lowQualScore : 11111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 2 777777777777777777777777777777 4444 33 111 222 1 55555 33 2222222 3333 4444444444 1 4 2 2 2222 66666666666666666666666666666666666666666666666 2 4 33 00000000000000000000000000000000000000000000000000000000 1 2 666666 1 1 1 6666666666666666666666666666666666666666 555555555555 4444 222222 4444 22222 33 11 2222222 1 44444444444444 555555555555 22 1 2 222 6666 2 1111 1 1 3 2222 555 1 222 1 333333 333 555555555 22222222222222 7777777777777777777777777777777777777777777777777777777 33 55555 333 11 55555 4 555 1 666666666 22 1 3 11 4 1 555555555555555555555555 2222 444444 6666666666666666666666666666666666666666666666666666666666666666666 4 3333333 333 22 111111111111111111111111111111111111111111111 4 4 11 4 55 6666666666666666666666666666666
lowQualScore : 6 777777777777777777777777777777 6666 00 777 8 555 3 22222 11 4444444 7777 4444444444 7 0 0 0 2222 33333333333333333333333333333333333333333333333 8 0 22 00000000000000000000000000000000000000000000000000000000 4 6 2 0 0 555555 7 2 5 5 3333333333333333333333333333333333333333 7 666666666666 7 3333 222222 2222 0 00000 55 11 6666666 0 88888888888888 555555555555 44 0 0 777 1111 0 5555 0 5 3 4444 222 5 111 0 6 7 666666 7 000 999999999 7 66666666666666 6 7 0000000000000000000000000000000000000000000000000000000 55 33333 6 666 55 66666 6 0 222 5 000000000 22 0 0 44 7 4 6 0 3 8 8 9 6 6 6 666666666666666666666666 6 8888 333333 0 6666666666666666666666666666666666666666666666666666666666666666666 0 4444444 5 5 4 2 222 44 000000000000000000000000000000000000000000000 0 0 44 0 55 6 3 9999999999999999999999999999999
lowQualScore : . .............................. .... .. ... . ... . ..... .. ....... .... .......... . . . . .... ............................................... . . .. ........................................................ . . . . . ...... . . . . ........................................ . ............ . .... ...... .... . ..... .. .. ....... . .............. ............ .. . . ... .... . .... . . . .... ... . ... . . . ...... . ... ......... . .............. . . ....................................................... .. ..... . ... .. ..... . . ... . ......... .. . . .. . . . . . . . . . . . ........................ . .... ...... . ................................................................... . ....... . . . . ... .. ............................................. . . .. . .. . . ...............................
lowQualScore : 7 555555555555555555555555555555 2222 00 555 8 000 3 00000 00 5555555 5555 0000000000 0 0 0 0 0000 55555555555555555555555555555555555555555555555 5 0 55 55555555555555555555555555555555555555555555555555555555 0 0 5 5 0 555555 0 5 0 0 8888888888888888888888888888888888888888 3 000000000000 3 0000 222222 2222 8 88888 88 00 8888888 0 22222222222222 555555555555 22 0 0 555 0000 0 0000 0 0 8 8888 000 0 000 0 7 3 000000 0 000 777777777 3 33333333333333 7 3 7777777777777777777777777777777777777777777777777777777 33 00000 0 000 00 33333 0 0 000 0 222222222 55 0 0 77 3 0 0 0 0 0 0 2 7 7 7 333333333333333333333333 7 7777 222222 8 3333333333333333333333333333333333333333333333333333333333333333333 0 0000000 6 0 0 0 000 55 333333333333333333333333333333333333333333333 0 0 00 0 00 0 6 8888888888888888888888888888888
consensus : TAAGGGGATTCGACCCTCTGCTCTAAA--TTTCACC---AAAATTTTTTTT---A--AATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATT-C-AA-TGGAAAATAGTT-TGAGGTATTGAAGCGGTNCTTNCGTTTTCTCTGAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAAATTTGACACACTGAATAGAAAGATCAATAAAT-ANTATCACACCACTAAATTAAAAGCATGACGATAAAAATATGAGGTATACAATCAA-AATAATATTTAGTGTCNCAAATACATAATAAATTAATAT-TTAAANAAC--ATAGTGAAGCGTGC-GC--TTNTTTGATNANAATTCTCTCTTTNTAACCCATGGNTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCTC-AAAA--AAAATCTG--AAAA----GAAACTA---ATATGGAAATTTT------ACA---TGATACTAAGTAAATCAT----T-GCAGAATTTTTAAATT-ATATTATAA-AGAAGT--AAAAAA-A---GGTAAAGA-AAATGTAANAAGTA-AATCGAATTATTT-TAG-GTTG-AATTTGTAAA-TGTACATCA-GAAAA---TGCTGG---TAAAAGAAA-AN-TTG-AGTCATTGTT-TGCAT-AA-TTTGA--AATTAGCAA-TCAA-TAGGTACGGTCAT-GATGAAGGAATTCTATAGTGG-CCTT--CTATGTACTGAGATACAGAT--GATNATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTG-ATTCCAT-CACG-ACAA-TCT-C-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AGTCCTGAGT-TGCAATTTTCTCCGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTA----GGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGNGATGTTACATNNNNNNCTGGGGTGGC-TTCC-C-AAAGTGAACAAA-A-CAAACAA-GTTTATATACACA-A---TTC-----A-C-TT-ATATACACA-A-CACAG-ATAACTACATGTTCAATATTCATCTTTTT-GCTCGGGNT-AT-TCG---GT--T-ACGTCCAATGC-ATACTGTATG----TTA--GTTGGTCCACGTAGAACAC-------TCCAATTGATACAANCATCAACAGCGGGA-CCTACACACA--AAAAAAATACACATTAAG--TTACACACATTCATATA-AAG--TATGACTCACATA-GTCCG-CCATGTCTGA-TTACG--GGGAACTAATGCNATTACACGTGGCAGC-GCT--GCTTTATCTTTAACTT-GTAC
Reference ( gi|1 ) : TAAGGGGAT-CGACCCTCTGCTCTAAA--T--CACC---AAAATTTT-------A--AATATTCTACATGGATTTATCCATCATCAACAATAGGCTT---AGATT-C-AA-TGGAAAAT-GTTGTGAGGTATTGAAGCGGTGC-TAC-TTTTC-C--AAATGAAAATTTTTTTTGTCTAATCAAGATAT-AAG-AAA-TTTGACACACTGAATAGAAAGAT-AA-AAATGATTATCA-ATCAT--AATTGAAAACATAAAGG-AAAAATAT----TATACATTCAAGAATAAAATTTAGTG-CTCAAGTACGTAA-GAATTAATATTTTAAAAAATTAGTAGTGAAGCGTGTAGCCTTTTTTTGGTCAGAATT-TCTA--TGAAATCTTTGGGTGTGAAAAATTGCGTCCAGCAGCAAGAGTTATCTTGTCTT-AA----AAAAT-TG--AAAA----GAAACGAC--ATATGGAAATTTT------ACATGTTGATACTAGAT-AATCAT----T-GCAGAATCTTTAAATT-ATATTATAACAGAAGT--AAAATA-A---GGTAAAGA-AAATATAATAAGTA-AGGCGAATTATTTGTAGAGTT--AATTTGTAAT-TGTACATCA-G-AAA---TGCTGGCGTTAAAAG-AA-AT-TTG-AGTAATTGTTGTGCAT-A--TTTGATGAATGAGC-A-TCAA-TAGGTACGGTCATGGATTGAGGAATTATATAGT-G-CCTTGATCATGT-CTGAGATACAGAT--GATAATTTTTTGGGATCTGTTTGTCACTCTTGCCTTCCCA---GTATTCTCA-A-AAAT-CCAATCGTTGAATTCCATGCAGGAACAACTCT-T-ATCGAATGCCACGTTTC-AAT-ATGTAGACAAGAGGTCCTGAGTATGCAATTTTCTCTGACAAGATGG-TAAAGA-ACATGAAAGCTTCTCCTGACGTA----TGG--TTCTGAACCT-AAAACATC-AAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGAGGTGGCGTTTC-C-AAAGTGAACACA-A-CAAACAA-GTTTATAT-CACA-A---TTC-----A-C-TT-ATATACACA-AACACAGAATAACTACATGTTCAATATC--TCTTTTT-GCTTGAGCTGATCTCG---GT--TAACATCCAATGCAATATTGCATACTGATTAGTGTTGGTCCACGT-GAACAC-------TCCAATTCATACAATCGTCAACGGCGGGACCCTACACACACGCATAAAATCCAC-TTAGG--T---ACCCATTTTTATACAAGTTTATGAC-CACATAGGTCCG-CCATATTTGACTTACGCTGGAAACTAATGCAATTACACTATGCAGCGGCC--TCTATATCTTAAACTTGGTACATC
gi|13 : TAAGGGGATTCGACCCTCTGCTCTAAATTT--CACCAAAAAAATTTA-------A--AATATTCTACCTGCATT--TCCATCATCAACAATAGCATTATAAGATT-CAAA-TGGAAAATAGTT-TGAG
