lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11 222222222222222222222 1111111 44444444444444444 555555555555555555555555555555 1 111111 111111 4444 11 2222222 1111 555555555555555555555555 22222 111 1 4444444 111 1111111 11111111 111111 333333 11 2222 33333333333 1111 2222222222222 33333333333 111 1 1 11 1111 2 11111111 333333 1111 44444444444444444444444444444444444444444444444444444444444444444444444 11 1111111111 1 1 33 11 1 11 1 11 1111111 22 444444444 555555555555555555555555555 11 2 1111111 2222222 111 111111111 111 1111 6666666666 4444 3333333333 111 11111 11111 111 33 3333 555555555 11 11 1111 5555555555555555555 1 111 22 1 333
lowQualScore : 0 8 33 66 1 666666666666666666666 5 5 555 7777777 00000000000000000 66 5 333333333333333333333333333333 2 5 66 1 777777 0 77 444444 5 5 6666 66 5 5 66 5 0000000 888 77 0000 888888888888888888888888 5 5 5 00 66666 66 5 777 5 5 0 4 444 0 6666666 111 1 4444444 4 4 4 66666666 4 222222 777777 00 8 66 0000 22222222222 4 0000 4 4 4 5555555555555 4 44444444444 8888 222 4 4 4 66 6 0 5 88 66 66 0000 4 5 33333333 888 66 222222 5 66 4 8888 5 11111111111111111111111111111111111111111111111111111111111111111111111 66 5 66 4444444444 5 5 0 5 88 5 0 5 5 5 5 66 0 66 5 5 11 66 7 5 666 66 2 5 11 66 5 5 11 6666666 88 111111111 5 444444444444444444444444444 5 00 5 8 5 3333333 5 5 5 3 9999999 6 77 2 777 111 88 999999999 8 444 8888 1111111111 8 8888 8 2222222222 5 0 444 8 33333 8 88888 444 55 8 8 8 8 8 5555 8 3 888888888 11 8 11 7777 4444444444444444444 0 777 9 33 3 666
lowQualScore : . . .. .. . ..................... . . ... ....... ................. .. . .............................. . . .. . ...... . .. ...... . . .... .. . . .. . ....... ... .. .... ........................ . . . .. ..... .. . ... . . . . ... . ....... ... . ....... . . . ........ . ...... ...... .. . .. .... ........... . .... . . . ............. . ........... .... ... . . . .. . . . .. .. .. .... . . ........ ... .. ...... . .. . .... . ....................................................................... .. . .. .......... . . . . .. . . . . . . .. . .. . . .. .. . . ... .. . . .. .. . . .. ....... .. ......... . ........................... . .. . . . ....... . . . . ....... . .. . ... ... .. ......... . ... .... .......... . .... . .......... . . ... . ..... . ..... ... .. . . . . . .... . . ......... .. . .. .... ................... . ... . .. . ...
