . . . .. .... ... . . . . . . . . ...... . . . .. ... . . . ........ . . . .. .. . . ... . .. . . . .. . .. .. . ......................... . . .. . . .. . ... . . . ... . ....... .. . . . .. . . . . . . ..... . . .......... . .. . . .... . .. .. .. ........ . . . . . . .. . .
lowQualScore : 7 0 6666 000000 0 55 0 99 0 0 00000 5555 5 5 0 0 0 4 6 7 7 2 3333333 7 4 8 66 2 8 88 88 8 8 0 5 2 0 0 8888 0 5 5 0 0 0 0 000 0 88 3 0 00 55 0 0 5 5 55 0000 000 5 5 0 0 0 0 0 5 333333 3 3 3 33 000 3 7 3 33333333 7 3 7 00 33 3 7 333 7 00 3 3 3 77 3 33 77 3 3333333333333333333333333 3 3 33 2 2 88 0 555 0 0 2 555 0 5555555 55 0 8 5 22 0 0 5 0 0 5 55555 8 0 5555555555 0 88 5 5 5555 0 55 22 88 22222222 7 7 0 0 0 7 99 7 7
consensus : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCACC-C-GCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCA-T-CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
Reference ( family-3286 ) : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCACC-CCGCGGACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAA-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCA-TCCCA-T--GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|1 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CAGAGC----A--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAAATAG-A-CACAGACTCACGATATCTCAAT---C---T-GTTAATATCAAGCG-T-ATA--GCAGTTCACAATTCAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-GTCGAC---G-AAAGC--GCCGAGAGATGGAAGACTATT-CCAGGGTTCACCGCGAACGTTGGGTAAATGTACATGCTTGCAGGAG-TTGGAAGTGGCGACGAAA----GCGCAGAA---GGAAGAC-TTCCGTGTCA-CCGCGACGGTAGTAAATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACG-AAAGCGC-CAGACCCA--GG-AAGACTATC-CCGG-T--CACCGCGACGGGTTGGTAAATGTACAGCTTTGCAGGG--TTGGGTGCGCGAAAGCGACAGAGAAGCCTC----AAA--GGAAGAC-TCCCGGGTCATCGCTGCGAACGGTTTGGTAAGATGTACAGCTT-GCAATAGGACAGGGTTCGGAATCAATTCGAAAGA--TAACTATTA-AGGA----AGT---ATATGGTTCGATAACTTTTTGG-AGGGAGGGTGGGG-AAATATTTTTTTGAAAG-AAAC--GTTCTCG-TTCTCTTTA-CCAAATGCTCAATAAAATCTTGGAAACA-GGAAGTGA-TAAGAGATAGTATTGGTAATT-TCCGGAGATGTTTTGTCACAGTCCGGAAA-AATTCCGCTCATTAAAATTTCAGGAGTTGT--T-TTTGCCAAACTGGGGC-ATTTCCATTCCCAGTA-GGTAAAATCC--AC-CGAATGACCCTTGGCATCAAATATTCGCGATATACT--GA--CA--------AGCTAATATAT-C-CTATTAT-C-A-AGATG-TCTGATAAA--T-AGGACAAGGTAAAT-TGTT
gi|10 : TTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAACCTTGAACA---GGAAGTGA-TGAG-------ATT-GTAATT-TCCAGAGATGTTCTGA-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-AATTCCA-T--CA-T--GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTTGC-ATAAACTA-GA--TA--------AGCTAATATATGCGCTATTATCC-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|11 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CA-A-TGA-CA--TAAA-A-A--A--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G--ATATTAA-AAG-A-CACAGACTCACGATATCTCATT---C---T-G
gi|12 : aattcaaatcacaaatagtctcaGAAAA-GTCCGGCTG--TG--CA-AG-GA-CA--TAAA-C-A--T--GTTCAATTGC-AA-CATAGTGGCCATGC-GCAAAGT-G-CATAATAA
gi|13 : AAGTGAGAT-ACGAAA--GCC----TT--C---CA-AACGA-CT--AAAA-C-AAAT--GTTCAATTGC-C----TAGTG-CCATGCCGCAAAGT-G-CATATTAACAnnnnnnnnnnnnnnnnnnnnnnnnngaataattcaacattgcttaag
gi|15 : aaatagttctctTAT-CCA-AGATG-TCTAATAAA--TCAGGACAAGGTAAAT-AGTTga
gi|16 : -C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTTccg
gi|17 : TTAT-CCA-AGATG-TCTGATAAA--TCAGGA
gi|2 : -CCATTGG-AGTT-GGGGTGCGAC---G-AAAGC--GCCAAAAAG-GAA
gi|2 : GG---AAAGG-AAGACTATC-CCGGTT--CACCGCGAT-GGTTGGTAAATGTGCAGC-TAGCAGGAGTT-GGGTG--------CTAC-GAAAG--CGC-CAGAAA--GGAAGACATTCCGGGTCACC---GCG-ATGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAAAATAA--ACTA-AAGAGC--AGT---AT--------------TTTGGG-AGGGAGGGTGGGG--AATATTTTTT-GACCGAAAAT--TTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA---GGAAGTGC-TGAG-------ATT-GCAATT-TACGGAGTTGTTTAGT-ACAG-CCGGAAA-AAATCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAGCTGGGAC-ATTTCCA-T--CA-T--GGCAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATTTACTA-GA--CA--------AGCTAATATATGCGCTATTAT-T-A-catnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaggaagactatcccggttcaccgcgatggttggtaaatgtgcagctagcaggagttgggtgctacgaaagcgccagaaaggaagacattccgggtcaccgcgatggttggtaaatgtacagcttgcaataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|3 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatT-C-ATAGATG-TCTGATAAA--TC-GGACAA-GTAAAT-tacactgttggg
