lowQualScore : 1111111111111111111 1111111111111111111
lowQualScore : 4444444444444444444444444444444444444 333333333333 111111 11 222222222222222222 111 2 1 222 1 111111 1 1111 333333333 11 22222 11 1 1 2222222 55555555555555 22222 1 2222 8888888888 222 1 1 3333333333333333333 4 5555555555555 3333333333 4 222 9999999999999999999 4 11 1
lowQualScore : 3 5 2 555 2 8888888888888888888888888888888888888 66 5 777777777777 999 2 999999 3 3 3 9 0 00 0 6 5 222222222222222222 2 5 000 5 1 0 5 444 0 777777 0 2222 333333333 6 88 7 0 11111 88 0 0 7777777 5 4 3 55 44 44 11111111111111 44444 0 3 4 3333 9 7 0000000000 666 5 5 4 9999999999999999999 6 0 6 6 0000000000000 0 7 8 7 3333333333 0 4 55 999 4 2222222222222222222 0 22 6 5 6
lowQualScore : . . . ... . ..................................... .. . ............ ... . ...... . . . . . .. . . . .................. . . ... . . . . ... . ...... . .... ......... . .. . . ..... .. . . ....... . . . .. .. .. .............. ..... . . . .... . . .......... ... . . . ................... . . . . ............. . . . . .......... . . .. ... . ................... . .. . . .
lowQualScore : 3 7 4 000 9 6666666666666666666666666666666666666 33 3 999999999999 555 5 111111 3 2 3 0 1 33 8 7 0 666666666666666666 5 0 888 0 6 0 0 555 0 000000 0 0000 333333333 7 33 3 7 33333 33 0 0 5555555 6 2 2 88 22 55 33333333333333 55555 7 3 7 0000 0 3 3333333333 777 0 0 0 0000000000000000000 0 0 0 0 0000000000000 7 3 3 3 0000000000 0 0 00 555 0 5555555555555555555 0 00 0 0 0
consensus : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-A-TAAAT------CT-CA-N-----ACG--GAA--T-ACAAA--N---C-A---AGAGNNGGGCAAACACNGAC-CC-CTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGA-CCGG--TCACAC-C-G-CCGTGAG-C-CC-ATNGT-C----TTGATCAG--GTAAACAGAGTAATCCGTAGTCAAATCA-TGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGTATTTTGATCCAACGACAGNTCGTATTG-CAG-ACTAA---A-TCGTTAT-AACGACCATATAATTTNC--GNAATGTTGACTTTAAACA-TGG-A---TGTT-GGAACCCCTGCAACANCAA--TGTGTTTATCAGCAGCCTGCCCCGATTTAAAAACTGATCATACAGCAGAAACAAGTCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGNTGATNNAATGTTAGCNAC-ACAAATTATGAG------ACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
Reference ( gi|1 ) : AAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-G-TAAGT------CT-CA-A-----ATA--GAA--T-ACAAA--AA--C-A---AGAGTTGGGCAAACACGGAC-GC-CTGG-ACACACCAGAGGTGGGATC-AGGTG-C------CT--AGG---A-GGA-GTAAGC-A-TC-CCCATGTTGA-CCGA--TCACAC-C-G-CCGTGAG-C-CC-ATAGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGCGTGAAAA--AAGGC-TTAA-CAATG-GCTAATGAAACACATCAGACAGCATTTTGACTCAATGGTAGGTCATATTGTTAA-ACTAA---AATCGTTAT-AACGACCATATAATTTAC--GAAATATTGACTTTAAAC--TG--A---TGTTTGAAACCCCTGCAACAACAACCTGTTTTTGTAAGTAACCTGCCTCGATT-AAAAGCTGGTCATACGGCAG-A-CAAGCCTCTTGCATATCGAATAAGTTGAGAGACATACAACACCATAATGCAGGTGATGATGGAATATTGGCTACAATAAATTATGGGAGGTTGACGATTGGAGAAGCTGAAATTGTCCTGTTTGTCATAAAGTTGAGTAGTTAGTTTACCTTTAATGTCAATGTTAAAAAAAATACCAAGTACAAGACATATCAAATGAAATTAAAAGTGCATAAATGTTAATTACATCTCAAAGATAAGGAAATATAA
gi|3 : AAGATAA-CGAATAGTG-ATTA---A-TCT-----C-A-T-----------T-CA-T-----ACG--GAA--T-ACAAA------CTA---AGAGTTGGGCAAACACAGAC-TC-ATGG-ATATACCAGAGGCGGGATC-AGGTG-C------CT--AAG---A-GCA-GTAAGC-A-TC-CCC-TATTGA-CCAG--TTACACTC-C-TCTTGAG-C-CCTATA-T-CTTTTTTGATCAG--CT-AACAGAGTTATTTGTAGTC
gi|12 : gaaaaggtgAAGATAA-TAAATAGTG-ATTA---A-TCT-----C-A--AA--------CT-CATACCGGTATAACGAA--T-ACATA--T---T-A---AGTGATGAACAAGCACGGAC-TC-CTGG-ATATATGAGAGGTGATATC-Atatgaaacccgtcagacagtatgtgacccaatgacaggttgattgtcagtactagattg
gi|24 : aaaacgAAGATAA-CGAACATTG-AACA---T-TCT-----C-A-TAAAC------CT----A-----ATA--GAAT-T-ACAAA--GC--C-A---AG
gi|19 : gAATATAA-TGAACAGTG-ATTA---A-TCT-----A-A-AAAAA------AT-CA-T-----ATATGGAA--T-AC-AA--AT--T-G---AGAGATGGGCAAg
gi|16 : atgacaataaagatgAACATAT-CGAATAGTG-ATAA---A-TTT-----T-A-TCAAT------AT-CA--------TA---AA--T-A--AA--AA--C-ATTGAACGTATGGAAAACACTAAC-TT-C-AG-ATACACCAGAGGAGGAACC-Acaaaga
gi|23 : gAAGATAA-CGAACGGTG-ACCA---G-TCT-----C-ATTAAAT----------A-C-----GTG--GAA--T-ACAAA--
gi|14 : acgcaaaagttAAGACAA-CAAAAAATG-ATCA---A-TTA-----A-T-TAAGT------GTACAGA-----ATT--GAA--T---GAG--AG--C-A---AGATATGCACAAAC-CAA-------TGG-ACGCACCAAAGATTTGACC-AGGtgaag
gi|28 : atgaaaaattgAAGATAA-CAAATAGCT-ACCA---A-TCA-----T-A-TAAAT------CC-TA-C-----ACG--GAA--T-ACA
gi|4 : acgtgAGATAAACTAACAGTG-ACCA---AATCT-----C-G-AATGT------CC-CA-A-----ATA--GAACCT-ACTAA--C---C-A---AGA--TGG-CAAACTCG-AT-CC-CTGG-GCACACAAAAGG---GA-C-AGTAG-CG-----CT--AGGC--A-GGACGTAAGC-AATC-CCC-TGT-AA-CTG---TCACAC-C-G-C-GTGAAAC-TC-ATTGTTC----TTGATCAG--GTAAACAGAGCAATCCGCAGTCATATCAGTGTATGATAA--AATGCTTTAACCAACT-GC-AATGAAAC-CATCAGACAG