lowQualScore : 8 0 22 22 0 444444444444444444444 7 7 999 9999999 44444444444444444 99 0 888888888888888888888888888888 2 0 99 2 888888 9 00 444444 0 0 9999 99 0 0 99 0 8888888 888 55 2222 555555555555555555555555 0 0 0 44 55555 99 0 111 0 0 1 4 111 0 0000000 999 9 4444444 4 4 4 33333333 4 888888 222222 11 9 11 0000 99999999999 4 4444 4 4 4 6666666666666 4 99999999999 4444 222 4 4 4 11 8 0 0 88 99 99 6666 4 0 99999999 888 99 222222 0 99 3 6666 0 44444444444444444444444444444444444444444444444444444444444444444444444 00 0 99 1111111111 4 0 2 0 66 0 0 0 0 0 0 99 0 99 0 0 99 99 0 0 666 99 5 0 99 99 0 0 99 1111111 77 000000000 7 777777777777777777777777777 7 77 7 6 0 3333333 7 7 7 6 0000000 7 77 5 555 777 66 333333333 0 000 0000 2222222222 0 0000 0 6666666666 0 8 000 0 22222 0 22222 000 00 0 0 0 0 0 0000 0 8 222222222 00 0 00 0000 0000000000000000000 0 000 8 88 3 777
consensus : GAGCTATAACT-CTAATAAAAACAGATTGAGA-G---CT-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC---CN-AAAAA--T--------------CCA--CA-TTAC-A-----GCA-A----TAA-G----CGT-ATGTTAGTT-G--GAAA----A-TAT-TATTTAA------CC-AAATG-TG--NACACT--GTTCA-ACA-TA--GGAAT-T--G----TT---T-GTT--GTTGATTTA--A-CAG----G-A-C----TAG-TG-AAG-CATTTC--T--AACCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-TGCGCC-A---TGT-CCCATA-------CAT-TT-TG-A----C-C-GC-GTATCA------GT--C--TCTTC-TT-T--CT----AACA---------CAAA-AAG---CAA-TT-G-TA--C---NT-----TTT-TATGA-T-------AAT---AA---T-TTC-AA-CT--TCCATTCAA-T-GAA--TT--T--TC----AA-AC-CTTAA---T-A-ATCGC---AGA--CA---A-TCC-AAAG--TTCGC-G-TCGTG-A--TGCC-GC-A-A-G--CTC-GCTC-A--ATCAGGTG-TCAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTCGC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACAT-TCCCAACTC-C-AC--AAC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAA--TTG-TAG-T-TTGGGT--GCACAGTG--G-C----TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACATG-CTGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTGA--AAACA-CG-GCAT-G-TCG--TAATA-TTTCACTTTAT-TTTTAAAT-AAA---AAAAATAGCAA--T-CGTCTTT-GG-T-ATA-TTTGTCA-ATAAAGAATAAA-TA-----TT-T-AGCCCATA---TAAT-TTA--TTTTTT-AGCTCA--A--AT---ATTTTA-T-TTG-AAG-ACT-CG-CAGAAT---TGTTGG-GGAT--A------TTA--C-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
Reference ( gi|3 ) : GAGCTATAACT-CTAAAAAAAACAGATTGA-A-G---CT-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC---CC-AAAAA--T--------------CCA--CA-TTACTA-----GCA-A----T-A-G----CAT-ATGTTAGTT-G--GAAA----A-TAT-CATTTAA------CC-AAATG-TG--AACACT--GTTCA-ACA-TA--GGAAT-T--G----TT---T-GTT--GTTGACTTA--A-CAG----G-A-C----TAG-TG-AAG-CATTTC--T--AACCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-TGCG---A---TGT-CCCATA-------CAT-TT-TG-A----C-C-GC-GTATCA------GT--C--CCTTC-TT-T--CT----AACA---------C-AA-AAG---TAA-TT-G-TA--C---AT-----TTT-TATTA-T-------AAT---AA---T-TTC-AA-CT--TCCATTCAA-T-GAA--TT--T--TC----AACAC-CTTAA---T-A-ATCGC---AGA--CA---ACTCC-AAAG--TTCGC-G-TCGTG-A--TGCC-GC-A-A-G--CTCAGCTC-A-AATCAGGTG-TCAT--GCGA--GGA--TGCT---C-ATGT-GAGGCAA-TTCGC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACA--TCCCAACTC-C-AC--AAC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-G-AA--TTG-CAG-T-TTGGGTG-GCACAGTG--GCC----TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGT-AACATG-CTGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTTG--AATCA-CG-GCAT-G-TCG--TAATA-TTTCACTTTATATTTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTT-G--C-AT--TTTGTCA-AC----AATAAA-TA-----TT-A-AGCCCATA---TAAT-TTA--TTTTTT-AGCTCA--A--AT---ATTTT--T-TTG-AAG-ACT-CG-CAGAAT--CTGTTGG-GGAT--AC-----TTA--C-GACATT--AGTCA--GATT------------CACGTA-TCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
gi|2 : GAGCTA--ACT-CTAATAAA--CTGATTGA-AAG---CT-T--G-TTT--ACAAA-CA-TA-T-GTAGATTCA---AA-AAAAA--AAAAAAAAAAAAAAACCA--CA-ATAC-------GCATA----T-A----------ATGTCAGTT-ACTGGAA----A-TGT-TATTTAA------CC-AAATG-TG----CACT--GTTCA-GCA-TA--GGAAT-T--A----TC---T--TT--GTTGA------------------------TAA-TG-AAG-C--------------------GTT-A-TC-T-CGT-CATA--TTTA-TGCCCACA---T-T-CCTCTC-------CAT-TT-TG-ACAGTC-T-GT-GTATCA------GT--T--A------T-T--CT----AACA---------CAAA-AAG---CTA-TT-G-TA--C---TT-----TTT-TATAA-T-------AAT---CA---T-TAG-AA-CT--T-CATTCAA-T-AAA--TT--T--TC----AA-AC-CTTTA---T-A-ATGGC---AGA--CA---A-TCC-AAAG--TT-G------GTG-A--TGTC-GC-A-G-G--C----------------GTG-T-----------GAA--AGCT---G-A-AT-G-GGTAA-ACCGC-A--T-----T----TTT-TACAC-CCT-G-CG-AG-G-GCA-TCAGC-T--A-ACAC-CCCCAACTC-A-AC--AAC--ATG-CCT-CC-C-C--TCCCTCCAGT-CG--TT--GCTAA-AA--TTG-TAG-T-TCGGGT--GCACAGTGTCGTCTGTATCTGAGA-CTCGA-TA-------------------------GCA----TCG-AGCATAAACATG---ATCGT
gi|4 : catcgtatctaaaatattattacacacaattacacataactctgaatgctaactgaatcataatttaaaatgatttttgataataaattttgacaacagatatgctgggaggcaattaaataacaatgagctgccctcctatctctttgtagtacatgtaccttgcacatgtttagagctcctattttcttattgttaataacttgtgaatatatcaataattttggaaggggtggggcatttttgataaatgtacataaattataaaagaggggcagcttaaagatttaggcaggtgacttagactactattttataataatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggTATAACTTCTAAATAAAACAGATTGAGA-G---CTTCCAA-TTT---CAAA-CA-TG-T-GCAGACCCC---CA-AAAAA--T--------------CCA--CA-TTAACA-----GCA-A----A-A-G----CAT-ATGTTAGTT-G--G-AA----A-TAT-CATTTAA------CC-AAATG-TGGAAACACT--GTTC--ACA-TA--GGAAT-T--G----TTTTCT-GTT--G-TGATT----A-CAG----G-A-C----TAG-TG-AAG--ATTTC--TTAAACCGG--A-GTT-A-TC-T-CTT-CATA--CTTA-TGCGC--A---TGT--CCATA-------CTA-TT-TG-A----C-C-GC-GTATCA------GT--C--TCTT--TC-T--CTA---AACA---------C-AA-AAG---T-A-TT-GATC--C---AT-----TTTATAT------------AT---AA---T-TTC-AA-CT--TTC-TTCAA-T-GAAT-TT--T--TC----AA-AC-CTTAA---TGA-ATCGC---AGA--CA---A-TCC-GAAGCTTTCGC-G-TCGTGTA--TG-C-GC-A-AGG--CTCAGC-C-ACAATCAGG----CAT---CGA--GGA--TGCT---CGATGT-AGGGCAA-TTCGC-A--T-----T----CTT-TACAC-GCA-G-CG-AG-A-GCATTCAGC-C--A-ACAT-TCCCAACTC-C-AC--AAC--ATGT-CT-TC-T-C--T-CCTCCA-G-CG--TT--GCT-GAAA--TTG-CAG---TTGGGT--GCACAGTG--G-C----TCCGAAA-CATGACTGTTAG--T-------A-------CC-GCAA-CCTCG-AGTGT-AAACTG-CTGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTtgtaa
gi|6 : gatctgccgattatcgaattaattttgctagggtgtgggggcattttttttgcactagctgttattttgtacactgtacaaaagagcggaacaacttgaggatatgaaacatgttacttactactttattaaagtaatcaaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttccttcagagagacccaTAACT-CTAATTAAAACAGATTGA-T-A---CC-CCAA----------------------AAATTC-----------------------------CCA--CA-TTAC-A-----GCA-A----TAA-G----TGT-ATGTTAGTT-G--G--A----A-TAT-TATTTAA------CC-AAAT--TGGCATCACTCATTTCA-AC--TAG-GGAAT-T--T----TT---T-GTT--GTTGAT-----A-CAG----G-A-T----TAG-TGAAAG-CATTCT--T--AACCCG--A-GTT-A-TC-T-CTT-CATG--CTTA-TGCGGC-A---TGT--CCATA-------CAT-TT-TG-AGG--C-C-GC-GTATCA------GT------CTTC-TTAT--CTAAACAACA-----------AA-AAG---CAA-TC-G-CA--T---AC-----TTT-TTTTA-TTTGGGGGAATTAAGA---TATTC-AA-CT--T-CATTCAA-T-GAA--TT--T--TC----AAAAC-CTTAA---T-A-CTCGC---AAA--CA---A--TC-AAAT--TCCGCGG-TCGTG-A-------GC-G-A-G------------------GATGCTCAT--GT-A--GG-------------------GGCAA--CCGC-ACTT-----T----TCT-TATAC-GCACG-CGCAGCA-GCA-TCTGC-C--AGACAT-TCCCAACTC-C-AC--AA---ATGT-CG-TC-T-C--T-CCTCCAGA-CGT-TT--GCT-GAAA--TTGTTA----TTGGGTGTGCACAGTG--G-C----TCCGAAA-CAT-A-TAC--A--TTCACAGCA-------CC-GCA---CTCG-AGTGA-AACATG-CTGTCGTCA--TT-C-TC-GTC-ACGGAA-TGA-TTGAAAAACA-CG-G-AT-GTTCT--TAATATTTTCACCATATTATTTAAATAAAA---AAAAATAGCAA--T-CGTCTTT-GGTT-ATA-TTTGCCA-AC----AAGAAA-TAAACATTT-T-AG-CCATATTCTAATCTTA---TGTTT-AGCTCC--A--AT---ATTTTAAT-TTG-AAA-ACT-AG-CAGAAT---TGTTGG-GGATTGA--------A--C-GACATTGCAGTAA--GATT------------CACGTATTCG-AATTACG---TTTTTTCGTCATGA--
gi|7 : agcTAACT-CTAATAAAA-CAGATTGA-AAG---CT-TC---------CGAA-CA-TG-T-GCGGACTCC---CA-AGAAAACT--------------TCA--AA-ATAC-A-----ACA-A----T-AAG----TGT-AAGTTAGTT-G--GAAA------TAT-TATATAA------CC-AAATG-TG--CACACT--GCTCA-ACATTA--GGAAT-T--G----TT---T--TG--GTTGATT----A-CAG----G-A-------AGTTA-AAT-CATTTC--TTCAACCCG--A-GTT-A-TC-T-C-T-CATAGCTTTA-TGCGGC-A---TGT-CAT-TA-------CA--TT-TG-A------T-GC-GGATCA------GT--CGTTCTT--TT-T--CT----AACG---------T-AGCAAG---CAA--T-G-T---T---AA-----TAT-TATGA-TA------AAT---CA---T-TTA-AA-CA--T-CATCAAA-T-GAA--TT--T--TC----AA-AC-CTTAA-----A----GC---AGA--CA---A-TCC-AAAG--TT-----------