gi|2 : AAGGGATT-CGACCCTCTGCTCTAAA--TTTCACC---AATTTTTT-------TTTAATATTCTACATGGATTT---CATCATCAACAATAGCATT---A-ATTGA-AA-AGGAAAATAGTT-TGAGGTA-TGAAGCGGTGCTTACGTTTTCTC--AAATGAA----TTTTTTGTCTAATCATGATATGAAGAAAA-TTTGACACACTGAATAGAAAGATCAATAAAT--TTATT--ATCAC---------AGCATAAAAATAAAAATATGAGGTATACA-TCAA-AATAATATTTAGTG--TCA--TACATAATAAATTAATA--TTAAAAAAC--ATAGTGAAGCG-GT-GC--TTTTTTGATCATAATT-TCTCTTTGTAATCTATGGTTGTGAAAAATTGCGTCCAGCATCAA-AGTTATCTT-TCTTCAAAAC-AAAATCTGAAAAAA----GAAATTA---ATATAGAAATTTG------ACA--TTGATACTAAGTAAATCAT----T-GCAGA--TTTTAAAT---TATTATA----AAGT--AAAAAT-A---GGTAAAGA-AAATGTAAGA---A-AATTGAATTATTT-TAG-GTTG-AATTTGTAAA-TGTACATCT-GAAAA---TGCTGG---TAAAAGAAA-AA-TTG-AGTCATTGTT-TGCATAA--TTTGA--AATTAGCAA-TCAA-TAGATACGGTCAT-GATGAAGGAATTCTATAGTGG-CCTTG--TATGTACTG-GATACAGAT--GA-GATTATTTTGGATCTGTCTGTCACTCTTGCCTTCCCATTTGTTTCCTCAGA-AAAG-AGAATC-TTG-ATTCCAT-CACG-ACAA-TCT-CAATCGAATGCCA-GTTTCAAATGATGCAGACAAA-------GAG-------TTTTCTACGACAAG-TAGCTGAAGAGACATGAAA--TTTTCCTGACTTA----GGGTTTTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAA-AATCTAGAGTCTTCAAGTGATGTTACAT
gi|3 : GGGGATTCGACCCTCTGCTCTAGA--TTTCACC---A---TTTTTTTTT--A--AATATTCTACATGGATTT--TCATCATCAGCAATAGCATT---ACATT-C-AAATGGAAAATAGTT-TGAGGTAT-GAAGCGGTCT-TCC-TTTTT-CTGAAATGAATATTTT----GTCTAATTATGATATGAAG-AAAATTTGACACACTGAATAGAAAGAT-AA-AAA--AATATCACACCATTAAATTAAAAATATGACG--------------TATACAATCAA-AATAAT-TTTAGTGTCACAAATA-------AATTAATAT---AAATAAC--ATAGTGAAGTGTGC-----TTATTTAATAAAAATTCTCT---TCTAACCCATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCTC-AAAAACAAAATCTG--AAAA----AAAA--ACTAATATGG-AATTTT------ACA---TGAT-CTAAGTGAATCAA----T-GCAGA--TTTTAAACT--TATTATGA-AGAAGTAAAAAATA-A----GTAAAAG-ATATTTAATAAGT-----CGAATTAT---TAGATTG--AATTTGTAAA-TGTACATCA-GAAAA---TGCTGG---TAAAAGAAA-AT-TTGCAGTCATTGTT-TGCAT-AATTTTGA--AATTAGCAA-TCAA-TAGGTAT-GTC-TTGATGAAGGAATTATATAGTAG-CCTT--CTATGTACTGAGATACAGATCAGGTTATTTT---GGAT-TGTTTGTCACTCTTGTC-TCCCAT--GTTTCCTCA-AGAAAT-AGAATC-TTG-ACTCCAT-CATG-ACAA-TCTAT-ATCGAATGCCAT-TTTCAAATGATGCAGACAAATAGTCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAA---TTCTCCTTACTTA----GGGC-TTTTGA--CT-AAAACATCAAAAACAAAGTTCTGTAAATAA-CTAGAATgctg
gi|14 : TGCTCTAAA--T--T-TC---ACAATTTTTTTTAAAA--AACATTCTAAATGGGTTT--CCATCATCAACAATAGCATT---AGA
gi|11 : ggggat-AA----AAAATCTG--AAAAAAAAGAAACTAA--ATATGGATTTTTTTTTTTAACATG-TGATACTAAGTAAATCATTATGT-ACAG-ATATTT-AATT-AT-TTAGAA-AGAAGT--AAAAAACA---GGTAAAGc
gi|8 : aaaTCAT----TTGCAGGAT-TTTAAACTCATCTTATAA-AGAAGT--CAAACA-AATCGGTAAAGACAAATA----AAGTAGAGTCGAATTATTC-TAG-GTTGCAACTTTTAACATGTACATCACG-AAACACTGCTGG-GT-AACAT-AACAT-TTG-AGTCATTGTCTTGCAT-A--ATTG--CAATCAGC-A-TCGACTAGG
gi|4 : catgtgaactacagtcaaactAAATT-AT-TTATAA-AGAAGT--AAAAAATA---GGTAAAGA-AAATGT--CAAATA-AATTGAATTATTT-TAG-GTTG-AATTTGTAAA-TGTACACCA-G-AAAA--TGCTGG---TAAAAG-AA-AAATTG-AGTCATTGTT-TGCAT-AA-TTTGA--AATTAGC-AATCAA-TAGGTACGGTCATG-AT---GGAATTCTAAAGT-GGCCTT--TTATGTACTGAGATACAGAT--GATA-TTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTCTTTCCTCA-G-AAATGAGAATC-TTG-ATTCC-------------------ATCAAATGCCA-GTTTCAAATGATGCAGACAAAGAGTCCTGAGTTTGCAATTTTCTCTGGCATG-TGGCTGAAGAGACATGGAA--TTCTCCTGACTTAATTTTG----TCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAAT-ATCTAGAGTCTTCAAGAGATGTTAgtatgagctatgagaa
gi|16 : gcGAAA--TTCTCCTGACTTA----GGGTTTTCTGAGCCTAAAAACATC-AAAA
gi|12 : CTGGGGTGAC--TTC-CGAAAGTGAACA-A-A-CAAACAATATTTATATACACT-A---TAT-----A-C-TTTATATACACA-A-C-CAGAA---CTACATGTTCAATATTCATCTTTTG-GCTacatactgtac
gi|5 : TGGGGTGGC-TTCC-C-AAAGTGAACAAA-AACAAACAA-GTTTGTATACACATA---TTCCATAAA-A-TT-ATATACACA-A-CACAGA-TA-CTACATGTTCAATATT--CATCTTTGGCTGGGAC--AT-TCG---GTCGTTACATCCAA--------TGCATACTG-TTA-TGTTGGTCCACGTAGAACACT------TCCAATTCATACAATCGTCAACAGCGGA--CCTATATACACA-AT-AAATACAC-ATAAAATT---ACACA---CAATACAAG-ATATGACTCACATA-GTCTGTTCATATTTGA-TTACG-GGGGAACTAAT-CAATTACACGTGGCAGC-GCT--GCTTTA-CTTTAACTT-GTACcaggtattcgttcgt
gi|6 : GGTGGC-TTCC-C-AAAGTGAACAAA-A-TAAACAA-GTTTAT----ACA-AATTTTC-----ATT-TT-ATATACAC--CACATAG-ATAA-TACATGTCGAATAT---TCATCTT--CTC-AGGT-AT-TC----GT--T-ACGTCCAATGC-ATACTGTATG---------GTTGATCCACGTAGAACAC-------TCCAATTGATATAAACATCAA---CGGGA-CCTACACACA--AAAAAAATACACATTAAG--TTACACACATTCATATA-AAG--TATGACTCACATA-GTCCA-CCATGTCTAA-TTACG--GGGAACTAATGCCATTACACGTGGCAGC-GCT--GCTTTATTTTAAGTT--GTACtaaatg
gi|7 : cgGGTGGC-TTCCAC-AAAGTGAACAAA-A-TAAACAA-GTTTAT----ACA-AATTTTC-----ATT-TT-ATATACAC--CACATAG-ATAA-TACATG-TCGATAT---TCATCTT--CTC-AGGT-AT-TC----GT--T-ACGTCCAATGC-ATACTGTATG---------GTTGATCCACGTAGAACAC-------TCC-ATTGATATAAACATCAA---CGGGA-CCTACACACA--AAAAAAATACACATTAAG--TTACACACATTCATATA-AAG--TATGACTCACATA-GTCCA-CCATGTCTAA-TTACG--GGGAACTAATGCCATTACACAGTGCAGC-GCT--GCTTTATTTTAAGTT--GTACtaaa
gi|10 : cgTGGC-TTCC-C-AAAGTGATCAAA-A-CACACAA-GTTTATATACACATA---TTC-----A-CTTT-ATATATACACACCACAG-AT-ACTATATGTTCAATATTCATCTTTTG-GCTCGGGC--AT-TCGTTCGT--T-GCATCCCATTCAtaaa
gi|9 : AACAAACA-CAAACAA-GTTCATATACAC--A---TTC-----A-CTTT-AAATACACA-ATCACAG-AT-ACTACAta
gi|18 : gtggtttcccatttatTTAG-GATGGTCCACGTAGAACAC-------TCCAATTCATACAActtttggctcgggtattcgttggtccacgtagaacacaacacactccctttgctacagtcattaacaatggaacct
gi|9 : gGTTGGTCCACGTAGAACACAACACACTCCCTTTGCTACAGTCATTAACAATGGAACC
gi|15 : gtggtttcccatttataacaaacacaaacaagttcatatacacattcactttaaatacacaatcacagatactacacttttggctcgggtattcTATTTGA-TTACG--GGGAACTAATGCGATTACACGTGGCAGC-GCTGGTTTA---CTTTAACTT-GTACt
gi|17 : TTACG--GGGAACTAATGCAATTACAC------GTGG-C--TTTA---CTTTAACTT-GTACtaaat
Alignments
lowQualScore : 1111111111
lowQualScore : 11111111111111111 11 111 1 111 1 2 1 2 222 33 1 1 3333 333 0000000000 111 1 1 1 2222222 333 11 333333 2222222 1 1 22 1 3333 111 222222 222 111 1111 111 1 2222 11111 1111 1111 111 11 111 22 11 111 1 1 1 1 33333333333333 1 2222 333 1 11 11 111 11 22222222222222222 111 222 222 2222222222 444444444444 2222222 222 111 1 11 1 1 22
lowQualScore : 3 0 66666666666666666 11 444 5 0 777 3 0 3 4 88 3 888 7 7 6 99 5 6 6666 6 3 999 9999999999 222 6 3 7 7 4 7777777 666 1 88 7 777777 1 1 1 5555555 1 0 0 1 6 3 3 33 3 0 5555 111 3 888888 8 555 11 8 8 111 7777 8 999 11 9 6 6 0000 8 11111 7777 1 0 8 8 8 8 4444 8 444 11 8 8 8 999 11 11 8 8 8 8 55 2 2 888 3 3 66 2 3 88 444 0 0 0 0 00000000000000 0 3 2 9999 333 2 0 2 2 3 11 5 44 8 0 0 0 66 3 1 666666 5 5 000 999 5 4 33 66666666666666666 5 5 5 000 3 0 111 999 5 9999999999 2 6 000000000000 6 1111111 6 3 2 1 000 3 8 666 3 3 3 0 0 33 3 0 0 6 6 99 1 6 2 6 22 6
lowQualScore : . . ................. .. ... . . ... . . . . .. . ... . . . .. . . .... . . ... .......... ... . . . . . ....... ... . .. . ...... . . . ....... . . . . . . . .. . . .... ... . ...... . ... .. . . ... .... . ... .. . . . .... . ..... .... . . . . . . .... . ... .. . . . ... .. .. . . . . .. . . ... . . .. . . .. ... . . . . .............. . . . .... ... . . . . . .. . .. . . . . .. . . ...... . . ... ... . . .. ................. . . . ... . . ... ... . .......... . . ............ . ....... . . . . ... . . ... . . . . . .. . . . . . .. . . . . .. .
