lowQualScore : 11111111111111111111111
lowQualScore : 11 2222222222222222 333333333333333333333333333333 666666666666666666666666666666 1111 333333333333333333333333 11 22222222222222222222 44444444444444444444444444444444 1111 44444444444444444 11 2222222222 333333 11 111 33333333333333333333 1111 11 333333333 111 555555555555555555555555 3333333333333333 1111 11 11111 22222 2 2 1 1 3333333 11 2 11 999999999999999 1 11 22222 1 1 222222222 333333 222222 444444444 111 1111 1 4444444444 999999999999999999999999999 222222 111 1 11 1111 2 1 44444444 11 1 1 2 1111 2222222 4 222222 22 00000000000000000000000 444 2 4 222 2 1
lowQualScore : 777 99 00 9999999999999999 55 999999999999999999999999999999 88888888 3 3 66 8888 111111111111111111111111111111 33 888 0 9999 44 55 777777777777777777777777 0 3 3 22 3 3 3 11111111111111111111 5 33 2 2 3 2 2 33 2 00000000000000000000000000000000 99999999 2 2222 2 44 33333333333333333 55 4 33 3333333333 222222 0 00 4 4 4 888 9 333 2 77777777777777777777 4 2222 33 5 222222222 6 6 000 5 0 666666666666666666666666 1111111111111111 0000 5 5 8 99 66 8 00 44444 5 77 5 6 6 6 22222 3 55 3 0 6 3 7 2 5 3333333 88 6 11 333333333333333 6 3 88 55555 0 0 0 888888888 222222 2 3 555555 3 000000000 000 3333 0 333 8888888888 4 000000000000000000000000000 888888 555 0 333 33 6 6 7777 0 0 0 0 22222222 8 33 0 3 8 7 6 0 7 5 7 4444 5555555 0 8 333333 22 55555555555555555555555 666 3 6 0 888 3 3
lowQualScore : ... .. .. ................ .. .............................. ........ . . .. .... .............................. .. ... . .... .. .. ........................ . . . .. . . . .................... . .. . . . . . .. . ................................ ........ . .... . .. ................. .. . .. .......... ...... . .. . . . ... . ... . .................... . .... .. . ......... . . ... . . ........................ ................ .... . . . .. .. . .. ..... . .. . . . . ..... . .. . . . . . . . ....... .. . .. ............... . . .. ..... . . . ......... ...... . . ...... . ......... ... .... . ... .......... . ........................... ...... ... . ... .. . . .... . . . . ........ . .. . . . . . . . . . .... ....... . . ...... .. ....................... ... . . . ... . .
lowQualScore : 888 00 66 4444444444444444 55 999999999999999999999999999999 66666666 6 6 33 5555 333333333333333333333333333333 66 000 7 5555 77 55 111111111111111111111111 2 3 1 55 3 3 3 99999999999999999999 3 77 7 7 1 9 9 99 9 77777777777777777777777777777777 11111111 5 9999 7 44 77777777777777777 55 0 55 8888888888 333333 8 00 4 4 4 888 1 222 6 11111111111111111111 3 1111 66 7 111111111 7 7 000 7 7 333333333333333333333333 7777777777777777 6666 0 1 9 99 11 9 66 33333 7 99 7 7 7 7 00000 8 88 2 0 7 3 3 0 5 0000000 33 7 00 333333333333333 7 3 33 00000 2 0 0 888888888 555555 5 2 888888 2 000000000 222 5555 0 555 2222222222 5 888888888888888888888888888 888888 000 0 555 88 7 7 7777 6 8 2 8 44444444 0 00 8 2 0 3 7 0 1 7 3 2222 8888888 0 0 000000 00 00000000000000000000000 777 7 7 0 000 3 3
consensus : ATACGAAAAAGTCTAG---TTGACC-NTCAAC--TAGTC----------------ATC--AACT-------A--------G---CT----A---GTC---A----ACTA-A-CTATTG-AC----TGAN------TT-AC----C--A--CGTAAA-CAGTTGACCGCTT--GGAGTT----AAATAC-TATT--TTG-----A----A----A------AGCGGTCAA-CTGGTT--TG-C-A-TA----A---A--A--TAA-A-CAGT-TG--AC-CA-TTAAT-TG-ACA--G-CT-------TTTTCAGATACTGTGTG-GTA---TAGT--------TGACCAC-T---AG-TTGA-ATGGCT---AAC---T---CTTTG--AAAAT-T--TCA---G----C-AGTTGT----CCACTAG-AT-GAATA-C-T---TGAT-C-TTAANTGAAA-AA--AGGA-GTT-----GACTACT----GT--TG-AATG---C-TA--TGA-CT---T-CATCAT-TCT-----AGAAG---CTT-AGTGCT--C-CGA-C-------TTA---GA-AAAATTGAG-AGC-TGT--CCACT-AGG--TGAA-----TA-CTTG--A-T-CTT-A-AATG----AAAAAGAGCGTGGTCGCGGCAGCCATGTTTGGACAGGACGGCATTGTC--TT--GTGTGG--ATTGTATTTTTNAAATTTN--AAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCG-AT-ATN--AATC-CAGAAGA---NA-AAAATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TTTC--GTTGAGACT-T---GATGG-GATTCAGG---ATTTGGAGC------CGTC-CNAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAA-CTT-TTT-TCTGTGCCGTTGAACAACCCCGATTGTAGCTTCTTACGGAAG-ACTCGTTTTTGTGGCCAG----ACATATATG------CGTAATGTGCCGAAAT-T------TGAAATACCAGCTAGGACTAGCGCATA-----------TCCACAGGATCAGTCTG-AGTTTCTACTTAG-A-GGT-GT-GTA
Reference ( gi|2 ) : ATACGAAAAAGTCTAG---TTGACC-TTCAAC--TAGTC----------------ATC--AACT-------A--------G---CT----A---GTC---A----ACTA-A-CTATTG-AC----TGAC------TT-AC----C--A--CGTAAAACAGTTGACCACTT--GGAGTT----AAATAC-TATT--TTG-----A----A----A------AGCAGTCAA-CTGGTT--TG-C-A-TA----A---A--A--TAA-A-CAGT-TG--AC-CA-TTAAT-TG-ACA--G-CT-------TTTTCAGATACTGTGTG-GTA---TAGT--------TGACCAC-T---AG-TTGA-ATGATT---AAC---T---CTTTG--AAAAT-T--TCA---G----C-AGTT-T----CCACTAG-AT-GAATA-C-T---TTAT-C-TTAAATGAAA-AA--AGGA-GTT-----GACTATT----GT--TG-AATG---C-TA--TGA-CT---T-CATCAT-TCT-----AGAAGGT-CTT-AGTGCT--C-CGA-C-------TTA---GA-AAAATTGAG-AGC-TGT--CCACT-AGG--TGAA-----TA-CTTG--A-T-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCT-TT--GTGTGG--ATT-TATTTTTCAAA---A--AAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCG-AT-ATT--AATC-AAGAAGA---AA-AAAATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCATCTTC--ATTGAAACTCTG--AATGG-GTTTCAGA---GTTT-GAGC------CGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAA-C---TTT-TCTGTACCGTTGAACAACCCCGATTGTAGCTTCTTAC-GAAG-ACTCGTTTTTGTGGCCAG----ACATATATG------CATAATGT-CCGAAAT-T------TGAA--ACCAGCTAG-----------A-----------TCCACAGG---AGTCTGAAGTTTCTA-TTAGTA-GGTGGT-GTA
gi|11 : ATAAGAAAAAGTCTAG---TTGACC-TCCATC--TAGTC----------------ATC--AACT-------A--------G---CT--------GTC---A----ACTA-A-CTATTG-CC----TGAA------T--AC-------G--CGTAAA-CAGTTGACCACTT--GGAGTT----AAATAC-TATT--TTG-----A----A----A------A-CTGTCAA-CTGGTT--TG-C-A-TA----A---A--A--TAA-A-CAGT-TG--AC-CA-TTAAT-TT-ACA--A-CT-------CTT-CAGATACTGTATG--TA---TAGT--------TGACCAC-T---AG-TTGA-ATG-CT---AAA---T---CTTTG--AAATT-T--TCA---G----C-AATTGT----CCACTAG-GT-GAATA-C-T---TGAT-C-TTAAATGACA-AA--AGGA-GTT-----GACTGTT----GT--TA-AACG---C-TA--TGA-CT---T-CATCAT-TCT-----AGAAG
gi|8 : ccATACGAAAAAGTCTAG---TTGACC-GTCAAC--TAGTC----------------ATC--AACT-------A--------G---CT--------GTC---A----ACTA-A-CTATTG-AC----TGAA------T--AC-------A--CGTAAA-CAGTTGACCACTT--GGAGTT----AAATAC-TATT--TTG-----A----A----A------AGCAGTCAA-CTGGTT--TG-C-A-TA----A---A--A--TAA-A-CAGT-TG--AC-CA-TTAAT-TG-AGA--G-C--------TCTTCAGATACTGTGT--GTA---TAGTTGACCAAGTGACCAC-C---AGTTTGA-ATG-CT---AAC---T---GTTTG--AAAAT-T--TCA---G----C-AGTTGT----CCACTAtgctagaaaataaaaataatggaatttttactcgt
gi|15 : ccATACGAAAAAGTCTAG---TTGACC-GTCAAC--TAGTC----------------ATC--AACT-------A--------G---CT--------GTC---A----ACTA-A-CTATTG-AC----TGAA------T---C----C--A--CGTAAA-CAGTTGACCACTT--GGAGTT----AAATAC-TATT--TTG-----A----A----A------AGCAGTCAA-CTGGTT--TG-C-A-TA----A---A--A--TAA-A-CAGT-TG--AC-CA-TTAAT-TG-ACA--G--T-------TTTTCAGATACTGTGT--GTA---TAGT--------TGACCAC-aggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|24 : cccATACGAAAAAGTCTAG---TTGACC-ATCAAC--TAGTT----------------GTC--AACT-------A--------A---CT----A---GT----G----ACTG-A-ATA
gi|26 : ccccATGCGAAAAAGTCTAG---TTTACC-GTCAAC--TAGTC----------------ATC--AACT-------A--------G---CT----cgcgtaaaca
gi|7 : cccACGAAAAAGTCTAGCATTTGACC-GTCAACATTAGTC----------------ATTCAAACT-------A--------GG--CT----G---TTC---A----ACTATA-CT--TGCAC----TGAA------TT-GCTATGC--A--CGTAAA-CAGTTGACTACTT--GGAGTT----AA---T-TATT--TTG-----A----A----A------AGCAGTCAA-C-GGTTGTTG-C-A-TA----A---A--A--TAATA-CAGTATGGTACTCA-T--ATATGTACA--GGCT-------ATTTCAGATACTGTGTG--TAATTTGAT--------TGACCACCT---GG-TTGA--TGGCTTAAAAC---TG--CTTTGGTAATAT-T--TCA---G----C-AGTTGT----CCACTAG-ATTGAATATC-T---TTATTC-TTAATTTAAAGAA--AGGATGTT-----GACTATT----GT--TG-AATGACTC-T---TGA-CT---TTCATCAT-TCTTAGGCAGAAGTG-CTT-A-TGCT--C-CGAAC-------TTA---GA-AAAATTGAG--GC-TGTGTCCACT-AGG--TGAA-----TA-CTTG--A-TGCTT-A-
gi|4 : cataaaAAAAAGTCTAG---T-GACCGTCCAACG-TAGTCTGTCTAATACTACCTAATT--GACTGTCAGGGA--------G---CT----ACGCGTC---AGAGAAC-A-G-CTAATG-ACACTATGACG-----TC-AT----A--ATTCGTACAAATGTGGAAAATTTATGGAATT----AATTACGTATT--TTGTTGGAACGTCA----A------AGCAGTCAAACTGGTTATTGAC-AATA----A---A--AATTAA-A-CAGTATG-----CA-TTAAT-TG-ACA--G-CT-------CTTTCATATACTGGTTA-GTA---T-GA--------TGACCAC-T---AT-TTGACATG-CT---AACACTC---CTTTG--GAAATAT--TCA---ATGCTC-AATT-TGCACCCACTAGTAT-GATTA-CTT---TTTT-C-TTAAATGAAA-AACTAGGA-GGT-----GACTATTTAGAAT--TGAAATG---CTTATCTGATCT---T-CATAATGTCCTG---AGAAGTG-C----GTGGT--CGCGG-CAGCATGTTTG---GA-CAGAATG----GCTTGT--CTATT-AGG--TG
gi|3 : AAAAGTCTAG---TTGACG-T-CAAC--TAGTC----------------ATC--AACA-------A--------G---T---------GTT---C----ACTA-AACTATTA-AT----TGAA------T---C----C--A---GTA---CAGT--ACCA-TT--GGAGTT----AAATAC-TATT--TTT-----G----A----A------AGCAGTCA---TGGTT--TG-CCA-TA----A---A--A----A-A--AGT-TA--AC-CA-TTA-T-TG-A-A--G----------TTTTCAG-TACTG-GTGTGTA---TAGT--------TGA--GC-T---TG-TTGA--TG-CT---AAT---T---CTTTG--AAA-T-T--TCA---G------AGTTGT----CC-CTAG--T-GA-TA-C-T---T-AT---TTAAATGAAA-GA---GGA-GTT-----GACTATT----GTGTTG-A-TG---C-T---T-A-CT---T-CAT-AT-TGT-----AGAGG----TT-A-TGCT--C--GA-C-------TTA---GAGAAAATTG-G-AG--TGT------T-AGG--TGA------TA-CTTGTTA-T-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT---TT--GTGTGG--GTTAGATTTTTTCAA---TTTAAG------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCG-ATTATC--A-TC-CAGAAGA---TA-AAAATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--TTTC---TTGAGACT-----GATAG-GAT--AGG---ATTT-GGGC------CGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--A-CTT-TTT-TCTGTG-CGTTGAACAA-CCCGA-TGT-GCTT-TTAC-G-AG-ACTCGTTTTTGTGGCC-G----ACATATATG-------GTAATGTGCCGAAAT-T------TGAAATACCAGCTAGGACTAGCGCATA-----------TCCACAGGATCAGTCTG-AGTTTCTACTTAG-A-GGT-GT-GTAtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|11 : ag---TTAGCA-TTCAAC--TAGTG----------------GTC--AACT-------ATACATACAGTATCTGAAGA---GTTGTAA----ATTA-A-TGGTCA-AC----TG-T------TT-AT----TTTA--TGCAAACCAGTTGAC---------AGTTTTCAAAATAG-TATT--T-------A----ACTCCA------AGTGGTCAA-CTGTTTA-CG-C-G-TATTC-AGGCA--A--TAG-T-TAGT-TG--AC-AG-CTAGT-TG-ATG--A-CT-------tt