gi|21 : gaacAGATAA-CAAACAGTG-ATCA---A-TCA-----C-A-TAAGT------TC-AA-A-----ACG--GAA--T-ACAAACTAAATT-A---AATATTGGGCAAat
gi|8 : aacgtggAAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-G-TATAT------CT-CC-T-----ATAA-GAA--TTACAAA--T---C-T---AGAGAAGGGCAAACTCC--C-GC-CGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGA-
gi|7 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-G-TATAT------CT-CC-T-----ATAA-GAA--TTACAAA--T---C-T---AGAGAAGGGCAAACTCC--C-GC-CGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGA-tttgagtcattatcccaccgattgaaccc
gi|15 : ACA-TG-ATCATATA-TCC-----CCA-TACAT------CT-TA-C-----ACG--AAA--T-ACAAA--T---T-A---AGA--TG---AATTACAGAC-CC-CTGG-ATATGCCAAAGGTGGGATtttgagtcattatcccaccgattgaaccc
gi|2 : gaaaacgatgaaggattCAGTG-ATCA---A-TTT-----C-A-TACATGTATACCT-TA-T-----ACG--GAA--T-GCAAA--G---C-A---AGATTCGGGCAGATAAGGAT-CC-CTGC-ATATACCAGAGGTGGAATC-AGGCG-C------CT--AGG---T-GGA-GTAAGC-A-TT-CTC-TGTTGA-CCg
gi|18 : aaatcactatataaagaacggctttacaatttgcatgaaacacgtcagaacgaattttatccagttgtagattctattggctaatttaattgttataacgaccataacatttgcaaaatgttgattttaaacgagactgttagaacctctgcaacatcaatgtgtttatcagcagcctgatcatacgAA--T-GCAAA--AT--T-A---AGAGTAGAGCAAACACCGAC-CC-CTGG-AT----CAAAGGTCGGATT-AGGTG-C------TT--ATG---G-GGA-ATAAGC-A-TC-CTC-TGTTAA-CC
gi|27 : ---AGAGTGGAGCAAACACTGACTGCAC--G-ATATACCAGAAGAAGGATC-AGGT
gi|11 : C-CTGGGATATAACAGAGA--GGTTC--GGTGTC------CTTCACGTTAA-GTA-GTAAGCAA-TC-CCC-TGTGGACCCGAGTTCACAC-CTGTTCGTAAA-C-TC-ACTGT-C----TT-ATCAGCCGTAAACtc
gi|20 : cACCAGAGTTGGGA-C-AGGTA-CATGAATCT--AAA---A-G-A-GTAAGC-T-TTTCCCA-GT-GA-CCAG--TCACAC-C-G-CCAGAAG-CTCT-ATAg
gi|5 : aGAGTAACCCGTAATAAAATCA--GTATGAAAAGAAAGGC-TGAA-TAATT-GGTA-TGAAATAAATCCGACAGTATTT-GATCTAACAACAG----CATTCACAA-ATTAA---A-TCATTAC-AACCACCATATAATATTC--AGATTGCTGACTTTAAACATTAGCA---TGTTTCGAACCtc
gi|2 : atatttatatacaagAAATCACTATATAAAGA--ACGGC-TTTA-CAATTTGC--ATGAAACACGTCAGAACGAATTTT-ATCCAGTTGTAGATTCTATTG-----GCTAATTTAATTGTTAT-AACGACCATAACATTTGC--AAAATGTTGATTTTAAAC---G--AGACTGTTAG-AACCTCTGCAACATCAA--TGTGTTTATCAGCAGCCTG
gi|13 : GC-GTAA-CAATG-ACTATTGAAACACATTA-ACAGCATTTTGATTCAATGTTAGTACATAATGatcatacgcagtgatcaatttcatacatgtataccttatacggaatgcaaagcaagattcgggcagataaggatccctgcatataccagaggtggaatcaggcgcctaggtggagtaagcattctctgttgacc
gi|3 : ATGAAACCCGTCAGACAGTA-TGTGACCCAATGACAGGTTG-ATTGTCAGTACTAG---Aaagtccttatgagtgtcgagatctacatttcaggaaattgtttact
gi|6 : gaaaaggtgaagataacgaatagtgattaatctcattcatacggaatacaaactaagagttgggcaaacacagactcatggatataccagaggcgggatcaggtgcctaagagcagtaagcatcccctattgaccagttacactcctcttgagccctatatcttttttgatcagctaacagagttatttgtagtctA---ATTTGCTATCAGTGATCATTTAGTTTACCTGCAATCTTT-CATTAAGCA-TGG-A---TATT-GAAACCC-TGCAA-AACAA-------TT----------TGCCCCGATTTAAAAACTGATCATAC-GCAGAA-CAAG-CTCCAGCAAA---AACAAA-TGAG----------CACCAT-ATGCAGGTGTTGATTTAATG-TAGCAAC-----ATTATGAGttg
gi|9 : AAACTGATCATACA-CAG-AACAA-TCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGATGATGGAATATT-GCTAC-ACAA--------------ACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
gi|31 : TCTTATATATCGATTAGGTTGAGAGACATACA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AGAGCGATCTAACCCTTGGTATCAAACACGTCAAATCTGATTCTATTTGAAATTGGATTATAATGCTTATTACTTACACAACGTTTGCGAAATATTTACTTTAAAAGAGACCGTTAAGAACC
Unaligned ( gi|17 ): AAGGTGAGGATAACGACAATAATCAAGGCATAACTCATAGAAAGAAATATAAACTTTTATAGTTAAACACAAACAGACCAAAGGACATACCAGAG
Unaligned ( gi|22 ): TGAAAAGGTGAAGATAACAGTCAATCTCATAAATCCGAATATTATCTACAAATTAAAAGGTTGGAAAACAC
Unaligned ( gi|25 ): ACATTGTTTACTTCGCCATTTTATATTCATCTATGTGAAAATCAATAATAAAAA
Unaligned ( gi|26 ): TTATTTATACCTACTTGTCAATTACCACGTGATATTAGTACAAAACGGAAAGGC
Unaligned ( gi|29 ): CATTGTTTATTTCGCCATTTTATATTACACAGTGATCACTTGTTAATAAA
Unaligned ( gi|30 ): CTTGACACATGGCTTAAAATAATCCAGATCATATAAATCAATC
Alignments
lowQualScore : 11111 11111111111 1111111111 111111 2222222 1 1 2222 1 11 11 1 2222 11 22 11 2222222 22222 4444444 1111 11 11 2222222222 33333333333333333 1 11 333 11 111 1 1 666666666666666666 2
lowQualScore : 3 5 2 555 2 88888 2 2 1 22222222222 1 3333333333 66 888888888 77 55 1 1 3 1 0 88 6 4 777777 66 0000000 4 888 4 8 1 2222 1 55 5 999 55 5 5 33 0 1111 2 33 3 11 99 3 11 0 6 6 2222222 3 0 2 0 0 333 00000 2222222 1 6 8 7777 3 1 8 1 11 1 11 0 3333333333 0 6 6 1 22222222222222222 5 99 000 99 3 3 2 777 0 1 22 88 2 1 666666666666666666 0 3
lowQualScore : . . . ... . ..... . . . ........... . .......... .. ......... .. .. . . . . . .. . . ...... .. ....... . ... . . . .... . .. . ... .. . . .. . .... . .. . .. .. . .. . . . ....... . . . . . ... ..... ....... . . . .... . . . . .. . .. . .......... . . . . ................. . .. ... .. . . . ... . . .. .. . . .................. . .