gi|3 : atAAATGAGAT-ACAAAAA-GTC----TG--TG--CA-A-CGAACA--TTTA-C-A--T---TTATATTGCACA-TATA-TGGCCATGC-GCAAAGTCG-CA-ATTAATAAGTA-CACAAGATTACAATATC-CAAT---T---TTGTAAATAT--AGCGATCATAAAGCAGTTCACGATT-AAAGCCAAAGTGCGTTTGAA----TTACT-AG-A-TCTT-CCATTGGCAGTT-AAG-TGCGAC---GCAAAGCTCACAGAAAGG-GGAAGACTATTGCCGGTTTTCACCGCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACGAAAAGCCGCGCAGAAATGGGAAGACATCCCG-GTCACCCGCGAC-GTGGTATATtattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcagttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaacttgcaggagtttgggtgacaacgaaaagccgcgcagaaatgggaagacatcccggtcacccgcgacgtggtatat
gi|4 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcTAT-C-A-AGATGATCTGATAAAATCCAGGACAA-GTAAATAAGTT
gi|4 : AAATGAGATTACGAAAAAGTC----CGGGCGTACA-AG-GA-CAGTTAAA-CCA--T--GTTCAATTGC--A-CATAGTG-CCATGCCGCAAAGT-G-CAAGATAAAAAG-ACCACATACTCACA--ATTTCAATGGCTAAGT-GTAAAT-T--AACGAT-ATAA-GCAG-TCACAAcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaaaatgagattacgaaaaagtccgggcgtacaaggacagttaaaccatgttcaattgcacatagtgccatgccgcaaagtgcaagataaaaagaccacatactcacaatttcaatggctaagtgtaaattaacgatataagcagtcacaa
gi|5 : tatcaagatgatctgataaaatccaggacaagtaaataagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaAT-ACGAAAA-GTC----TG--CG--CA-A-CGA-CA--TAAAAC-A--TTAGTTCAATTGC-CACCATA-TGGCCATGC-GCAAAGT-GTCATATTAATAAG-A-CACA-ACTCCCGATATCTCAAT---T---T-GTAATTATCAACTGAT--TAA-GCAGTTCAC-ATT-AAA-CC-AA-TG-GTTTGAAAATCTAAGTAAGCACTCTTACCACTGGAAATT-GGG-TGCGACTGTG-AAAGC--GCC
gi|6 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaGACAT-ACGAAAA-GTC----TG--CG--CA-A-CGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAATAAG-A-CACAGACTCCCGATATCTCAAT---T---T-GTTAATATCAA-CGAT-ATAA-GCAGTTCACAATTAAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AATTGGGG-TGCGAC---G-AAAacttgcaa
gi|7 : ttcatccaaagaggtcttgacaaattcaggacaagggtaagatgtcccgatgtttattattttgttgatggcgttactggccaggtgaattttgagcttaccgtagcaatatgggctgctcttcgcacaaaacaacaaaatcaacaaaatatgtgacggtccaatcaatatagactcattgtgcaatggtaggcgcaatgcacaaacgttcacaacaacatcaaatcgtcgattccaaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaaatcacaAGTGCGACGCAAAGCTCACAGA---AAGGGGAAGACTATTGCCGGTTTTCACCGCG-C-GGTTGGTAAATGTACAAC-TTGCAGGAGTTTGGGTG-------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGG-TCACC-C-GCG-ACG---TGGTAT-ATGTACAGCTAAGCAATAGG-C----TTCGG-ATAAAATCTGAAAA--TAA-TACTATAGGA-CGCAGTCAAATGTG--TC--TAG-TT--GGGCAGGGAGGGTGGCGTGAATATTTTTTGAGCAGCAAACATGTTCTCGGTTC---TTAACCAAATG-TCAATAA--TCTTGAAAA-AAGGAAGTGACTGAG-------ATT--TAATTATCCGGAG-T-TCTTGC-ACAGGCCGGAAATAATTC-G-TCATT-AAATTTCAG-AGTTGATGTGTTTGCCAACCTGGGACCATGTCCA-TACCA-TATGGTATAA-CAGGAC---AAT-ACCCGTGG-CA-AAG-ATTCG--ATATACTAAGAACCATAGACTGCAGCTAATAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATGTGTCAATTATCCCAAGAGTGATCATGAATAATAAACCACAATTTGATGATTCATGAATTATTACTTTAATGTGTGTTATTGCGCGGCGGTGAAGAGAATCTTGAACGCTACCAAAATGCATAGGGCCGCCTCGCACAAATATCAAACAAATGTACGGCCCATCAAGAGCTTATTAAGCAATGGGTATCGCAATGCACAAGCGCACGGAAATCACAAATCACAAAATGTGACCGGTCCATCAAAGGCTTTAAGCGCATTAGCGCAAATCGTCAAGAAAATAACAAATCACCAA
Unaligned ( gi|9 ): TATCAAAATTTCAATTCTACATATAGCGTTACTGGCCGCGGTGAGTAGGATACCAATGCAATAGGCTGCCTCATTACAAAACAACAACACAAAACAAGATATGACGATCCATAAATAGGCTCTTTGTGCAATGGATAAGAGCAAATGCACAATATTCTCAAAACATCAGATTTGCTCAATGGGTAAGCACAAATCGTTGGATATCCACCTCAACATATCAAACATCGTGCAACAAGTATGCAAAAATGCACTGACCTTACAAAACAACATTTCCAATGC
Unaligned ( gi|14 ): TGCATAGGACCGCCTCGCACAAAATCAAAAAAAGTGACGGTCCATCAAGAGGCTTATTTTGCAATGGGTTATCGCAAATGCACAAACG
Alignments
lowQualScore : 1111 22 1 1111111 11 2 1 1 2222 1 1 111 11 1 1 11 1 1 11 2222 222 1 1 1 1 1 1 222222 1 1 11 111 1 55555555 1 22 11 2222 1 22 1 1 22 1 11 22 1 7777777777777777777777777 1 22 11 1 111 1 1 333 1 3333333 11 1 11 2 1 1 1 22222 1 444444444 1 11 1 1111 1 11 11 11 33333333 1
lowQualScore : 5 5 0000 888888 5 11 5 66 5 5 88888 6666 2 2 0 5 5 0 6 6 6 5 9999999 6 1 0 00 8 0 88 88 0 3 0 2 3 0 0 0000 0 2 2 8 6 8 8 444 8 33 3 5 22 88 1 1 5 5 88 3333 111 5 5 5 5 1 5 1 5 555555 3 3 7 88 666 3 6 7 55555555 3 3 6 00 88 7 6 0000 3 00 3 3 7 00 3 88 00 3 4444444444444444444444444 7 3 55 9 9 33 0 777 0 0 3 555 0 2222222 22 0 9 2 11 0 0 2 0 0 2 88888 0 0 666666666 0 33 5 2 4444 0 22 33 33 66666666 6 6 5 0 5 5 77 6 6
lowQualScore : . . .... ...... . .. . .. . . ..... .... . . . . . . . . . . ....... . . . .. . . .. .. . . . . . . . .... . . . . . . . ... . .. . . .. .. . . . . .. .... ... . . . . . . . . ...... . . . .. ... . . . ........ . . . .. .. . . .... . .. . . . .. . .. .. . ......................... . . .. . . .. . ... . . . ... . ....... .. . . . .. . . . . . . ..... . . ......... . .. . . .... . .. .. .. ........ . . . . . . .. . .