------------A-A-G--TTCTGAGC-A-TACCA--TG-CCA-----GA--G-------------ATGTAGGGGCAA-CTCGC-A--T-----T----TCA-TACAC-GCA-G-CG-TG-A-GCA-TCAGC-C--A-ACAT-TCCCAAATC-C-AC--AAC--ATGT-CT-TC-C-T--TCCCTCCAGG-CG--TA--GCT-GAAA--TTG-TAG-T-TTAAGT--GCACAGTG--G-C----TCCGAAG-CATGA-TGT--AG-C-------A-------CC-GCAA-CCTCG-AGTGCAAACA-------CGGCA--------T-GT---CGTAA-T-ATT------TCA-C---------TT---TATTA-TTTCA-----------AATT-AAA---AAAAATTGCAA--T-CGTCTTTGG--T-ATA-TTTGTCA-ACAAAGAATAAA-CAT----TT-T-AGCCCATC---TAAT-TTA--TTTTTT-AGCTCA--A--AT---ATTGTA-T-TTG-AAG-ACT-CG-CAGAATAATTGCTGG-GGGT--A------TTA--C-GACATT--AGTAA--GAGT------------TAC
gi|12 : agcTAACT-CTAATAAAA---GATTGAGA-G---CT-TCAAATTT--ACCAA-CA-TG-T-GTAGACT-C---CC-AAAAA--T--------------CCA--CA-TT--CA-----GCA-A----TAA-G----TGTAATG-TAGTT-G--G-AA----A-TAT-TATTTAA------CCAAAATC-TG----CACT--GTTCA-ACA-TA--GGGAT-T--GT---TT---T-GTT--G-TGATT----A-CAG----G-A------TAG-TG-AAG-CATTTC--TTAAACCCGTTA-GTT---TC-T-ATT-ttcccttttcatgtatc
gi|9 : gatcttgtgattatcataattttgcctaggtcagagggtgggggcatttttttttttgctagctgttatattttacagactgtacaaaagagcagacaacttggaggatttaaaacaggttactactttattaactatcaaattggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgtagcTTGAGA-G---CT-CCAA-CTTTAACAAA-CA-TGCT-GCAGACTCC---CCCAAAAA--T--------------CCA--CATTTAC-A-----GCA-A----TAA-G----TGC-ATGTT-GTT-G--GAAAT---A-T-T-CATTTAA------CC-AAATG-TGC-CACACT--GTTCA-ACA-TA--GCAAT-T--GGTTCTT---T-GTT---CTG-CTTATTA-CAG----GAA-C----TAG-TG-AAG-CA--TC--TA-AACCCG--A-GTT-A-TC-T-CTTACATA--CTTATTGCGC--A---TGA-TCCA-A-------AAT-TT-GG-A----CGC-GCGGTATCA------GT--C--TTTCT-TT-T--CT----AACA---------CAAA-AAG---CAA-TTGG-TAC-C---ATGTTTCTTT-TTTCATT-------AAT---AAT--T-TTC-AA-CT--TCCATTCAAGT-GAATTTT--T--TC----AA-AC-CTTAA---T-AGATCGC---AGA--CA---A-TCC-AAAG--TTCGC-GTTCGTG-A--TGCC-GCGA-A-A--CT-AGCTC-A-GATCA---G-TCATTAGC-A--GGA--TGCT---C-ATGA-GGGGGAA-CTCGT-A--T-----T----TGT-T-CACGGCT-G-CGAAG-AGGCA-TCAGC-C--AGACAT-TCCCAACTC-C-ACA-AAC--ATGT-CT-TC-T-CGTTCCCTCCAGGCCG--TT--GCT-G-AA--TTGATAG-TGGTGGGCATGCACATTG----C----TCCGAAACCAT-A-TGT--A--T-------AGGTTTACCC-GCAA-CCTCGAAGTGTAAACATG-CTGC--TCA--TTACATT-GTCAACGGAA-TGATTGA--AAACACCG-GCATGG-TCGCTCAATC-TTT---TTTTTATTTgtgtagccgaaaatataataacaattgatatctgttgttccctacttaacaagtggcagacaa
gi|8 : TGA-A-GAGCTT-CCAA-TTT--ACAAAACAGTG-TAGCAGACTCCGCGCC-AAAAAAAT--------------CCATCCA-TTAAGAAG---GCA-A----T-A-GAGTGCA--ATGTTGGTTTG--GAGA----AGTAT-TATTAAT------CC-AAATGCTGCAAGCACT--GTTCA-ACA-TACAGCGATGT--T----TT---T-GTT--GTTGA-TTA--ATCAG----G-A------TAG-TG-AAG-CATTTCCTT--AACCCG--ATGTTGA-TC-TTCTT-CAT---CTTA-TGCG---GCATTGT-CCAA-A-------CAT-CTATG-A----C-C-GC-GTACAA------GT------CTTC-TT-T--CCTA--AACA---------C-AA-AAAAGCCAA-TT-G-TAGTC---TTG----TTT-TATCA---------AAT---AAATTT-TTCGAA-CT--TGCATTCAATT-GAAGCTTTGT--TCCGAAAGCGG-CTTAACATT-A-ATCGC---AGAAGCA---GATCCTAATG--TTCGCGG-TCGTG-ATCTGCCAGC-A-A-GAACTTCGCTCGA-GATAAG-----CAT--GCGAAGGGA--TGCT---C-ATGTAGGGGCAACTCCGC-A--T-----TGTGCTTT-CACAC-GC--G-CG-AG-A-GCA-TCAGCTC--A-ACATTTCCCAACTCGC-ACAGAACTAGTGTTCTCTCGT-C--ACCTCCCAGG-CG--TCTGGCT-G-AAATTTG-TAGTT-TTGGGTT-GCACATTT--G-C----TCCGAAG-CATGA-TGT--ACGT-------A-------CCTGCAATCCTCG-AGTGTAAACATGCCTGTCGTCAGTTT-C-TTAGTC-ACGGGA-TGACTTG--AA--A-CGCGCAT-G-TCG--TAA
gi|11 : --T--------------CCA--CA-TTA-TAATGGTGCA-AATATT-G-G------T-ATGCTTGTT-G--AAAAGATGA-TGTATATATAAACCAATCC-AAATG-TGTGCACACT--GGCTACACA-TAA-GGAAT-CTAG----TT---TTGTTTGATTGATTTA----CAGTCTAG-AGCATAATAG-TG-AAGGCATATA--T--TACCCG--A-GTT-AATCAT-CTT-CATAA-CATAATGGGC--A---TGTATCCATAAACACAACATATT-TGCA----C-AAGC-GTATCA------ATAGC--TCTTC-TT-TTCCT----AACAACATGATCAC-AA-AGC---TAACTT-G-TA--CTTGAT-----TTT-AATGA---------AAT---AA---T-TTT-AAACTATTCAATTCAA-TTGAA--TT--TGATT----ACCAAACTTAA---T-ATATCACGCAAGA--CAGATAC-CC-AAAG--TTCGC-C-TCGTG-A-------GC-ATA-T--CGCAGCTC-G-CATCAGG----CAT--GCGA--GGAACTGCTATGC-AGGT-AGGGCAAGCTCGCAA--TCTTAAT----TCTATA-AC-GCA-GACG-A--A-GCA-TCAGC-CTAA-ACA--TCCCAACTC-CAAC--AAC--ATGTCTT-CA-TAC--TCCCTCC-GG-CGTTTT--GCT-A-AA--at
gi|19 : -CATT--TTTA-TGCGGC-A---TG--CCCATA-------TAT-TT-GG-A----C-C-GT-GTATCAGTATCAGT------CTTCTTT-T--CT----AACA---------CAAA-AAG---CAA-TT-G-CA--C---TT-----TTT-TATGA-T-------AAT---CA---T-TCC-AA-CT--T-CATTCAA-T-GAA--TT--T--TC----AA-AC-CTTAA---T-G-ATGGC---AGA--CA---AC-CC-AAAG--Taattgacaatcaaaaagttataaacaaagatgcaacagtggcttaagctga
gi|23 : gttcaaatcataaacatctgaaattatcttttaatctttaaaaaaaaataatttcagATA-------CAT-TT-TG-A----C-C-GC-GTATCA------GT------CTTC-TTAT--CT----AACA---------CAAA-AAG---CAA-TC-G-TA--C---TT-----TTT-TATGA-T-------AAT---AA---T-TTC-AA-CT--TC
gi|16 : GTG-A--TGCC-GC-A----------GCTC-A------GG----CAT--GCGA--GAG-----------ATGT-AGGGCAA-TTCGC-A--T-----T----T-T-TATAC-GCA-G-CA-AG-A-GCA-TCAGC-C--A-ACAC-TTCAAACTC-C-AC--AAC--ATGTC-T-TC-C-C--TCCCTCCAGG-CG--TT--GCC-G-AAA-TTG-TAG-T-TTAGGTG--CACAGTG--GT-----TCCGAAA-CATG----T--AG-C-------A-------CC-GCAA-CCTCA-AGTGTTAACATG-CTGTCGTCA--TT-C-TT-GTC-ATGGAA-TGATTGA--AAACA-CA-GCAT-G-TCG--TAATA-TTTCACTTTAT
gi|15 : TG-CTGTCGTCA--TTGT-TT-ATC-GCGGAAATAAGTGA--AAACA-CG-GCAT-G-TCG--TAATC-TTTTTTTTTTT-TTTCAAAT-AAA---AGAAAGAGCAA--T-CGTCTTTAG--TAAA--TTTGTCA-ATAAA-AATAAA-CA-----TT-T-AGCCCATA---TATT-TTATTTTTTTT-ATCTTA--T--AT---ATTTCA-T-TTG-AAG-ACT-CA-GATAGT--C-GCTGG-GG-T--A------TTA--C-GACATT--TGCAA--GATTTACTTCCGTTTCCACGAG-TCA-ATTTACG--TTAAAATCCTCATGA--TGCT-AA---GTtaa