lowQualScore : 3 7 4 000 9 22222 9 9 7 11111111111 0 3333333333 33 777777777 66 11 6 2 3 7 1 44 7 4 222222 11 4444444 4 666 4 2 0 7777 4 77 7 666 77 7 7 55 0 2222 5 88 2 88 66 8 00 6 7 7 7777777 2 7 2 8 8 222 44444 0000000 4 7 0 0000 2 0 0 0 00 0 00 8 0000000000 2 7 7 0 00000000000000000 5 00 000 00 2 5 5 555 0 0 00 00 3 0 333333333333333333 0 0
consensus : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-A-TAAAT------CTC--ATAC--G------GAA--TACAAA-N-C-A---AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATT-GTCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTGGAACCCCTGCAACAACAA--TGT-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAG-AACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
Reference ( family-3204 ) : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-A-TAAAT------CTC--ANAC--G------GAA--TACAAA-N-C-A---AGAGNNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGTAATCCGTAGTCAAATCA-TGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGTATTTTGATCCAACGACAGNTCGTATT-G-CAG-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GNAA--TGTTGACTTTAAACAT--GGATG-TTGGAACCCCTGCAACANCAA--TGTGTTTATCAGCAGCCTGCCCCGATTTAAAAACTGATCATACAGCAGAAACAAGTCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGNTGATNNAATGTTAGCNAC-ACAAATTATGA------GACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
gi|1 : AAGATAA-CGAACAGTG-ATCA---A-TCT-----C-G-TAAGT------CTC--AAAT--A------GAA--TACAAA-AAC-A---AGAGTTGGGCAAACACGGACGCCTGG-ACACACCAGAGGTGGGATC-AGGTG-C------CT--AGG---A-GGA-GTAAGC-A-TC-CCCATGTTGACC---GATCA-CA--C-C-G-CCG--TGAG-CCC-ATAGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGCGTGAAAA--AAGGC-TTAA-CAATG-GCTAATGAAACACATCAGACAGCATTTTGACTCAATGGTAGGTCATATT-GTTAA-ACTAAAATCGTTAT-AA----CGACCATATA-ATTTAC--GAAA--TATTGACTTTAAAC-T---GATGTTTGAAACCCCTGCAACAACAACCTGTTTTTGTAAGTAACCTGCCTCGA-TTAAAAGCTGGTCATACGGCAG--ACAAGCCTCTTGCATATCGAATAAGTTGAGAGACATACAACACCATAATGCAGGTGATGATGGAATATTGGCTACAATAAATTATGGGAGGTTGACGATTGGAGAAGCTGAAATTGTCCTGTTTGTCATAAAGTTGAGTAGTTA
gi|11 : aCCCTGGGATATAACAGAGA--GGTTC--GGTGTC------CTTCACGTTAA-GTA-GTAAGCAA-TC-CCC-TGTGGACCCGAGTTCA-CA--C-CTGTTCG--TAAA-CTC-ACTGT-C----TT-ATCAGCCGTAAACgtttacctttaatgtcaatgttaaaaaaaataccaagtacaagacatatcaaatgaaattaaaagtgcataaatgttaattacatctcaaagataaggaaatataa
gi|12 : AAGATAA-TAAATAGTG-ATTA---A-TCT-----C-A---AA-------CTC--ATACCGGTATAACGAA--TACATA-T-T-A---AGTGATGAACAAGCACGGACTCCTGG-ATATATGAGAGGTGATATC-Ag
gi|13 : aaaacgGC-GTAA-CAATG-ACTATTGAAACACATTA-ACAGCATTTTGATTCAATGTTAGTACATAAT-G---------AAGTCCTTAT-GAGTGTCGA-GATCTACATTTCA--GGAAATTGTTTACT
gi|15 : ACA-TG-ATCATATA-TCC-----CCA-TACAT------CTT--ACAC--G------AAA--TACAAA-T-T-A---AGA--TG---AATTACAGACCCCTGG-ATATGCCAAAGGTGGGAT
gi|16 : gaaaacgatgaaggattAACATAT-CGAATAGTG-ATAA---A-TTT-----T-A-TCAAT------ATC--ATA-----------AA--TA-AAA-A-C-ATTGAACGTATGGAAAACACTAACTTC-AG-ATACACCAGAGGAGGAACC-Ag
gi|18 : gAA--TGCAAA-A-TTA---AGAGTAGAGCAAACACCGACCCCTGG-AT----CAAAGGTCGGATT-AGGTG-C------TT--ATG---G-GGA-ATAAGC-A-TC-CTC-TGTTAACC---
gi|19 : AATATAA-TGAACAGTG-ATTA---A-TCTAA---A-A-AAAAT------CAT--ATAT--G------GAA--TACAAA-T-T-G---AGAGATGGGCAA
gi|2 : atgacaataaagatgAAATCACTATATAAAGA--ACGGC-TTTA-CAATTTGC--ATGAAACACGTCAGAACGAATTTT-ATCCAGTTGTAGATTCTATTGG-CTA-ATT-TAATTGTTAT-AA----CGACCATAAC-ATTTGC--AAAA--TGTTGATTTTAAACGA--GACTG-TTAGAACCTCTGCAACATCAA--TGTGTTTATCAGCAGCCTGcaaaga
gi|2 : CAGTG-ATCA---A-TTT-----C-A-TACATGTATACCTT--ATAC--G------GAA--TGCAAA-G-C-A---AGATTCGGGCAGATAAGGATCCCTGC-ATATACCAGAGGTGGAATC-AGGCG-C------CT--AGG---T-GGA-GTAAGC-A-TT-CTC-TGTTGACC---atcatacgcagtgatcaatttcatacatgtataccttatacggaatgcaaagcaagattcgggcagataaggatccctgcatataccagaggtggaatcaggcgcctaggtggagtaagcattctctgttgacc
gi|20 : aaatcactatataaagaacggctttacaatttgcatgaaacacgtcagaacgaattttatccagttgtagattctattggctaatttaattgttataacgaccataacatttgcaaaatgttgattttaaacgagactgttagaacctctgcaacatcaatgtgtttatcagcagcctgatcatacgACCAGAGTTGGGA-C-AGGTA-CATGAATCT--A-A---A-AGA-GTAAGC-T-TTTCCCA-GT-GACC---AGTCA-CA--C-C-G-CCA--GAAG-CTC-
gi|21 : aAGATAA-CAAACAGTG-ATCA---A-TCA-----C-A-TAAGT------TCA--AAAC--G------GAA--TACAAA-C-T-A---Atatatc
gi|23 : aacgtggAAGATAA-CGAACGGTG-ACCA---G-TCT-----C-ATTAAAT-----------ACGT--G------GAA--TACAAA-T-G-A---AGattaaatattgggcaa
gi|24 : acgcaaaagttAAGATAA-CGAACATTG-AACA---T-TCT-----C-A-TAAAC------CTA--ATA----------GAAT-TACAAAGC-C-A---AG
gi|27 : g---AGAGTGGAGCAAACACTGACTGCACG-ATATACCAGAAGAAGGATC-AGGTg
gi|28 : AAGATAA-CAAATAGCT-ACCA---A-TCA-----T-A-TAAAT------CCT--ACAC--G------GAA--TACAtc
gi|3 : acgtgAAGATAA-CGAATAGTG-ATTA---A-TCT-----C-A-T-----------TC--ATAC--G------GAA--TACAAA-C-T-A---AGAGTTGGGCAAACACAGACTCATGG-ATATACCAGAGGCGGGATC-AGGTG-C------CT--AAG---A-GCA-GTAAGC-A-TC-CCC-TATTGACC---AGTTA-CA--CTC-C-TCT--TGAG-CCCTATA-T-CTTTTTTGATCAG--CT-AACAGAGTTATTTGTAGTC---------TATGAA------------------------------ACCCGTCAGACAGTA-TGTGACCCAATGACAGGTTG-ATT-GTCAGTACT-AGATTG
gi|31 : gaaaaggtgTCTTATATATCGATTAGGTTGAGAGACA---TACACTAT-ATGC
gi|4 : AGATAAACTAACAGTG-ACCA---AATCT-----C-G-AATGT------CCC--AAAT--A------GAACCTACTAA-C-C-A---AGAT---GGCAAACTC-GATCCCTGG-GCACACAAAAGG---GA-C-AGTAG-CG-----CT--AGGC--A-GGACGTAAGC-AATC-CCC-TGT--AAC---TGTCA-CA--C-C-G-C-G--TGAAACTC-ATTGTTC----TTGATCAG--GTAAACAGAGCAATCCGCAGTCATATCAGTGTATGATAA--AATGCTTTAACCAACT-GC-AATGAAAC-CATCAGACAG
gi|5 : gaacGAGTAACCCGTAATAAAATCA--GTATGAAAAGAAAGGC-TGAA-TAATT-GGTA-TGAAATAAATCCGACAGTATTT-GATCTAACAACAGC----ATTCA-CAA-ATT-AAATCATTAC-AA----CCACCATATA-ATATTC--AGAT--TGCTGACTTTAAACATTAGCATGTTTCGAACCat
gi|6 : atatttatatacaag-AATTTGCTATCAG----TGATCATTTA-GTTTACCTGCAA--TCTTT-CATTAAGCAT--GGATA-TTGAAACCC-TGCAA-AACAA--T---------------TTGCCCCGATTTAAAAACTGATCATAC-GCAG-AACAAG-CTCCAGCA--------AA---AACAAATG---AGCACCAT-ATGCAGGTGTTGATTTAATG-TAGCAAC-----ATTATGA------G
gi|7 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-G-TATAT------CTCCTATAA--G------AAT--TACAAA-T-C-T---AGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|8 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-G-TATAT------CTCCTATAA--G------AAT--TACAAA-T-C-T---AGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|9 : AAACTGATCATACA-CAGAA-CAA-TCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGATGATGGAATATT-GCTAC-ACAA--------------ACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AGAGCGATCTAACCCTTGGTATCAAACACGTCAAATCTGATTCTATTTGAAATTGGATTATAATGCTTATTACTTACACAACGTTTGCGAAATATTTACTTTAAAAGAGACCGTTAAGAACC
Unaligned ( gi|14 ): ATGAAAAATTGAAGACAACAAAAAATGATCAATTAATTAAGTGTACAGAATTGAATGAGAGCAAGATATGCACAAACCAATGGACGCACCAAAGATTTGACCAGG
Unaligned ( gi|17 ): AAGGTGAGGATAACGACAATAATCAAGGCATAACTCATAGAAAGAAATATAAACTTTTATAGTTAAACACAAACAGACCAAAGGACATACCAGAG
Unaligned ( gi|22 ): TGAAAAGGTGAAGATAACAGTCAATCTCATAAATCCGAATATTATCTACAAATTAAAAGGTTGGAAAACAC
Unaligned ( gi|25 ): ACATTGTTTACTTCGCCATTTTATATTCATCTATGTGAAAATCAATAATAAAAA
Unaligned ( gi|26 ): TTATTTATACCTACTTGTCAATTACCACGTGATATTAGTACAAAACGGAAAGGC
Unaligned ( gi|29 ): CATTGTTTATTTCGCCATTTTATATTACACAGTGATCACTTGTTAATAAA
Unaligned ( gi|30 ): CTTGACACATGGCTTAAAATAATCCAGATCATATAAATCAATC
Alignments
lowQualScore : 11111111111111111111111111 1111111111 111111 2222222 1 1 2222 1 11 11 1 2222 11 11 1 22222 11111 1111 11 11 222222 777777777777777777 1 11 11 1111 1 1 666666666666666666 1
lowQualScore : 3 5 2 555 2 77777777777777777777777777 6666666666 66 888888888 666 55 1 1 3 1 0 88 6 4 777777 66 0000000 4 888 4 8 1 2222 1 55 5 999 55 5 5 33 0 1111 2 33 3 8 33 8 8 88 0 3 3 0 1 0 0 1 00000 66666 1 6 8 7777 3 1 8 1 11 1 11 0 444444 3 99 6 111111111111111111 5 88 7 88 3 3 2 9999 0 7 2 666666666666666666 5 1
lowQualScore : . . . ... . .......................... .......... .. ......... ... .. . . . . . .. . . ...... .. ....... . ... . . . .... . .. . ... .. . . .. . .... . .. . . .. . . .. . . . . . . . . ..... ..... . . . .... . . . . .. . .. . ...... . .. . .................. . .. . .. . . . .... . . . .................. . .