gi|8 : ccataagaaaaagtctagttgacctccatctTC--AATT-------A--------A----T----G---GTC---A----ACTG-T-TTATT------------------TT-AT-----------GCAAACCAGTTGACTGCTT------TTCA--AAATAG-TATT--T-------A----ACTCCA------AGTGGTCAA-CTG-TT--TA-C-G-TG----T---A--T--T-----CAGT-CA--AT-AG-TTAGT-TG-ACA--G-C--------------------------------TAGT--------TGATGAC-T---AG-TTG--ACGGTC---AAC---TAGACTTTatctttgaaattttcagcaattgtccactaggtgaatacttgatcttaaatgacaaaaggagttgactgttgttaaacgctatgacttcatcattctagaagtgctagaaaataaaaataatggaatttttactcgt
gi|14 : ccatacgaaT----A---TTC---A----GCTG-A-TGATTC-AT----TGACAATCAATTGAC----C--A--T-TAA-----TTGACC-CTT--GG--TT----GAATTT-TGTACATGG-----A----A----ATGAGGGAGCGGTCAA-CTCATT--TG-C-A-TA----C---AGGA--GAA-ATCAGT-TG--AC-CA-TT-AT-TG-AAT--G-CT-------CCTCT--ATTCTCTGTG-------CAGA--------TGACCAT-T----G-TTGA-AT--------AC---TC--CTTT------AT-T--TTATGTG----C-AGTT-GA---CCACT-G-TT-GAATA-C-gagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|15 : ---GTC---A----ATTA-A-TGGTCA-AC----TG-T------TT-AT----TTTA--TGCAAACCAGTTGACTGCTT------TTCA--AAATAG-TATT--T-------A----ACTCCA------AGTGGTCAA-CT-GTT--TA-C-G-TG----G---A--T--T-----CAGT-CA--AT-AG-TTAGT-TG-ACA--G-C--------------------------------TAGT--------TGATGAC-T---AG-TTG--ACGGTC---AAC---TAGACTTTctttcattgaattttcgt
gi|1 : cccatacgaa------AGCGGTCAA-CTCATT--TG-C-A-TA----C---AGGA--GAA-ATCAGT-TG--AT-CA-TTAagtttttcagatactgtgtgtatagttgaccac
gi|6 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagTCAT-CTG-----TG-C-A-TACAGGA---G--A--GAA-A-TCAT-TA--AC-CA-TTA-T-TG-ATA--G-CG-------TCCTCTAAT-CTCTGT---T----CAGT--------TGACCAT-T---AG-TTGccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|16 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagattta--A--CAA-T-CAAT-TG--AC-CA-TCAAT-TG-AC---G-CT-------Tgttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|1 : aaggagtattcaacaatggtcaattgatttttttcctgtatgcaaatgaatgaccgctcccttcatttttcatgtgaaaaattcaacc-CGGT-TG---C-CA-CTGAT--G-ACA--G-CT-------CCT-CACAT-TTTCGTG-GCG-----GT--------TGACCAC-T----G-TTAA-Accatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|9 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtt-CGGT-TG--AC-CACTTGTT-TG-ACATGG-CTACCTATATTTT-----ACTGTGCG-GT----------------TGACCAC-T----G-TTGA-CTGcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : gtaacgtgccaaaaaacgtgttcggtcaaacaattggcagcctgttgcaaatatgcaaagtgaaccatttgcactgagctatcattatgttcgtattggtgtgggagtagaagtagaattcaaaaaaattagagacgaaattgatcacatttggtacatcaaaattagaggagcgtttcaactatggctcaaccgcacagtaataatatgtacgagagccggacaacaA---CAGT--------TGACCAC-TTGGAG-TTAA-AT-ACT---A---------TTTTG--AAAAC-TG-TCA---A----CTGGTT-T----GCATAAA-AT-AAACA-G-T---TGAC-CATTAATTTACA-A---------CTCTTCAGA-TACT----GT------ATG-----TA--T-A-GT---T-GACCA---CT-----AG-------TTGAATGCT--A-AAT-C-------TTT---GA-AATTTTCAGCAAT-TGT--CCACT-AGG--TGAA-----TA-CTTG--A-T-CTT-A-AATG----ACAAAAGGAGTccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaata
gi|8 : ccataagaaaaagtctagttgacctccatctagtcatcaactagctgtcaactaactattgcctgaatacgcgtaaA---CAGT--------TGACCAC-TTGGAG-TTAA-AT-ACT---A---------TTTTG--AAAAG-CAGTCA---A----CTGGTT-T----GCATAAA-AT-AAACA-G-T---TGAC-CATTAATTGA---------GA-GCTCTTCAGA-TACT----GTG-TG-TATA---G-T---TGA-CCAAGT-GACCA---CC-----A----GT-TTG-AATGCTAAC-TG----------TTT---GA-AAATTTCAGCAGT-TGT--CCACTAAGG--TGtgactgttgttaaacgctatgacttcatcattctagaagtgctagaaaataaaaataatggaatttttactcgt
gi|24 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaa---TAGT--------TGACAAC-T---AG-TTG--ATGGTC---AAC---TAGACTTTttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|14 : ccccatacgaaAGT--------TGACCAT-T---A--TTGA-ATGCTC-----C---T---CT--------AT-TC-TCT---GTG--C-AGAT-GA---CCATT-G-TT-GAATA-C-TCCTTTAT-T-TTATGTGCA-----------GTT-----GACCACT----GT--TG-AATA---C-actagtgactgaatacgcgtaaaca
gi|20 : ---CTTAG--AAAAA-A--TGA---G------AGCTGT----CCACTAG-GT-GGATA-C-T---TGAT-C-TTAAATGAAA-AG--AGgatttctcctgtatgcaaatgagttgaccgctccctcatttccatgtacaaaattcaaccaagggtcaattaatggtcaattgattgtcaatgaatcatcagctgaatactttcattgaattttcgt
gi|20 : ttcatcattcgaaagtgcttagtgctccgaT---T-CATCAT-TC-------GAAAGTGCTT-AGTGCT--C-CGA-C-------TTA---GA-AAAAATGAG-AGC-TGT--CCACT-AGG--TGGA-----TA-CTTG--A-T-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACGtgtggtgcggcagccatgtttggacaggacg
gi|4 : -C-------TTAAATGA-AAAACTAGG-AGG-TGA--CTATTTAGAATTGAAATGCTTA-TCTG--A-T-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTCTATTAGGTGTGGTGATTGTATTTT-CAAATTTA--AAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGAAT-GCTAAAATCTTAGAAGAATTAA-AAAAT-TGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-CTTCGAGTTGACACT-TGGTAATGGAG--TCAGATTGATTTGGAGC------CGTCGCCAGAAAATTTGTTTTCGCCGGAATTG
gi|8 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttA-AATATTGAG-AGT-TGT--CCACT-GGG--TGAA-----TA-CTTG--A-cgttttt
gi|7 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc-AGT-TGT--CCACT-AGAT-TGAA-----TATCTTT--ATT-CTT-A-ATTT----AAAGAAAGGATGTT-G
gi|13 : cataaaacgaaaaagtctagcatttgaccgtcaacattagtcattcaaactaggctgttcaactatacttgcactgaattgctatgcacgtaaacagttgactacttggagttaattattttgaaaagcagtcaacggttgttgcataaaataatacagtatggtactcatatatgtacaggctatttcagatactgtgtgtaatttgattgaccacctggttgatggcttaaaactgctttggtaatatttcagcTGTCA-CT--GTGAAG--ATT-TATTTTTAAAATTTG--ACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTG-AC-ATA--ATTC-CAGAGGA---TATAAAATGTGA--A---G--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC------------GAAACTTT----AGGA-GA--CAGG---GCTG-GAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGATTGTTATT---TACATTCGA-TATAGTGTAT---------AGTACAAT---AGTGTCTCTCATTAA-T---GGTATCTGTACAAT----CAGTCGCGATTATAGATTCTTCT-GGACCACTCGTTTT-GTGGCCAG----AC--ATGCG------CATAACGactattgttgaatgactcttgactttcatcattcttaggcagaagtgcttatgctccgaacttagaaaaattgaggctgtgtccactaggtgaatacttgatgctta
gi|10 : AA-----AGTGGAGTTCG-AT-ATA--AATC-CAGAAGAT--AA-AAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATTTTC--ATTGAGACT-----GATAG-GATTCAGG---ATTTGGAGC------CGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAA-CTTTTTT-TCTGTGCCGTTGAACAACCCCGA-TGTAGCTTCTTACGGAAG-ACTCGTTTTTGTGGCCAG----ACATATATG------CATAATGTGCCGAAAT-T------TGAA--ACCAGCTAG-----------A-----------TCTA
gi|1 : tcTGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGACC---TTT-TCTGTGCAATTGAGCAACCCCGATTGTAACTTCTTTTGGAAG-ACTCGTTTTTGTGGCCAG----CCATATATG------CATACTGTGCCGAAAT-T------TGAA--ACCAGCTAG-----------ATATATCGTCATTCCACAGG---AGTCTGAA-TTTCTATTTAGTATGGTGGTCGTAgcgtcattccacaggatcagtc
gi|5 : GTGCATGGAACAGAA-GTCTACTTAAAGTGTCACTCAT--A-CTT-TTT-TCTGTG-CGTTGAACAA-CCCGA-TGT-GCTT-TTAC-G-AG-ACTCGTTTTTGTGGCC-G----ACATATATG-------GTAATGTGCCGAAAT-T------TGAAATACCAGCTAGGACTAGCGCATA-----------TCCACAGGATCAGTCTG-AGTTTCTACTTAG-A-GGT-GT-GTAgtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|30 : CCCGACTGTAGCTTCTTACGGAAG-ACTCGTTTTTttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|12 : AAG-ACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAA--ACCAGCTAG-----------A-----------TCTA
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|23 ): GATTTCTATTGGATGCAAATGAGTTGACCGCTCCCTCATCAGCATGTGAAAAATTCAACCAAGGGTCAATTGAT
Unaligned ( gi|25 ): TATTCAACAATGGTCAACTGCACAGAGAATTGAGGAGCATTCAATAATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|28 ): AAATAAAGAAGTATTCAACAATGGTCAACTGCACAGAGAA
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 11 1 222222222 1 11111 2222222222222222222222222222222222 1111 111 2222222222 11111111 111 1 11 3333 111 111 111 1111 11 222222222 22222 222222 1 2222222 111 111 11111111 11 1 22222 1 33333333 11 1 1 222222 1 11 22222 11 11111 1111 11111 333333333 2222222222 1111111111 11 111 222222 11 1 1 1 111 1 1111 22222222 3333333 11 2 1 1 1 1
lowQualScore : 777 1 4 00 66 4 7 5 5 4 4 66 1 888888888 44 1 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 88 777 3 8 5 6666 2 44 2 2 2 9 444 1 000 99 3333333333 22222222 3 111 2 22 777 99999 1 888888 4 2222 777 777 999 3 6 6 999 1 8 111 8 6 7777 11 8 0 444444444 8 6 2 6 55555 555555 0 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 99999 3 1 0 8 55 0 6 7 55555555 33 9 3 1 3 0 888888 2 0 33 00000 11 88888 6 8 5555 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 9999999999 1 3333333333 11 444 0 0 333333 999 8 11 0 2 0 0 3 88 555 9 6 4 55 5 4 4 5 2222 22222222 5555555 44 0 5 77 0 6 0 3
lowQualScore : ... . . .. .. . . . . . . .. . ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .... . .. . . . . ... . ... .. .......... ........ . ... . .. ... ..... . ...... . .... ... ... ... . . . ... . . ... . . .... .. . . ......... . . . . ..... ...... . . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . . .. . . . ........ .. . . . . . ...... . . .. ..... .. ..... . . .... . . . . ..... . ......... . . . . . . . .......... . .......... .. ... . . ...... ... . .. . . . . . .. ... . . . .. . . . . .... ........ ....... .. . . .. . . . .