lowQualScore : 2 8 88888888888888888 00 000 0 0 555 2 0 7 0 33 3 777 3 3 7 00 0 0 7777 7 7 777 3333333333 333 0 3 3 3 0 0000000 000 0 33 3 333333 0 0 0 0000000 0 7 7 0 7 3 3 88 2 0 0000 000 2 888888 0 000 66 0 0 888 0000 0 222 88 5 7 7 2222 0 22222 4444 8 8 0 0 0 0 8888 0 000 88 0 0 0 666 00 66 0 0 0 0 88 5 5 000 2 2 22 5 2 55 888 0 0 0 0 88888888888888 0 2 5 5555 222 0 0 5 5 8 00 6 44 0 8 8 6 55 2 0 000000 7 7 000 444 7 3 11 33333333333333333 7 7 7 777 6 7 444 111 7 2222222222 2 7 111111111111 7 7777777 7 5 5 0 000 2 0 888 2 2 2 2 0 88 2 0 0 7 7 22 0 7 5 7 22 7
consensus : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTTCTC--AAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAA-TTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCAT--AATTAAAA--------G-AAAAATATGA-GTATACA-TCAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATT-TCTCT-TGTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTG-AAAAAA--GAAACTA-A-TATGGAAATTTT------ACAT-GT--ATACTA-AGT-AAA--TCAT----T-GCAGA-ATTTTTAAATTAT-TTATAA-AGAAGT-AAAAAATA--GGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAG-TATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--C-----AC-T---TTATATACAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGG-T-AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
Reference ( family-3264 ) : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTATTGAAGCGGTNCTTNCGTTTTCTCTGAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAAATTTGACACACTGAATAGAAAGATCAATAAAT--ANTATCACACCACTAAATTAAAAGCATGACGATAAAAATATGAGGTATACAATCAA-AATAATATTTAGTGTCNCAAATACATAATAAATTAATATTT-AAANAAC--ATAGTGAAGCGTGC-GC--TTNTTTGATNANAATTCTCTCTTTNTAACCCATGGNTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTG-AAAA----GAAACTA-A-TATGGAAATTTT------ACAT-G---ATACTA-AGT-AAA--TCAT----T-GCAGA-ATTTTTAAATTATATTATAA-AGAAGT-AAAAAA-A--GGTAAAGA-AAATGTAANAAGTA-AATCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAANTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTCTATAGTGGCCTT--CTATGTACTGAGATACAGATGATNATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-C-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAG-T-TGCAATTTTCTCCGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGNGATGTTACATNNNNNNCTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--C-----AC-T---T-ATATACAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTTGCTCGGGNT-AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTGATACAANCATCAACAGCGGGA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATGTCTGA-TTAC-G--GGGAACTAATGCNATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
gi|1 : TAAGGGGAT-CGACCCTCTGCTCTAAAT--CACCAAAATTTT----------AAATATTCTACATGGATTTATCCATCATCAACAATAGGCTT---AGATTC-AA-T-GGAAAAT-GTTGTGAGGTATTGAAGCGGTGCT-AC-TTTTCC---AAATGAAAATTTTTTTTGTCTAATCAAGATAT-AAGAAA--TTTGACACACTGAATAGAAAGAT-AA-AAATG-ATTATCA-ATCAT--AATTGAAAACATAAAGG-AAAAATAT----TATACATTCAAGAATAAAATTTAGTG-CTCAAGTACGTAA-GAATTAATATTTTAAAAAATTAGTAGTGAAGCGTGTAGCCTTTTTTTGGTCAGAATT---TCTATGAAATCTTTGGGTGTGAAAAATTGCGTCCAGCAGCAAGAGTTATCTTGTCT-TAAAA--AA---TTG-AAAA----GAAACGACA-TATGGAAATTTT------ACAT-GTTGATACTA-GAT-AA---TCAT----T-GCAGA-ATCTTTAAATTATATTATAACAGAAGT-AAAATA-A--GGTAAAGA-AAATATAATAAGTA-AGGCGAATTATTTGTAGAGTT--AATTTGTAA-TTGTACATCAGAAA----TGCT-GGCGTTAAAAGAAA-TTTG-AGTAATTGT-TGTGCATA--TTTGATGAATGAGCA-TCAA-TA-GGTACG-GTCATGGATTGAGGAATTATATAGTG-CCTTGATCATGT-CTGAGATACAGATGATAATTTTTTGGGATCTGTTTGTCACTCTTGCCTTCCCA---GTATTCTCA-A-AAAT-CCAATCGTTGAATTCCATGCAGGAACAACTCT-T-ATCGAATGCCACGTTTCAA-T-ATGTAGACAAG-AGGTCCTGAG-TATGCAATTTTCTCTGACAAGATGG-TAAAGA-ACATGAAAGCTTCTCCTGACGTATGGTT--CTGAACCT-AAAACATCAAAA-CAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGAGGTGGCGTTTC-CA---AAGTGAACACA-A-CAAACAA-GTTTATAT-CACA-ATT--C-----AC-T---T-ATATACACAAA-CACAGAATAACTACATGTTCAATATC--TCTTTTTGCTTGAGCTGATCTCG---GT---TAACATCCAATGCAATATTGCATACTGATTAGTGT-TGGTCCACGT-GA-------ACACT-CCAATTCATACAATCGTCAACGGCGGGACCCTACACACACGCATAAAATCCAC-TTAGGT---ACCCATTTTTATACAAGTTTATGAC-CACATAGGTCCGC-CATATTTGACTTAC-GCTGGAAACTAATGCAATTACAC-TATGCAGCGGCCTCTATATCTTAAACTTGGTAC
gi|10 : TGGC-TTCC-CA---AAGTGATCAAA-A-CACACAA-GTTTATATACACATATT--C-----AC-TTTAT-ATATACAC-AC-CACAG-AT-ACTATATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCGTTCGT---T-GCATCCCATTC-ATAatc
gi|11 : AAAA--AAAATCTG-AAAAAAAAGAAACTA-AATATGGATTTTTTTTTTTAACAT-GTG-ATACTA-AGT-AAA--TCATTATGT-ACAGATATTT---AATTAT-TTAGAA-AGAAGT-AAAAAACA--GGTAAAG
gi|12 : aCTGGGGTGAC-TTCC-GA---AAGTGAACAAA---CAAACAATATTTATATACACT-ATA--T-----AC-T---TTATATACAC-AA-C-CAG-A--ACTACATGTTCAATATTCATCTTTTGGCTCAGG-T-AT-TCG---
gi|13 : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAA----AAATTTA---AAATATTCTACCTGCATTT--CCATCATCAACAATAGCATTATAAGATTCAAA-T-GGAAAATAGTT-TGAGttcgt
gi|14 : TGCTCTAAATTTCAC---AATTTT---TTTTAAAAAACATTCTAAATGGGTTT--CCATCATCAACAATAGCATT---AGA
gi|15 : ggggatTATTTGA-TTAC-G--GGGAACTAATGCGATTACAC-GTGGCAGC-GCTGGTTTA-CTTTAACTT-GTACc
gi|16 : GAAA--TTCTCCTGACTTAGGGTTTTCTGAGCCTAAAAACATCAAAAACA---TACTGTAtaaat
gi|17 : A-TTAC-G--GGGAACTAATGCAATTACAC-GTG---------GCTTTA-CTTTAACTT-GTACc
gi|18 : ----GTTA--GGATGGTCCACGTAGA-------ACACT-CCAATTCATACAAtaga
gi|2 : AAGGGATTCGACCCTCTGCTCTAAATTTCACCAA--TTTT---TTTT---TAATATTCTACATGGATTT--C-ATCATCAACAATAGCATT---A-ATTG-AA-AAGGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTACGTTTTCTC--AAATGAAT----TTTTTGTCTAATCATGATATGAAGAAAA-TTTGACACACTGAATAGAAAGATCAATAAATTTATTATCACAGCA------TAAAA--------ATAAAAATATGAGGTATACA-TCAA-AATAATATTTAGTGTC----ATACATAATAAATTAATATT--AAAAAAC--ATAGTGAAGCG-GT-GC--TTTTTTGATCATAATT-TCTCTTTGTAATCTATGGTTGTGAAAAATTGCGTCCAGCATCAA-AGTTATCTT-TCTTCAAAAC-AAAATCTG-AAAAAA--GAAATTA-A-TATAGAAATTTG------ACATTG---ATACTA-AGT-AAA--TCAT----T-GCAGA---TTTTAAATTAT--TATAA-AG---T-AAAAAT-A--GGTAAAGA-AAATGTAAGAA----AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCTGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GATACG-GTCATG-ATGAAGGAATTCTATAGTGGCCTT--GTATGTACTG-GATACAGATGA-GATTATTTTGGATCTGTCTGTCACTCTTGCCTTCCCATTTGTTTCCTCAGA-AAAG-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-CAATCGAATGCCA-GTTTCAAATGATGCAGACAAA--------GAG--------TTTTCTACGACAAG-TAGCTGAAGAGACATGAAA--TTTTCCTGACTTAGGGTTTTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAA-AATCTAGAGTCTTCAAGTGATGTTACAT
gi|3 : GGGGATTCGACCCTCTGCTCTAGATTTCACCAT--TTTT---TTTT---AAATATTCTACATGGATTT--TCATCATCAGCAATAGCATT---ACATTC-AAAT-GGAAAATAGTT-TGAGGTAT-GAAGCGGT-CTTCC--TTTTTCTGAAATGAATATTTT----GTCTAATTATGATATGAAGAAAA-TTTGACACACTGAATAGAAAGATAAAAAAAT--A---TCACACCATTAAATTAAAA--------------ATATGACGTATACAATCAA-AATAAT-TTTAGTGTCACAAATA-------AATTAATAT---AAATAAC--ATAGTGAAGTGTGC-----TTATTTAATAAAAATTCTCT---TCTAACCCATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAAACAAAATCTGAAAAA----AAAACTA-A-TATGG-AATTTT------ACAT-G---AT-CTA-AGT-GAA--TCAA----T-GCAGA---TTTTAAACT-TATTATGA-AGAAGT-AAAAAATA--AGTAAAAG-ATATTTAATAAG-----TCGAATTA--T-TAG-ATTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTGCAGTCATTGT-T-TGCATAATTTTGA--AATTAGCAATCAA-TA-GGTAT--GTCTTG-ATGAAGGAATTATATAGTAGCCTT--CTATGTACTGAGATACAGATCA-GGTTATTTTGGAT-TGTTTGTCACTCTTGTC-TCCCA--TGTTTCCTCA-AGAAAT-AGAATC-TTGA-CTCCAT-CATGA-CAA-TCTAT-ATCGAATGCCA-TTTTCAAATGATGCAGACAAATAG-TCCTGAG-TATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATG-AA--TTCTCCTTACTTAGGGCTTT-TGA--CT-AAAACATCAAAAACAAAGTTCTGTAAATAA-CTAGAATgctg
gi|4 : AAATTAT-TTATAA-AGAAGT-AAAAAATA--GGTAAAGA-AAATGT--CAAATA-AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACACCAGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-AT---GGAATTCTAAAGTGGCCTT--TTATGTACTGAGATACAGATGAT-ATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTCTTTCCTCA-G-AAATGAGAATC-TTGA-TTCCAT-CA------------------AATGCCA-GTTTCAAATGATGCAGACAAAGAG-TCCTGAGTT-TGCAATTTTCTCTGGCATG-TGGCTGAAGAGACATGGAA--TTCTCCTGACTTAATTTTGTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAAT-ATCTAGAGTCTTCAAGAGATGTTA
gi|5 : gcTGGGGTGGC-TTCC-CA---AAGTGAACAAA-AACAAACAA-GTTTGTATACACATATT--CCATAAAA-T---T-ATATACAC-AA-CACAG-ATA-CTACATGTTCAATATTCATCTTTG-GCT-GGGAC-AT-TCG---GTCGTT-ACATCCAATGC-ATACTGT-T----AT----GT-TGGTCCACGTAGA-------ACACTTCCAATTCATACAATCGTCAACAGCGG-A-CCTATATACA--CAATAAATACACATAAAATTACACACA---ATACA-AGA--TATGACTCACATA-GTCTGTTCATATTTGA-TTACGG--GGGAACTAAT-CAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
gi|6 : GGGTGGC-TTCC-CA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTC-----AT-T---TTATATACAC-CA-CATAG-ATAA-TACATGTCGAATATTCATCTT----CTCAGG-T-AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCAATTGATATAAACATCAAC---GGGA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACAC-GTGGCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaatg
gi|7 : cGGGTGGC-TTCCACA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTC-----AT-T---TTATATACAC-CA-CATAG-ATAA-TACATGT-CGATATTCATCTT----CTCAGG-T-AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCA-TTGATATAAACATCAAC---GGGA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACACAGT-GCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaa
gi|8 : cT-G---A-ACTACAGTCAAACTTCAT----TTGCAGG-ATTTTAAACTCATCTTATAA-AGAAGTCAAACAA-ATCGGTAAAGACAAAT----AAAGTAGAGTCGAATTATTC-TAG-GTTGCAACTTTTAACATGTACATCACGAAACACTGCTGGG---TAACATAACATTTG-AGTCATTGTCT-TGCATAA--TTGC--AATCAGC-ATCGACTAGGGTATGAGCTATG-A-GAAtaaa
gi|9 : catgGTGGT-TTCC-CATTTA--T-AACAAACA-CAAACAA-GTTCATATACAC--ATT--C-----ACTT---T-AAATACAC-AATCACAG-AT-ACTACA--------------CTTTTGGCTCGGG-T-AT-TC------------------------------------GTTG--GT-----CCACGTAGAACACAACACACT-CCCTTTGCTACAGTCATTAACAATGGAA-CCT
Alignments
lowQualScore : 11111111111111111 11 111 1 111 1 1 1 1 1 1 33 66666666666666666 33333 111 1 22 2222222 222 111 333333 22 1 1 22 11111 111 222222 222 111 111111 111 1 11111 1111 222 11 111 22 11 111 1 1 1 1 22222222222222 1 2222 1 11 11 111 11 11 1111 111 2222222222 444444444444 2222222 1111 111 1 11 1 1 22
lowQualScore : 3 0 66666666666666666 11 444 5 0 777 3 0 3 6 7 3 3 7 7 7 6 7 3 3 11 7 6 1 11111111111111111 00000 777 3 7 00 4444444 555 999 7 777777 1 7 00 6 3 3 33 3 66666 111 3 888888 444 0 8 8 111 888888 999 11 6 3 6 6 6 1 8 99999 8 8 0 8 8 8 8 4444 222 22 8 8 8 999 11 11 8 8 8 8 55 1 2 444 3 3 22 2 3 88 444 0 0 0 0 77777777777777 0 3 2 9999 66 0 2 2 3 11 5 44 8 0 0 0 66 3 5 5 000 999 5 4 33 55 2222 77 5 5 5 777 3 0 000 77 5 9999999999 2 6 000000000000 6 1111111 6 3 1 1 6666 8 444 3 3 3 0 0 33 3 0 0 6 6 99 1 6 2 6 22 6
lowQualScore : . . ................. .. ... . . ... . . . . . . . . . . . . . . .. . . . ................. ..... ... . . .. ....... ... ... . ...... . . .. . . . .. . ..... ... . ...... ... . . . ... ...... ... .. . . . . . . . ..... . . . . . . . .... ... .. . . . ... .. .. . . . . .. . . ... . . .. . . .. ... . . . . .............. . . . .... .. . . . . .. . .. . . . . .. . . . ... ... . . .. .. .... .. . . . ... . . ... .. . .......... . . ............ . ....... . . . . .... . ... . . . . . .. . . . . . .. . . . . .. .