lowQualScore : 3 7 4 000 9 11111111111111111111111111 1111111111 33 777777777 333 11 6 2 3 7 1 44 7 4 222222 11 4444444 4 666 4 2 0 7777 4 77 7 666 77 7 7 55 0 2222 5 88 2 8 88 0 0 66 6 5 2 7 4 8 8 4 44444 88888 4 7 0 0000 2 0 0 0 00 4 00 8 555555 2 88 7 777777777777777777 5 77 3 77 2 5 5 5555 0 3 0 000000000000000000 0 0
consensus : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-ATAAA--T------CTC--ATAC--G------GAA--TACAAA-N-C-A---AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
Reference ( family-3204 ) : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-ATAAA--T------CTC--ATAC--G------GAA--TACAAA-N-C-A---AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGTCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTGGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
gi|1 : AAGATAA-CGAACAGTG-ATCA---A-TCT-----C-GTAAG--T------CTC--AAAT--A------GAA--TACAAA-AAC-A---AGAGTTGGGCAAACACGGACGCCTGG-ACACACCAGAGGTGGGATC-AGGTG-C------CT--AGG---A-GGA-GTAAGC-A-TC-CCCATGTTGACC---GATCA-CA--C-C-G-CCG--TGAG-CCC-ATAGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGCGTGAAAA--AAGGC-TTAA-CAATG-GCTAATGAAACACATCAGACAGCATTTTGACTCAATGGTAGGTCATATTGTTAA-ACTAAAATCGTTAT-AA----CGACCATATA-ATTTAC--GAAA--TATTGACTTTAAAC-T---GATGTTTGAAACCCCTGCAACAACAACCTGTT-TTTGTAAGTAACCTGCCTCGA-TTAAAAGCTGGTCATACGGCAG-ACAAGCCTCTTGCATATCGAATAAGTTGAGAGACATACAACACCATAATGCAGGTGATGATGGAATATTGGCTACAATAAATTATGGGAGGTTGACGATTGGAGAAGCTGAAATTGTCCTGTTTGTCATAAAGTTGAGTAGTTA
gi|11 : aCCCTGGGATATAACAGAGA--GGTTC--GGTGTC------CTTCACGTTAA-GTA-GTAAGCAA-TC-CCC-TGTGGACCCGAGTTCA-CA--C-CTGTTCG--TAAA-CTC-ACTGT-C----TT-ATCAGCCGTAAACgtttacctttaatgtcaatgttaaaaaaaataccaagtacaagacatatcaaatgaaattaaaagtgcataaatgttaattacatctcaaagataaggaaatataa
gi|12 : AAGATAA-TAAATAGTG-ATTA---A-TCT-----C-A--AA---------CTC--ATACCGGTATAACGAA--TACATA-T-T-A---AGTGATGAACAAGCACGGACTCCTGG-ATATATGAGAGGTGATATC-Ag
gi|13 : aaaacgGC-GTAA-CAATG-ACTATTGAAACACATTA-ACAGCATTTTGATTCAATGTTAGTACATAATG---------AAGTCCTTAT-GAGTGTCGA-GATCTACATTTCA--GGAAATTGTTTACT
gi|15 : ACA-TG-ATCATATA-TCC-----CCATACA--T------CTT--ACAC--G------AAA--TACAAA-T-T-A---AGA--TG---AATTACAGACCCCTGG-ATATGCCAAAGGTGGGAT
gi|16 : gaaaacgatgaaggattAACATAT-CGAATAGTG-ATAA---A-TTT-----T-ATCAA--T------ATC--ATA-----------AA--TA-AAA-A-C-ATTGAACGTATGGAAAACACTAACTTC-AG-ATACACCAGAGGAGGAACC-Ag
gi|18 : gAA--TGCAAA-A-TTA---AGAGTAGAGCAAACACCGACCCCTGG-AT----CAAAGGTCGGATT-AGGTG-C------TT--ATG---G-GGA-ATAAGC-A-TC-CTC-TGTTAACC---
gi|19 : AATATAA-TGAACAGTG-ATTA---A-TCT-----A-AAAAAAAT------CAT--ATAT--G------GAA--TACAAA-T-T-G---AGAGATGGGCAA
gi|2 : atgacaataaagatgAAATCACTATATAAAGA--ACGGC-TTTA-CAATTTGC--ATGAAACACGTCAGAACGAATTTT-ATCCAGTTGTAGATTCTATTGGCTA-ATT-TAATTGTTAT-AA----CGACCATAAC-ATTTGC--AAAA--TGTTGATTTTAAACGA--GACTG-TTAGAACCTCTGCAACATCAA--TG-TGTTTATCAGCAGCCTGcaaaga
gi|2 : CAGTG-ATCA---A-TTT-----C-ATACA--TGTATACCTT--ATAC--G------GAA--TGCAAA-G-C-A---AGATTCGGGCAGATAAGGATCCCTGC-ATATACCAGAGGTGGAATC-AGGCG-C------CT--AGG---T-GGA-GTAAGC-A-TT-CTC-TGTTGACC---atcatacgcagtgatcaatttcatacatgtataccttatacggaatgcaaagcaagattcgggcagataaggatccctgcatataccagaggtggaatcaggcgcctaggtggagtaagcattctctgttgacc
gi|20 : aaatcactatataaagaacggctttacaatttgcatgaaacacgtcagaacgaattttatccagttgtagattctattggctaatttaattgttataacgaccataacatttgcaaaatgttgattttaaacgagactgttagaacctctgcaacatcaatgtgtttatcagcagcctgatcatacgACCAGAGTTGGGA-C-AGGTA-CATGAATCT--A-A---A-AGA-GTAAGC-T-TTTCCCA-GT-GACC---AGTCA-CA--C-C-G-CCA--GAAG-CTC-
gi|21 : aAGATAA-CAAACAGTG-ATCA---A-TCA-----C-ATAAG--T------TCA--AAAC--G------GAA--TACAAA-C-T-A---Atatatc
gi|23 : aacgtggAAGATAA-CGAACGGTG-ACCA---G-TCT-----C-ATTAA--------------ATACGTG------GAA--TACAAA-T-G-A---AGattaaatattgggcaa
gi|24 : acgcaaaagttAAGATAA-CGAACATTG-AACA---T-TCT-----C-ATAAA--C------CTA--ATA----------GAAT-TACAAAGC-C-A---AG
gi|27 : g---AGAGTGGAGCAAACACTGACTGCACG-ATATACCAGAAGAAGGATC-AGGTg
gi|28 : AAGATAA-CAAATAGCT-ACCA---A-TCA-----T-ATAAA--T------CCT--ACAC--G------GAA--TACAtc
gi|3 : acgtgAAGATAA-CGAATAGTG-ATTA---A-TCT-----C-AT-------------TC--ATAC--G------GAA--TACAAA-C-T-A---AGAGTTGGGCAAACACAGACTCATGG-ATATACCAGAGGCGGGATC-AGGTG-C------CT--AAG---A-GCA-GTAAGC-A-TC-CCC-TATTGACC---AGTTA-CA--CTC-C-TCT--TGAG-CCCTATA-T-CTTTTTTGATCAG--CT-AACAGAGTTATTTGTAGTC
gi|3 : gaaaaggtgATGAAACCCGTCAGACAGTA-TGTGACCCAATGACAGGTTG-ATTGTCAGTACT-AGATTGtatgaaacccgtcagacagtatgtgacccaatgacaggttgattgtcagtactagattg
gi|31 : gaaaaggtgaagataacgaatagtgattaatctcattcatacggaatacaaactaagagttgggcaaacacagactcatggatataccagaggcgggatcaggtgcctaagagcagtaagcatcccctattgaccagttacactcctcttgagccctatatcttttttgatcagctaacagagttatttgtagtctTCTTATATATCGATTAGGTTGAGAGACA---TACACTAT-ATGC