lowQualScore : 888 0 4 66 11 4 2 0 0 4 4 11 0 888888888 11 8 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 55 777 1 6 3 5555 7 99 9 9 8 2 888 8 555 22 3333333333 11111111 3 555 0 33 888 33333 9 888888 4 8888 888 444 333 5 7 7 222 0 0 888 0 0 0000 00 0 8 666666666 0 7 5 7 88888 000000 0 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 8 2 88 8 5 3 88888888 88 0 2 0 2 8 888888 5 0 88 00000 88 00000 0 0 0000 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 4444444444 4 0000000000 22 000 8 8 000000 000 0 00 8 5 0 0 3 88 555 2 7 3 11 0 3 3 0 1111 11111111 2222222 33 0 5 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGT-CAAC--TAGTCATC--AACTAG-CT-GTCAACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-ACA-GCTCTTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTGA-ATGGCT---AAC---T-CTTTG--AAAAT-TTCA----GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTC-T--T--GTGTGG--ATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA---TA-AA-AATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTGC-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAG----ACATATATG------CGTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCNT-CAAC--TAGTCATC--AACTAG-CTAGTCAACTA-A-CT-ATTG-AC--TGANTT-AC----CACGTAAA-CAGTTGACCGCTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-ACA-GCTTTTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTGA-ATGGCT---AAC---T-CTTTG--AAAAT-TTCA----GC---AGTTG--TCCACTAG-A-TGAATA-C-TTGA-TCTTAANTGAAA-AA--AGGA-GTTGACTACT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----AAAAAGAGCGTGGTCGCGGCAGCCATGTTTGGACAGGACGGCATTGTC-T--T--GTGTGG--ATTGTATTTTTNAAATTTNAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----NAATC-CAGAAGA---NA-AA-AATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATG--GGATTCAG---GATTTGGAG------CCGTC-CNAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTGCCGTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAG----ACATATATG------CGTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGAC--CTTTTCTGTGCAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAG----CCATATATG------CATACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG----C-CACTGAT--G-ACA-GCTCCT-CACAT---TTTC--GTG-GCG-----GT--------TGACCA-CT-G-TTAA-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtt------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--A-T-CATTAcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA---TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATT-TTC--ATTGAGAC--TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCCGTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAG----ACATATATG------CATAATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTC-CATC--TAGTCATC--AACTAG-CT-GTCAACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TT-ACA-ACTCTT-CAGATA--CTGT--ATG--TA---TAGT--------TGACCA-CTAG-TTGA-ATG-CT---AAA---T-CTTTG--AAATT-TTCA----GC---AATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAtgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCAC--T--GTGAAG--ATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA---TATAA-AATGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC-------------GAAACT-TT-AGG--AGA--CAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA------------ATAGTGTCTCTCATTAA--TGGTATCTGTAC-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAG----AC--ATGCG------CATAACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--A-C-CATT-AT-TG-AAT-GCTCCTCT--ATT--CTCT--GTG-------CAGA--------TGACCA-TT-G-TTGA-AT--------AC---TCCTTT------AT-TTTATGT-GC---AGTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGT-CAAC--TAGTCATC--AACTAG-CT-GTCAACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-ACA-G-TTTTTCAGATA--CTGT--GT--GTA---TAGT--------TGACCA-Cgaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--A-C-CATT-GT-TG-A
gi|16 : aaggagtat--A--CAA-T-CAAT-TG--A-C-CATCAAT-TG-AC--GCTTatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|2 : aaggagtattcaacaatggtcaattgatttttttcctgtatgcaaatgaatgaccgctcccttcatttttcatgtgaaaaattcaaccATACGAAAAAGTCTAG---TTGACCTT-CAAC--TAGTCATC--AACTAG-CTAGTCAACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-ACA-GCTTTTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTGA-ATGATT---AAC---T-CTTTG--AAAAT-TTCA----GC---AGTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--GGTCTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCTT--T--GTGTGG--ATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA---AA-AA-AATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TCTTC--ATTGAAACTCTGAATG--GGTTTCAG---AGTTT-GAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAAC---TTTTCTGTACCGTTGAA-CAACCCCGATTGTAGCTTCTTAC-GAAGACTCGTTTTTGTGGCCAG----ACATATATG------CATAATGT-CCGAAATTTGAA-------ACCAGCTAG------------ATCCACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|20 : -TTCATCAT-TCG-----AAAGT-G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AATG-----AAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGACCAT-CAAC--TAGTT---------------GTCAACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|26 : ccccATGCGAAAAAGTCTAG---TTTACCGT-CAAC--TAGTCATC--AACTAG-CT
gi|3 : cccAAAAGTCTAG---TTGAC-GT-CAAC--TAGTCATC--AACAAG-T--GTTCACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--A-C-CATTA-T-TG-A-A-G--TTTTCAG-TA--CTG---GTGTGTA---TAGT--------TGA--G-CTTG-TTGA--TG-CT---AAT---T-CTTTG--AAA-T-TTCA----G----AGTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAG--G---TTA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT--T--T--GTGTGG--GTTAGATTTTTTCAATTT-AAG------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA---TA-AA-AATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--T-TTC---TTGAGACT--G-ATA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTGC-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-G----ACATATATG-------GTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTCCAACG-TAGT--------CTGT-CTAAT--ACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG------CATTAAT-TG-ACA-GCTCTTTCATATA--CTGG--TTA-GTA---T-GA--------TGACCA-CTAT-TTGACAT-GCT---AACACTC-CTTTG--GAAATATTCAAT--GCTCAATTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAA--G---TGCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACCG----AAC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTC-TATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTAA-AA-AAT-TGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-C-TTCGAGTTGACACT-TG-GTAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTGC-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-G----ACATATATG-------GTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : GT-TG--AAC-CACTGTT-TG-AAACGCTC---CATATAAGCTGTCTATG-GCG-----GT--------TGACCA-CTTGTTTGACATGGCT---ACC---T-AT--------AT-TTTACTGTGC---GGTTG--ACCACTttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : tcaacTCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--A-C-CATTA-T-TG-ATA-GCGTCCTCTAAT---CTCT--GT---T----CAGT--------TGACCA-TTAG-TTGccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGT-CAACATTAGTCATTCAAACTAGGCTGTTCAACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTA-CTCAT--ATATGTACAGGCTATTTCAGATA--CTGT--GT--GTAATTTGAT--------TGACCACCTGG-TTG--ATGGCTTAAAAC---TGCTTTGGTAATAT-TTCA----GC---AGTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTG--CTTA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGT-CAAC--TAGTCATC--AACTAG-CT-GTCAACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-AGA-GC-TCTTCAGATA--CTGT--GT--GTA---TAGTTGACCAAGTGACCA-CCAGTTTGA-AT-GCT---AAC---T-GTTTG--AAAAT-TTCA----GC---AGTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGT-TG--AAC-CACTGTT-TG-AAACGCTC---CATATAAGCTGTCTATG-GCG-----GT--------TGACCA-CTTGTTTGACATGGCT---ACC---T-AT--------AT-TTTACTGTGC---GGTTG--ACCACT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|25 ): TATTCAACAATGGTCAACTGCACAGAGAATTGAGGAGCATTCAATAATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|28 ): AAATAAAGAAGTATTCAACAATGGTCAACTGCACAGAGAA
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 222222222 11111 2222222222222222222222222222222222 1111 11 11111111 111 2222222222 11111111 111 1 11 3333 111 111 1111 111 222 22222 222222 1 2222222 111 111 11111111 11 1 22222 1 33333333 11 1 33333333 1 11 22222 11 11111 11 11111 333333333 2222222222 111111 11 111 222222 11 1 1 11 1 1111 22222222 3333333 1 1 1 1 1
lowQualScore : 777 1 66 66 4 8 4 5 5 66 5 5 4 4 66 888888888 44 3 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 99 777 3 9 5 7777 2 00 2 2 55555555 2 888 7 111 77 8888888888 00000000 2 666 0 22 777 99999 1 888888 4 2222 777 777 999 3 6 6 999 8 111 6 4444 99 6 111 6 111 8 6 2 6 55555 555555 0 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 22222 3 1 6 55 0 6 7 55555555 33 9 3 0 3 22222222 2 0 33 00000 11 88888 6 8 11 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 9999999999 1 666666 11 66 444 0 0 333333 8 8 11 0 2 0 0 6 6 88 6 3 6 44 6 1 7 5 4 1 5 2222 22222222 1111111 1 9 77 0 6 0 3
lowQualScore : ... . .. .. . . . . . .. . . . . .. ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .... . .. . . ........ . ... . ... .. .......... ........ . ... . .. ... ..... . ...... . .... ... ... ... . . . ... . ... . .... .. . ... . ... . . . . ..... ...... . . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . .. . . . ........ .. . . . . ........ . . .. ..... .. ..... . . .. . . . . ..... . ......... . . . . . . . .......... . ...... .. .. ... . . ...... . . .. . . . . . . .. . . . .. . . . . . . . .... ........ ....... . . .. . . . .