lowQualScore : 2 8 88888888888888888 00 000 0 0 555 2 0 3 7 3 3 3 3 3 3 7 3 3 3 77 3 7 0 33333333333333333 77777 777 3 3 00 3333333 777 000 3 333333 0 3 77 7 3 3 88 2 55555 000 2 888888 666 8 0 0 888 222222 222 88 7 3 7 7 7 7 0 00000 2 0 8 0 0 0 0 8888 000 22 0 0 0 666 00 66 0 0 0 0 88 0 5 555 2 2 00 5 2 55 888 0 0 0 0 22222222222222 0 2 5 5555 88 0 5 5 8 00 6 44 0 8 8 6 55 2 7 7 000 444 7 3 11 77 1111 99 7 7 7 333 6 7 666 99 7 2222222222 2 7 111111111111 7 7777777 7 5 0 4 4444 0 888 2 2 2 2 0 88 2 0 0 7 7 22 5 7 5 7 22 7
consensus : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAA-TGAAA--------TAAAAATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCTGG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----T--TATATACAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
Reference ( family-3264 ) : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAATTAAAA--------GAAAAATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCTGG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----T--TATATACAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGT--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
gi|1 : TAAGGGGAT-CGACCCTCTGCTCTAAAT--CACCAAAATTTT----------AAATATTCTACATGGATTTATCCATCATCAACAATAGGCTT---AGATTC-AA-T-GGAAAAT-GTTGTGAGGTATTGAAGCGGTGCT-AC-TTTT-C-CAAATGAAAATTTTTTTTGTCTAATCAAGATAT-AAGAAA-TTTGACACACTGAATAGAAAGAT-AA-AAATG-ATTATCA-ATCATAATTGAAAACATAAAGGAAAAATAT-----TATACA-TTCAAGAATAAAATTTAGTGCT-CAAGTACGTAA-GAATTAATATTTTAAAAAATTAGTAGTGAAGCGTGTAGCCTTTTTTTGGTCAGAATTTCTAT--GAAATCTTTGGGTGTGAAAAATTGCGTCCAGCAGCAAGAGTTATCTTGTCT-TAAAA--AA---TTGAAAA----GAAACGACA-TATGGAAATTTT------ACATGTTGATACTA-GAT-AA---TCATT-G----CAGA-ATCTTTAAA-TTATATTATAACAGAAGT-AAA-ATA-AGGTAAAGA-AAATATAATAAGTA-AGGCGAATTATTTGTAGAGTT--AATTTGTAA-TTGTACATCAGAAA----TGCTGGCGTTAAAAGAAA-TTTG-AGTAATTGT-TGTGCATA--TTTGATGAATGAGCA-TCAA-TA-GGTACG-GTCATGGATTGAGGAATTATATAGTG-CCTTGATCATGT-CTGAGATACAGATGATAATTTTTTGGGATCTGTTTGTCACTCTTGCCTTCCCA---GTATTCTCA-A-AAAT-CCAATCGTTGAATTCCATGCAGGAACAACTCT-T-ATCGAATGCCACGTTTCAA-T-ATGTAGACAAG-AGGTCCTGAGTATGCAATTTTCTCTGACAAGATGG-TAAAGA-ACATGAAAGCTTCTCCTGACGTATGGTT--CTGAACCT-AAAACATCAAAA-CAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGAGGTGGCGTTTC-CA---AAGTGAACACA-A-CAAACAA-GTTTATAT-CACA-ATT--CAC-----T--TATATACACAAA-CACAGAATAACTACATGTTCAATATC--TCTTTTTGCTTGAGCTGATCTCG---GT---TAACATCCAATGCAATATTGCATACTGATTAGTGT-TGGTCCACGT-GA-------ACACT-CCAATTCATACAATCGTCAACGGCGGGACCCTACACACACGCATAAAATCCAC-TTAGGT---ACCCATTTTTATACAAGTTTATGAC-CACATAGGTCCGC-CATATTTGACTTAC-GCTGGAAACTAATGCAATTACAC-TATGCAGCGGCCTCTATATCTTAAACTTGGTAC
gi|10 : TGGC-TTCC-CA---AAGTGATCAAA-A-CACACAA-GTTTATATACACATATT--CACT----TTATATATACAC-AC-CACAG-AT-ACTATATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCGTTCGT---T-GCATCCCATTC-ATAatc
gi|11 : AAAA--AAAATCTGAAAAAAAAGAAACTA-AATATGGATTTTTTTTTTTAACATGTG-ATACTA-AGT-AAA--TCATT-ATGTACAGATATTT---AA-TTAT-TTAGAA-AGAAGT-AAA-AAACAGGTAAAG
gi|12 : aCTGGGGTGAC-TTCC-GA---AAGTGAACAAA---CAAACAATATTTATATACACT-ATA--TACT----T--TATATACAC-AA-C-CAG---AACTACATGTTCAATATTCATCTTTTGGCTCAGGT--AT-TCG---
gi|13 : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAA----AAATTTA---AAATATTCTACCTGCATTT--CCATCATCAACAATAGCATTATAAGATTCAAA-T-GGAAAATAGTT-TGAGttcgt
gi|14 : TGCTCTAAATTTCAC---AATTTT---TTTTAAAAAACATTCTAAATGGGTTT--CCATCATCAACAATAGCATT---AGA
gi|15 : ggggatTATTTGA-TTAC-G--GGGAACTAATGCGATTACAC-GTGGCAGC-GCTGGTTTA-CTTTAACTT-GTACc
gi|16 : GAAA--TTCTCCTGACTTAGGGTTTTCTGAGCCTAAAAACATCAAAAACA---TACTGTAtaaat
gi|17 : A-TTAC-G--GGGAACTAATGCAATTACAC-GTG---------GCTTTA-CTTTAACTT-GTACc
gi|18 : ----GTTA--GGATGGTCCACGTAGA-------ACACT-CCAATTCATACAAtaga
gi|2 : AAGGGATTCGACCCTCTGCTCTAAATTTCACCAA--TTTT---TTTT---TAATATTCTACATGGATTT--C-ATCATCAACAATAGCATT---A-ATTG-AA-AAGGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTACGTTTT-CTCAAATGAAT----TTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGATCAATAAATTTATTATCACAGCATAA---AAA--------TAAAAATATGA-GGTATACA-T-CAA-AATAATATTTAGTGTC----ATACATAATAAATTAATATT--AAAAAAC--ATAGTGAAGCG-GT-GC--TTTTTTGATCATAATTTCTCTTTGTAATCTATGGTTGTGAAAAATTGCGTCCAGCATCAA-AGTTATCTT-TCTTCAAAAC-AAAATCTGAAAAAA--GAAATTA-A-TATAGAAATTTG------ACATTG--ATACTA-AGT-AAA--TCATT-G----CAGA---TTTTAAA-TTAT-T-ATAA-AG---T-AAA-AA-TAGGTAAAGA-AAATGTAAGAA----AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCTGAAAA---TGCTGG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GATACG-GTCATG-ATGAAGGAATTCTATAGTGGCCTT--GTATGTACTG-GATACAGATGA-GATTATTTTGGATCTGTCTGTCACTCTTGCCTTCCCATTTGTTTCCTCAGA-AAAG-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-CAATCGAATGCCA-GTTTCAAATGATGCAGACAAA--------GAG-------TTTTCTACGACAAG-TAGCTGAAGAGACATGAAA--TTTTCCTGACTTAGGGTTTTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAA-AATCTAGAGTCTTCAAGTGATGTTACAT
gi|3 : GGGGATTCGACCCTCTGCTCTAGATTTCACCAT--TTTT---TTTT---AAATATTCTACATGGATTT--TCATCATCAGCAATAGCATT---ACATTC-AAAT-GGAAAATAGTT-TGAGGTAT-GAAGCGGT-CTTCC-TTTTTCTGAAATGAATATTTT----GTCTAATTATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAA--AT-ATCACACCAT---TAAAT--------TAAAAATATGACG-TATACAAT-CAA-AATAAT-TTTAGTGTCACAAATA-------AATTAATAT---AAATAAC--ATAGTGAAGTGTGC-----TTATTTAATAAAAATT-CTCTT-CTAACCCATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAAACAAAATCTGAAAAAA---AAACTA-A-TATGG-AATTTT------ACATG---AT-CTA-AGT-GAA--TCAAT-G----CAGA---TTTTAAACTTA--TTATGA-AGAAGT-AAA-AAATAAGTAAAAG-ATATTTAA----TA-AGTCGAATTA--T-TAG-ATTG-AATTTGTAA-ATGTACATCAGAAAA---TGCTGG---TAAAAGAAAATTTGCAGTCATTGT-T-TGCATAATTTTGA--AATTAGCAATCAA-TA-GGTAT--GTCTTG-ATGAAGGAATTATATAGTAGCCTT--CTATGTACTGAGATACAGATCA-GGTTATTTTGGAT-TGTTTGTCACTCTTGTC-TCCCA--TGTTTCCTCA-AGAAAT-AGAATC-TTGA-CTCCAT-CATGA-CAA-TCTAT-ATCGAATGCCA-TTTTCAAATGATGCAGACAAATAG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATG-AA--TTCTCCTTACTTAGGGCTTT-TGA--CT-AAAACATCAAAAACAAAGTTCTGTAAATAA-CTAGAATgctg
gi|4 : AAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGT--CAAATA-AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACACCAGAAAA---TGCTGG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-AT---GGAATTCTAAAGTGGCCTT--TTATGTACTGAGATACAGATGAT-ATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTCTTTCCTCA-G-AAATGAGAATC-TTGA-TTCCAT-CA------------------AATGCCA-GTTTCAAATGATGCAGACAAAGAG-TCCTGAGTTTGCAATTTTCTCTGGCATG-TGGCTGAAGAGACATGGAA--TTCTCCTGACTTAATTTTGTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAAT-ATCTAGAGTCTTCAAGAGATGTTA
gi|5 : gcTGGGGTGGC-TTCC-CA---AAGTGAACAAA-AACAAACAA-GTTTGTATACACATATT--CCATAAAAT--TATATACAC-AA-CACAG-ATA-CTACATGTTCAATATTCATCTTT-GGCTGGGAC--AT-TCG---GTCGTT-ACATCCAATGC-ATACTGT-T----AT----GT-TGGTCCACGTAGA-------ACACTTCCAATTCATACAATCGTCAACAGCGG-A-CCTATATACA--CAATAAATACACATAAAATTACACACA---ATACA-AGA--TATGACTCACATA-GTCTGTTCATATTTGA-TTACGG--GGGAACTAAT-CAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
gi|6 : GGGTGGC-TTCC-CA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----T--TATATACAC-CA-CATAG-ATAA-TACATGTCGAATATTCATCTT----CTCAGGT--AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCAATTGATATAAACATCAACGG---GA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACAC-GTGGCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaatg
gi|7 : cGGGTGGC-TTCCACA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----T--TATATACAC-CA-CATAG-ATAA-TACATGT-CGATATTCATCTT----CTCAGGT--AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCA-TTGATATAAACATCAACGG---GA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACACAGT-GCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaa
gi|8 : cCATGT--GAACTACAGTCAAACTTCATTTG----CAGG-ATTTTAAAC-TCATCTTATAA-AGAAGTCAAACAAATCGGTAAAGACAAAT----AAAGTAGAGTCGAATTATTC-TAG-GTTGCAACTTTTAACATGTACATCACGAAACACTGCTGGG--TAACATAACATTTG-AGTCATTGTCT-TGCATAA--TTGC--AATCAGC-ATCGACTAGGGTATGAGCTATG-A-GAAtaaa
gi|9 : GTGGT-TTCC-CATTTA--T-AACAAACA-CAAACAA-GTTCATATACAC--ATT--CACT----T--TAAATACAC-AATCACAG-AT-ACTACA--------------CTTTTGGCTCGGGT--AT-TC------------------------------------GTTG--GT-----CCACGTAGAACACAACACACT-CCCTTTGCTACAGTCATTAACAATGGAA-CCT
Alignments
lowQualScore : 11111111111111111 11 111 1 111 1 1 1 1 1 1 33 33333333333 33333 33333 111 1 22 2222222 222 111 333333 22 1 1 22 11111 111 222222 222 111 111111 111 1 11111 1111 111 11 111 22 11 111 1 1 1 1 22222222222222 1 2222 1 11 11 111 11 11 1111 111 2222222222 444444444444 2222222 1111 111 1 11 1 1 22
lowQualScore : 3 0 66666666666666666 11 444 5 0 777 3 0 3 6 7 3 3 7 7 7 6 7 3 3 11 7 6 1 55555555555 33333 00000 777 3 7 00 4444444 555 999 7 777777 1 7 00 6 3 3 33 3 66666 111 3 888888 444 0 8 8 111 888888 999 11 6 3 6 6 6 1 8 99999 8 8 0 8 8 8 8 4444 8 444 22 8 8 8 999 11 11 8 8 8 8 55 1 2 444 3 3 22 2 3 88 444 0 0 0 0 77777777777777 0 3 2 9999 66 0 2 2 3 11 5 44 8 0 0 0 66 3 5 5 000 999 5 4 33 55 2222 77 5 5 5 99 3 0 000 77 5 9999999999 2 6 000000000000 6 1111111 6 3 1 1 6666 8 444 3 3 3 0 0 33 3 0 0 6 6 99 1 6 2 6 22 6
lowQualScore : . . ................. .. ... . . ... . . . . . . . . . . . . . . .. . . . ........... ..... ..... ... . . .. ....... ... ... . ...... . . .. . . . .. . ..... ... . ...... ... . . . ... ...... ... .. . . . . . . . ..... . . . . . . . .... . ... .. . . . ... .. .. . . . . .. . . ... . . .. . . .. ... . . . . .............. . . . .... .. . . . . .. . .. . . . . .. . . . ... ... . . .. .. .... .. . . . .. . . ... .. . .......... . . ............ . ....... . . . . .... . ... . . . . . .. . . . . . .. . . . . .. .