lowQualScore : 7 0 6666 000000 0 55 0 99 0 0 00000 5555 5 5 0 0 0 4 6 7 7 2 3333333 7 4 8 66 2 8 88 88 8 8 0 5 2 0 0 8888 0 5 5 0 0 0 0 000 0 88 3 0 00 55 0 0 5 5 55 0000 000 5 5 0 0 0 0 0 5 333333 3 3 3 33 000 3 7 3 33333333 7 3 7 00 33 3 7 3333 3 00 3 3 3 77 3 33 77 3 0000000000000000000000000 3 3 33 2 2 88 0 555 0 0 2 555 0 5555555 55 0 8 5 22 0 0 5 0 0 5 55555 8 0 222222222 0 88 5 5 5555 0 55 22 88 22222222 7 7 0 0 0 7 99 7 7
consensus : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
Reference ( family-3286 ) : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|1 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CAGAGC----A--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAAATAG-A-CACAGACTCACGATATCTCAAT---C---T-GTTAATATCAAGCG-T-ATA--GCAGTTCACAATTCAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-GTCGAC---G-AAAGC--GCCGAGAGATGGAAGACTATT-CCAGGGTTCACCGCGAACGTTGGGTAAATGTACATGCTTGCAGGAG-TTGGAAGTGGCGACGAAA----GCGCAGAA---GGAAGAC-TTCCGTGTCA-CCGCGACGGTAGTAAATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACG-AAAGCGC-CAGACCCA--GG-AAGACTATC-CCGG-T--CACCGCGACGGGTTGGTAAATGTACAGCTTTGCAGGG--TTGGGTGCGCGAAAGCGACAGAGAAGCCTC----AAA--GGAAGAC-TCCCGGGTCATCGCTGCGAACGGTTTGGTAAGATGTACAGCTT-GCAATAGGACAGGGTTCGGAATCAATTCGAAAGA--TAACTATTA-AGGA----AGT---ATATGGTTCGATAACTTTTTGG-AGGGAGGGTGGGG-AAATATTTTTTTGAAAG-AAAC--GTTCTCG-TTCTCTTTA-CCAAATGCTCAATAAAATCTTGGAAACA-GGAAGTGA-TAAGAGATAGTATTGGTAATT-TCCGGAGATGTTTTGTCACAGTCCGGAAA-AATTCCGCTCATTAAAATTTCAGGAGTTGT--T-TTTGCCAAACTGGGGC-ATTTCCATTCCCAGTA-GGTAAAATCC--AC-CGAATGACCCTTGGCATCAAATATTCGCGATATACT--GA--CA--------AGCTAATATAT-C-CTATTAT-C-A-AGATG-TCTGATAAA--T-AGGACAAGGTAAAT-TGTT
gi|10 : TTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAACCTTGAACA---GGAAGTGA-TGAG-------ATT-GTAATT-TCCAGAGATGTTCTGA-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-AATTCCAT---CA-T--GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTTGC-ATAAACTA-GA--TA--------AGCTAATATATGCGCTATTATCC-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|11 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CA-A-TGA-CA--TAAA-A-A--A--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G--ATATTAA-AAG-A-CACAGACTCACGATATCTCATT---C---T-G
gi|12 : aattcaaatcacaaatagtctcaGAAAA-GTCCGGCTG--TG--CA-AG-GA-CA--TAAA-C-A--T--GTTCAATTGC-AA-CATAGTGGCCATGC-GCAAAGT-G-CATAATAA
gi|13 : AAGTGAGAT-ACGAAA--GCC----TT--C---CA-AACGA-CT--AAAA-C-AAAT--GTTCAATTGC-C----TAGTG-CCATGCCGCAAAGT-G-CATATTAACAnnnnnnnnnnnnnnnnnnnnnnnnngaataattcaacattgcttaag
gi|15 : aaatagttctctTAT-CCA-AGATG-TCTAATAAA--TCAGGACAAGGTAAAT-AGTTga
gi|16 : -C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTTccg
gi|17 : TTAT-CCA-AGATG-TCTGATAAA--TCAGGA
gi|2 : -CCATTGG-AGTT-GGGGTGCGAC---G-AAAGC--GCCAAAAAG-GAA
gi|2 : GG---AAAGG-AAGACTATC-CCGGTT--CACCGCGAT-GGTTGGTAAATGTGCAGC-TAGCAGGAGTT-GGGTG--------CTAC-GAAAG--CGC-CAGAAA--GGAAGACATTCCGGGTCAC--C-GCG-ATGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAAAATAA--ACTA-AAGAGC--AGT---AT--------------TTTGGG-AGGGAGGGTGGGG--AATATTTTTT-GACCGAAAAT--TTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA---GGAAGTGC-TGAG-------ATT-GCAATT-TACGGAGTTGTTTAGT-ACAG-CCGGAAA-AAATCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAGCTGGGAC-ATTTCCAT---CA-T--GGCAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATTTACTA-GA--CA--------AGCTAATATATGCGCTATTAT-T-A-catnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaggaagactatcccggttcaccgcgatggttggtaaatgtgcagctagcaggagttgggtgctacgaaagcgccagaaaggaagacattccgggtcaccgcgatggttggtaaatgtacagcttgcaataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|3 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatT-C-ATAGATG-TCTGATAAA--TC-GGACAA-GTAAAT-tacactgttggg
gi|3 : atAAATGAGAT-ACAAAAA-GTC----TG--TG--CA-A-CGAACA--TTTA-C-A--T---TTATATTGCACA-TATA-TGGCCATGC-GCAAAGTCG-CA-ATTAATAAGTA-CACAAGATTACAATATC-CAAT---T---TTGTAAATAT--AGCGATCATAAAGCAGTTCACGATT-AAAGCCAAAGTGCGTTTGAA----TTACT-AG-A-TCTT-CCATTGGCAGTT-AAG-TGCGAC---GCAAAGCTCACAGAAAGG-GGAAGACTATTGCCGGTTTTCACCGCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACGAAAAGCCGCGCAGAAATGGGAAGACATCCCG-GTCACCCGCGAC-GTGGTATATtattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcagttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaacttgcaggagtttgggtgacaacgaaaagccgcgcagaaatgggaagacatcccggtcacccgcgacgtggtatat
gi|4 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcTAT-C-A-AGATGATCTGATAAAATCCAGGACAA-GTAAATAAGTT
gi|4 : AAATGAGATTACGAAAAAGTC----CGGGCGTACA-AG-GA-CAGTTAAA-CCA--T--GTTCAATTGC--A-CATAGTG-CCATGCCGCAAAGT-G-CAAGATAAAAAG-ACCACATACTCACA--ATTTCAATGGCTAAGT-GTAAAT-T--AACGAT-ATAA-GCAG-TCACAAcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaaaatgagattacgaaaaagtccgggcgtacaaggacagttaaaccatgttcaattgcacatagtgccatgccgcaaagtgcaagataaaaagaccacatactcacaatttcaatggctaagtgtaaattaacgatataagcagtcacaa
gi|5 : tatcaagatgatctgataaaatccaggacaagtaaataagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaAT-ACGAAAA-GTC----TG--CG--CA-A-CGA-CA--TAAAAC-A--TTAGTTCAATTGC-CACCATA-TGGCCATGC-GCAAAGT-GTCATATTAATAAG-A-CACA-ACTCCCGATATCTCAAT---T---T-GTAATTATCAACTGAT--TAA-GCAGTTCAC-ATT-AAA-CC-AA-TG-GTTTGAAAATCTAAGTAAGCACTCTTACCACTGGAAATT-GGG-TGCGACTGTG-AAAGC--GCC