lowQualScore : 888 1 11 11 4 9 4 0 0 99 0 0 4 4 11 888888888 11 6 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 22 888 3 2 7 6666 7 77 7 7 33333333 7 666 9 444 99 1111111111 44444444 9 333 0 33 888 33333 9 888888 4 8888 888 444 333 5 7 7 888 0 888 7 2222 22 7 777 7 666 0 7 5 7 88888 000000 0 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 0 88 8 5 3 88888888 88 0 2 2 2 00000000 5 0 88 00000 88 00000 0 0 00 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 4444444444 4 444444 00 66 000 8 8 000000 0 0 00 8 5 0 0 7 7 88 7 5 7 33 7 0 1 0 3 4 0 1111 11111111 2222222 3 5 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-A-----CA-GC-TCCTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTGA-ATGGCT---AAC---T-CTTTG--AAAAT-TTCA----GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTC-T-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TGA-TA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AA-GTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAG----ACATATATG------CGTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-A-----CA-GC-TCTTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTGA-ATGGCT---AAC---T-CTTTG--AAAAT-TTCA----GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTC-T-T---GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TGA-TA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AA-GTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAG----ACATATATG------CGTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAA-GTCCACTTAAAGTGTCACTCATTGAC--CTTTTCTGTG-CAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAG----CCATATATG------CATACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG----C-CACTGAT--G-A-----CA-GC-TCCT-CACAT---TTTC--GTG-GCG-----GT--------TGACCA-CT-G-TTAA-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtt------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--A-T-CATT-AC-TG-AATGCCCA-GA-CCTCT---ATT--CTCT--CTG-------CAGT--------TGATCA-TT---TTGA-Acagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATT-TTC--ATTGAGAC--TGA-TA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AA-GTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCC-GTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAG----ACATATATG------CATAATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTCCATC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TT-A-----CA-AC-TCTT-CAGATA--CTGT--ATG--TA---TAGT--------TGACCA-CTAG-TTGA-ATG-CT---AAA---T-CTTTG--AAATT-TTCA----GC---AATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAtgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCAC-T---GTGAA--GATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA--TATAAA-ATGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC-------------GAAACT-T---TA--GGAGACAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA-------------ATAGTGTCTCTCATTAA--TGGTATCTGTA-C-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAG----AC--ATGCG------CATAACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--A-C-CATT-AT-TG-A-----AT-GC-TCCTCT--ATT--CTCT--GTG-------CAGA--------TGACCA-TT-G-TTGA-AT--------AC---TCCTTT------AT-TTTATGT-GC---AGTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-A-----CA-G--TTTTTCAGATA--CTGT--GT--GTA---TAGT--------TGACCA-Cgaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--A-C-CATT-GT-TG-A-----AT-AC-TCCTT
gi|2 : ATACGAAAAAGTCTAG---TTGACCTTCAAC--TAGTCATC--AAC-TAG-CTAGT-C-A--ACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-A-----CA-GC-TTTTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTGA-ATGATT---AAC---T-CTTTG--AAAAT-TTCA----GC---AGTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--GGTCTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTC-T-TT--GTGTG--GATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA--AA-AAA-ATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TCTTC--ATTGAAACTCTGAATG--GGTTTCAG---AGTTTG-AG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAG-AAAGTCTAATTAAAGTGTCACTCATTAAC-TTTT--CTGTA-CCGTTGAA-CAACCCCGATTGTAGCTTCTTACG-AAGACTCGTTTTTGTGGCCAG----ACATATATG------CATAATGT-CCGAAATTTGAAA-------CCAGCTAGATC------------CACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|20 : -TTCATCAT-TCG-----AAAGT-G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGAC-------------CATC--AAC-TAG-TT-GT-C-A--ACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|25 : cccc-CATTA-T-TG-A-----AT-GC-TCCT-CA-ATT--CTCT--GTG-------CAGT--------TGACCA-TT-G-TTGA-AT
gi|26 : tATGCGAAAAAGTCTAG---TTTACCGTCAAC--TAGTCATC--AAC-TAG-CT-
gi|28 : cccA-GTTGACCATT----GT--TG-AATA---C-T
gi|3 : aaataaagaAAAAGTCTAG---TTGAC-GTCAAC--TAGTCATC--AAC-AAG--T-GT-T-C--ACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--A-C-CATTA-T-TG-A------A-GT-T--TTCAG-TA--CTG---GTGTGTA---TAGT--------TGA--G-CTTG-TTGA--TG-CT---AAT---T-CTTTG--AAA-T-TTCA----G----AGTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAG--G---TTA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT--T-T---GTGTG--GGTTAGATTTTTTCAATTTAA-G------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA--TA-AAA-ATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--T-TTC---TTGAGACT--GA-TA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AA-GTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAA-CCCGA-TGT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-G----ACATATATG-------GTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAgcacagagaa
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTC------------C--AACGTAGTCT-GT-CTAATACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG------CATTAAT-TG-A-----CA-GC-TCTTTCATATA--CTGG--TTA-GTA---T-GA--------TGACCA-CTAT-TTGACAT-GCT---AACACTC-CTTTG--GAAATATTCAAT--GCTCAATTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAA--G---TGCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACC---GA-AC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTC-TATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTA-AAA-AATTGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-C-TTCGAGTTGACACT-TGG-TAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AA-GTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-G----ACATATATG-------GTAATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : GT-TG--AAC-CACTGTT-TG-A-----AACGC-TC---CATATAAGCTGTCTATG-GCG-----GT--------TGACCA-CTTGTTTGACATGGCT---ACC---T-AT--------AT-TTTACTGTGC---GGTTG--ACCACTttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : tcaacTCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--A-C-CATTA-T-TG-A-----TA-GCGTCCTCTA-AT---CTCT--GT---T----CAGT--------TGACCA-TTAG-TTGccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGTCAACATTAGTCATTCAAAC-TAGGCT-GTTC-A--ACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTA-CTCAT--ATATGTA-----CAGGC-TATTTCAGATA--CTGT--GT--GTAATTTGAT--------TGACCACCTGG-TTG--ATGGCTTAAAAC---TGCTTTGGTAATAT-TTCA----GC---AGTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTG--CTTA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CATTAAT-TG-A-----GA-GC-TC-TTCAGATA--CTGT--GT--GTA---TAGTTGACCAAGTGACCA-CCAGTTTGA-AT-GCT---AAC---T-GTTTG--AAAAT-TTCA----GC---AGTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGT-TG--AAC-CACTGTT-TG-A-----AACGC-TC---CATATAAGCTGTCTATG-GCG-----GT--------TGACCA-CTTGTTTGACATGGCT---ACC---T-AT--------AT-TTTACTGTGC---GGTTG--ACCACT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 222222222 11111 2222222222222222222222222222222222 1111 111 111 2222222222 111 11 111111 2222 111 111 111 1111 111 222 22222 222222 1 2222222 111 111 11111111 11 1 22222 1 111 11 11 1 33333333 1 11 22222 11 11111 11 11111 333333333 2222222222 11111 11 111 222222 11 1 1 1 111 1 1111 111111 3333333 1 1 1 1 1
lowQualScore : 777 1 66 66 4 8 4 5 5 66 5 5 4 4 66 888888888 44 3 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 99 777 3 9 5 6666 2 33 99 2 2 111 5 444 1 8 111 77 8888888888 99999999 2 777 2 9 44 777 777 8 0 999999 4 111111 9999 777 000 3 555 3 6 6 999 8 111 6 4444 99 6 111 6 111 8 6 2 6 55555 555555 0 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 22222 3 1 6 55 0 6 7 666 33 33 9 3 0 3 22222222 2 0 33 00000 11 88888 6 8 11 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 9999999999 1 77777 11 66 444 0 0 333333 8 8 11 0 2 0 0 3 88 555 3 77 6 4 55 5 4 4 5 2222 55 666666 5555555 7 1 3 77 0 6 0 3
lowQualScore : ... . .. .. . . . . . .. . . . . .. ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .... . .. .. . . ... . ... . . ... .. .......... ........ . ... . . .. ... ... . . ...... . ...... .... ... ... . ... . . . ... . ... . .... .. . ... . ... . . . . ..... ...... . . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . .. . . . ... .. .. . . . . ........ . . .. ..... .. ..... . . .. . . . . ..... . ......... . . . . . . . .......... . ..... .. .. ... . . ...... . . .. . . . . . .. ... . .. . . .. . . . . .... .. ...... ....... . . . .. . . . .
lowQualScore : 888 1 11 11 4 9 4 0 0 99 0 0 4 4 11 888888888 11 6 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 22 888 3 2 3 5555 5 44 88 5 5 111 0 444 1 3 888 33 9999999999 77777777 7 333 9 2 11 000 000 0 8 999999 0 555555 5555 000 777 2 333 5 7 7 888 0 888 7 2222 22 7 777 7 666 0 7 5 7 88888 000000 0 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 0 88 8 5 3 000 88 88 0 2 2 2 00000000 5 0 88 00000 88 00000 0 0 00 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 4444444444 4 66666 00 66 000 8 8 000000 0 0 00 8 5 0 0 3 88 555 3 77 7 3 11 0 3 3 0 1111 77 444444 2222222 8 3 3 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CAT--TAAT-TG-ANA-GC-TC---CTTCANATA--CTGT--GTG-GTA---TAGT--------TGACCA-CT-G-TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA----GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CAT--TAAT-TG-ACA-GC-TC---CTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA----GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGAC--CTTTTCTGTG-CAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAGCCATA----TATGCAT------ACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG----C-CAC--TGAT--G-ACA-GC-TC---C-TCACAT---TTTC--GTG-G-----CGGT--------TGACCA-CT-G-TTA-A-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgttGT-TG--A-C-CATGTTGA---G-ATA-GCATC---CTT-ATTTT--CCGT--GCG-GT----------------TGACCA-CT-G-TTGAA-ATG--------C---T-CCTAA--TAGAT-TATTTTCTCT----GC---GGTTG---CCACT-G-A-TGAcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctg------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--A-T-CAT--T-AC-TG-AAT-GC-CCAGACCTC-TATT--CTCT--CTG-------CAGT--------TGATCA-TT---TTG-A-Agcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATT-TTC--ATTGAGAC--TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCC-GTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTCCATC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CAT--TAAT-TT-ACA-AC-TC----TTCAGATA--CTGT--ATG--TA---TAGT--------TGACCA-CTAG-TTG-A-ATG-CT---AAA---T-CTTTG--AAATT-T------TCA----GC---AATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAtgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCA-CT--GTGAA--GATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA--TATAAA-ATGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC-------------GAAACT-T---TA--GGAGACAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA------------ATAGTGTCTCTCATTAA--TGGTATCTGTA-C-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAGAC--A----TGCGCAT------AACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--A-C-CAT--T-AT-TG-AAT-GC-TC---CTCT--ATT--CTCT--GTG-------CAGA--------TGACCA-TT-G-TTG-A-AT--------AC---TCCTTT------AT-T------TTATGT-GC---AGTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CAT--TAAT-TG-ACA-G--TT---TTTCAGATA--CTGT--GT--GTA---TAGT--------TGACCA-Cgaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--A-C-CAT--T-GT-TG-AAT-AC-TC---CTT
gi|2 : ATACGAAAAAGTCTAG---TTGACCTTCAAC--TAGTCATC--AAC-TAG-CTAGT-C-A--ACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CAT--TAAT-TG-ACA-GC-TT---TTTCAGATA--CTGT--GTG-GTA---TAGT--------TGACCA-CTAG-TTG-A-ATGATT---AAC---T-CTTTG--AAAAT-T------TCA----GC---AGTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--GGTCTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA--AA-AAA-ATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TCTTC--ATTGAAACTCTGAATG--GGTTTCAG---AGTTT-GAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAAC---TTTTCTGTACC-GTTGAA-CAACCCCGATTGTAGCTTCTTAC-GAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGT-CCGAAATTTGAA-------ACCAGCTAGA------------TCCACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|20 : -TTCATCAT-TCG-----AAAGT-G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGAC-------------CATC--AAC-TAG-TT-GT-C-A--ACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|25 : cccc-CAT--TA-T-TG-AAT-GC-TC---CT-CA-ATT--CTCT--GTG-------CAGT--------TGACCA-TT-G-TTG-A-AT
gi|26 : tATGCGAAAAAGTCTAG---TTTACCGTCAAC--TAGTCATC--AAC-TAG-CT-
gi|28 : cccA-GTTGACCATT----GT--TG-AATA---C-T
gi|3 : aaataaagaAAAAGTCTAG---TTGAC-GTCAAC--TAGTCATC--AAC-AAG--T-GT-T-C--ACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--A-C-CAT--TA-T-TG-A-A-GT-T-----TTCAG-TA--CTG---GTGTGTA---TAGT--------TGA--G-CTTG-TTG-A--TG-CT---AAT---T-CTTTG--AAA-T-T------TCA----G----AGTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAG--G---TTA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT---TT--GTGTG--GGTTAGATTTTTTCAATTTAA-G------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA--TA-AAA-ATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--T-TTC---TTGAGACT--G-ATA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAgcacagagaa
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTC------------C--AACGTAGTCT-GT-CTAATACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG------CAT--TAAT-TG-ACA-GC-TC---TTTCATATA--CTGG--TTA-GTA---T-GA--------TGACCA-CTAT-TTG-ACAT-GCT---AACACTC-CTTTG--GAAATAT------TCAAT--GCTCAATTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAA--G---TGCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACC---GA-AC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTCTATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTA-AAA-AATTGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-C-TTCGAGTTGACACT-TG-GTAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : GT-TG--AAC-CAC--TGTT-TG-AAACGC-TC---C---ATATAAGCTGTCTATG-GCG-----GT--------TGACCA-CTTGTTTG-ACATGGCT---ACC---T-AT--------AT-T------TTACTGTGC---GGTTG--ACCACTttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : tcaacTCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--A-C-CAT--TA-T-TG-ATA-GCGTC---CTCTA-AT---CTCT--GT---T----CAGT--------TGACCA-TTAG-TTG-ccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGTCAACATTAGTCATTCAAAC-TAGGCT-GTTC-A--ACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTA-CTCAT----ATATGTACAGGC-TA---TTTCAGATA--CTGT--GT--GTAATTTGAT--------TGACCACCTGG-TTG---ATGGCTTAAAAC---TGCTTTGGTAATAT-T------TCA----GC---AGTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTG--CTTA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--A-C-CAT--TAAT-TG-AGA-GC-T----CTTCAGATA--CTGT--GT--GTA---TAGTTGACCAAGTGACCA-CCAGTTTG-A-AT-GCT---AAC---T-GTTTG--AAAAT-T------TCA----GC---AGTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGT-TG--AAC-CAC--TGTT-TG-AAACGC-TC---C---ATATAAGCTGTCTATG-GCG-----GT--------TGACCA-CTTGTTTG-ACATGGCT---ACC---T-AT--------AT-T------TTACTGTGC---GGTTG--ACCACT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 222222222 11111 2222222222222222222222222222222222 1111 1111 1111 2222222222 222222222222 2222222 11111 111111 111 111 111 1111 111 222 22222 222222 1 2222222 111 111 11111111 11 1 22222 1 111 11 11 1 33333333 1 11 22222 11 11111 11 11111 333333333 2222222222 11111 11 111 222222 11 1 1 1 111 1 1111 111111 3333333 1 1 1 1 1
lowQualScore : 777 1 66 66 4 8 4 5 5 66 5 5 4 4 66 888888888 44 3 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 99 777 3 8 5 33 2 5 33 99 2 2 0000 5 99999 8888 3333 8888888888 2 111111111111 2 3 3333333 11111 66 0 5 444444 555 888 999 3 555 3 6 6 999 8 111 6 4444 99 6 111 6 111 8 6 2 6 55555 555555 0 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 22222 3 1 6 55 0 6 7 666 33 33 9 3 0 3 22222222 2 0 33 00000 11 88888 6 8 11 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 9999999999 1 77777 11 66 444 0 0 333333 8 8 11 0 2 0 0 3 88 555 3 77 6 4 55 5 4 4 5 2222 55 666666 5555555 7 1 3 77 0 6 0 3
lowQualScore : ... . .. .. . . . . . .. . . . . .. ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .. . . .. .. . . .... . ..... .... .... .......... . ............ . . ....... ..... .. . . ...... ... ... ... . ... . . . ... . ... . .... .. . ... . ... . . . . ..... ...... . . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . .. . . . ... .. .. . . . . ........ . . .. ..... .. ..... . . .. . . . . ..... . ......... . . . . . . . .......... . ..... .. .. ... . . ...... . . .. . . . . . .. ... . .. . . .. . . . . .... .. ...... ....... . . . .. . . . .