gi|18 : TTAT-TTTTAGAT-AAATCAGGAAATAGCAAAATGCGTCTTG-G--T-ATACTTTGTCA-ATCAAGAATAAACTA-----TTTA-AGCC-A-A---TAAT-TTA--TTTTTTTAGCTCA--ACCATGGAATTTTA-T-TTG-AAGGACT-CGGCAGAAT---TGTTGGCGGAT--GTGATTATTAAAC-GACATT--AGTAATGGATTT-----------CCCATACTCGTAATTACG--TTTT-TTCGTCATGAATTTGT-AAATTGTCTTact
gi|20 : tttaTATTATAGAT-ATT---AAAAATAGCAA--TTCGTTTCT-GG-T-ATA-TTTGTCATAT----TCTATA-TA-----TT-ATAGCCAATA---ATAT-TTA--T------AGCTCATTA--AT---ATATT--TATTGCAAG-ACTTCG-CAGAAT---TGTTGG-GGAT--A------TTA--CGGACATT--AGTAA--GATT------------C-CGTACTCG-AATTACGGCTTTTTTCCGTCATGAC-TTGTCAAC--GTCTT
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TGAATACATGTAAACTAGCAGTATGAACTGCATTAGTAGTACTATGATACACAATTTGTTTTGGGTAAATATAGTACTTAATATTTTTGGGTTAATCCAATACAGTTATCAATTCCTGAACTGTCGATGTCACCGACAACTCGAATCAGTTGTTGTTTTACATGATATAATAATACCTATATGATCGAATCAGGAGTATCTTTTCAATATTGTAATTTGTGTCTTCGTACACATTCCGGGCAGGAAGAAAATTGTTTCGTGGTTTTCGTTCGACAGCAGCAAATTTAGTATCAAGCCCACTCATCCCAATAATTATTGATAATTTTCGGAAAAATTATATATATCAGTAATTAACTTTGGTCCGGCTCCCATACTCTGCGTGTCATTTTTCAGCTGGCACCATCTATTACATGCGACAATGTCACAGGAATTGATGGCATCGTACCTAAAAAAGATACTACACATAAATTACATGTAAAACTACTGAGATGGCTAAACTGAATCATAGTTATTTTCTTTTTTCTTTCATATCATCACAACGTCTACAGTATGATGCGAAAAAAATTTTCAGCACTAAGTTAGTGATTTATCATAATATATATCATAATAATATTATGAATATTGGACATTGGACACTGGCAACATATTGCTGGGATGAAATCAATTAAACAATTGAGCCCCCCTCCCCCCCCCCCCCCTTCCCCTGGCCCCACCGTAGTAGTACATGATTACCTGCACGATGTTAATAACTCACTATTTTCTTATTGTTAGGTCTATTGGATCTTGCGTATTAATCATAATTTGTTAGGGGTTGGGGGGCATTTTTTTTTTTTTGCTACTAGCTGTTATATTTTACACTGTACAAAAGAGCGGACAACTTTGAGGATGAAACAGGTTACTACTACTTATTAAATAATCAAAT
Unaligned ( gi|5 ): AGGTATCAATTAACATGTATGAATTGTCGATGTCACCGACAACTGAATCAGTTTGTTTCATCTGTGATTCCACTAAAGTTACATGTATATAATACTGTACGATCAAGTCAGGAGTATTTTTTTCATATTGTCATTTTGTTGTAACATTCCGGGCAGAAAAAATTGTTTCGTGTTTTTCTCTGACAGCAGCAACTGTGTATTTGTCTTAGTATCAGCCCACTCATTCCCAATAATTATTGAATAATTCGAAAATATATATACCAATAATAACTTTGTGTCGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTACATGCACAAGTCACAGGAATTGATGCATCGCACCTTTAAAAAAATAGCTACACATAATTACAGGTAACTCCTGAAATGCTAACTGAATCATATTTATTTCTTTTTTTCTTTCTATATCATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAAT
Unaligned ( gi|10 ): ATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAATAATAACTCTGTGTCGGATCCACCATTACTCTGCTTTGTCCATTTTCCAGTTGGCACATTATTACATCGACAAGTCAAGGAATTATTTGATGGCATCGACTTTAAAAAAATACTAACACATAATTACATGTTAATTGAATGCTAACTGATTCATATTTTAATTTTCTTTTTTCTTCTTTATATCAGTCTACAATATGAATGCAAAAAATGTTCAGCACCTAGTTTGTGATTATTCAGTGCTAATTTATATACTATTATAAATCATGAAATGGATGAAACATGAACACTAACTGCTGGGGTGAAAAATTTATAACAATGAGCCCCCCCCTACCTAGTATGTAGTCTGTCCCGTGCACATGTTTTATAACTCATATTTTCTTATTGTTAGGTAATATTGGATCTTGTGATTATCATAATTTTGCCTAGGTCAGAGGGTGGGGGCATTTTTTTTTTTGCTAGCTGTTATATTTTACAGACTGTACAAAAGAGCAGACAACTTGGAGGATTTAAAACAGGTTACTACTTTATTAACTATCAAAT