gi|6 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaGACAT-ACGAAAA-GTC----TG--CG--CA-A-CGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAATAAG-A-CACAGACTCCCGATATCTCAAT---T---T-GTTAATATCAA-CGAT-ATAA-GCAGTTCACAATTAAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AATTGGGG-TGCGAC---G-AAAacttgcaa
gi|7 : ttcatccaaagaggtcttgacaaattcaggacaagggtaagatgtcccgatgtttattattttgttgatggcgttactggccaggtgaattttgagcttaccgtagcaatatgggctgctcttcgcacaaaacaacaaaatcaacaaaatatgtgacggtccaatcaatatagactcattgtgcaatggtaggcgcaatgcacaaacgttcacaacaacatcaaatcgtcgattccaaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaaatcacaAGTGCGACGCAAAGCTCACAGA---AAGGGGAAGACTATTGCCGGTTTTCACCGCG-C-GGTTGGTAAATGTACAAC-TTGCAGGAGTTTGGGTG-------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGG-TCAC--CCGCG-ACG---TGGTAT-ATGTACAGCTAAGCAATAGG-C----TTCGG-ATAAAATCTGAAAA--TAA-TACTATAGGA-CGCAGTCAAATGTG--TC--TAG-TT--GGGCAGGGAGGGTGGCGTGAATATTTTTTGAGCAGCAAACATGTTCTCGGTTC---TTAACCAAATG-TCAATAA--TCTTGAAAA-AAGGAAGTGACTGAG-------ATT--TAATTATCCGGAG-T-TCTTGC-ACAGGCCGGAAATAATTC-G-TCATT-AAATTTCAG-AGTTGATGTGTTTGCCAACCTGGGACCATGTCCATA-CCA-TATGGTATAA-CAGGAC---AAT-ACCCGTGG-CA-AAG-ATTCG--ATATACTAAGAACCATAGACTGCAGCTAATAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATGTGTCAATTATCCCAAGAGTGATCATGAATAATAAACCACAATTTGATGATTCATGAATTATTACTTTAATGTGTGTTATTGCGCGGCGGTGAAGAGAATCTTGAACGCTACCAAAATGCATAGGGCCGCCTCGCACAAATATCAAACAAATGTACGGCCCATCAAGAGCTTATTAAGCAATGGGTATCGCAATGCACAAGCGCACGGAAATCACAAATCACAAAATGTGACCGGTCCATCAAAGGCTTTAAGCGCATTAGCGCAAATCGTCAAGAAAATAACAAATCACCAA
Unaligned ( gi|9 ): TATCAAAATTTCAATTCTACATATAGCGTTACTGGCCGCGGTGAGTAGGATACCAATGCAATAGGCTGCCTCATTACAAAACAACAACACAAAACAAGATATGACGATCCATAAATAGGCTCTTTGTGCAATGGATAAGAGCAAATGCACAATATTCTCAAAACATCAGATTTGCTCAATGGGTAAGCACAAATCGTTGGATATCCACCTCAACATATCAAACATCGTGCAACAAGTATGCAAAAATGCACTGACCTTACAAAACAACATTTCCAATGC
Unaligned ( gi|14 ): TGCATAGGACCGCCTCGCACAAAATCAAAAAAAGTGACGGTCCATCAAGAGGCTTATTTTGCAATGGGTTATCGCAAATGCACAAACG
Alignments
lowQualScore : 1111 22 1 1111111 11 2 1 1 2222 1 1 111 11 1 1 11 1 1 11 2222 222 1 1 1 1 1 1 222222 1 1 11 111 1 55555555 1 22 11 2222 1 22 1 1 22 1 11 22 1 7777777777777777777777777 1 22 11 1 111 1 1 333 1 3333333 11 1 11 2 1 1 1 22222 1 444444444 1 11 1 1111 1 11 11 11 33333333 1
lowQualScore : 5 5 0000 888888 5 11 5 66 5 5 88888 6666 2 2 0 5 5 0 6 6 6 5 9999999 6 1 0 00 8 0 88 88 0 3 0 2 3 0 0 0000 0 2 2 8 6 8 8 444 8 33 3 5 22 88 1 1 5 5 88 3333 111 5 5 5 5 1 5 1 5 555555 3 3 7 88 666 3 6 7 55555555 3 3 6 00 88 7 6 0000 3 00 3 3 7 00 3 88 00 3 4444444444444444444444444 7 3 55 9 9 33 0 777 0 0 3 555 0 2222222 22 0 9 2 11 0 0 2 0 0 2 88888 0 0 666666666 0 33 5 2 4444 0 22 33 33 66666666 6 6 5 0 5 5 77 6 6
lowQualScore : . . .... ...... . .. . .. . . ..... .... . . . . . . . . . . ....... . . . .. . . .. .. . . . . . . . .... . . . . . . . ... . .. . . .. .. . . . . .. .... ... . . . . . . . . ...... . . . .. ... . . . ........ . . . .. .. . . .... . .. . . . .. . .. .. . ......................... . . .. . . .. . ... . . . ... . ....... .. . . . .. . . . . . . ..... . . ......... . .. . . .... . .. .. .. ........ . . . . . . .. . .
lowQualScore : 7 0 6666 000000 0 55 0 99 0 0 00000 5555 5 5 0 0 0 4 6 7 7 2 3333333 7 4 8 66 2 8 88 88 8 8 0 5 2 0 0 8888 0 5 5 0 0 0 0 000 0 88 3 0 00 55 0 0 5 5 55 0000 000 5 5 0 0 0 0 0 5 333333 3 3 3 33 000 3 7 3 33333333 7 3 7 00 33 3 7 3333 3 00 3 3 3 77 3 33 77 3 0000000000000000000000000 3 3 33 2 2 88 0 555 0 0 2 555 0 5555555 55 0 8 5 22 0 0 5 0 0 5 55555 8 0 222222222 0 88 5 5 5555 0 55 22 88 22222222 7 7 0 0 0 7 99 7 7
consensus : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
Reference ( family-3286 ) : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|1 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CAGAGC----A--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAAATAG-A-CACAGACTCACGATATCTCAAT---C---T-GTTAATATCAAGCG-T-ATA--GCAGTTCACAATTCAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-GTCGAC---G-AAAGC--GCCGAGAGATGGAAGACTATT-CCAGGGTTCACCGCGAACGTTGGGTAAATGTACATGCTTGCAGGAG-TTGGAAGTGGCGACGAAA----GCGCAGAA---GGAAGAC-TTCCGTGTCA-CCGCGACGGTAGTAAATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACG-AAAGCGC-CAGACCCA--GG-AAGACTATC-CCGG-T--CACCGCGACGGGTTGGTAAATGTACAGCTTTGCAGGG--TTGGGTGCGCGAAAGCGACAGAGAAGCCTC----AAA--GGAAGAC-TCCCGGGTCATCGCTGCGAACGGTTTGGTAAGATGTACAGCTT-GCAATAGGACAGGGTTCGGAATCAATTCGAAAGA--TAACTATTA-AGGA----AGT---ATATGGTTCGATAACTTTTTGG-AGGGAGGGTGGGG-AAATATTTTTTTGAAAG-AAAC--GTTCTCG-TTCTCTTTA-CCAAATGCTCAATAAAATCTTGGAAACA-GGAAGTGA-TAAGAGATAGTATTGGTAATT-TCCGGAGATGTTTTGTCACAGTCCGGAAA-AATTCCGCTCATTAAAATTTCAGGAGTTGT--T-TTTGCCAAACTGGGGC-ATTTCCATTCCCAGTA-GGTAAAATCC--AC-CGAATGACCCTTGGCATCAAATATTCGCGATATACT--GA--CA--------AGCTAATATAT-C-CTATTAT-C-A-AGATG-TCTGATAAA--T-AGGACAAGGTAAAT-TGTT