lowQualScore : 888 1 11 11 4 9 4 0 0 99 0 0 4 4 11 888888888 11 6 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 22 888 3 0 3 77 5 0 44 88 5 5 3333 0 22222 3333 8888 1111111111 7 555555555555 9 1 8888888 66666 99 4 0 444444 666 888 111 2 333 5 7 7 888 0 888 7 2222 22 7 777 7 666 0 7 5 7 88888 000000 0 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 0 88 8 5 3 000 88 88 0 2 2 2 00000000 5 0 88 00000 88 00000 0 0 00 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 4444444444 4 66666 00 66 000 8 8 000000 0 0 00 8 5 0 0 3 88 555 3 77 7 3 11 0 3 3 0 1111 77 444444 2222222 8 3 3 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TAGTTGACC-ACT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ANA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TAGTTGACC-ACT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGAC--CTTTTCTGTG-CAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAGCCATA----TATGCAT------ACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG---C-CA-C--TGAT--G-ACA--GC-T-C---CT-CACAT----TTTCGTG-GCG-----GTTGACC-ACT--G---------TTA-A-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgttGT-TG--AC-CA-TGTTGA---G-ATA--GCAT-C---CTT-ATTT---TCCGTGCG-GT--------TGACC-ACT--G---------TTGAA-ATG--------C---T-CCTAA--TAGAT-TATTTTCTCT---GC---GGTTG---CCACT-G-A-TGAcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctg------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AT-CA-T--T-AC-TG-AAT--GC-C-CAGACCTC-TAT---TCTCTCTG-------CAGTTGATC-ATT------------TTG-A-Agcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATT-TTC--ATTGAGAC--TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCC-GTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTCCATC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TT-ACA--AC-T-C----TTCAGAT---ACTGTATG--TA---TAGTTGACC-ACTA-G---------TTG-A-AT-GCT---AAA---T-CTTTG--AAATT-T------TCA---GC---AATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAtgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCA-CT--GTGAA--GATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA--TATAAA-ATGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC-------------GAAACT-T---TA--GGAGACAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA------------ATAGTGTCTCTCATTAA--TGGTATCTGTA-C-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAGAC--A----TGCGCAT------AACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AC-CA-T--T-AT-TG-AAT--GC-T-C---CTC--TAT---TCTCTGTG-------CAGATGACC-ATT--G---------TTG-A-AT--------AC---TCCTTT------AT-T------TTATGTGC---AGTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--G--T-T---TTTCAGAT---ACTGTGT--GTA---TAGTTGACC-ACgaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--AC-CA-T--T-GT-TG-AAT--AC-T-C---CTT
gi|2 : ATACGAAAAAGTCTAG---TTGACCTTCAAC--TAGTCATC--AAC-TAG-CTAGT-C-A--ACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-T---TTTCAGAT---ACTGTGTG-GTA---TAGTTGACC-ACTA-G---------TTG-A-ATGATT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--GGTCTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA--AA-AAA-ATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TCTTC--ATTGAAACTCTGAATG--GGTTTCAG---AGTTT-GAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAAC---TTTTCTGTACC-GTTGAA-CAACCCCGATTGTAGCTTCTTAC-GAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGT-CCGAAATTTGAA-------ACCAGCTAGA------------TCCACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|20 : -TTCATCAT-TCG-----AAAGT-G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGAC-------------CATC--AAC-TAG-TT-GT-C-A--ACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|25 : cccc-CA-T--TA-T-TG-AAT--GC-T-C---CT-CA-AT---TCTCTGTG-------CAGTTGACC-ATT--G---------TTG-A-AT
gi|26 : tATGCGAAAAAGTCTAG---TTTACCGTCAAC--TAGTCATC--AAC-TAG-CT-
gi|28 : cccA-GTTGACCATT----GT--TG-AATA---C-T
gi|3 : aaataaagaAAAAGTCTAG---TTGAC-GTCAAC--TAGTCATC--AAC-AAG--T-GT-T-C--ACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--AC-CA-T--TA-T-TG-A-A--GT-T------TTCAG-T---ACTG-GTGTGTA---TAGTTGAGC--TT--G---------TTG-A--TG-CT---AAT---T-CTTTG--AAA-T-T------TCA---G----AGTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAG--G---TTA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT---TT--GTGTG--GGTTAGATTTTTTCAATTTAA-G------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA--TA-AAA-ATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--T-TTC---TTGAGACT--G-ATA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAgcacagagaa
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTC------------C--AACGTAGTCT-GT-CTAATACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG-----CA-T--TAAT-TG-ACA--GC-T-C---TTTCATAT---ACTGGTTA-GTA---T-GATGACC-ACT--AT--------TTG-ACAT-GCT---AACACTC-CTTTG--GAAATAT------TCAAT-GCTCAATTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAA--G---TGCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACC---GA-AC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTCTATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTA-AAA-AATTGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-C-TTCGAGTTGACACT-TG-GTAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : -CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT--ATATTTTACTGTGCG-GT--------TGACC-ACT--G---------TTG-A-ttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : TCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--AC-CA-T--TA-T-TG-ATA--GCGT-C---CTCTA-AT----CTCTGT---T----CAGTTGACC-ATTA-G---------TTG-ccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGTCAACATTAGTCATTCAAAC-TAGGCT-GTTC-A--ACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTACTCA-T----ATATGTACAG-GC-T-A---TTTCAGAT---ACTGTGT--GTAATTTGATTGACC-ACCTGG---------TTG---ATGGCTTAAAAC---TGCTTTGGTAATAT-T------TCA---GC---AGTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTG--CTTA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-AGA--GC-T-----CTTCAGAT---ACTGTGT--GTA---TAGTTGACCAAGT--GACCACCAGTTTG-A-AT-GCT---AAC---T-GTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc-CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT--ATATTTTACTGTGCG-GT--------TGACC-ACT--G---------TTG-A-CTG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 222222222 11111 2222222222222222222222222222222222 1111 11111 1111 22222222222 111111111111 1111111 11111 111111 111 111 111 1111 111 222 22222 222222 1 2222222 111 111 11111111 11 1 22222 1 111 11 11 1 33333333 1 11 22222 11 11111 11 11111 333333333 2222222222 11111 11 111 222222 11 1 1 1 111 1 1111 111111 3333333 1 1 1 1 1
lowQualScore : 777 1 66 66 4 8 4 5 5 66 5 5 4 4 66 888888888 44 3 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 99 777 3 7 5 33 2 4 33 99 2 4 9999 4 00000 7777 4444 0 88888888888 33 33 2 33 999999999999 2 2 7777777 11111 66 0 5 444444 555 888 999 3 555 3 6 6 999 8 111 6 4444 99 6 111 6 111 8 6 2 6 55555 555555 0 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 22222 3 1 6 55 0 6 7 666 33 33 9 3 0 3 22222222 2 0 33 00000 11 88888 6 8 11 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 9999999999 1 77777 11 66 444 0 0 333333 8 8 11 0 2 0 0 3 88 555 3 77 6 4 55 5 4 4 5 2222 55 666666 5555555 7 1 3 77 0 6 0 3
lowQualScore : ... . .. .. . . . . . .. . . . . .. ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .. . . .. .. . . .... . ..... .... .... . ........... .. .. . .. ............ . . ....... ..... .. . . ...... ... ... ... . ... . . . ... . ... . .... .. . ... . ... . . . . ..... ...... . . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . .. . . . ... .. .. . . . . ........ . . .. ..... .. ..... . . .. . . . . ..... . ......... . . . . . . . .......... . ..... .. .. ... . . ...... . . .. . . . . . .. ... . .. . . .. . . . . .... .. ...... ....... . . . .. . . . .
lowQualScore : 888 1 11 11 4 9 4 0 0 99 0 0 4 4 11 888888888 11 6 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 22 888 3 5 0 44 4 7 22 11 4 7 6666 7 44444 1111 0000 9 88888888888 44 44 5 44 444444444444 7 9 1111111 66666 99 4 0 444444 666 888 111 2 333 5 7 7 888 0 888 7 2222 22 7 777 7 666 0 7 5 7 88888 000000 0 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 0 88 8 5 3 000 88 88 0 2 2 2 00000000 5 0 88 00000 88 00000 0 0 00 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 4444444444 4 66666 00 66 000 8 8 000000 0 0 00 8 5 0 0 3 88 555 3 77 7 3 11 0 3 3 0 1111 77 444444 2222222 8 3 3 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGAC--CTTTTCTGTG-CAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAGCCATA----TATGCAT------ACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG---C-CA-C--TGAT--G-ACA--GC-T-C---CT-CACAT----TTTCGTG-GCG------G--TTGA--CC-A--CT--G---------TTA-A-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgttGT-TG--AC-CA-TGTTGA---G-ATA--GCAT-C---CTT-ATTT---TCCGTGCG-GT-----------TGA--CC-A--CT--G---------TTGAA-ATG--------C---T-CCTAA--TAGAT-TATTTTCTCT---GC---GGTTG---CCACT-G-A-TGAcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctg------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AT-CA-T--T-AC-TG-AAT--GC-C-CAGACCTC-TAT---TCTCTCTG-------CA-G--TTGA--TC-A--TT------------TTG-A-Agcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATT-TTC--ATTGAGAC--TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCC-GTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTCCATC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TT-ACA--AC-T-C----TTCAGAT---ACTGTATG--TA---TA-G--TTGA--CC-A--CTA-G---------TTG-A-AT-GCT---AAA---T-CTTTG--AAATT-T------TCA---GC---AATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAtgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCA-CT--GTGAA--GATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA--TATAAA-ATGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC-------------GAAACT-T---TA--GGAGACAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA------------ATAGTGTCTCTCATTAA--TGGTATCTGTA-C-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAGAC--A----TGCGCAT------AACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AC-CA-T--T-AT-TG-AAT--GC-T-C---CTC--TAT---TCTCTGTG-------CA-G--ATGA--CC-A--TT--G---------TTG-A-AT--------AC---TCCTTT------AT-T------TTATGTGC---AGTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--G--T-T---TTTCAGAT---ACTGTGT--GTA---TA-G--TTGA--CC-A--Cgaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--AC-CA-T--T-GT-TG-AAT--AC-T-C---CTT
gi|2 : ATACGAAAAAGTCTAG---TTGACCTTCAAC--TAGTCATC--AAC-TAG-CTAGT-C-A--ACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-T---TTTCAGAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CTA-G---------TTG-A-ATGATT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--GGTCTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA--AA-AAA-ATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TCTTC--ATTGAAACTCTGAATG--GGTTTCAG---AGTTT-GAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAAC---TTTTCTGTACC-GTTGAA-CAACCCCGATTGTAGCTTCTTAC-GAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGT-CCGAAATTTGAA-------ACCAGCTAGA------------TCCACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|20 : -TTCATCAT-TCG-----AAAGT-G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGAC-------------CATC--AAC-TAG-TT-GT-C-A--ACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|25 : cccc-CA-T--TA-T-TG-AAT--GC-T-C---CT-CA-AT---TCTCTGTG-------CA-G--TTGA--CC-A--TT--G---------TTG-A-AT
gi|26 : tATGCGAAAAAGTCTAG---TTTACCGTCAAC--TAGTCATC--AAC-TAG-CT-
gi|28 : cccA-GTTGACCATT----GT--TG-AATA---C-T
gi|3 : aaataaagaAAAAGTCTAG---TTGAC-GTCAAC--TAGTCATC--AAC-AAG--T-GT-T-C--ACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--AC-CA-T--TA-T-TG-A-A--GT-T------TTCAG-T---ACTG-GTGTGTA---TA-G--TTGA--GC----TT--G---------TTG-A--TG-CT---AAT---T-CTTTG--AAA-T-T------TCA---G----AGTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAG--G---TTA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT---TT--GTGTG--GGTTAGATTTTTTCAATTTAA-G------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA--TA-AAA-ATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--T-TTC---TTGAGACT--G-ATA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAgcacagagaa
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTC------------C--AACGTAGTCT-GT-CTAATACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG-----CA-T--TAAT-TG-ACA--GC-T-C---TTTCATAT---ACTGGTTA-GTA---T--G--ATGA--CC-A--CT--AT--------TTG-ACAT-GCT---AACACTC-CTTTG--GAAATAT------TCAAT-GCTCAATTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAA--G---TGCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACC---GA-AC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTCTATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTA-AAA-AATTGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-C-TTCGAGTTGACACT-TG-GTAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : -CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT--ATATTTTACTGTGCG-GT-----------TGA--CC-A--CT--G---------TTG-A-ttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : -CAGT-TG--AC-CA-T--TAGT-TGTAAA--TC-T-CG--TTTTATTT---TCT-TGCT-GTG---CATGTTTTGAACCC-ACGCT--G---------TTG-A-ATGGCT---ccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|6 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaTCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--AC-CA-T--T-AT-TG-ATA--GCGT-C---CTCTA-AT----CTCTGT---T----CA-G--TTGA--CC-A--TTA-G---------TTG-aacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGTCAACATTAGTCATTCAAAC-TAGGCT-GTTC-A--ACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTACTCA-T----ATATGTACAG-GC-T-A---TTTCAGAT---ACTGTGT--GTAATTTG-A--TTGA--CC-A--CCTGG---------TTG---ATGGCTTAAAAC---TGCTTTGGTAATAT-T------TCA---GC---AGTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTG--CTTA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-AGA--GC-T-----CTTCAGAT---ACTGTGT--GTA---TA-G--TTGA--CCAA--GT--GACCACCAGTTTG-A-AT-GCT---AAC---T-GTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc-CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT--ATATTTTACTGTGCG-GT-----------TGA--CC-A--CT--G---------TTG-A-CTG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 222222222 11111 2222222222222222222222222222222222 1111 11111 1111 22222222222 111111111111 1111111 11111 111111 111 111 111 1111 111 222 22222 222222 1 2222222 111 111 11111111 11 1 22222 1 111 11 11 1 33333333 1 11 22222 11 11111 11 11111 333333333 2222222222 11111 11 111 222222 11 1 1 1 111 1 1111 111111 3333333 1 1 1 1 1
lowQualScore : 777 1 66 66 4 8 4 5 5 66 5 5 4 4 66 888888888 44 3 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 99 777 3 7 5 33 2 4 33 99 2 4 9999 4 00000 7777 4444 0 88888888888 33 33 2 33 999999999999 2 2 7777777 11111 66 0 5 444444 555 888 999 3 555 3 6 6 999 8 111 6 4444 99 6 111 6 111 8 6 2 6 55555 555555 0 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 22222 3 1 6 55 0 6 7 666 33 33 9 3 0 3 22222222 2 0 33 00000 11 88888 6 8 11 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 9999999999 1 77777 11 66 444 0 0 333333 8 8 11 0 2 0 0 3 88 555 3 77 6 4 55 5 4 4 5 2222 55 666666 5555555 7 1 3 77 0 6 0 3
lowQualScore : ... . .. .. . . . . . .. . . . . .. ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .. . . .. .. . . .... . ..... .... .... . ........... .. .. . .. ............ . . ....... ..... .. . . ...... ... ... ... . ... . . . ... . ... . .... .. . ... . ... . . . . ..... ...... . . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . .. . . . ... .. .. . . . . ........ . . .. ..... .. ..... . . .. . . . . ..... . ......... . . . . . . . .......... . ..... .. .. ... . . ...... . . .. . . . . . .. ... . .. . . .. . . . . .... .. ...... ....... . . . .. . . . .