lowQualScore : 2 8 88888888888888888 00 000 0 0 555 2 0 3 7 3 3 3 3 3 3 7 3 3 3 77 3 7 0 77777777777 33333 77777 777 3 3 00 3333333 777 000 3 333333 0 3 77 7 3 3 88 2 55555 000 2 888888 666 8 0 0 888 222222 222 88 7 3 7 7 7 7 0 00000 2 0 8 0 0 0 0 8888 0 000 22 0 0 0 666 00 66 0 0 0 0 88 0 5 555 2 2 00 5 2 55 888 0 0 0 0 22222222222222 0 2 5 5555 88 0 5 5 8 00 6 44 0 8 8 6 55 2 7 7 000 444 7 3 11 77 1111 99 7 7 7 33 6 7 666 99 7 2222222222 2 7 111111111111 7 7777777 7 5 0 4 4444 0 888 2 2 2 2 0 88 2 0 0 7 7 22 5 7 5 7 22 7
consensus : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
Reference ( family-3264 ) : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
gi|1 : TAAGGGGAT-CGACCCTCTGCTCTAAAT--CACCAAAATTTT----------AAATATTCTACATGGATTTATCCATCATCAACAATAGGCTT---AGATTC-AA-T-GGAAAAT-GTTGTGAGGTATTGAAGCGGTGCT-AC-TTTT-C-CAAATGAAAATTTTTTTTGTCTAATCAAGATAT-AAGAAA-TTTGACACACTGAATAGAAAGAT-AA-AAATG-ATTATCA-ATCATAATTGAAAACATAAAGGAAAAATAT-----TATACA-TTCAAGAATAAAATTTAGTGCT-CAAGTACGTAA-GAATTAATATTTTAAAAAATTAGTAGTGAAGCGTGTAGCCTTTTTTTGGTCAGAATTTCTAT--GAAATCTTTGGGTGTGAAAAATTGCGTCCAGCAGCAAGAGTTATCTTGTCT-TAAAA--AA---TTGAAAA----GAAACGACA-TATGGAAATTTT------ACATGTTGATACTA-GAT-AA---TCATT-G----CAGA-ATCTTTAAA-TTATATTATAACAGAAGT-AAA-ATA-AGGTAAAGA-AAATATAATAAGTA-AGGCGAATTATTTGTAGAGTT--AATTTGTAA-TTGTACATCAGAAA----TGCT-GGCGTTAAAAGAAA-TTTG-AGTAATTGT-TGTGCATA--TTTGATGAATGAGCA-TCAA-TA-GGTACG-GTCATGGATTGAGGAATTATATAGTG-CCTTGATCATGT-CTGAGATACAGATGATAATTTTTTGGGATCTGTTTGTCACTCTTGCCTTCCCA---GTATTCTCA-A-AAAT-CCAATCGTTGAATTCCATGCAGGAACAACTCT-T-ATCGAATGCCACGTTTCAA-T-ATGTAGACAAG-AGGTCCTGAGTATGCAATTTTCTCTGACAAGATGG-TAAAGA-ACATGAAAGCTTCTCCTGACGTATGGTT--CTGAACCT-AAAACATCAAAA-CAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGAGGTGGCGTTTC-CA---AAGTGAACACA-A-CAAACAA-GTTTATAT-CACA-ATT--CAC-----TTATATA--CACAAA-CACAGAATAACTACATGTTCAATATC--TCTTTTTGCTTGAGCTGATCTCG---GT---TAACATCCAATGCAATATTGCATACTGATTAGTGT-TGGTCCACGT-GA-------ACACT-CCAATTCATACAATCGTCAACGGCGGGACCCTACACACACGCATAAAATCCAC-TTAGGT---ACCCATTTTTATACAAGTTTATGAC-CACATAGGTCCGC-CATATTTGACTTAC-GCTGGAAACTAATGCAATTACAC-TATGCAGCGGCCTCTATATCTTAAACTTGGTAC
gi|10 : TGGC-TTCC-CA---AAGTGATCAAA-A-CACACAA-GTTTATATACACATATT--CACT----TTATATATACAC-AC-CACAG-ATA-CTATATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCGTTCGT---T-GCATCCCATTC-ATAatc
gi|11 : AAAA--AAAATCTGAAAAAAAAGAAACTA-AATATGGATTTTTTTTTTTAACATGTG-ATACTA-AGT-AAA--TCATT-ATGTACAGATATTT---AA-TTAT-TTAGAA-AGAAGT-AAA-AAACAGGTAAAG
gi|12 : aCTGGGGTGAC-TTCC-GA---AAGTGAACAAA---CAAACAATATTTATATACACT-ATA--TACT----TTATATA--CAC-AA-C-CAG---AACTACATGTTCAATATTCATCTTTTGGCTCAGGT--AT-TCG---
gi|13 : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAA----AAATTTA---AAATATTCTACCTGCATTT--CCATCATCAACAATAGCATTATAAGATTCAAA-T-GGAAAATAGTT-TGAGttcgt
gi|14 : TGCTCTAAATTTCAC---AATTTT---TTTTAAAAAACATTCTAAATGGGTTT--CCATCATCAACAATAGCATT---AGA
gi|15 : ggggatTATTTGA-TTAC-G--GGGAACTAATGCGATTACAC-GTGGCAGC-GCTGGTTTA-CTTTAACTT-GTACc
gi|16 : GAAA--TTCTCCTGACTTAGGGTTTTCTGAGCCTAAAAACATCAAAAACA---TACTGTAtaaat
gi|17 : A-TTAC-G--GGGAACTAATGCAATTACAC-GTG---------GCTTTA-CTTTAACTT-GTACc
gi|18 : ----GTTA--GGATGGTCCACGTAGA-------ACACT-CCAATTCATACAAtaga
gi|2 : AAGGGATTCGACCCTCTGCTCTAAATTTCACCAA--TTTT---TTTT---TAATATTCTACATGGATTT--C-ATCATCAACAATAGCATT---A-ATTG-AA-AAGGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTACGTTTT-CTCAAATGAAT----TTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGATCAATAAATTTATTATCACAGCATAA---AAA---TAAA-----AATATGA-GGTATACA-T-CAA-AATAATATTTAGTGTC----ATACATAATAAATTAATATT--AAAAAAC--ATAGTGAAGCG-GT-GC--TTTTTTGATCATAATTTCTCTTTGTAATCTATGGTTGTGAAAAATTGCGTCCAGCATCAA-AGTTATCTT-TCTTCAAAAC-AAAATCTGAAAAAA--GAAATTA-A-TATAGAAATTTG------ACATTG--ATACTA-AGT-AAA--TCATT-G----CAGA---TTTTAAA-TTAT-T-ATAA-AG---T-AAA-AA-TAGGTAAAGA-AAATGTAAGAA----AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCTGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GATACG-GTCATG-ATGAAGGAATTCTATAGTGGCCTT--GTATGTACTG-GATACAGATGA-GATTATTTTGGATCTGTCTGTCACTCTTGCCTTCCCATTTGTTTCCTCAGA-AAAG-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-CAATCGAATGCCA-GTTTCAAATGATGCAGACAAA--------GAG-------TTTTCTACGACAAG-TAGCTGAAGAGACATGAAA--TTTTCCTGACTTAGGGTTTTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAA-AATCTAGAGTCTTCAAGTGATGTTACAT
gi|3 : GGGGATTCGACCCTCTGCTCTAGATTTCACCAT--TTTT---TTTT---AAATATTCTACATGGATTT--TCATCATCAGCAATAGCATT---ACATTC-AAAT-GGAAAATAGTT-TGAGGTAT-GAAGCGGT-CTTCC-TTTTTCTGAAATGAATATTTT----GTCTAATTATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAA--AT-ATCACACCAT--T-AAAT---TAAA-----AATATGACG-TATACAAT-CAA-AATAAT-TTTAGTGTCACAAATA-------AATTAATAT---AAATAAC--ATAGTGAAGTGTGC-----TTATTTAATAAAAATT-CTCTT-CTAACCCATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAAACAAAATCTGAAAAAA---AAACTA-A-TATGG-AATTTT------ACATG---AT-CTA-AGT-GAA--TCAAT-G----CAGA---TTTTAAACTTA--TTATGA-AGAAGT-AAA-AAATAAGTAAAAG-ATATTTAA----TA-AGTCGAATTA--T-TAG-ATTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTGCAGTCATTGT-T-TGCATAATTTTGA--AATTAGCAATCAA-TA-GGTAT--GTCTTG-ATGAAGGAATTATATAGTAGCCTT--CTATGTACTGAGATACAGATCA-GGTTATTTTGGAT-TGTTTGTCACTCTTGTC-TCCCA--TGTTTCCTCA-AGAAAT-AGAATC-TTGA-CTCCAT-CATGA-CAA-TCTAT-ATCGAATGCCA-TTTTCAAATGATGCAGACAAATAG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATG-AA--TTCTCCTTACTTAGGGCTTT-TGA--CT-AAAACATCAAAAACAAAGTTCTGTAAATAA-CTAGAATgctg
gi|4 : AAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGT--CAAATA-AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACACCAGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-AT---GGAATTCTAAAGTGGCCTT--TTATGTACTGAGATACAGATGAT-ATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTCTTTCCTCA-G-AAATGAGAATC-TTGA-TTCCAT-CA------------------AATGCCA-GTTTCAAATGATGCAGACAAAGAG-TCCTGAGTTTGCAATTTTCTCTGGCATG-TGGCTGAAGAGACATGGAA--TTCTCCTGACTTAATTTTGTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAAT-ATCTAGAGTCTTCAAGAGATGTTA
gi|5 : gcTGGGGTGGC-TTCC-CA---AAGTGAACAAA-AACAAACAA-GTTTGTATACACATATT--CCATAAAATTATATA--CAC-AA-CACAG-ATA-CTACATGTTCAATATTCATCTTT-GGCTGGGAC--AT-TCG---GTCGTT-ACATCCAATGC-ATACTGT-T----AT----GT-TGGTCCACGTAGA-------ACACTTCCAATTCATACAATCGTCAACAGCGG-A-CCTATATACA--CAATAAATACACATAAAATTACACACA---ATACA-AGA--TATGACTCACATA-GTCTGTTCATATTTGA-TTACGG--GGGAACTAAT-CAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
gi|6 : GGGTGGC-TTCC-CA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----TTATATA--CAC-CA-CATAG-ATAA-TACATGTCGAATATTCATCTT----CTCAGGT--AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCAATTGATATAAACATCAACGG---GA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACAC-GTGGCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaatg
gi|7 : cGGGTGGC-TTCCACA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----TTATATA--CAC-CA-CATAG-ATAA-TACATGT-CGATATTCATCTT----CTCAGGT--AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCA-TTGATATAAACATCAACGG---GA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACACAGT-GCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaa
gi|8 : cCATGT--GAACTACAGTCAAACTTCATTTG----CAGG-ATTTTAAAC-TCATCTTATAA-AGAAGTCAAACAAATCGGTAAAGACAAAT----AAAGTAGAGTCGAATTATTC-TAG-GTTGCAACTTTTAACATGTACATCACGAAACACTGCTGGG---TAACATAACATTTG-AGTCATTGTCT-TGCATAA--TTGC--AATCAGC-ATCGACTAGGGTATGAGCTATG-A-GAAtaaa
gi|9 : GTGGT-TTCC-CATTTA--T-AACAAACA-CAAACAA-GTTCATATACAC--ATT--CACT----TTAAATA--CAC-AATCACAG-AT-ACTACA--------------CTTTTGGCTCGGGT--AT-TC------------------------------------GTTG--GT-----CCACGTAGAACACAACACACT-CCCTTTGCTACAGTCATTAACAATGGAA-CCT
Alignments
lowQualScore : 11111111111111111 11 111 1 111 1 1 1 1 1 1 33 33333333333 33333 33333 111 1 22 2222222 222 111 333333 22 1 1 22 11111 111 222222 222 111 111111 111 1 11111 1111 111 11 111 22 11 111 1 1 1 1 22222222222222 1 2222 1 11 11 111 11 11 1111 111 2222222222 444444444444 2222222 1111 111 1 11 1 1 22
lowQualScore : 3 0 66666666666666666 11 444 5 0 777 3 0 3 6 7 3 3 7 7 7 6 7 3 3 11 7 6 1 55555555555 33333 00000 777 3 7 00 4444444 555 999 7 777777 1 7 00 6 3 3 33 3 66666 111 3 888888 444 0 8 8 111 888888 999 11 6 3 6 6 6 1 8 99999 8 8 0 8 8 8 8 4444 8 444 22 8 8 8 999 11 11 8 8 8 8 55 1 2 444 3 3 22 2 3 88 444 0 0 0 0 77777777777777 0 3 2 9999 66 0 2 2 3 11 5 44 8 0 0 0 66 3 5 5 000 999 5 4 33 55 2222 77 5 5 5 99 3 0 000 77 5 9999999999 2 6 000000000000 6 1111111 6 3 1 1 6666 8 444 3 3 3 0 0 33 3 0 0 6 6 99 1 6 2 6 22 6
lowQualScore : . . ................. .. ... . . ... . . . . . . . . . . . . . . .. . . . ........... ..... ..... ... . . .. ....... ... ... . ...... . . .. . . . .. . ..... ... . ...... ... . . . ... ...... ... .. . . . . . . . ..... . . . . . . . .... . ... .. . . . ... .. .. . . . . .. . . ... . . .. . . .. ... . . . . .............. . . . .... .. . . . . .. . .. . . . . .. . . . ... ... . . .. .. .... .. . . . .. . . ... .. . .......... . . ............ . ....... . . . . .... . ... . . . . . .. . . . . . .. . . . . .. .