gi|10 : TTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAACCTTGAACA---GGAAGTGA-TGAG-------ATT-GTAATT-TCCAGAGATGTTCTGA-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-AATTCCAT---CA-T--GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTTGC-ATAAACTA-GA--TA--------AGCTAATATATGCGCTATTATCC-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|11 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CA-A-TGA-CA--TAAA-A-A--A--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G--ATATTAA-AAG-A-CACAGACTCACGATATCTCATT---C---T-G
gi|12 : aattcaaatcacaaatagtctcaGAAAA-GTCCGGCTG--TG--CA-AG-GA-CA--TAAA-C-A--T--GTTCAATTGC-AA-CATAGTGGCCATGC-GCAAAGT-G-CATAATAA
gi|13 : AAGTGAGAT-ACGAAA--GCC----TT--C---CA-AACGA-CT--AAAA-C-AAAT--GTTCAATTGC-C----TAGTG-CCATGCCGCAAAGT-G-CATATTAACAnnnnnnnnnnnnnnnnnnnnnnnnngaataattcaacattgcttaag
gi|15 : aaatagttctctTAT-CCA-AGATG-TCTAATAAA--TCAGGACAAGGTAAAT-AGTTga
gi|16 : -C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTTccg
gi|17 : TTAT-CCA-AGATG-TCTGATAAA--TCAGGA
gi|2 : -CCATTGG-AGTT-GGGGTGCGAC---G-AAAGC--GCCAAAAAG-GAA
gi|2 : GG---AAAGG-AAGACTATC-CCGGTT--CACCGCGAT-GGTTGGTAAATGTGCAGC-TAGCAGGAGTT-GGGTG--------CTAC-GAAAG--CGC-CAGAAA--GGAAGACATTCCGGGTCAC--C-GCG-ATGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAAAATAA--ACTA-AAGAGC--AGT---AT--------------TTTGGG-AGGGAGGGTGGGG--AATATTTTTT-GACCGAAAAT--TTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA---GGAAGTGC-TGAG-------ATT-GCAATT-TACGGAGTTGTTTAGT-ACAG-CCGGAAA-AAATCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAGCTGGGAC-ATTTCCAT---CA-T--GGCAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATTTACTA-GA--CA--------AGCTAATATATGCGCTATTAT-T-A-catnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaggaagactatcccggttcaccgcgatggttggtaaatgtgcagctagcaggagttgggtgctacgaaagcgccagaaaggaagacattccgggtcaccgcgatggttggtaaatgtacagcttgcaataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|3 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatT-C-ATAGATG-TCTGATAAA--TC-GGACAA-GTAAAT-tacactgttggg
gi|3 : atAAATGAGAT-ACAAAAA-GTC----TG--TG--CA-A-CGAACA--TTTA-C-A--T---TTATATTGCACA-TATA-TGGCCATGC-GCAAAGTCG-CA-ATTAATAAGTA-CACAAGATTACAATATC-CAAT---T---TTGTAAATAT--AGCGATCATAAAGCAGTTCACGATT-AAAGCCAAAGTGCGTTTGAA----TTACT-AG-A-TCTT-CCATTGGCAGTT-AAG-TGCGAC---GCAAAGCTCACAGAAAGG-GGAAGACTATTGCCGGTTTTCACCGCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACGAAAAGCCGCGCAGAAATGGGAAGACATCCCG-GTCACCCGCGAC-GTGGTATATtattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcagttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaacttgcaggagtttgggtgacaacgaaaagccgcgcagaaatgggaagacatcccggtcacccgcgacgtggtatat
gi|4 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcTAT-C-A-AGATGATCTGATAAAATCCAGGACAA-GTAAATAAGTT
gi|4 : AAATGAGATTACGAAAAAGTC----CGGGCGTACA-AG-GA-CAGTTAAA-CCA--T--GTTCAATTGC--A-CATAGTG-CCATGCCGCAAAGT-G-CAAGATAAAAAG-ACCACATACTCACA--ATTTCAATGGCTAAGT-GTAAAT-T--AACGAT-ATAA-GCAG-TCACAAcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaaaatgagattacgaaaaagtccgggcgtacaaggacagttaaaccatgttcaattgcacatagtgccatgccgcaaagtgcaagataaaaagaccacatactcacaatttcaatggctaagtgtaaattaacgatataagcagtcacaa
gi|5 : tatcaagatgatctgataaaatccaggacaagtaaataagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaAT-ACGAAAA-GTC----TG--CG--CA-A-CGA-CA--TAAAAC-A--TTAGTTCAATTGC-CACCATA-TGGCCATGC-GCAAAGT-GTCATATTAATAAG-A-CACA-ACTCCCGATATCTCAAT---T---T-GTAATTATCAACTGAT--TAA-GCAGTTCAC-ATT-AAA-CC-AA-TG-GTTTGAAAATCTAAGTAAGCACTCTTACCACTGGAAATT-GGG-TGCGACTGTG-AAAGC--GCC
gi|6 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaGACAT-ACGAAAA-GTC----TG--CG--CA-A-CGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAATAAG-A-CACAGACTCCCGATATCTCAAT---T---T-GTTAATATCAA-CGAT-ATAA-GCAGTTCACAATTAAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AATTGGGG-TGCGAC---G-AAAacttgcaa
gi|7 : ttcatccaaagaggtcttgacaaattcaggacaagggtaagatgtcccgatgtttattattttgttgatggcgttactggccaggtgaattttgagcttaccgtagcaatatgggctgctcttcgcacaaaacaacaaaatcaacaaaatatgtgacggtccaatcaatatagactcattgtgcaatggtaggcgcaatgcacaaacgttcacaacaacatcaaatcgtcgattccaaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaaatcacaAGTGCGACGCAAAGCTCACAGA---AAGGGGAAGACTATTGCCGGTTTTCACCGCG-C-GGTTGGTAAATGTACAAC-TTGCAGGAGTTTGGGTG-------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGG-TCAC--CCGCG-ACG---TGGTAT-ATGTACAGCTAAGCAATAGG-C----TTCGG-ATAAAATCTGAAAA--TAA-TACTATAGGA-CGCAGTCAAATGTG--TC--TAG-TT--GGGCAGGGAGGGTGGCGTGAATATTTTTTGAGCAGCAAACATGTTCTCGGTTC---TTAACCAAATG-TCAATAA--TCTTGAAAA-AAGGAAGTGACTGAG-------ATT--TAATTATCCGGAG-T-TCTTGC-ACAGGCCGGAAATAATTC-G-TCATT-AAATTTCAG-AGTTGATGTGTTTGCCAACCTGGGACCATGTCCATA-CCA-TATGGTATAA-CAGGAC---AAT-ACCCGTGG-CA-AAG-ATTCG--ATATACTAAGAACCATAGACTGCAGCTAATAT
blockSeqs : T A CGGC GGCGTA . AC A GT A C AAT ACA G G C C T C T C G GGCTAAG T A CA G CA AA G A G A G C AATC A C C A C G G TGT C TC . G TT . G T . T . AGCC ATG A . C . T C T A AAA G G T TT AT . G T A T . G GC TG A G CC . G . A A A . AA T T CGCAGTCAAATGTGTCTAG T C TG T A AT G . A . A AA C . G A A G A G T C . . G ATGTG C ACCATAT . GG T G AT . C AA AC TAGACTGC G G C C T A AT G A
blockSeqs : . . . TG . T . . . . TTA CAC G G C . . T . . A C . A CA A A A A . G A . . A . C C . A . . . . . . AAG . . T . C . G . . A . . C . A . C . . . . . . . . . . GCAGTAT . . . G A . . . . . A . . . G . T G T . . C . . G T . CAT . . T G AT . C A . . G G . C . . . G .