lowQualScore : 888 1 11 11 4 9 4 0 0 99 0 0 4 4 11 888888888 11 6 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 22 888 3 5 0 44 4 7 22 11 4 7 6666 7 44444 1111 0000 9 88888888888 44 44 5 44 444444444444 7 9 1111111 66666 99 4 0 444444 666 888 111 2 333 5 7 7 888 0 888 7 2222 22 7 777 7 666 0 7 5 7 88888 000000 0 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 0 88 8 5 3 000 88 88 0 2 2 2 00000000 5 0 88 00000 88 00000 0 0 00 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 4444444444 4 66666 00 66 000 8 8 000000 0 0 00 8 5 0 0 3 88 555 3 77 7 3 11 0 3 3 0 1111 77 444444 2222222 8 3 3 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGAC--CTTTTCTGTG-CAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAGCCATA----TATGCAT------ACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG---C-CA-C--TGAT--G-ACA--GC-T-C---CT-CACAT----TTTCGTG-GCG------G--TTGA--CC-A--CT--G---------TTA-A-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgttGT-TG--AC-CA-TGTTGA---G-ATA--GCAT-C---CTT-ATTT---TCCGTGCG-GT-----------TGA--CC-A--CT--G---------TTGAA-ATG--------C---T-CCTAA--TAGAT-TATTTTCTCT---GC---GGTTG---CCACT-G-A-TGAcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctg------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AT-CA-T--T-AC-TG-AAT--GC-C-CAGACCTC-TAT---TCTCTCTG-------CA-G--TTGA--TC-A--TT------------TTG-A-Agcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAGCCATT-TTC--ATTGAGAC--TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCC-GTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTCCATC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TT-ACA--AC-T-C----TTCAGAT---ACTGTATG--TA---TA-G--TTGA--CC-A--CTA-G---------TTG-A-AT-GCT---AAA---T-CTTTG--AAATT-T------TCA---GC---AATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAtgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCA-CT--GTGAA--GATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA--TATAAA-ATGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AGC-------------GAAACT-T---TA--GGAGACAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA------------ATAGTGTCTCTCATTAA--TGGTATCTGTA-C-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAGAC--A----TGCGCAT------AACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AC-CA-T--T-AT-TG-AAT--GC-T-C---CTC--TAT---TCTCTGTG-------CA-G--ATGA--CC-A--TT--G---------TTG-A-AT--------AC---TCCTTT------AT-T------TTATGTGC---AGTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--G--T-T---TTTCAGAT---ACTGTGT--GTA---TA-G--TTGA--CC-A--Cgaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--AC-CA-T--T-GT-TG-AAT--AC-T-C---CTT
gi|2 : ATACGAAAAAGTCTAG---TTGACCTTCAAC--TAGTCATC--AAC-TAG-CTAGT-C-A--ACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-T---TTTCAGAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CTA-G---------TTG-A-ATGATT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--GGTCTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA--AA-AAA-ATGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-TCTTC--ATTGAAACTCTGAATG--GGTTTCAG---AGTTT-GAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAAC---TTTTCTGTACC-GTTGAA-CAACCCCGATTGTAGCTTCTTAC-GAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGT-CCGAAATTTGAA-------ACCAGCTAGA------------TCCACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|20 : -TTCATCAT-TCG-----AAAGT-G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGAC-------------CATC--AAC-TAG-TT-GT-C-A--ACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|25 : cccc-CA-T--TA-T-TG-AAT--GC-T-C---CT-CA-AT---TCTCTGTG-------CA-G--TTGA--CC-A--TT--G---------TTG-A-AT
gi|26 : tATGCGAAAAAGTCTAG---TTTACCGTCAAC--TAGTCATC--AAC-TAG-CT-
gi|28 : cccA-GTTGACCATT----GT--TG-AATA---C-T
gi|3 : aaataaagaAAAAGTCTAG---TTGAC-GTCAAC--TAGTCATC--AAC-AAG--T-GT-T-C--ACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--AC-CA-T--TA-T-TG-A-A--GT-T------TTCAG-T---ACTG-GTGTGTA---TA-G--TTGA--GC----TT--G---------TTG-A--TG-CT---AAT---T-CTTTG--AAA-T-T------TCA---G----AGTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAG--G---TTA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT---TT--GTGTG--GGTTAGATTTTTTCAATTTAA-G------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA--TA-AAA-ATGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAGCC--T-TTC---TTGAGACT--G-ATA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAgcacagagaa
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTC------------C--AACGTAGTCT-GT-CTAATACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG-----CA-T--TAAT-TG-ACA--GC-T-C---TTTCATAT---ACTGGTTA-GTA---T--G--ATGA--CC-A--CT--AT--------TTG-ACAT-GCT---AACACTC-CTTTG--GAAATAT------TCAAT-GCTCAATTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAA--G---TGCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACC---GA-AC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTCTATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTA-AAA-AATTGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA-C-TTCGAGTTGACACT-TG-GTAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--AC-TTTTTTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : -CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT--ATATTTTACTGTGCG-GT-----------TGA--CC-A--CT--G---------TTG-A-ttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : -CAGT-TG--AC-CA-T--TAGT-TGTAAA--TC-T-CG--TTTTATTT---TCT-TGCT-GTG---CATGTTTTGAACCC-ACGCT--G---------TTG-A-ATGGCT---ccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|6 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaTCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--AC-CA-T--T-AT-TG-ATA--GCGT-C---CTCTA-AT----CTCTGT---T----CA-G--TTGA--CC-A--TTA-G---------TTG-aacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGTCAACATTAGTCATTCAAAC-TAGGCT-GTTC-A--ACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTACTCA-T----ATATGTACAG-GC-T-A---TTTCAGAT---ACTGTGT--GTAATTTG-A--TTGA--CC-A--CCTGG---------TTG---ATGGCTTAAAAC---TGCTTTGGTAATAT-T------TCA---GC---AGTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTG--CTTA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-AGA--GC-T-----CTTCAGAT---ACTGTGT--GTA---TA-G--TTGA--CCAA--GT--GACCACCAGTTTG-A-AT-GCT---AAC---T-GTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc-CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT--ATATTTTACTGTGCG-GT-----------TGA--CC-A--CT--G---------TTG-A-CTG
blockSeqs : CAT C AT CA G T A T T AT T A A C AA TGCTATGC AA A A TTTTC G CA CACATGAAAAATGAAGGGA T AA TG AT A C A CAGG GG ATT T T A GT T C GT GA A T CATG A CAGA TCAG TTTA GTAATTTG TT AC A CG GACCACCAGT A C GGCTTAA ACTC GT A . TGT TCA CAC A TA A T T TAT G CTA T TAGA GT A ACT T ATC T T C G TAGGC GTGC G G A AGCATGT AAT G A A CTG T AT AAATGCT TT G C T GTCCT A A T CA G A CTA AG GT A T T AGGACCGA C C TG CTTCA TT GCTAA T T AT T . A ACGGT TTAGATTTT A G C G A ACTTCGAG A TCTGA AT GA ATT CGGTGT G A CG C C . A TA TTT C G T C TT A C G A CATA CA TGTCAT ATGTGAA T T A AT A C T .
blockSeqs : . C . . . G . . . . . . . . . TGACC A G A . . . GTTGGAACGTCAAA G A . . . . . CAGG . T . T A . . C . AA . T CATG G AC TCAG TTTA GTGTATA . . . . TGG . . GATT TC . . . AT . T A AT A . . TA . A . . . . . . A . . C . TG TGC G . . . . . G A CT . . TGG T . C . G A A C CA A . CT . . G T T AG C . . . C A A . . . . G AG . A G . . . ATCTTCA A TTG . TT . . . . . C . . . TA TG C G . C TT A C G A . CA . AT T T A AT . C . .
blockSeqs : . C . . . . . . . . . . . . . TACC A A A . . . GAAATGAGGGA A A . . . . . . . G . T . . . . . AA . . CAG . CG TCAG T TGTGCAT . . . . AG . . GGCT TG . . . . . A A G T . . TT . A . . . . . . . . . A . . G . . . . . . A A C . . GA . . . . T G T . C . . . . . . . G . . . . T T A . . . . A CG . T G . . . TTTC G TT . GT . . . . . . . . . TA TT . G . C CT A C G A . CA . AT A . . AT . . .
blockSeqs : . C . . . . . . . . . . . . . TAC A A A . . . GATGAGGGA G A . . . . . . . T . . . . . . . AA . . TA . AC TCAG T GGTATA . . . . AG . . GCT T . . . . . T A T A . . A . . . . . . . . . . . C . . G . . . . . . A A G . . AA . . . . . . . . A . . C . . . . . . G . . . . . . . C TG . T . . . . . . . TT . G . C T A C G A . CA . . A . . .
blockSeqs : . C . . . . . . . . . . . . . CC A A A . . . GAAAA A A . . . . . . . A . . . . . . . AA . . AT . C TCAT A GTATA . . . . AT . . GCT T . . . . . T A A . . . . . . . . . . . . . . . . . . T . . AA . . . . . . . . . . . T . . . . . G . . . . .
blockSeqs : . C . . . . . . . . . . . . . CC . A A . . . GAAAA G A . . . . . . . T . . . . . . . GT . . CA . C TTAT T GTATA . . . . AG . . GCT T . . . . . T A . . . . . . . A . . T . . . . . G .
blockSeqs : . . . . . . . . . . . . . . . AC . . . . . . TGAAA A T . . . . . . . T . . . . . . . AG . . AT . C TCAG A AGTAT . . . . G . . GCT T . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . GAAAA A A . . . . . . . G . . . . . . . AA . . CA . T TCAG A GTATA . . . . G . . .
blockSeqs : . . . . GAAAA A A . . . . . . . T . . . . . . . GT . . AT . C TAT T GGT . . . . G . .
blockSeqs : A . . . . . . . . T . . . . . . . A . . CA . T TCT A GCA . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . A . . AT . C CTA A GCA . . . . G . .
blockSeqs : . . . . . . G . . CA . C CT T GCA . . . . G . .
blockSeqs : . . . . . . A . . AA . C CA A GGT . . . . G . .
blockSeqs : . . . . . . A . . TA . A AT A TCA . . . . . .
blockSeqs : . . . . . . A . . GA . . AT . GGT . . . .
blockSeqs : . . . A . . A . .