gi|4 : AGATAAACTAACAGTG-ACCA---AATCT-----C-GAATG--T------CCC--AAAT--A------GAACCTACTAA-C-C-A---AGA-T--GGCAAACTC-GATCCCTGG-GCACACAAAAGG---GA-C-AGTAG-CG-----CT--AGGC--A-GGACGTAAGC-AATC-CCC-TGT--AAC---TGTCA-CA--C-C-G-C-G--TGAAACTC-ATTGTTC----TTGATCAG--GTAAACAGAGCAATCCGCAGTCATATCAGTGTATGATAA--AATGCTTTAACCAACT-GC-AATGAAAC-CATCAGACAG
gi|5 : gaacGAGTAACCCGTAATAAAATCA--GTATGAAAAGAAAGGC-TGAA-TAATT-GGTA-TGAAATAAATCCGACAGTATTT-GATCTAACAACAGC----ATTCACAA-ATT-AAATCATTAC-AA----CCACCATATA-ATATTC--AGAT--TGCTGACTTTAAACATTAGCATGTTTCGAACCat
gi|6 : atatttatatacaag-AATTTGCTATCAG----TGATCATTTA-GTTTACCTGCAA--TCTTT-CATTAAGCAT--GGATATT--GAAACCCTGCAA-AACAA--T----------------TTGCCCCGATTTAAAAACTGATCATAC-GCAGAACAAG-CTCCAGCA--------AA---AACAAATG---AGCACCAT-ATGCAGGTGTTGATTTAATG-TAGCAAC-----ATTATGA------G
gi|7 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-GTATA--T------CTCCTATAA--G------AAT--TACAAA-T-C-T---AGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|8 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-GTATA--T------CTCCTATAA--G------AAT--TACAAA-T-C-T---AGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|9 : AAACTGATCATACA-CAGAACAA-TCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGATGATGGAATATT-GCTAC-ACAA--------------ACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AGAGCGATCTAACCCTTGGTATCAAACACGTCAAATCTGATTCTATTTGAAATTGGATTATAATGCTTATTACTTACACAACGTTTGCGAAATATTTACTTTAAAAGAGACCGTTAAGAACC
Unaligned ( gi|14 ): ATGAAAAATTGAAGACAACAAAAAATGATCAATTAATTAAGTGTACAGAATTGAATGAGAGCAAGATATGCACAAACCAATGGACGCACCAAAGATTTGACCAGG
Unaligned ( gi|17 ): AAGGTGAGGATAACGACAATAATCAAGGCATAACTCATAGAAAGAAATATAAACTTTTATAGTTAAACACAAACAGACCAAAGGACATACCAGAG
Unaligned ( gi|22 ): TGAAAAGGTGAAGATAACAGTCAATCTCATAAATCCGAATATTATCTACAAATTAAAAGGTTGGAAAACAC
Unaligned ( gi|25 ): ACATTGTTTACTTCGCCATTTTATATTCATCTATGTGAAAATCAATAATAAAAA
Unaligned ( gi|26 ): TTATTTATACCTACTTGTCAATTACCACGTGATATTAGTACAAAACGGAAAGGC
Unaligned ( gi|29 ): CATTGTTTATTTCGCCATTTTATATTACACAGTGATCACTTGTTAATAAA
Unaligned ( gi|30 ): CTTGACACATGGCTTAAAATAATCCAGATCATATAAATCAATC
Alignments
lowQualScore : 11111111111111111111111111 1111111111 111111 2222222 1 1 2222 1 11 11 1 2222 11 11 1 22222 11111 1111 11 11 222222 777777777777777777 1 11 11 1111 1 1 666666666666666666 1
lowQualScore : 3 5 2 555 2 77777777777777777777777777 6666666666 66 888888888 666 55 1 1 3 1 0 88 6 4 777777 66 0000000 4 888 4 8 1 2222 1 55 5 999 55 5 5 33 0 1111 2 33 3 8 33 8 8 88 0 3 3 0 1 0 0 1 00000 44444 1 6 8 7777 3 1 8 1 11 1 11 0 444444 3 77 6 111111111111111111 5 88 7 88 3 3 2 9999 0 7 2 666666666666666666 5 1
lowQualScore : . . . ... . .......................... .......... .. ......... ... .. . . . . . .. . . ...... .. ....... . ... . . . .... . .. . ... .. . . .. . .... . .. . . .. . . .. . . . . . . . . ..... ..... . . . .... . . . . .. . .. . ...... . .. . .................. . .. . .. . . . .... . . . .................. . .
lowQualScore : 3 7 4 000 9 11111111111111111111111111 1111111111 33 777777777 333 11 6 2 3 7 1 44 7 4 222222 11 4444444 4 666 4 2 0 7777 4 77 7 666 77 7 7 55 0 2222 5 88 2 8 88 0 0 66 6 5 2 7 4 8 8 4 44444 88888 4 7 0 0000 2 0 0 0 00 4 00 8 555555 2 88 7 777777777777777777 5 77 3 77 2 5 5 5555 0 3 0 000000000000000000 0 0
consensus : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-ATAAA--T------CTC--ATAC--G------GAA--TACAAA-N-C-A---AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
Reference ( family-3204 ) : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-ATAAA--T------CTC--ATAC--G------GAA--TACAAA-N-C-A---AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
gi|1 : AAGATAA-CGAACAGTG-ATCA---A-TCT-----C-GTAAG--T------CTC--AAAT--A------GAA--TACAAA-AAC-A---AGAGTTGGGCAAACACGGACGCCTGG-ACACACCAGAGGTGGGATC-AGGTG-C------CT--AGG---A-GGA-GTAAGC-A-TC-CCCATGTTGACC---GATCA-CA--C-C-G-CCG--TGAG-CCC-ATAGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGCGTGAAAA--AAGGC-TTAA-CAATG-GCTAATGAAACACATCAGACAGCATTTTGACTCAATGGTAGGTCATATTGTTAA-ACTAAAATCGTTAT-AA----CGACCATATA-ATTTAC--GAAA--TATTGACTTTAAAC-T---GATGTTTGAAACCCCTGCAACAACAACCTGTT-TTTGTAAGTAACCTGCCTCGA-TTAAAAGCTGGTCATACGGCAG-ACAAGCCTCTTGCATATCGAATAAGTTGAGAGACATACAACACCATAATGCAGGTGATGATGGAATATTGGCTACAATAAATTATGGGAGGTTGACGATTGGAGAAGCTGAAATTGTCCTGTTTGTCATAAAGTTGAGTAGTTA
gi|11 : aCCCTGGGATATAACAGAGA--GGTTC--GGTGTC------CTTCACGTTAA-GTA-GTAAGCAA-TC-CCC-TGTGGACCCGAGTTCA-CA--C-CTGTTCG--TAAA-CTC-ACTGT-C----TT-ATCAGCCGTAAACgtttacctttaatgtcaatgttaaaaaaaataccaagtacaagacatatcaaatgaaattaaaagtgcataaatgttaattacatctcaaagataaggaaatataa
gi|12 : AAGATAA-TAAATAGTG-ATTA---A-TCT-----C-A--AA---------CTC--ATACCGGTATAACGAA--TACATA-T-T-A---AGTGATGAACAAGCACGGACTCCTGG-ATATATGAGAGGTGATATC-Ag
gi|13 : aaaacgGC-GTAA-CAATG-ACTATTGAAACACATTA-ACAGCATTTTGATTCAATGTTAGTACATAATG---------AAGTCCTTAT-GAGTGTCGA-GATCTACATTTCA--GGAAATTGTTTACT