blockSeqs : . . . TG . G . . . . A CA G G . . . A . . T T . A . C A A A . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . C . . . . . . T . CAT . . . . CA . . A . . . . . . . G .
blockSeqs : . . . TG . C . . . . T AA G G . . . T . . G T . T . . . A . . . . . . . . . . . . . .
blockSeqs : . . . CG . G . . . . T CA G G . . . T . . . T . . . . . . . .
blockSeqs : . . . CG . C . . . . T C . . . . . . . . . . .
blockSeqs : . . C . C . . . . T A . . . . . . . .
blockSeqCons : C* ** A*
originalCons : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AGCGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATCAAGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
finalCons : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CA-AC-GA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATAT--AGCGAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATGTGTCAATTATCCCAAGAGTGATCATGAATAATAAACCACAATTTGATGATTCATGAATTATTACTTTAATGTGTGTTATTGCGCGGCGGTGAAGAGAATCTTGAACGCTACCAAAATGCATAGGGCCGCCTCGCACAAATATCAAACAAATGTACGGCCCATCAAGAGCTTATTAAGCAATGGGTATCGCAATGCACAAGCGCACGGAAATCACAAATCACAAAATGTGACCGGTCCATCAAAGGCTTTAAGCGCATTAGCGCAAATCGTCAAGAAAATAACAAATCACCAA
Unaligned ( gi|9 ): TATCAAAATTTCAATTCTACATATAGCGTTACTGGCCGCGGTGAGTAGGATACCAATGCAATAGGCTGCCTCATTACAAAACAACAACACAAAACAAGATATGACGATCCATAAATAGGCTCTTTGTGCAATGGATAAGAGCAAATGCACAATATTCTCAAAACATCAGATTTGCTCAATGGGTAAGCACAAATCGTTGGATATCCACCTCAACATATCAAACATCGTGCAACAAGTATGCAAAAATGCACTGACCTTACAAAACAACATTTCCAATGC
Unaligned ( gi|14 ): TGCATAGGACCGCCTCGCACAAAATCAAAAAAAGTGACGGTCCATCAAGAGGCTTATTTTGCAATGGGTTATCGCAAATGCACAAACG
Alignments
lowQualScore : 1111 1 1111111 22 2 1 1 2222 1 1 111 11 1 1 11 1 1 11 2222 222 1 1 1 1 1 1 222222 1 1 11 111 1 55555555 1 22 11 2222 1 22 1 1 22 1 11 22 1 7777777777777777777777777 1 22 11 1 111 1 1 333 1 3333333 11 1 11 2 1 1 1 22222 1 444444444 1 11 1 1111 1 11 11 11 33333333 1
lowQualScore : 5 5 0000 66 66 1 5 66 5 5 88888 6666 2 2 0 5 5 0 6 6 6 5 9999999 6 1 0 77 8 0 88 88 0 3 0 2 3 0 0 0000 0 2 2 8 6 8 8 444 8 33 3 5 22 88 1 1 5 5 88 3333 111 5 5 5 5 1 5 1 5 555555 3 3 7 88 666 3 6 7 55555555 3 3 6 00 88 7 6 0000 3 00 3 3 7 00 3 88 00 3 4444444444444444444444444 7 3 55 9 9 33 0 777 0 0 3 555 0 2222222 22 0 9 2 11 0 0 2 0 0 2 88888 0 0 666666666 0 33 5 2 4444 0 22 33 33 66666666 6 6 5 0 5 5 77 6 6
lowQualScore : . . .... .. .. . . .. . . ..... .... . . . . . . . . . . ....... . . . .. . . .. .. . . . . . . . .... . . . . . . . ... . .. . . .. .. . . . . .. .... ... . . . . . . . . ...... . . . .. ... . . . ........ . . . .. .. . . .... . .. . . . .. . .. .. . ......................... . . .. . . .. . ... . . . ... . ....... .. . . . .. . . . . . . ..... . . ......... . .. . . .... . .. .. .. ........ . . . . . . .. . .