blockSeqCons : ** TCAG A*** GGTACA***** GCT**** ****** T** A** G***** CTTC****** TT* G* AT
originalCons : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCANAT---ACTGTGTG-GTA---TA-G--TTGA--CC-A--CT--G---------TTG-A-ATGGCT---AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAA--G--CTTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCA-T-TTC--GTTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAAC-TTTTTTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
finalCons : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCAGATA---CTGTGTGGTACA-----G--TTGA--CC-A--CT--G---------TTG-A-ATGCT----AAC---T-CTTTG--AAAAT-T------TCA---GC---AGTTGT--CCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAAG-----TTAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAA-ATGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAGCCCTTC------TTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTT-TTTTCTGTG-CG-TTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTCAACAATGTGGTCAACTGCGCAGCGGAGGGAGTGGAAAAAAGTGCAGAAATTAAAGGAGTTATCAACAATGGTTCAACTGCACGAGAAAAAGAAGAAGAAAATAGGAGTAATTCAACAAGTGGTCAACTGCATAGGAAGAGA
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT
Alignments
lowQualScore : 222222222 11111 2222222222222222222222222222222222 1111 1111 22222222 111111111111 222222222222222 1111111 111 111 111 1111 11 222222222 22222 2222222222 2222222 111 111 11111111 11 1 22222 1 111 11 11 1 33333333 1 11 22222 11 11111 11 11111 333333333 4444444444 2222 11 111 222222 11 1 1 1 1 1111 111111 3333333 1 1 1 1 1
lowQualScore : 777 1 66 66 4 8 4 5 5 66 5 5 4 4 66 888888888 44 3 5 00000 4 55 3333333333333333333333333333333333 1 44 44 44 3 3 3 4444 99 777 3 8 5 33 2 5 33 99 2 2 9999 5 99999 3333 4 3 44444444 2 2 2 555555555555 2 33 3 777777777777777 3333333 4 333 777 66 777 3 555 3 6 6 999 8 111 8 7777 11 8 0 444444444 8 6 2 6 55555 7777777777 8 8 1111111 111 5 0 7 1 666 5 77 55555555 33 6 3 6 22222 3 1 6 55 0 6 7 666 33 33 9 3 0 3 22222222 2 0 33 00000 11 88888 6 8 11 8 8 0 1 44444 0 222222222 6 3 8 8 8 0 0 8 5555555555 1 6666 11 66 444 0 0 333333 8 8 11 0 2 0 0 3 88 88 6 3 77 6 4 55 5 4 4 5 2222 55 666666 5555555 7 1 3 77 0 6 0 3
lowQualScore : ... . .. .. . . . . . .. . . . . .. ......... .. . . ..... . .. .................................. . .. .. .. . . . .... .. ... . . . .. . . .. .. . . .... . ..... .... . . ........ . . . ............ . .. . ............... ....... . ... ... .. ... . ... . . . ... . ... . .... .. . . ......... . . . . ..... .......... . . ....... ... . . . . ... . .. ........ .. . . . ..... . . . .. . . . ... .. .. . . . . ........ . . .. ..... .. ..... . . .. . . . . ..... . ......... . . . . . . . . .......... . .... .. .. ... . . ...... . . .. . . . . . .. .. . . .. . . .. . . . . .... .. ...... ....... . . . .. . . . .
lowQualScore : 888 1 11 11 4 9 4 0 0 99 0 0 4 4 11 888888888 11 6 7 00000 0 55 0000000000000000000000000000000000 0 77 66 66 3 3 3 2222 22 888 3 0 3 77 5 0 44 88 5 5 8888 0 22222 0000 5 3 22222222 2 2 2 999999999999 4 44 6 888888888888888 7777777 4 999 888 11 111 2 333 5 7 7 888 0 888 0 0000 00 0 8 666666666 0 7 5 7 88888 6666666666 0 0 7777777 777 7 6 1 4 666 7 99 44444444 66 7 3 7 00000 8 0 0 88 8 5 3 000 88 88 0 2 2 2 00000000 5 0 88 00000 88 00000 0 0 00 0 0 8 4 00000 8 000000000 0 2 0 0 0 8 8 0 0000000000 4 6666 00 66 000 8 8 000000 0 0 00 8 5 0 0 3 88 88 7 3 77 7 3 11 0 3 3 0 1111 77 444444 2222222 8 3 3 99 0 5 0 3
consensus : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCAGATACTNTGTG-GTA---CAGTTG-ACC-AC-T--G---------TTG-A-ATG-CT-------AAC---T-CTTTG--AAAAT-TTCA---GC---A--GTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAAG---T---TAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAA-TGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAG-CCATCTTCG--TTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTT-TTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
Reference ( family-3262 ) : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAATT-AC----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCGGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-C---CTTCAGATACTGTGTG-GTA---CAGTTG-ACC-AC-T--G---------TTG-A-ATG-CT-------AAC---T-CTTTG--AAAAT-TTCA---GC---A--GTTG--TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAAG---T---TAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAGAGCGTGGT-GCGGCAGCCATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATTGTATTTTTCAAATTTAAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAA-TGTGATGGT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAG-CC--CTTC---TTGAGACT-TG-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATTTCTGTTCGC--GGATTGTTGTTGTTTACATT-GG-CATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTT-TTCTGTG-C-GTTGAA-CAACCCCGATTGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCGT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTA
gi|1 : TGGTGCATGGAACAGTAAGTCCACTTAAAGTGTCACTCATTGAC-CTT-TTCTGTG-CAATTGAG-CAACCCCGATTGTAACTTCTTTTGGAAGACTCGTTTTTGTGGCCAGCCATA----TATGCAT------ACTGTGCCGAAATTTGAA-------ACCAGCTAGATATATCGTCAT-TCCACAGG---AGTCTG-AATTTCTATTTAG-
gi|1 : -CGGT-TG---C-CA-C--TGAT--G-ACA--GC-T-C---CT-CACAT-TTTCGTG-G-----CGGTTG-ACC-AC-T--G---------TTA-A-Atatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgttGT-TG--AC-CA-TGTTGA---G-ATA--GCAT-C---CTT---ATTTTCCGTG-------CGGTTG-ACC-AC-T--G---------TTGAA-ATG-CTCCTAATAGAT---T-ATTT-------T-CTCT---GC---G--GTTG---CCACT-G-A-TGAcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|1 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctg------A---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AT-CA-T--T-AC-TG-AAT--GC-C-CAGACCTC-TATTCTCTCTG-------CAGTTG-ATC-AT-T------------TTG-A-Agcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatttcaaaatgatcaactgcagagagaatagaggtctgggcattcagtaatgatcaactgatttctcctgtatgcaaatgagttgaccgctccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|10 : tggtgcatggaacagtaagtccacttaaagtgtcactcattgaccttttctgtgcaattgagcaaccccgattgtaacttcttttggaagactcgtttttgtggccagccatatatgcatactgtgccgaaatttgaaaccagctagatatatcgtcattccacaggagtctgaatttctatttagtatggtggtcgtagtttttttttttttatttagtcaattcttgaatataaaaacttcaagactctaggtagatttgataagtacattataatgatcgttattagtagtaacgtgcaacaagtattcggtcacaaggggtcccggcgtgtttaaacgaacagcaaatagaaagtgaaacctgtctagtctttgtttatattgtcagaagagaaaaaatgaatcacatggtacaaaatataggaacgtttttaacagtggtcaaccgccacgaaaatgtgaggagctgtcatcagtggcaaccgcagagaaaataatctattaggagcatttcaacagtggtcaaccgcacggaaaataaggatgctatctcaacatggtcaacgcacaggcaatataggggcgttcaaagcattgtcaaacgctacagaaaataaaggggtatAA-----AGTGGAGTTCGAT-AT----AAATC-CAGAAGA--TA-AAAAATGTGATGGT-CG--ATTGCATAGA---------TAAGATAGC-A-GGTGC-GGAATTGGAG-CCATTTTCA--TTGAGACT--G-ATA--GGATTCAG---GATTTGGAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GGTCATGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCATTAACTTTTTTTCTGTGCC-GTTGAA-CAACCCCGA-TGTAGCTTCTTACGGAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGTGCCGAAATTTGAA-------ACCAGCTAGATCTAGCGTCAT-TCCACAGGATCAGTCccctcatttgcatgtgaaaaattaaaccaaggatcaaattttgattgtcaatgaatcatcaactgaatactcccattgaattctaatgtactttttttttgtatggat
gi|11 : tcATAAGAAAAAGTCTAG---TTGACCTCCATC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-CC--TGAAT--AC-----GCGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A----------CTGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TT-ACA--AC-T-C----TTCAGATACTGTAT--GTA---TAGTTG-ACC-AC-TA-G---------TTG-A-ATG-CT-------AAA---T-CTTTG--AAATT-TTCA---GC---A--ATTG--TCCACTAG-G-TGAATA-C-TTGA-TCTTAAATGACA-AA--AGGA-GTTGACTGTT----GT--TA-AACG---C-TA--TGA-C-TTCATCAT-TCT-----AGAAG---T---
gi|12 : ccAAGACTCGTTTTTGTGGCCAGACATACATATATGCATTGTCATAATGTGCCGAAATGTGAAATGTGAAACCAGCTAGATCTAGCGTCAT-TCTACAGGAgctagaaaataaaaataatggaatttttactcgt
gi|13 : TGTCA-CT--GTGAA--GATT-TATTTTTAAAATTTGACA------ACGCAGT-TGTT--GAA-----AGTGGAATTTGAC-AT----AATTC-CAGAGGA--TATAAAA-TGTGA-----AG--ACTGCATAGA---------CAAA--AGC-A-----CAGGGAT---AG-C------------GAAACT-T---TA--GGAGACAG---GG-CTGGAGCGGTGTCCGTC-CCAT-AAATTACAGTTCGT--GGA---TTGTTATTTACATTCGA-TATAGTGTATAGTACA------------ATAGTGTCTCTCATTAA-TGGT-ATCTGTA-C-----AATCAGTCGCGATTATAGATTCTTCTGGACCACTCG-TTTTGTGGCCAGAC--A----TGCGCAT------AACGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcattcatacagtaacgtgcaaaaagtattcgttcacaatggcggcgtgttatgcaagtagaaagtgaccttgccttgaggtatttttgtattgtcaggaagtagaaaattttacaattagaaattgatcacatggtacat
gi|14 : -ATTG-ACAATCAATTGAC----CAT-TAA-----TTGACC-CTTGG--TTGAAT-----TT-TGTACATG-----G-----A----AATGAGGGA---------GCGGTCAA-CTCAT--T--TG-C-A-TA----CAGGA--GAA-ATCAGT-TG--AC-CA-T--TA-T-TG-AAT--GC-T-C---CTCTA--TTCTCTGTG-------CAGATG-ACC-AT-T--G---------TTG-A-ATA-CT-------------C-CTTT------AT-TTTATGTGC---A--GTTG--ACCACT-G-T-TGAATA-C-
gi|15 : ATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT---C----CACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--G--T-T---TTTCAGATACTGTGT--GTA---TAGTTG-ACC-AC-gaatcatcagctgaatactttcattgaattttcgt