lowQualScore : 2 8 88888888888888888 00 000 0 0 555 2 0 3 7 3 3 3 3 3 3 7 3 3 3 77 3 7 0 77777777777 33333 77777 777 3 3 00 3333333 777 000 3 333333 0 3 77 7 3 3 88 2 55555 000 2 888888 666 8 0 0 888 222222 222 88 7 3 7 7 7 7 0 00000 2 0 8 0 0 0 0 8888 0 000 22 0 0 0 666 00 66 0 0 0 0 88 0 5 555 2 2 00 5 2 55 888 0 0 0 0 22222222222222 0 2 5 5555 88 0 5 5 8 00 6 44 0 8 8 6 55 2 7 7 000 444 7 3 11 77 1111 99 7 7 7 33 6 7 666 99 7 2222222222 2 7 111111111111 7 7777777 7 5 0 4 4444 0 888 2 2 2 2 0 88 2 0 0 7 7 22 5 7 5 7 22 7
consensus : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
Reference ( family-3264 ) : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
gi|1 : TAAGGGGAT-CGACCCTCTGCTCTAAAT--CACCAAAATTTT----------AAATATTCTACATGGATTTATCCATCATCAACAATAGGCTT---AGATTC-AA-T-GGAAAAT-GTTGTGAGGTATTGAAGCGGTGCT-AC-TTTT-C-CAAATGAAAATTTTTTTTGTCTAATCAAGATAT-AAGAAA-TTTGACACACTGAATAGAAAGAT-AA-AAATG-ATTATCA-ATCATAATTGAAAACATAAAGGAAAAATAT-----TATACA-TTCAAGAATAAAATTTAGTGCT-CAAGTACGTAA-GAATTAATATTTTAAAAAATTAGTAGTGAAGCGTGTAGCCTTTTTTTGGTCAGAATTTCTAT--GAAATCTTTGGGTGTGAAAAATTGCGTCCAGCAGCAAGAGTTATCTTGTCT-TAAAA--AA---TTGAAAA----GAAACGACA-TATGGAAATTTT------ACATGTTGATACTA-GAT-AA---TCATT-G----CAGA-ATCTTTAAA-TTATATTATAACAGAAGT-AAA-ATA-AGGTAAAGA-AAATATAATAAGTA-AGGCGAATTATTTGTAGAGTT--AATTTGTAA-TTGTACATCAGAAA----TGCT-GGCGTTAAAAGAAA-TTTG-AGTAATTGT-TGTGCATA--TTTGATGAATGAGCA-TCAA-TA-GGTACG-GTCATGGATTGAGGAATTATATAGTG-CCTTGATCATGT-CTGAGATACAGATGATAATTTTTTGGGATCTGTTTGTCACTCTTGCCTTCCCA---GTATTCTCA-A-AAAT-CCAATCGTTGAATTCCATGCAGGAACAACTCT-T-ATCGAATGCCACGTTTCAA-T-ATGTAGACAAG-AGGTCCTGAGTATGCAATTTTCTCTGACAAGATGG-TAAAGA-ACATGAAAGCTTCTCCTGACGTATGGTT--CTGAACCT-AAAACATCAAAA-CAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGAGGTGGCGTTTC-CA---AAGTGAACACA-A-CAAACAA-GTTTATAT-CACA-ATT--CAC-----TTATATA--CACAAA-CACAGAATAACTACATGTTCAATATC--TCTTTTTGCTTGAGCTGATCTCG---GT---TAACATCCAATGCAATATTGCATACTGATTAGTGT-TGGTCCACGT-GA-------ACACT-CCAATTCATACAATCGTCAACGGCGGGACCCTACACACACGCATAAAATCCAC-TTAGGT---ACCCATTTTTATACAAGTTTATGAC-CACATAGGTCCGC-CATATTTGACTTAC-GCTGGAAACTAATGCAATTACAC-TATGCAGCGGCCTCTATATCTTAAACTTGGTAC
gi|10 : TGGC-TTCC-CA---AAGTGATCAAA-A-CACACAA-GTTTATATACACATATT--CACT----TTATATATACAC-AC-CACAG-ATA-CTATATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCGTTCGT---T-GCATCCCATTC-ATAatc
gi|11 : AAAA--AAAATCTGAAAAAAAAGAAACTA-AATATGGATTTTTTTTTTTAACATGTG-ATACTA-AGT-AAA--TCATT-ATGTACAGATATTT---AA-TTAT-TTAGAA-AGAAGT-AAA-AAACAGGTAAAG
gi|12 : aCTGGGGTGAC-TTCC-GA---AAGTGAACAAA---CAAACAATATTTATATACACT-ATA--TACT----TTATATA--CAC-AA-C-CAG---AACTACATGTTCAATATTCATCTTTTGGCTCAGGT--AT-TCG---
gi|13 : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAA----AAATTTA---AAATATTCTACCTGCATTT--CCATCATCAACAATAGCATTATAAGATTCAAA-T-GGAAAATAGTT-TGAGttcgt
gi|14 : TGCTCTAAATTTCAC---AATTTT---TTTTAAAAAACATTCTAAATGGGTTT--CCATCATCAACAATAGCATT---AGA
gi|15 : ggggatTATTTGA-TTAC-G--GGGAACTAATGCGATTACAC-GTGGCAGC-GCTGGTTTA-CTTTAACTT-GTACc
gi|16 : GAAA--TTCTCCTGACTTAGGGTTTTCTGAGCCTAAAAACATCAAAAACA---TACTGTAtaaat
gi|17 : A-TTAC-G--GGGAACTAATGCAATTACAC-GTG---------GCTTTA-CTTTAACTT-GTACc
gi|18 : ----GTTA--GGATGGTCCACGTAGA-------ACACT-CCAATTCATACAAtaga
gi|2 : AAGGGATTCGACCCTCTGCTCTAAATTTCACCAA--TTTT---TTTT---TAATATTCTACATGGATTT--C-ATCATCAACAATAGCATT---A-ATTG-AA-AAGGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTACGTTTT-CTCAAATGAAT----TTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGATCAATAAATTTATTATCACAGCATAA---AAA---TAAA-----AATATGA-GGTATACA-T-CAA-AATAATATTTAGTGTC----ATACATAATAAATTAATATT--AAAAAAC--ATAGTGAAGCG-GT-GC--TTTTTTGATCATAATTTCTCTTTGTAATCTATGGTTGTGAAAAATTGCGTCCAGCATCAA-AGTTATCTT-TCTTCAAAAC-AAAATCTGAAAAAA--GAAATTA-A-TATAGAAATTTG------ACATTG--ATACTA-AGT-AAA--TCATT-G----CAGA---TTTTAAA-TTAT-T-ATAA-AG---T-AAA-AA-TAGGTAAAGA-AAATGTAAGAA----AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCTGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GATACG-GTCATG-ATGAAGGAATTCTATAGTGGCCTT--GTATGTACTG-GATACAGATGA-GATTATTTTGGATCTGTCTGTCACTCTTGCCTTCCCATTTGTTTCCTCAGA-AAAG-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-CAATCGAATGCCA-GTTTCAAATGATGCAGACAAA--------GAG-------TTTTCTACGACAAG-TAGCTGAAGAGACATGAAA--TTTTCCTGACTTAGGGTTTTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAA-AATCTAGAGTCTTCAAGTGATGTTACAT
gi|3 : GGGGATTCGACCCTCTGCTCTAGATTTCACCAT--TTTT---TTTT---AAATATTCTACATGGATTT--TCATCATCAGCAATAGCATT---ACATTC-AAAT-GGAAAATAGTT-TGAGGTAT-GAAGCGGT-CTTCC-TTTTTCTGAAATGAATATTTT----GTCTAATTATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAA--AT-ATCACACCAT--T-AAAT---TAAA-----AATATGACG-TATACAAT-CAA-AATAAT-TTTAGTGTCACAAATA-------AATTAATAT---AAATAAC--ATAGTGAAGTGTGC-----TTATTTAATAAAAATT-CTCTT-CTAACCCATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAAACAAAATCTGAAAAAA---AAACTA-A-TATGG-AATTTT------ACATG---AT-CTA-AGT-GAA--TCAAT-G----CAGA---TTTTAAACTTA--TTATGA-AGAAGT-AAA-AAATAAGTAAAAG-ATATTTAA----TA-AGTCGAATTA--T-TAG-ATTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTGCAGTCATTGT-T-TGCATAATTTTGA--AATTAGCAATCAA-TA-GGTAT--GTCTTG-ATGAAGGAATTATATAGTAGCCTT--CTATGTACTGAGATACAGATCA-GGTTATTTTGGAT-TGTTTGTCACTCTTGTC-TCCCA--TGTTTCCTCA-AGAAAT-AGAATC-TTGA-CTCCAT-CATGA-CAA-TCTAT-ATCGAATGCCA-TTTTCAAATGATGCAGACAAATAG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATG-AA--TTCTCCTTACTTAGGGCTTT-TGA--CT-AAAACATCAAAAACAAAGTTCTGTAAATAA-CTAGAATgctg
gi|4 : AAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGT--CAAATA-AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACACCAGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-AT---GGAATTCTAAAGTGGCCTT--TTATGTACTGAGATACAGATGAT-ATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTCTTTCCTCA-G-AAATGAGAATC-TTGA-TTCCAT-CA------------------AATGCCA-GTTTCAAATGATGCAGACAAAGAG-TCCTGAGTTTGCAATTTTCTCTGGCATG-TGGCTGAAGAGACATGGAA--TTCTCCTGACTTAATTTTGTCTG-ACCT-AAAACATCAAAAACAAGTTTCTGTAAAT-ATCTAGAGTCTTCAAGAGATGTTA
gi|5 : gcTGGGGTGGC-TTCC-CA---AAGTGAACAAA-AACAAACAA-GTTTGTATACACATATT--CCATAAAATTATATA--CAC-AA-CACAG-ATA-CTACATGTTCAATATTCATCTTT-GGCTGGGAC--AT-TCG---GTCGTT-ACATCCAATGC-ATACTGT-T----AT----GT-TGGTCCACGTAGA-------ACACTTCCAATTCATACAATCGTCAACAGCGG-A-CCTATATACA--CAATAAATACACATAAAATTACACACA---ATACA-AGA--TATGACTCACATA-GTCTGTTCATATTTGA-TTACGG--GGGAACTAAT-CAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
gi|6 : GGGTGGC-TTCC-CA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----TTATATA--CAC-CA-CATAG-ATAA-TACATGTCGAATATTCATCTT----CTCAGGT--AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCAATTGATATAAACATCAACGG---GA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACAC-GTGGCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaatg
gi|7 : cGGGTGGC-TTCCACA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----TTATATA--CAC-CA-CATAG-ATAA-TACATGT-CGATATTCATCTT----CTCAGGT--AT-TCG----T---T-ACGTCCAATGC-ATACTGTAT----G-----GT-TGATCCACGTAGA-------ACACT-CCA-TTGATATAAACATCAACGG---GA-CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACACAGT-GCAGC-GCTGCTTTAT-TTTAAGTT-GTACtaaa