lowQualScore : 7 0 6666 99 99 4 0 99 0 0 00000 5555 5 5 0 0 0 4 6 7 7 2 3333333 7 4 8 00 0 8 88 88 8 8 0 5 2 0 0 8888 0 5 5 0 0 0 0 000 0 88 3 0 00 55 0 0 5 5 55 0000 000 5 5 0 0 0 0 0 5 333333 3 3 3 33 000 3 7 3 33333333 7 3 7 00 33 3 7 3333 3 00 3 3 3 77 3 33 77 3 0000000000000000000000000 3 3 33 2 2 88 0 555 0 0 2 555 0 5555555 55 0 8 5 22 0 0 5 0 0 5 55555 8 0 222222222 0 88 5 5 5555 0 55 22 88 22222222 7 7 0 0 0 7 99 7 7
consensus : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CAACGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATATC-AAC-GAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
Reference ( family-3286 ) : AAGTGAGAT-ACGAAAA-GTC----TG--CG--CAACGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAANAAG-A-CACAGACTCACGATATCTCAAT---T---T-GTAAATAT--AGC-GAT-ATAA-GCAGTTCACAATT-AAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-TGCGAC---G-AAAGC--GCCGAAAGG-GGAAGACTATTGCCGGNNTTCACCGCGAACGNTNGGTAAATGTACATGCTTGCAGGAGTTTGGAAGTGGCGACGAAAAGCCGCGCAGAAATGGGAAGACATCCCGTGTCACCCGCGACGGTGGTANATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACGCAAAGCNCACAGA---AAGGG-AAGACTATC-CCGGTT--CACCGCGAC-GGTTGGTAAATGTACAGC-TTGCAGGAGTTTGGGTG-------GCGAC-GAAAAGCCGC-CAGAAA--GGAAGACATCCCGGGTCAC--CCGCG-ACGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAA--TAA-TACTA-AGGA-C--AGT---ATGTG--TC--TAG-TTTTGGG-AGGGAGGGTGGGG-GAATATTTTTTTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA-A-GGAAGTGA-TGAG-------ATT-GTAATT-TCCGGAGATGTTTTGT-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-ATTTCCAT--CCA-TA-GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATATACTA-GA--CA--------AGCTAATATATGCGCTATTAT-C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|1 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CAGAG--CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAAATAG-A-CACAGACTCACGATATCTCAAT---C---T-GTTAATATCAAGC-G-T-ATA--GCAGTTCACAATTCAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCATTGG-AGTT-GGG-GTCGAC---G-AAAGC--GCCGAGAGATGGAAGACTATT-CCAGGGTTCACCGCGAACGTTGGGTAAATGTACATGCTTGCAGGAG-TTGGAAGTGGCGACGAAA----GCGCAGAA---GGAAGAC-TTCCGTGTCA-CCGCGACGGTAGTAAATTGGAACCAGCTTGCCAAAGGAGTTTGGAGTGCGACG-AAAGCGC-CAGACCCA--GG-AAGACTATC-CCGG-T--CACCGCGACGGGTTGGTAAATGTACAGCTTTGCAGGG--TTGGGTGCGCGAAAGCGACAGAGAAGCCTC----AAA--GGAAGAC-TCCCGGGTCATCGCTGCGAACGGTTTGGTAAGATGTACAGCTT-GCAATAGGACAGGGTTCGGAATCAATTCGAAAGA--TAACTATTA-AGGA----AGT---ATATGGTTCGATAACTTTTTGG-AGGGAGGGTGGGG-AAATATTTTTTTGAAAG-AAAC--GTTCTCG-TTCTCTTTA-CCAAATGCTCAATAAAATCTTGGAAACA-GGAAGTGA-TAAGAGATAGTATTGGTAATT-TCCGGAGATGTTTTGTCACAGTCCGGAAA-AATTCCGCTCATTAAAATTTCAGGAGTTGT--T-TTTGCCAAACTGGGGC-ATTTCCATTCCCAGTA-GGTAAAATCC--AC-CGAATGACCCTTGGCATCAAATATTCGCGATATACT--GA--CA--------AGCTAATATAT-C-CTATTAT-C-A-AGATG-TCTGATAAA--T-AGGACAAGGTAAAT-TGTT
gi|10 : TTGACAGAAAAC--GTTCTCG-TTC---TTA-CCAAATG-TCAATAAAACCTTGAACA---GGAAGTGA-TGAG-------ATT-GTAATT-TCCAGAGATGTTCTGA-ACAG-CCGGAAA-AATTCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAACTGGGAC-AATTCCAT---CA-T--GGTAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTTGC-ATAAACTA-GA--TA--------AGCTAATATATGCGCTATTATCC-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTT
gi|11 : AAGTGAGAT-ACGAAAA-GTC----TG--TG--CAATGA-CA--TAAA-A-A--A--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G--ATATTAA-AAG-A-CACAGACTCACGATATCTCATT---C---T-G
gi|12 : aattcaaatcacaaatagtctcaGAAAA-GTCCGGCTG--TG--CAAGGA-CA--TAAA-C-A--T--GTTCAATTGC-AA-CATAGTGGCCATGC-GCAAAGT-G-CATAATAA
gi|13 : AAGTGAGAT-ACGAAA--GCC----TT--CC--AAACGA-CT--AAAA-C-AAAT--GTTCAATTGC-C----TAGTG-CCATGCCGCAAAGT-G-CATATTAACAnnnnnnnnnnnnnnnnnnnnnnnnngaataattcaacattgcttaag
gi|15 : aaatagttctctTAT-CCA-AGATG-TCTAATAAA--TCAGGACAAGGTAAAT-AGTTga
gi|16 : -C-A-AGATG-TCTGATAAA--TCAGGACAAGGTAAAT-AGTTccg
gi|17 : TTAT-CCA-AGATG-TCTGATAAA--TCAGGA
gi|2 : -CCATTGG-AGTT-GGGGTGCGAC---G-AAAGC--GCCAAAAAG-GAA
gi|2 : GG---AAAGG-AAGACTATC-CCGGTT--CACCGCGAT-GGTTGGTAAATGTGCAGC-TAGCAGGAGTT-GGGTG--------CTAC-GAAAG--CGC-CAGAAA--GGAAGACATTCCGGGTCAC--C-GCG-ATGG-TTGGTAA-ATGTACAGCTT-GCAATAGGACA-GGTTCGG-ATCAAATCTGAAAAAATAA--ACTA-AAGAGC--AGT---AT--------------TTTGGG-AGGGAGGGTGGGG--AATATTTTTT-GACCGAAAAT--TTTCTCG-TTC---TTA-CCAAATG-TCAATAAAATCTTGAAAA---GGAAGTGC-TGAG-------ATT-GCAATT-TACGGAGTTGTTTAGT-ACAG-CCGGAAA-AAATCCG-TCATT-AAATTTCAGGAGTTG---T-TTTGCCAAGCTGGGAC-ATTTCCAT---CA-T--GGCAAAA-CC--ACTCGAATGACCCTTGG-AT-AAA-ATTCGC-ATTTACTA-GA--CA--------AGCTAATATATGCGCTATTAT-T-A-catnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaaggaagactatcccggttcaccgcgatggttggtaaatgtgcagctagcaggagttgggtgctacgaaagcgccagaaaggaagacattccgggtcaccgcgatggttggtaaatgtacagcttgcaataggacaggttcggatcaaatctgaaaaaataaactaaagagcagtattttgggagggagggtggggaatattttttgaccgaaaattttctcgttcttaccaaatgtcaataaaatcttgaaaaggaagtgctgagattgcaatttacggagttgtttagtacagccggaaaaaatccgtcattaaatttcaggagttgttttgccaagctgggacatttccatcatggcaaaaccactcgaatgacccttggataaaattcgcatttactagacaagctaatatatgcgctattattatacactgttggg