gi|15 : ACA-TG-ATCATATA-TCC-----CCATACA--T------CTT--ACAC--G------AAA--TACAAA-T-T-A---AGA--TG---AATTACAGACCCCTGG-ATATGCCAAAGGTGGGAT
gi|16 : gaaaacgatgaaggattAACATAT-CGAATAGTG-ATAA---A-TTT-----T-ATCAA--T------ATC--ATA-----------AA--TA-AAA-A-C-ATTGAACGTATGGAAAACACTAACTTC-AG-ATACACCAGAGGAGGAACC-Ag
gi|18 : gAA--TGCAAA-A-TTA---AGAGTAGAGCAAACACCGACCCCTGG-AT----CAAAGGTCGGATT-AGGTG-C------TT--ATG---G-GGA-ATAAGC-A-TC-CTC-TGTTAACC---
gi|19 : AATATAA-TGAACAGTG-ATTA---A-TCT-----A-AAAAAAAT------CAT--ATAT--G------GAA--TACAAA-T-T-G---AGAGATGGGCAA
gi|2 : atgacaataaagatgAAATCACTATATAAAGA--ACGGC-TTTA-CAATTTGC--ATGAAACACGTCAGAACGAATTTT-ATCCAGTTGTAGATTCTATTGGCTA-ATT-TAATTGTTAT-AA----CGACCATAAC-ATTTGC--AAAA--TGTTGATTTTAAACGA--GACTG-TTAGAACCTCTGCAACATCAA--TG-TGTTTATCAGCAGCCTGcaaaga
gi|2 : CAGTG-ATCA---A-TTT-----C-ATACA--TGTATACCTT--ATAC--G------GAA--TGCAAA-G-C-A---AGATTCGGGCAGATAAGGATCCCTGC-ATATACCAGAGGTGGAATC-AGGCG-C------CT--AGG---T-GGA-GTAAGC-A-TT-CTC-TGTTGACC---atcatacgcagtgatcaatttcatacatgtataccttatacggaatgcaaagcaagattcgggcagataaggatccctgcatataccagaggtggaatcaggcgcctaggtggagtaagcattctctgttgacc
gi|20 : aaatcactatataaagaacggctttacaatttgcatgaaacacgtcagaacgaattttatccagttgtagattctattggctaatttaattgttataacgaccataacatttgcaaaatgttgattttaaacgagactgttagaacctctgcaacatcaatgtgtttatcagcagcctgatcatacgACCAGAGTTGGGA-C-AGGTA-CATGAATCT--A-A---A-AGA-GTAAGC-T-TTTCCCA-GT-GACC---AGTCA-CA--C-C-G-CCA--GAAG-CTC-
gi|21 : aAGATAA-CAAACAGTG-ATCA---A-TCA-----C-ATAAG--T------TCA--AAAC--G------GAA--TACAAA-C-T-A---Atatatc
gi|23 : aacgtggAAGATAA-CGAACGGTG-ACCA---G-TCT-----C-ATTAA--------------ATACGTG------GAA--TACAAA-T-G-A---AGattaaatattgggcaa
gi|24 : acgcaaaagttAAGATAA-CGAACATTG-AACA---T-TCT-----C-ATAAA--C------CTA--ATA----------GAAT-TACAAAGC-C-A---AG
gi|27 : g---AGAGTGGAGCAAACACTGACTGCACG-ATATACCAGAAGAAGGATC-AGGTg
gi|28 : AAGATAA-CAAATAGCT-ACCA---A-TCA-----T-ATAAA--T------CCT--ACAC--G------GAA--TACAtc
gi|3 : acgtgAAGATAA-CGAATAGTG-ATTA---A-TCT-----C-AT-------------TC--ATAC--G------GAA--TACAAA-C-T-A---AGAGTTGGGCAAACACAGACTCATGG-ATATACCAGAGGCGGGATC-AGGTG-C------CT--AAG---A-GCA-GTAAGC-A-TC-CCC-TATTGACC---AGTTA-CA--CTC-C-TCT--TGAG-CCCTATA-T-CTTTTTTGATCAG--CT-AACAGAGTTATTTGTAGTC
gi|3 : gaaaaggtgATGAAACCCGTCAGACAGTA-TGTGACCCAATGACAGGTTG-ATTGTCAGTACT-AGATTGtatgaaacccgtcagacagtatgtgacccaatgacaggttgattgtcagtactagattg
gi|31 : gaaaaggtgaagataacgaatagtgattaatctcattcatacggaatacaaactaagagttgggcaaacacagactcatggatataccagaggcgggatcaggtgcctaagagcagtaagcatcccctattgaccagttacactcctcttgagccctatatcttttttgatcagctaacagagttatttgtagtctTCTTATATATCGATTAGGTTGAGAGACA---TACACTAT-ATGC
gi|4 : AGATAAACTAACAGTG-ACCA---AATCT-----C-GAATG--T------CCC--AAAT--A------GAACCTACTAA-C-C-A---AGA-T--GGCAAACTC-GATCCCTGG-GCACACAAAAGG---GA-C-AGTAG-CG-----CT--AGGC--A-GGACGTAAGC-AATC-CCC-TGT--AAC---TGTCA-CA--C-C-G-C-G--TGAAACTC-ATTGTTC----TTGATCAG--GTAAACAGAGCAATCCGCAGTCATATCAGTGTATGATAA--AATGCTTTAACCAACT-GC-AATGAAAC-CATCAGACAG
gi|5 : gaacGAGTAACCCGTAATAAAATCA--GTATGAAAAGAAAGGC-TGAA-TAATT-GGTA-TGAAATAAATCCGACAGTATTT-GATCTAACAACAGC----ATTCACAA-ATT-AAATCATTAC-AA----CCACCATATA-ATATTC--AGAT--TGCTGACTTTAAACATTAGCATGTTTCGAACCat
gi|6 : atatttatatacaag-AATTTGCTATCAG----TGATCATTTA-GTTTACCTGCAA--TCTTT-CATTAAGCAT--GGATATT--GAAACCCTGCAA-AACAA--T----------------TTGCCCCGATTTAAAAACTGATCATAC-GCAGAACAAG-CTCCAGCA--------AA---AACAAATG---AGCACCAT-ATGCAGGTGTTGATTTAATG-TAGCAAC-----ATTATGA------G
gi|7 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-GTATA--T------CTCCTATAA--G------AAT--TACAAA-T-C-T---AGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|8 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-GTATA--T------CTCCTATAA--G------AAT--TACAAA-T-C-T---AGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|9 : AAACTGATCATACA-CAGAACAA-TCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGATGATGGAATATT-GCTAC-ACAA--------------ACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
blockSeqs : A G T TAT A TGAGTCGTATATCTCCT CCGGTATAAC CC ACATTG GAT GG C T G T TG G T ATGAAT TC CGTTAA C AA T A G CGAG T TC T TGT AT A T TG T TTTT G CC A C GA T C TT T T A C T TACAT TCAGT T . C GTGT C C C C CT G AT ATTAGC T TA C TGTGTTTATCAGCAG T G A G T T G A . T A ATTATGA . T
blockSeqs : . G C . . TGAGTCGTATATCTCCT CGTG T ATTA GTA AG T T . T TG G . G . GGCA . AA . A T TGA T TC . G AT . . TG . . G . A G . . . G T A A A G ATTCT GCTA C . . . C A . G . A . GAGA T TC . T A A T T T G G . . . ACAA
blockSeqs : . . A . . CATACATGTATACCTT CG . GCCA GTA TA C T . T AG . . . . CAAT . A . A T TGA . . . C . . . A . . . . . . . . . T . A C T A GTTG ACAA T . . . T A . T . G . ATGG . . . . . A .
blockSeqs : . . T . . AAAAAAAATCAT TG . TTA GAT CG T T . T TC . . . . CAAT . A . . T A . . . G . . . . . T . A A T A C . . . . . . T . A . C .