gi|8 : cCATGT--GAACTACAGTCAAACTTCATTTG----CAGG-ATTTTAAAC-TCATCTTATAA-AGAAGTCAAACAAATCGGTAAAGACAAAT----AAAGTAGAGTCGAATTATTC-TAG-GTTGCAACTTTTAACATGTACATCACGAAACACTGCTGGG---TAACATAACATTTG-AGTCATTGTCT-TGCATAA--TTGC--AATCAGC-ATCGACTAGGGTATGAGCTATG-A-GAAtaaa
gi|9 : GTGGT-TTCC-CATTTA--T-AACAAACA-CAAACAA-GTTCATATACAC--ATT--CACT----TTAAATA--CAC-AATCACAG-AT-ACTACA--------------CTTTTGGCTCGGGT--AT-TC------------------------------------GTTG--GT-----CCACGTAGAACACAACACACT-CCCTTTGCTACAGTCATTAACAATGGAA-CCT
blockSeqs : T AATTTTTTTTAAA . ATA G A AA A . . G T G T T A T G A C T TT T C G AAAAA . GAGG AT . A AC CATAATA T A T TGC T T TT G . T AC A AAAAG AA A TTTTTA TG C C ACT ATGTA TAT TT C C . C C C C GTAAG A G . . C C ACAC G . AA C C . ATT . AA C G A . TG C G G A A G C T TT GA G . . . CGACAATCTCA . A G TAG TA . C G A . T AG A TA T . A TTT AA T C AT TT AAAA TA . T . AC T TTG . . TTCGTT A . GTTG A ACACAAC T A C T TGGA . C A T T . . T . T . G . G A G . C .
blockSeqs : T AAAAAATTTA . . G . AT A . . . T . . T . . G A . . . . C C TAAAT . GACG T . . . . . A . C A . T . . . C A AAG A A . G . . A TG AT TT . . . . . T . TTAA G . . . . . A . . AT . . . AT . AA . . . . TG A G C A A G C T TT AG . . . . TGACAATCTAT . A G GAG TT . C G A . T A . A T . . . CA . C AT TT . . . . . AC T TTG . . GTCGTT A . TAT . . . A C A CGG . A A T T . . T . . . . . A . G . C .
blockSeqs : T ATTTTTTTT . . C . T A . . A AA A . . T . . A G . TA . . . . . T . GTC . . . . . . A . . AA . . . AT . AA . . . . T C G T A . T . . . G . . . . . . A G . . . C G G . T A . T . . . . A . C T . . . . . . C T TTG . . TT G . ATG . . . A G A G . A A T . . . T . . . . . A . G . C .
blockSeqs : TTTTTTTTT . . . . . . A G . . . . . . . T . A . . . . . . A . . AT . . . A . A . . . . G . . G A . . . . A . C A . . . . . . C C TG . . TT G . ATG . . . T G T G . . . . C . G . T .
blockSeqs : . . . . . T . . . A . . A . . . . . . A . . . . . . . . . . . G . . . C . . . T .
blockSeqs : . . . . . . . . . . . . . A . . . .
blockSeqCons : AATTTTTTTT******* ** *** A** *** GTA** A*** *** AN AT* ** AA ** A* N* ** TT******** ATG********* CGG* ** C*
originalCons : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAATTTT---TTTT---AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATGT--ATACTA-AGT-AAA--TCATT-G----CAGA-ATTTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTAANAAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGAACCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-ATAACTACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCG---GT---T-ACGTCCAATGC-ATACTGTAT----GTTA--GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGGGA-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTATCTTTAACTT-GTAC
finalCons : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAATTTTTTTT-------AAATATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACATG---ATACTA-AGT-AAA--TCATT-G----CAGA---TTTTAAA-TTAT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGA-AAATGTA--AAGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAANTTG-AGTCATTGT-T-TGCATAAT-TTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGA-CCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-ATAN-TACATGTTCAATATTCATCTTTTGGCTCGGGC--AT-TCGTT--------ACGTCCAATGC-ATACTGTATG---------GT-TGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGG-A-CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTAC-TTTAACTT-GTAC
Alignments
lowQualScore : 1111 11 111 1 111 1 1 1 1 1 1 33 33333333333 33333 33333 111 1 22 2222222 222 111 333333 22 1 1 22 11111 111 222222 222 111 111111 11 1 222 1111 111 11 111 22 11 111 1 1 1 1 22222222222222 1 2222 1 11 1 111 1 11 1111 111 1111 111111 222222222 2222222 1111111 111 1 11 1 1
lowQualScore : 3 0 77 0 1 4444 11 444 5 0 777 3 0 3 6 7 3 3 7 7 7 6 7 3 3 11 7 6 1 55555555555 33333 00000 777 3 7 00 4444444 555 999 7 777777 1 7 00 6 3 3 33 3 66666 111 3 888888 8 555 11 8 8 111 888888 8 11 6 6 3 6 6 6 1 22 111 8 0 8 8 8 8 4444 8 444 11 8 8 8 999 11 11 8 8 8 8 55 1 2 444 3 3 22 2 3 88 444 0 0 0 0 77777777777777 0 3 2 9999 66 0 2 2 3 11 5 6 8 0 0 0 66 3 5 5 000 999 5 4 1 55 2222 77 5 5 5 5 1 3 0 000 77 2222 5 555555 99 0 6 8 666666666 1111111 6 3 1 1 6666666 444 3 3 3 0 0 33 3 0 0 6 6 99 1 6 2 6 6 6
lowQualScore : . . .. . . .... .. ... . . ... . . . . . . . . . . . . . . .. . . . ........... ..... ..... ... . . .. ....... ... ... . ...... . . .. . . . .. . ..... ... . ...... . ... .. . . ... ...... . .. . . . . . . . .. ... . . . . . . .... . ... .. . . . ... .. .. . . . . .. . . ... . . .. . . .. ... . . . . .............. . . . .... .. . . . . .. . . . . . . .. . . . ... ... . . . .. .... .. . . . . . . . ... .. .... . ...... .. . . . ......... ....... . . . . ....... ... . . . . . .. . . . . . .. . . . . . .
lowQualScore : 2 8 44 8 0 8888 00 000 0 0 555 2 0 3 7 3 3 3 3 3 3 7 3 3 3 77 3 7 0 77777777777 33333 77777 777 3 3 00 3333333 777 000 3 333333 0 3 77 7 3 3 88 2 55555 000 2 888888 0 000 66 0 0 888 222222 0 00 7 7 3 7 7 7 7 22 666 0 8 0 0 0 0 8888 0 000 88 0 0 0 666 00 66 0 0 0 0 88 0 5 555 2 2 00 5 2 55 888 0 0 0 0 22222222222222 0 2 5 5555 88 0 5 5 8 00 6 0 0 8 8 6 55 2 7 7 000 444 7 3 4 77 1111 99 7 7 7 7 0 6 7 666 99 1111 7 000000 33 4 7 0 777777777 7777777 7 5 0 4 2222222 888 2 2 2 2 0 88 2 0 0 7 7 22 5 7 5 7 7 7
consensus : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAATTTTTTTTAAA---TATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACAT-GT--ATACTA-AGT-AAA--TCATT-G----CAG-A--TTTTAAA-TT-AT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGAAAATGTAA--AGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGA-CCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-AT-ACTACATGTTCAATATTCATCTTTTGGCTCGGGC--A----T-TC-G----TT-ACGTCCAATGC-ATACTGT-ATG---------GTTGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGG-A--CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
Reference ( family-3264 ) : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAATTTTTTTTAAA---TATTCTACATGGATTT--CCATCATCAACAATAGCATT---AGATTC-AA-T-GGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTAC-TTTT-CTCAAATGAATATTTTTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAT--ATTATCACANCATAAT-GAAA---TAAA-----AATATGA-G-TATACA-T-CAA-AATAATATTTAGTGTC-CAAATACGTAA-GAATTAATATT--AAAAAAC--GTAGTGAAGCGTGC-GC--TTTTTTGATCANAATTTCTCTT-GTAATCTATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAA--AAAATCTGAAAAAA--GAAACTA-A-TATGGAAATTTT------ACAT-G---ATACTA-AGT-AAA--TCATT-G----CAG-A--TTTTAAA-TT-AT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGAAAATGTAA--AGTA-AGTCGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAANTTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-ATGAAGGAATTNTATAGTGGCCTT--TTATGTACTGAGATACAGATGATGATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTGTTTCCTCA-A-AAAT-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-T-ATCGAATGCCA-GTTTCAAATGATGCAGACAAA-AG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATGAAA--TTCTCCTGACTTAGGGTTTTCTGA-CCT-AAAACATCAAAAACAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGGGGTGGC-TTCC-CA---AAGTGAACAAA-A-CAAACAA-GTTTATATACACA-ATT--CACT----TTATATA--CAC-AA-CACAG-AT-ANTACATGTTCAATATTCATCTTTTGGCTCGGGC--A----T-TC-G----TT-ACGTCCAATGC-ATACTGT-ATG---------GTTGGTCCACGTAGA-------ACACT-CCAATTNATACAATCGTCAACGGCGG-A--CCTACACACA--NAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCGC-CATATTTGA-TTAC-G--GGGAACTAATGCAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