gi|3 : ccattggagttggggtgcgacgaaagcgccaaaaaggaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatT-C-ATAGATG-TCTGATAAA--TC-GGACAA-GTAAAT-tacactgttggg
gi|3 : atAAATGAGAT-ACAAAAA-GTC----TG--TG--CAACGAACA--TTTA-C-A--T---TTATATTGCACA-TATA-TGGCCATGC-GCAAAGTCG-CA-ATTAATAAGTA-CACAAGATTACAATATC-CAAT---T---TTGTAAATAT--AGC-GATCATAAAGCAGTTCACGATT-AAAGCCAAAGTGCGTTTGAA----TTACT-AG-A-TCTT-CCATTGGCAGTT-AAG-TGCGAC---GCAAAGCTCACAGAAAGG-GGAAGACTATTGCCGGTTTTCACCGCG--CGGTTGGTAAATGTACA-ACTTGCAGGAGTTTGG--GTGACAACGAAAAGCCGCGCAGAAATGGGAAGACATCCCG-GTCACCCGCGAC-GTGGTATATtattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcaaatgagatacaaaaagtctgtgcaacgaacatttacatttatattgcacatatatggccatgcgcaaagtcgcaattaataagtacacaagattacaatatccaattttgtaaatatagcgatcataaagcagttcacgattaaagccaaagtgcgtttgaattactagatcttccattggcagttaagtgcgacgcaaagctcacagaaaggggaagactattgccggttttcaccgcgcggttggtaaatgtacaacttgcaggagtttgggtgacaacgaaaagccgcgcagaaatgggaagacatcccggtcacccgcgacgtggtatat
gi|4 : attcatagatgtctgataaatcggacaagtaaattattccatgtttatattattatgcttgatgcgttaagaactggcctctgggaattttgaggctacgtaaaaatgggctgcgctcgagcacaaaacaacaaaacttaggtgacggtccatcaaaatagatctcatgtgcaatggtaggcgctaaagatggcgcaaagtacgtacaacacatcacaaatcatcatcaaatcacaacaaatcagtcattcaaatcacaataggggcttcTAT-C-A-AGATGATCTGATAAAATCCAGGACAA-GTAAATAAGTT
gi|4 : AAATGAGATTACGAAAAAGTC----CGGGCGTACAAGGA-CAGTTAAA-CCA--T--GTTCAATTGC--A-CATAGTG-CCATGCCGCAAAGT-G-CAAGATAAAAAG-ACCACATACTCACA--ATTTCAATGGCTAAGT-GTAAAT-T--AAC-GAT-ATAA-GCAG-TCACAAcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaaaatgagattacgaaaaagtccgggcgtacaaggacagttaaaccatgttcaattgcacatagtgccatgccgcaaagtgcaagataaaaagaccacatactcacaatttcaatggctaagtgtaaattaacgatataagcagtcacaa
gi|5 : tatcaagatgatctgataaaatccaggacaagtaaataagttcgagttaatatttgttgctgcgttactgccgccgggtgaattttcgaggcaccagtacaaaatcgtggtgcctcgcacaaaaaaaaacaaacaaatcacaacaaaagtacggtgacgcgtccatcccaaaagagactcttgtgcatgaggcgcattccacaaacagtcagcaaaacatcaaaatcattacaattcaaaatcacacaaatcatcaatttcaaattcacataaatcaaattcaattcaatcacaccaaacattcaatctcaaatccacccaaaatctatcaatcaaaaatcaacaaacatatatgtgcaAT-ACGAAAA-GTC----TG--CG--CAACGA-CA--TAAAAC-A--TTAGTTCAATTGC-CACCATA-TGGCCATGC-GCAAAGT-GTCATATTAATAAG-A-CACA-ACTCCCGATATCTCAAT---T---T-GTAATTATC-AACTGAT--TAA-GCAGTTCAC-ATT-AAA-CC-AA-TG-GTTTGAAAATCTAAGTAAGCACTCTTACCACTGGAAATT-GGG-TGCGACTGTG-AAAGC--GCC
gi|6 : atccaaagaggtcttgacaaattcatggacaaggtaacgtagtcccgatgtttatatttgttgatgcgttactggccacggtgatatttgagcttaccgtagcaatatgctcgctctgcacaaaaccaacaaaaatccaacaaaattatgtgactccaatcaattaggactcattgtgcaatggttaggcgcaatgcacaagtcacaaacaacatcataatcgtcgattcaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaatcacagacaGACAT-ACGAAAA-GTC----TG--CG--CAACGA-CA--TAAA-C-A--T--GTTCAATTGC-CA-CATAGTGGCCATGC-GCAAAGT-G-CATATTAATAAG-A-CACAGACTCCCGATATCTCAAT---T---T-GTTAATATC-AAC-GAT-ATAA-GCAGTTCACAATTAAAAGCCAAA-TG-GTTTGAAA---TTAGT-AGCACTCTT-CCACTGG-AATTGGGG-TGCGAC---G-AAAacttgcaa
gi|7 : ttcatccaaagaggtcttgacaaattcaggacaagggtaagatgtcccgatgtttattattttgttgatggcgttactggccaggtgaattttgagcttaccgtagcaatatgggctgctcttcgcacaaaacaacaaaatcaacaaaatatgtgacggtccaatcaatatagactcattgtgcaatggtaggcgcaatgcacaaacgttcacaacaacatcaaatcgtcgattccaaatcacactaaatcatcaatttcaacatcacacaaatcatcaattcaaatcacaAGTGCGACGCAAAGCTCACAGA---AAGGGGAAGACTATTGCCGGTTTTCACCGCG-C-GGTTGGTAAATGTACAAC-TTGCAGGAGTTTGGGTG-------ACAAC-GAAAAGCCGCGCAGAAATGGGAAGACATCCCGG-TCAC--CCGCG-ACG---TGGTAT-ATGTACAGCTAAGCAATAGG-C----TTCGG-ATAAAATCTGAAAA--TAA-TACTATAGGA-CGCAGTCAAATGTG--TC--TAG-TT--GGGCAGGGAGGGTGGCGTGAATATTTTTTGAGCAGCAAACATGTTCTCGGTTC---TTAACCAAATG-TCAATAA--TCTTGAAAA-AAGGAAGTGACTGAG-------ATT--TAATTATCCGGAG-T-TCTTGC-ACAGGCCGGAAATAATTC-G-TCATT-AAATTTCAG-AGTTGATGTGTTTGCCAACCTGGGACCATGTCCATA-CCA-TATGGTATAA-CAGGAC---AAT-ACCCGTGG-CA-AAG-ATTCG--ATATACTAAGAACCATAGACTGCAGCTAATAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATGTGTCAATTATCCCAAGAGTGATCATGAATAATAAACCACAATTTGATGATTCATGAATTATTACTTTAATGTGTGTTATTGCGCGGCGGTGAAGAGAATCTTGAACGCTACCAAAATGCATAGGGCCGCCTCGCACAAATATCAAACAAATGTACGGCCCATCAAGAGCTTATTAAGCAATGGGTATCGCAATGCACAAGCGCACGGAAATCACAAATCACAAAATGTGACCGGTCCATCAAAGGCTTTAAGCGCATTAGCGCAAATCGTCAAGAAAATAACAAATCACCAA
Unaligned ( gi|9 ): TATCAAAATTTCAATTCTACATATAGCGTTACTGGCCGCGGTGAGTAGGATACCAATGCAATAGGCTGCCTCATTACAAAACAACAACACAAAACAAGATATGACGATCCATAAATAGGCTCTTTGTGCAATGGATAAGAGCAAATGCACAATATTCTCAAAACATCAGATTTGCTCAATGGGTAAGCACAAATCGTTGGATATCCACCTCAACATATCAAACATCGTGCAACAAGTATGCAAAAATGCACTGACCTTACAAAACAACATTTCCAATGC
Unaligned ( gi|14 ): TGCATAGGACCGCCTCGCACAAAATCAAAAAAAGTGACGGTCCATCAAGAGGCTTATTTTGCAATGGGTTATCGCAAATGCACAAACG