gi|16 : ccc-CAATTGAC-GCTTGG--TTGAAT----------TT--TTCACATG-----A----AA------AATGAAGGGAGCGGTCA--TTCAT--T--TG-C-A-TACAGGAA--A--AAA-ATCAAT-TG--AC-CA-T--T-GT-TG-AAT--AC-T-C---CTT
gi|17 : -GTG---CAGTTGAACC-AT-T--G---------TTG-A------T-------AAC---TCCTTT-----AAT-TTCT---GC---ACTTTTT--TCCACTatggtcaattgattgtccatgaatcatcaaactgaatactcacattgaattttaatgtatttttttttcgtatgggca
gi|17 : ttcaacaatgtggtcaactgcgcagcggagggTG---CAGTTG-ACC-ACTT--G---------TTG-A-ATgagaaaaagaagaagaaaataggagtaattcaacaagtggtcaactgcataggaagaga
gi|2 : ttcaacaatgtggtcaactgcgcagcggagggagtggaaaaaagtgcagaaattaaaggagttatcaacaatggttcaactgcacgagaaaaagaagaagaaaataggagtaATACGAAAAAGTCTAG---TTGACCTTCAAC--TAGTCATC--AAC-TAG-CTAGT-C-A--ACTA-A-CT-ATTG-AC--TGACTT-AC----CACGTAAAACAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-ACA--GC-T-T---TTTCAGATACTGTGTG-GTA---TAGTTG-ACC-AC-TA-G---------TTG-A-ATGATT-------AAC---T-CTTTG--AAAAT-TTCA---GC---A--GTT---TCCACTAG-A-TGAATA-C-TTTA-TCTTAAATGAAA-AA--AGGA-GTTGACTATT----GT--TG-AATG---C-TA--TGA-C-TTCATCAT-TCT-----AGAAGGTCT---TAGTGCTC-CG-AC-------TTA---GA-AAAATTGAGAGC--TGTCCACT-AGG--TG-AA-----TACTTG--AT-CTT-A-AATG----GAAAAAAGCGTGGT-GCGGCAGCGATGTTTGGACAGGACGGCATTGTCT-TT--GTGTG--GATT-TATTTTTCAAA---AAAG------ACGCAGT-TGTT--GAA-----AGTGGAGTTCGAT-AT----TAATC-AAGAAGA--AA-AAAA-TGTGATGAT-CG--ATTGCATAGA---------TAAGGTAGC-A-GGTGC-GGAATTGGAG-CCATCTTCA--TTGAAACTCTGAATG--GGTTTCAG---AGTTT-GAG------CCGTC-CGAG-AAATCTCTGTTCGC--GGATTGTTGTTGTTTACATT-GA-CATGGTGCATGGAACAGAAAGTCTAATTAAAGTGTCACTCATTAAC--TT-TTCTGTACC-GTTGAA-CAACCCCGATTGTAGCTTCTTAC-GAAGACTCGTTTTTGTGGCCAGACATA----TATGCAT------AATGT-CCGAAATTTGAA-------ACCAGCTAGA------------TCCACAGG---AGTCTGAAGTTTCTA-TTAGTAGGTGGTGTAtaggaagaga
gi|20 : -TTCATCAT-TCG-----A-AAG---TGCTTAGTGCTC-CG-AC-------TTA---GA-AAAAATGAGAGC--TGTCCACT-AGG--TG-GA-----TACTTG--AT-CTT-A-AAT-----GAAAAGAGTGTGGT-GCGGCAGCCATGTTTGGACAGGACG
gi|23 : -CAATTGACC-CTTGG--TTGAATTTTTCAC--ATG--CT-----G-----ATGAGGG------A---------GCGGTCAA-CTCAT--T--TG-C-A-TC----CA--A--TAG-A-
gi|24 : gattATACGAAAAAGTCTAG---TTGAC-------------CATC--AAC-TAG-TT-GT-C-A--ACTA-A-CT-AGTG-AC--TGAA-T-A-----CGCGTAAA-CAat
gi|25 : cccc-CA-T--TA-T-TG-AAT--GC-T-C---CT-CA-ATTCTCTGTG-------CAGTTG-ACC-AT-T--G---------TTG-A-AT
gi|26 : tATGCGAAAAAGTCTAG---TTTACCGTCAAC--TAGTCATC--AAC-TAG-CT-
gi|28 : ccc-GTG---CAGTTG-ACC-AT-T--G---------TTG-A-ATA-CT-------------T-CTTT
gi|3 : aaatAAAAGTCTAG---TTGAC-GTCAAC--TAGTCATC--AAC-AAG--T-GT-T-C--ACTA-AACT-ATTA-AT--TGAAT---C----CA-GTA---CAGT--ACCA-TTGGAGTTAAAT-----AC-TATT--TT-----T-----G----AA------A---------GCAGTCA---TGGT--T--TG-CCA-TA----AA--A----A-A--AGT-TA--AC-CA-T--TA-T-TG-A-A--GT-T------TTCAG-TACTG-GTGTGTA---TAGTTG-AGC--T-T--G---------TTG-A--TG-CT-------AAT---T-CTTTG--AAA-T-TTCA---G----A--GTTG--TCC-CTAG---TGA-TA-C-TT-A-T-TTAAATGAAA-GA---GGA-GTTGACTATT----GTGTTG-A-TG---C-T---T-A-C-TTCAT-AT-TGT-----AGAGG---T---TA-TGCTC--G-AC-------TTA---GAGAAAATTG-GAG---TGT----T-AGG--TG-A------TACTTGTTAT-CTT-A-AATG----AA------CGTGGTTGCG-CAGCCATGTTTGG-CAG-ACGGTATTGT---TT--GTGTG--GGTTAGATTTTTTCAATTTAA-G------A-GCAGT-TTGT--GAACTTCAAGTGGGTTCCGATTAT----CA-TC-CAGAAGA--TA-AAAA-TGTGATGGT--G--AT---GTAGA---------TA-GGTAGCCA-GGTGC-GGAATTGGAG-CC--TTTC---TTGAGACT--G-ATA--GGAT--AG---GATTTGG-G------CCGTC--GAG-AAATTCTTGTTCGC--GGATTGTTGTTGTTTA-ATT-GG-CAGGGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--ACTTTT-TTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAagagaa
gi|30 : agCCCGACTGTAGCTTCTTACGGAAGACTCGTTTTTtt
gi|4 : AAAAAGTCTAG----TGACCGTC------------C--AACGTAGTCT-GT-CTAATACTA-C-CTAATTG-AC--TG
gi|4 : TGGAATTAATT-----ACGTATT--TT-----GTTGGAACGTCAA------A---------GCAGTCAAACTGGT--TATTGAC-AATA----AA--AATTAA-A-CAGTATG-----CA-T--TAAT-TG-ACA--GC-T-C---TTTCATATACTGGTTA-GTA---T-GATG-ACC-AC-T--AT--------TTG-ACATG-CT-------AACACTC-CTTTG--GAAATATTCAAT-GCTCAA--TTTGCACCCACTAGTA-TGATTA-CTTTTT-TCTTAAATGAAA-AACTAGGA-GGTGACTATTTAGAAT--TGAAATG---CTTATCTGATC-TTCATAATGTCCTG---AGAAG---T---GCGTGGTCGCG-GCAGCATGTTTG---GA-CAGAATG---GCT-TGTCTATT-AGG--TGTGG-----TGATTGT-AT-TTTCA-AATT----TAAAGGACC---GA-AC-GCAGTC-TGTTTGGAAAGtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttcttaaatgaaaaactaggaggtgactatttagaattgaaatgcttatctgatcttcataatgtcctgagaagtgcgtggtcgcggcagcatgtttggacagaatggcttgtctattaggtgtggtgattgtattttcaaatttaaaggaccgaacgcagtctgtttggaaagtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|4 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttaC-------TTAAATGA-AAAACTAGGAGG--TGACTATTTAGAATTG-AAATGCTTATCTG--AT-CTTCATAATGTCCTGAGAAGTGCGTGGTCGCGGCAGC-ATGTTTGGACAGAATGGC-TTGTCTATTAGGTGTGGTGATTGTA-TTTTCAAATTTAAAGGACCGAACGCAGTCTGTTTGGAA-----AGTAGAGTTCGA--ATGCTAAAATCTTAGAAGAATTA-AAAA-ATTGATGATACGGTATTGCATAAATTAGATTTTTATGGTAGC-AGGGTGC-GGA--TGGAGACA--CTTCGAGTTGACACT-TG-GTAATGGAGTCAGATTGATTTGGAG------CCGTCGCCAGAAAATTTGTTTTCGCCGGAATTGtagagttcgaatgctaaaatcttagaagaattaaaaaattgatgatacggtattgcataaattagatttttatggtagcagggtgcggatggagacacttcgagttgacacttggtaatggagtcagattgatttggagccgtcgccagaaaatttgttttcgccggaattgcgttttt
gi|5 : aaaaagtctagtgaccgtccaacgtagtctgtctaatactacctaattgactgtcagggagctacgcgtcagagaacagctaatgacactatgacgtcataattcgtacaaatgtggaaaatttatggaattaattacgtattttgttggaacgtcaaagcagtcaaactggttattgacaataaaaattaaacagtatgcattaattgacagctctttcatatactggttagtatgatgaccactatttgacatgctaacactcctttggaaatattcaatgctcaatttgcacccactagtatgattacttttttGTGCATGGAACAG-AAGTCTACTTAAAGTGTCACTCAT--ACTTTT-TTCTGTG-C-GTTGAA-CAACCC-GAT-GT-GCTT-TTACG--AGACTCGTTTTTGTGGCC-GACATA----TATG-GT------AATGTGCCGAAATTTGAAAT-----ACCAGCTAGGACTAGCG-CATATCCACAGGATCAGTCTG-AGTTTCTACTTAG-AGGT-GTGTAcgttttt
gi|6 : -CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT----ATATTTTACT-GTG---CGGTTG-ACC-AC-T--G---------TTG-A-ttttttcttttttagctcattttgaaaaaatcagactcctgtggtcattataagtaacatgcaaaaagtattcatcacaagcgggtgtttgacgaaaagcaatcagaagtcttgcctgagtatttttgtatttgttcaggaagtagaaaattttaaaattgaaattgatcacatggttacataaattattgagcgttcaacaggggtcaaccgccaaagcatagaggttgttcaacagtgtcacgcacagaaaatgaggagcgttcaacgtggaacgcacagaaatagaggagctctcaacagttggtcaaccgcacagaaaatag
gi|6 : TCAT-CTG-------TG-C-A-TACAGGAG--A--GAA-A-TCAT-TA--AC-CA-T--TA-T-TG-ATA--GCGT-C---CTCTA-AT-CTCTGT---T----CAGTTG-ACC-AT-TA-G---------TTG-ccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttacaactaatggtcaactgaacagagattagaggacgctatcaataatggttaatgatttctctcctgtatgcacagatgagttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|7 : tcaacagtggtcaaccgcacagtaaaatataggtagccatgtcaaacaagtggtcaaccgccatagacagcttatatggagcgtttcaaacagtggttcaacccgcacagaaaatagtgcgttcacacacagtggttatccaactcgataatagaagtaataggagcttcaaacagtggatcaaaaagtccgcacctagggaacattttagccgaaaagccattcaacagcgtgggttcaaaacatgcacagcaagaaaataaaacgagatttaACGAAAAAGTCTAGCATTTGACCGTCAACATTAGTCATTCAAAC-TAGGCT-GTTC-A--ACTATA-CT---TGCAC--TGAATT-GCTATGCACGTAAA-CAGTTGACTACTTGGAGTTA--------AT-TATT--TT-----G-----A----AA------A---------GCAGTCAA-C-GGTTGT--TG-C-A-TA----AA--A--TAATA-CAGTATGGTACTCA-T----ATATGTACAG-GC-T-A---TTTCAGATACTGTGT--GTAATTTGATTG-ACC-AC-CTGG---------TTG-A-TGG-CTTAA----AAC---TGCTTTGGTAATAT-TTCA---GC---A--GTTG--TCCACTAG-ATTGAATATC-TTTATTCTTAATTTAAAGAA--AGGATGTTGACTATT----GT--TG-AATGACTC-T---TGA-CTTTCATCAT-TCTTAGGCAGAAGTGCT---TA-TGCTC-CGAAC-------TTA---GA-AAAATTGAG-GCTGTGTCCACT-AGG--TG-AA-----TACTTG--ATGCTT-A-gttgcgaccaaaagctctccatgttgcatagtcaaagattcacaagggtcaagagttgatgcgtcagttggatgtggctaagctgcacatcattaaatgaactcactccccattgaattctaatgtaactattctgttcggatg
gi|8 : cataaaATACGAAAAAGTCTAG---TTGACCGTCAAC--TAGTCATC--AAC-TAG-CT-GT-C-A--ACTA-A-CT-ATTG-AC--TGAAT--AC-----ACGTAAA-CAGTTGACCACTTGGAGTTAAAT-----AC-TATT--TT-----G-----A----AA------A---------GCAGTCAA-CTGGT--T--TG-C-A-TA----AA--A--TAA-A-CAGT-TG--AC-CA-T--TAAT-TG-AGA--GC-T-----CTTCAGATACTGTGT--GTA---TAGTTG-ACCAAG-T--GACCACCAGTTTG-A-ATG-CT-------AAC---T-GTTTG--AAAAT-TTCA---GC---A--GTTG--TCCACTA
gi|8 : ccA-AATATTGAGAGT--TGTCCACT-GGG--TG-AA-----TACTTG--Aaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaatattgagagttgtccactgggtgaatacttga
gi|9 : ccatacgaaaaagtctagttgaccgtcaactagtcatcaactagctgtcaactaactattgactgaatacacgtaaacagttgaccacttggagttaaatactattttgaaaagcagtcaactggtttgcataaaataaacagttgaccattaattgagagctcttcagatactgtgtgtatagttgaccaagtgaccaccagtttgaatgctaactgtttgaaaatttcagcagttgtccactaaggtgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc-CGGT-TG--AC-CACT--TGTT-TG-ACATGGC-TAC---CT----ATATTTTACT-GTG---CGGTTG-ACC-AC-T--G---------TTG-A-CTG-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ACAGTAACGTGCAATAAGTATTCGGTCACACGTGCACATAATATTCGCTCACATAGCTGGCGTGTTTACGTTTTGAAACACGAAAGCAAATAGAAAGTGACTTGCCGCTGAGTATTTTTGTATTGTCAGGAAGGTAGAAA
Unaligned ( gi|19 ): TCATCACAGACACATGCAATAAATATTCGGTTACAAATGGTTTGCATTTGAAAGGGATAGAAATAAGAAAGTGGCCTTTTCCTGGCTTTTTTTGTGCCGTGAGTGAGTACAAATCTTAAAATTAGAAATT
Unaligned ( gi|21 ): AAAAAATTTTTCAACAAGGGGAGTGGTCAATTGGATAGCTAATGGGTTAATTGATTGTCAATGAAATCAAAATCAACTGAATACTCCCATTGA
Unaligned ( gi|22 ): GCAAATTAGAAGTGACCCTTGCCCTTGAGCCATTTTCTGTATTGTCAGGAACTAGAAAATTTTAAAATTAGAAATTTATTCACATG
Unaligned ( gi|27 ): TTTGTATTGTCAGGAAGTAGAAATTTTTAAAATTAGAAATTCAT
Unaligned ( gi|29 ): TTTCTTCTGTATGCAAATGAGTCGACCGCTCCTTCAT