blockSeqs : . . C . . CCATACATCTT CG . TTA TTC GG C T . T TG . . . . TGG . T . . C A . . . A . . . . . .
blockSeqs : . . C . . TATCAATATC CG . TTG GTG TG C A . T TG . . . . GGT . A . . C T . . . A . . .
blockSeqs : . . C . . CATAAGTTCA CG . GCA GTT AG T T . T AA . . . . AGA . T . . .
blockSeqs : . . C . . CATAAACCTA CG . CTA GAA G T T . T CG . . . . AA . T . . .
blockSeqs : . . C . . TATAAATCCT TA . TGA GAA C C G . C T .
blockSeqs : . . T . . CGAATGTCCC AG . CTA T C G G . . T .
blockSeqs : . . C . . CAAACTC AG . CCA T G . . . . .
blockSeqs : . . . . CATTAA . . TCT .
blockSeqs : . . . . CATTC . . TCT
blockSeqs : .
blockSeqCons : TCA******
originalCons : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-ATAAA--T------CTC--ATAC--G------GAA--TACAAA-N-C-A---AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
finalCons : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-ATAAA--T------CTC--ATAC--G------GAA--TACAAATCA------AGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AGAGCGATCTAACCCTTGGTATCAAACACGTCAAATCTGATTCTATTTGAAATTGGATTATAATGCTTATTACTTACACAACGTTTGCGAAATATTTACTTTAAAAGAGACCGTTAAGAACC
Unaligned ( gi|14 ): ATGAAAAATTGAAGACAACAAAAAATGATCAATTAATTAAGTGTACAGAATTGAATGAGAGCAAGATATGCACAAACCAATGGACGCACCAAAGATTTGACCAGG
Unaligned ( gi|17 ): AAGGTGAGGATAACGACAATAATCAAGGCATAACTCATAGAAAGAAATATAAACTTTTATAGTTAAACACAAACAGACCAAAGGACATACCAGAG
Unaligned ( gi|22 ): TGAAAAGGTGAAGATAACAGTCAATCTCATAAATCCGAATATTATCTACAAATTAAAAGGTTGGAAAACAC
Unaligned ( gi|25 ): ACATTGTTTACTTCGCCATTTTATATTCATCTATGTGAAAATCAATAATAAAAA
Unaligned ( gi|26 ): TTATTTATACCTACTTGTCAATTACCACGTGATATTAGTACAAAACGGAAAGGC
Unaligned ( gi|29 ): CATTGTTTATTTCGCCATTTTATATTACACAGTGATCACTTGTTAATAAA
Unaligned ( gi|30 ): CTTGACACATGGCTTAAAATAATCCAGATCATATAAATCAATC
Alignments
lowQualScore : 222222222222222222222222222 1111111111 11111 111111 2222222 1 1 2222 1 11 11 1 2222 11 11 1 22222 11111 1111 11 11 222222 777777777777777777 1 11 11 1111 1 1 666666666666666666 1
lowQualScore : 3 5 1 444 2 111111111111111111111111111 4444444444 55 66666 11111 555 55 0 0 3 2 88 0 6 4 777777 66 0000000 4 888 4 8 1 2222 1 55 5 999 55 5 5 33 0 1111 2 33 3 8 33 8 8 88 0 3 3 0 1 0 0 1 00000 44444 1 6 8 7777 3 1 8 1 11 1 11 0 444444 3 77 6 111111111111111111 5 88 7 88 3 3 2 9999 0 7 2 666666666666666666 5 1
lowQualScore : . . . ... . ........................... .......... .. ..... ..... ... .. . . . . .. . . . ...... .. ....... . ... . . . .... . .. . ... .. . . .. . .... . .. . . .. . . .. . . . . . . . . ..... ..... . . . .... . . . . .. . .. . ...... . .. . .................. . .. . .. . . . .... . . . .................. . .
lowQualScore : 1 3 5 777 7 777777777777777777777777777 7777777777 99 22222 55555 111 22 7 5 1 0 22 1 2 4 222222 11 4444444 4 666 4 2 0 7777 4 77 7 666 77 7 7 55 0 2222 5 88 2 8 88 0 0 66 6 5 2 7 4 8 8 4 44444 88888 4 7 0 0000 2 0 0 0 00 4 00 8 555555 2 88 7 777777777777777777 5 77 3 77 2 5 5 5555 0 3 0 000000000000000000 0 0
consensus : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-A-TAAA--T------CTC--ATAC--G------GAA--TAC-----AAA--T-CAAGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
Reference ( family-3204 ) : NAAGATAA-CGAACAGTG-ATCA---A-TCT-----C-A-TAAA--T------CTC--ATAC--G------GAA--TAC-----AAA--T-CAAGAGTNGGGCAAACACNGACCCCTGG-ATACACCAGAGGTGGGATC-AGGTG-C------CT--ACG---A-GGA-GTAAGC-A-TC-CCCATGTCGACC---GGTCA-CA--C-C-G-CCG--TGAG-CCC-ATNGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGTATGAAAA--AAGGC-TTAA-CAATT-GCTAATGAAACACGTCAGACAGCATTTTGATCCAATGGTAGNTCGTATTGNCAA-ACT-AAATCGTTAT-AA----CGACCATATA-ATTTNC--GGAA--TGTTGACTTTAAACGT--GGATGTTTNGAACCCCTGCAACAACAA--TG-T-TTTGT-AGCAGCCTGCCCCGATTTAAAAACTGATCATACGGCAGAACAAGCCTCTTGCATATCGATTAAGTTGAGAGACG---AACACCAT-ATGCAGGTGATGATGGAATATTGGCTAC-ACAAATTATGG------GACGATTGGAGAAGCTGAAACCGTCCCGTTTNTCATAAAGTTGAGCAGTTA
gi|1 : AAGATAA-CGAACAGTG-ATCA---A-TCT-----C-G-TAAG--T------CTC--AAAT--A------GAA--TAC-----AAA--AACAAGAGTTGGGCAAACACGGACGCCTGG-ACACACCAGAGGTGGGATC-AGGTG-C------CT--AGG---A-GGA-GTAAGC-A-TC-CCCATGTTGACC---GATCA-CA--C-C-G-CCG--TGAG-CCC-ATAGT-C----TTGATCAG--GTAAACAGAGCAATCCGTAGTCAAATCACTGCGTGAAAA--AAGGC-TTAA-CAATG-GCTAATGAAACACATCAGACAGCATTTTGACTCAATGGTAGGTCATATTGTTAA-ACTAAAATCGTTAT-AA----CGACCATATA-ATTTAC--GAAA--TATTGACTTTAAAC-T---GATGTTTGAAACCCCTGCAACAACAACCTGTT-TTTGTAAGTAACCTGCCTCGA-TTAAAAGCTGGTCATACGGCAG-ACAAGCCTCTTGCATATCGAATAAGTTGAGAGACATACAACACCATAATGCAGGTGATGATGGAATATTGGCTACAATAAATTATGGGAGGTTGACGATTGGAGAAGCTGAAATTGTCCTGTTTGTCATAAAGTTGAGTAGTTA
gi|11 : aCCCTGGGATATAACAGAGA--GGTTC--GGTGTC------CTTCACGTTAA-GTA-GTAAGCAA-TC-CCC-TGTGGACCCGAGTTCA-CA--C-CTGTTCG--TAAA-CTC-ACTGT-C----TT-ATCAGCCGTAAACgtttacctttaatgtcaatgttaaaaaaaataccaagtacaagacatatcaaatgaaattaaaagtgcataaatgttaattacatctcaaagataaggaaatataa
gi|12 : AAGATAA-TAAATAGTG-ATTA---A-TCT-----C-A---AA---------CTC--ATACCGGTATAACGAA--TAC-----ATA--T-TAAGTGATGAACAAGCACGGACTCCTGG-ATATATGAGAGGTGATATC-Ag