gi|1 : TAAGGGGAT-CGACCCTCTGCTCTAAAT--CACCAAAATTTT---AAA---TATTCTACATGGATTTATCCATCATCAACAATAGGCTT---AGATTC-AA-T-GGAAAAT-GTTGTGAGGTATTGAAGCGGTGCT-AC-TTTT-C-CAAATGAAAATTTTTTTTGTCTAATCAAGATAT-AAGAAA-TTTGACACACTGAATAGAAAGAT-AA-AAATG-ATTATCA-ATCATAATTGAAAACATAAAGGAAAAATAT-----TATACA-TTCAAGAATAAAATTTAGTGCT-CAAGTACGTAA-GAATTAATATTTTAAAAAATTAGTAGTGAAGCGTGTAGCCTTTTTTTGGTCAGAATTTCTAT--GAAATCTTTGGGTGTGAAAAATTGCGTCCAGCAGCAAGAGTTATCTTGTCT-TAAAA--AA---TTGAAAA----GAAACGACA-TATGGAAATTTT------ACAT-GTTGATACTA-GAT-AA---TCATT-G----CAG-AATCTTTAAA-TT-ATATTATAACAGAAGT-AAA-ATA-AGGTAAAGAAAATATAATAAGTA-AGGCGAATTATTTGTAGAGTT--AATTTGTAA-TTGTACATCAGAAA----TGCT-GGCGTTAAAAGAAA-TTTG-AGTAATTGT-TGTGCATA--TTTGATGAATGAGCA-TCAA-TA-GGTACG-GTCATGGATTGAGGAATTATATAGTG-CCTTGATCATGT-CTGAGATACAGATGATAATTTTTTGGGATCTGTTTGTCACTCTTGCCTTCCCA---GTATTCTCA-A-AAAT-CCAATCGTTGAATTCCATGCAGGAACAACTCT-T-ATCGAATGCCACGTTTCAA-T-ATGTAGACAAG-AGGTCCTGAGTATGCAATTTTCTCTGACAAGATGG-TAAAGA-ACATGAAAGCTTCTCCTGACGTATGGTT--CTGAACCT-AAAACATCAAAA-CAAGTTTCTGTAAATAATCTAGAGTCTTCAAGTGATGTTACATTGCGGACTGAGGTGGCGTTTC-CA---AAGTGAACACA-A-CAAACAA-GTTTATAT-CACA-ATT--CAC-----TTATATA--CACAAA-CACAGAATAACTACATGTTCAATATC--TCTTTTTGCTTGAGCTGA----TCTCGG----TTAACATCCAATGCAATATTGC-ATACTGATTAGTGTTGGTCCACGT-GA-------ACACT-CCAATTCATACAATCGTCAACGGCGG-GACCCTACACACACGCATAAAATCCAC-TTAGGT---ACCCATTTTTATACAAGTTTATGAC-CACATAGGTCCGC-CATATTTGACTTAC-GCTGGAAACTAATGCAATTACAC-TATGCAGCGGCCTCTATATCTTAAACTTGGTAC
gi|10 : TGGC-TTCC-CA---AAGTGATCAAA-A-CACACAA-GTTTATATACACATATT--CACT----TTATATATACAC-AC-CACAG-AT-ACTATATGTTCAATATTCATCTTTTGGCTCGGGC--ATTCGT-TC-G----TT-GCATCCCATTC-ATAatc
gi|11 : AAAA--AAAATCTGAAAAAAAAGAAACTA-AATATGGATTTTTTTTTTTAACAT-GTG-ATACTA-AGT-AAA--TCATT-ATGTACAG-A--TATTTAA-TT-AT-TTAGAA-AGAAGT-AAA-AAACAGGTAAAG
gi|12 : aCTGGGGTGAC-TTCC-GA---AAGTGAACAAA---CAAACAATATTTATATACACT-ATA--TACT----TTATATA--CAC-AA-C-CAG-A--ACTACATGTTCAATATTCATCTTTTGGCTCAGGT--A----T-TC-G----TT--CGT
gi|13 : TAAGGGGATTCGACCCTCTGCTCTAAATTTCACCAAAAAAATTTAAAA---TATTCTACCTGCATTT--CCATCATCAACAATAGCATTATAAGATTCAAA-T-GGAAAATAGTT-TGAG
gi|14 : TGCTCTAAATTTCAC--AATTTTTTTTAAAAAACATTCTAAATGGGTTT--CCATCATCAACAATAGCATT---AGA
gi|15 : ggggatTATTTGA-TTAC-G--GGGAACTAATGCGATTACAC-GTGGCAGC-GCTGGTTTA-CTTTAACTT-GTACc
gi|16 : GAAA--TTCTCCTGACTTAGGGTTTTCTGAGCCTAAAAACATCAAAAACA---TACTGTAtaaat
gi|17 : A-TTAC-G--GGGAACTAATGCAATTACAC-GTG---------GCTTTA-CTTTAACTT-GTACc
gi|18 : G---------GATGGTCCACGTAGA-------ACACT-CCAATTCATACAAtaga
gi|2 : gttaAAGGGATTCGACCCTCTGCTCTAAATTTCACCAATTTTTTTTTAA----TATTCTACATGGATTT--C-ATCATCAACAATAGCATT---A-ATTG-AA-AAGGAAAATAGTT-TGAGGTAT-GAAGCGGTGCTTACGTTTT-CTCAAATGAAT----TTTTTGTCTAATCATGATATGAAGAAAATTTGACACACTGAATAGAAAGATCAATAAATTTATTATCACAGCATAA---AAA---TAAA-----AATATGA-GGTATACA-T-CAA-AATAATATTTAGTGTC----ATACATAATAAATTAATATT--AAAAAAC--ATAGTGAAGCG-GT-GC--TTTTTTGATCATAATTTCTCTTTGTAATCTATGGTTGTGAAAAATTGCGTCCAGCATCAA-AGTTATCTT-TCTTCAAAAC-AAAATCTGAAAAAA--GAAATTA-A-TATAGAAATTTG------ACATTG---ATACTA-AGT-AAA--TCATT-G----CAG-A--TTTTAAA-TT-AT-T-ATAA-AG---T-AAA-AA-TAGGTAAAGAAAATGTAA---GAA-AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACATCTGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GATACG-GTCATG-ATGAAGGAATTCTATAGTGGCCTT--GTATGTACTG-GATACAGATGA-GATTATTTTGGATCTGTCTGTCACTCTTGCCTTCCCATTTGTTTCCTCAGA-AAAG-AGAATC-TTGA-TTCCAT-CACGA-CAA-TCT-CAATCGAATGCCA-GTTTCAAATGATGCAGACAAA--------GAG-------TTTTCTACGACAAG-TAGCTGAAGAGACATGAAA--TTTTCCTGACTTAGGGTTTTCTGA-CCT-AAAACATCAAAAACAAGTTTCTGTAAA-AATCTAGAGTCTTCAAGTGATGTTACAT
gi|3 : GGGGATTCGACCCTCTGCTCTAGATTTCACCAT-TTTTTTTTAAA---TATTCTACATGGATTT--TCATCATCAGCAATAGCATT---ACATTC-AAAT-GGAAAATAGTT-TGAGGTAT-GAAGCGGT-CTTCC-TTTTTCTGAAATGAATATTTT----GTCTAATTATGATATGAAGAAAATTTGACACACTGAATAGAAAGAT-AA-AAAA--AT-ATCACACCAT--T-AAAT---TAAA-----AATATGACG-TATACAAT-CAA-AATAAT-TTTAGTGTCACAAATA-------AATTAATAT---AAATAAC--ATAGTGAAGTGTGC-----TTATTTAATAAAAATT-CTCTT-CTAACCCATGGGTGTGAAAAATTGCGTCCAGCATCAAGAGTTATCTT-TCT-CAAAAACAAAATCTGAAAAAA---AAACTA-A-TATGG-AATTTT------ACAT-G---AT-CTA-AGT-GAA--TCAAT-G----CAG-A--TTTTAAACTT-A--TTATGA-AGAAGT-AAA-AAATAAGTAAAAGATATTTAA----TA-AGTCGAATTA--T-TAG-ATTG-AATTTGTAA-ATGTACATCAGAAAA---TGCT-GG---TAAAAGAAAATTTGCAGTCATTGT-T-TGCATAATTTTGA--AATTAGCAATCAA-TA-GGTAT--GTCTTG-ATGAAGGAATTATATAGTAGCCTT--CTATGTACTGAGATACAGATCA-GGTTATTTTGGAT-TGTTTGTCACTCTTGTC-TCCCA--TGTTTCCTCA-AGAAAT-AGAATC-TTGA-CTCCAT-CATGA-CAA-TCTAT-ATCGAATGCCA-TTTTCAAATGATGCAGACAAATAG-TCCTGAGTATGCAATTTTCTCTGACAAG-TGGCTGAAGAGACATG-AA--TTCTCCTTACTTAGGGCTTT-TGA--CT-AAAACATCAAAAACAAAGTTCTGTAAATAA-CTAGAATgctg
gi|4 : AAA-TT-AT-TTATAA-AGAAGT-AAA-AAATAGGTAAAGAAAATGTCA--AATA-AATTGAATTATTT-TAG-GTTG-AATTTGTAA-ATGTACACCAGAAAA---TGCT-GG---TAAAAGAAAAATTG-AGTCATTGT-T-TGCATAA-TTTGA--AATTAGCAATCAA-TA-GGTACG-GTCATG-AT---GGAATTCTAAAGTGGCCTT--TTATGTACTGAGATACAGATGAT-ATTATTTTGGATCTGTTTGTCACTCTTGCCTTCCCATTTCTTTCCTCA-G-AAATGAGAATC-TTGA-TTCCAT-CA------------------AATGCCA-GTTTCAAATGATGCAGACAAAGAG-TCCTGAGTTTGCAATTTTCTCTGGCATG-TGGCTGAAGAGACATGGAA--TTCTCCTGACTTAATTTTGTCTGA-CCT-AAAACATCAAAAACAAGTTTCTGTAAAT-ATCTAGAGTCTTCAAGAGATGTTA
gi|5 : gcTGGGGTGGC-TTCC-CA---AAGTGAACAAA-AACAAACAA-GTTTGTATACACATATT--CCATAAAATTATATA--CAC-AA-CACAG-AT-ACTACATGTTCAATATTCATCTTT-GGCTGGGAC--A----T-TC-GGTCGTT-ACATCCAATGC-ATACTGTTATG----------TTGGTCCACGTAGA-------ACACTTCCAATTCATACAATCGTCAACAGCGG-A--CCTATATACA--CAATAAATACACATAAAATTACACACA---ATACA-AGA--TATGACTCACATA-GTCTGTTCATATTTGA-TTACGG--GGGAACTAAT-CAATTACAC-GTGGCAGC-GCTGCTTTA-CTTTAACTT-GTAC
gi|6 : GGGTGGC-TTCC-CA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----TTATATA--CAC-CA-CATAG-AT-AATACATGTCGAATATTCATCTT----CTCAGGT--A----T-TC-G----TT-ACGTCCAATGC-ATACTGT-ATG---------GTTGATCCACGTAGA-------ACACT-CCAATTGATATAAACATCAACGG--G-A--CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACAC-GTGGCAGC-GCTGCTTTA-TTTTAAGTT-GTACtaaatg
gi|7 : cGGGTGGC-TTCCACA---AAGTGAACAAA-A-TAAACAA-GTTTATACA---A-ATTTTCATT----TTATATA--CAC-CA-CATAG-AT-AATACATGT-CGATATTCATCTT----CTCAGGT--A----T-TC-G----TT-ACGTCCAATGC-ATACTGT-ATG---------GTTGATCCACGTAGA-------ACACT-CCA-TTGATATAAACATCAACGG--G-A--CCTACACACA--AAAAAAATACACATTAAGTTACACACATTCATATA-AAG--TATGACTCACATA-GTCCAC-CATGTCTAA-TTAC-G--GGGAACTAATGCCATTACACAGT-GCAGC-GCTGCTTTA-TTTTAAGTT-GTACtaaa
gi|8 : cT-G---A-ACTACAGTCAAACTTCATTTG----CAGGA--TTTTAAA-CTCATCTTATAA-AGAAGTCAAACAAATCGGTAAAGACAA-ATAA--AGTAGAGTCGAATTATTC-TAG-GTTGCAACTTTTAACATGTACATCACGAAACACTGCTGGG---TAACATAACATTTG-AGTCATTGTCT-TGCATAA--TTGC--AATCAGC-ATCGACTAGGGTATGAGCTATG-A-GAAtaaa
gi|9 : catgGTGGT-TTCC-CATTTA--T-AACAAACA-CAAACAA-GTTCATATACACA--TT--CACT----TTAAATA--CAC-AATCACAG-AT-ACTACA--------------CTTTTGGCTCGGGT--A----T-TC-----------------------------------------GTTGGTCCACGTAGAACACAACACACT-CCCTTTGCTACAGTCATTAACAATGGAA--CCT