gi|13 : aaaacgGC-GTAA-CAATG-ACTATTGAAACACATTA-ACAGCATTTTGATTCAATGTTAGTACATAATG---------AAGTCCTTAT-GAGTGTCGA-GATCTACATTTCA--GGAAATTGTTTACT
gi|14 : AAGACAA-CAAAAAATG-ATCA---A-T-T-----A-ATTAAG--T-----------GTAC--A------GAA--T-T-----GAA--T--GAGAGCAAGATATGCACAAACCAATGG-ACGCACCAAAGATTTGACC-AGG
gi|15 : atgaaaaattgACA-TG-ATCATATA-TCC-----CCA-TACA--T------CTT--ACAC--G------AAA--TAC-----AAA--T-TAAGA--TG---AATTACAGACCCCTGG-ATATGCCAAAGGTGGGAT
gi|16 : gaaaacgatgaaggattAACATAT-CGAATAGTG-ATAA---A-TTT-----T-A-TCAA--T------ATC--ATA-----------AA--TAA-----AAACAT-TGAACGTATGGAAAACACTAACTTC-AG-ATACACCAGAGGAGGAACC-Ag
gi|18 : gAA--TGC-----AAAA-T-TAAGAGTAGAGCAAACACCGACCCCTGG-AT----CAAAGGTCGGATT-AGGTG-C------TT--ATG---G-GGA-ATAAGC-A-TC-CTC-TGTTAACC---
gi|19 : AATATAA-TGAACAGTG-ATTA---A-TCT-----A-A-AAAAAAT------CAT--ATAT--G------GAA--TAC-----AAA--T-TGAGAGATGGGCAA
gi|2 : atgacaataaagatgAAATCACTATATAAAGA--ACGGC-TTTA-CAATTTGC--ATGAAACACGTCAGAACGAATTTT-ATCCAGTTGTAGATTCTATTGGCTA-ATT-TAATTGTTAT-AA----CGACCATAAC-ATTTGC--AAAA--TGTTGATTTTAAACGA--GACTG-TTAGAACCTCTGCAACATCAA--TG-TGTTTATCAGCAGCCTGcaaaga
gi|2 : CAGTG-ATCA---A-TTT-----C-A-TACA--TGTATACCTT--ATAC--G------GAA--TGC-----AAA--G-CAAGATTCGGGCAGATAAGGATCCCTGC-ATATACCAGAGGTGGAATC-AGGCG-C------CT--AGG---T-GGA-GTAAGC-A-TT-CTC-TGTTGACC---atcatacgcagtgatcaatttcatacatgtataccttatacggaatgcaaagcaagattcgggcagataaggatccctgcatataccagaggtggaatcaggcgcctaggtggagtaagcattctctgttgacc
gi|20 : aaatcactatataaagaacggctttacaatttgcatgaaacacgtcagaacgaattttatccagttgtagattctattggctaatttaattgttataacgaccataacatttgcaaaatgttgattttaaacgagactgttagaacctctgcaacatcaatgtgtttatcagcagcctgatcatacgACCAGAGTTGGGA-C-AGGTA-CATGAATCT--A-A---A-AGA-GTAAGC-T-TTTCCCA-GT-GACC---AGTCA-CA--C-C-G-CCA--GAAG-CTC-
gi|21 : aAGATAA-CAAACAGTG-ATCA---A-TCA-----C-A-TAAG--T------TCA--AAAC--G------GAA--TACAAACTAAA--T-TAAATATTGGGCAAtatatc
gi|23 : aacgtggAAGATAA-CGAACGGTG-ACCA---G-TCT-----C-A-TTAA--------------ATACGTG------GAA--TAC-----AAA--T-GAAG
gi|24 : acgcaaaagttAAGATAA-CGAACATTG-AACA---T-TCT-----C-A-TAAA--C------CTA--ATA----------GAAT-TAC-----AAAG-C-CAAG
gi|27 : gAGAGTGGAGCAAACACTGACTGCACG-ATATACCAGAAGAAGGATC-AGGTg
gi|28 : AAGATAA-CAAATAGCT-ACCA---A-TCA-----T-A-TAAA--T------CCT--ACAC--G------GAA--TAC-----Atc
gi|3 : acgtgAAGATAA-CGAATAGTG-ATTA---A-TCT-----C-A-T-------------TC--ATAC--G------GAA--TAC-----AAA--C-TAAGAGTTGGGCAAACACAGACTCATGG-ATATACCAGAGGCGGGATC-AGGTG-C------CT--AAG---A-GCA-GTAAGC-A-TC-CCC-TATTGACC---AGTTA-CA--CTC-C-TCT--TGAG-CCCTATA-T-CTTTTTTGATCAG--CT-AACAGAGTTATTTGTAGTC
gi|3 : gaaaaggtgATGAAACCCGTCAGACAGTA-TGTGACCCAATGACAGGTTG-ATTGTCAGTACT-AGATTGtatgaaacccgtcagacagtatgtgacccaatgacaggttgattgtcagtactagattg
gi|31 : gaaaaggtgaagataacgaatagtgattaatctcattcatacggaatacaaactaagagttgggcaaacacagactcatggatataccagaggcgggatcaggtgcctaagagcagtaagcatcccctattgaccagttacactcctcttgagccctatatcttttttgatcagctaacagagttatttgtagtctTCTTATATATCGATTAGGTTGAGAGACA---TACACTAT-ATGC
gi|4 : AGATAAACTAACAGTG-ACCA---AATCT-----C-G-AATG--T------CCC--AAAT--A------GAACCTAC-----TAA--C-CAAGA-T--GGCAAACTC-GATCCCTGG-GCACACAAAAGG---GA-C-AGTAG-CG-----CT--AGGC--A-GGACGTAAGC-AATC-CCC-TGT--AAC---TGTCA-CA--C-C-G-C-G--TGAAACTC-ATTGTTC----TTGATCAG--GTAAACAGAGCAATCCGCAGTCATATCAGTGTATGATAA--AATGCTTTAACCAACT-GC-AATGAAAC-CATCAGACAG
gi|5 : gaacGAGTAACCCGTAATAAAATCA--GTATGAAAAGAAAGGC-TGAA-TAATT-GGTA-TGAAATAAATCCGACAGTATTT-GATCTAACAACAGC----ATTCACAA-ATT-AAATCATTAC-AA----CCACCATATA-ATATTC--AGAT--TGCTGACTTTAAACATTAGCATGTTTCGAACCat
gi|6 : atatttatatacaag-AATTTGCTATCAG----TGATCATTTA-GTTTACCTGCAA--TCTTT-CATTAAGCAT--GGATATT--GAAACCCTGCAA-AACAA--T----------------TTGCCCCGATTTAAAAACTGATCATAC-GCAGAACAAG-CTCCAGCA--------AA---AACAAATG---AGCACCAT-ATGCAGGTGTTGATTTAATG-TAGCAAC-----ATTATGA------G
gi|7 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-G-TATA--T------CTCCTATAA--G------AAT--TAC-----AAA--T-CTAGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|8 : AAATAA-CGACTAGTGGAT-----G-TCTTGAGTC-G-TATA--T------CTCCTATAA--G------AAT--TAC-----AAA--T-CTAGAGAAGGGCAAACTCC--CGCCGGG-A-GCACTAGACAT----TCGAGATG-T------CT--ACA---ATGGA-GTAAGC-T-TC-CCCATGTCGATTTG-AGTCATTATCC-C-A-CCGATTGAA-CCC-
gi|9 : AAACTGATCATACA-CAGAACAA-TCTCTTACATATCGATTAAGTTGAGAGACA---AACACCAT-ATGCAGGTGATGATGGAATATT-GCTAC-ACAA--------------ACGATT-GAGAAGCTGAAACCGTCCCGTTTTTCATAAAGTTGAGCAGTTA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AGAGCGATCTAACCCTTGGTATCAAACACGTCAAATCTGATTCTATTTGAAATTGGATTATAATGCTTATTACTTACACAACGTTTGCGAAATATTTACTTTAAAAGAGACCGTTAAGAACC
Unaligned ( gi|17 ): AAGGTGAGGATAACGACAATAATCAAGGCATAACTCATAGAAAGAAATATAAACTTTTATAGTTAAACACAAACAGACCAAAGGACATACCAGAG
Unaligned ( gi|22 ): TGAAAAGGTGAAGATAACAGTCAATCTCATAAATCCGAATATTATCTACAAATTAAAAGGTTGGAAAACAC
Unaligned ( gi|25 ): ACATTGTTTACTTCGCCATTTTATATTCATCTATGTGAAAATCAATAATAAAAA
Unaligned ( gi|26 ): TTATTTATACCTACTTGTCAATTACCACGTGATATTAGTACAAAACGGAAAGGC
Unaligned ( gi|29 ): CATTGTTTATTTCGCCATTTTATATTACACAGTGATCACTTGTTAATAAA
Unaligned ( gi|30 ): CTTGACACATGGCTTAAAATAATCCAGATCATATAAATCAATC