Unaligned ( gi|13 ): TGAATAAGAAAACCTGCAGGTATGACTGTCAACAGTAGTCACTATTCGATACCACAAATTTAGGGGTAATTTTATAGTCACTTACTAGTATTTTGGGTTAATCAATTACAGGTATCAATTCTGAATGTTGAGTGCACCGACAATGAATCCAGTTTGTTCATTTCTGTGATCCAGCTATATAGTACATGATATGAATAATACTGTATGATCAAGTCAGGAGTATTTTTTCATACCAATTGTCAATTTGTTGTAACATTTCGGGCAGAAAAATTTGTTTCATGTTTTTTCTGACAGCAGCAAATGTGTATGTTGTCTTAGTATCAGCCCACTCATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAGTAATTAACTTTGTGTCGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTCATGCGACAAGTCACAGGAATTAAATTATTGTCAGATGCATCGTACCTTAAAAAAATACTACACA
Unaligned ( gi|14 ): ATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
Unaligned ( gi|17 ): CCATAACAATGACCCCCCCCCTTCCTAGTAGTACATGCACCGTTCACATGTTTAAACTGATCTACATGTAATTTTCTAATTGTTAAAATAATAATGGATTTTCTGCTTATCAATATTTTTGATAGGGGTGGGGGTATTTTTTGCTAGCTAAGATTATATTTTACACTGTACAAAAGAGAGCGAACAACTTGAGGATATGGACAATTGACTACTGTAATTAAATTATCAAAT
Unaligned ( gi|21 ): CATCCCAATAATTTATTGATAATTCGAAAAATATATATACCATGTAGTCAACTTTGTGTTGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTACATGCGACAAGTCACAGGAATTATTGATGCATCATACCAAAAAAAAAAAAAAAAATACTACACATGATTACATGTAACTCTGAATGCTA
Unaligned ( gi|22 ): TATAGGTAACTCCCTAAATATATATATATACCTGTAGCTAACTTTGTGTTGGCATCCCATATTCTTCTGTGTCGTTTTCCAGTTGGAACATTGTTAACAAATTCGCAGGTAGTATTCATGCATCGTATCTAAAATATTATTACACACAATTACACATAACTCTGAATGCTAACTGAATCATAAT
Unaligned ( gi|24 ): AATCGCAGAGTTGTAGGGGTATTACTGATATTAGTAAGAGTTACTTCCTTTTGCACATACC
Alignments
lowQualScore : 11 1111111 33333333333333333 2222222 111111 111111 33333333 11 1111111 11 3333333333333333333 11 111 222 1111111 1111111 22222222 1111111 2222222222222 222222222222 111 111 11111 1111111 111 22222 111 88888888888888888888888888888888 111 11111 1 1111111111 11 1 1111111 444444444444444444444 1 11 11111 1111 2222 1 111 11 11111 111 111 11111 11111 1 1 2222222222222 222 11 1 222
lowQualScore : 0 8 1 66 1 1 5 5 0 5 7777 5 5 5 5 0 4444444 66666666666666666 66 8 1111111 4 4 4 4 4 4 1 4 66 3 888888 4 4 222222 4 4 33333333 66 4 4 00 4 4 7777777 777 55 22 3 6666666666666666666 4 4 4 2 66 88 4 66 4 555 4 4 4 111 4 4 000 4 99 0 44 3333333 4 4 4 3333333 4 4 11111111 4 4 8 99 99 4 7777777 0 55 4 4 4 55 55 2222222222222 4 4 111111111111 111 4 4 4 55 88 4 8 888 4 11111 777 4 4 66 0000000 777 66 222 4 4 66 00000 222 66 1 4 66666666666666666666666666666666 66 1 66 000 00000 3 4 1 4 4 66 1111111111 3 4 4 66 4 8 4 4 4 4 66 8 5 4 4 4 4 66 66 88 4 444 66 4 66 00 4 1 4 4 5 5 5 66 0 5 6666666 5 2 5 333333333333333333333 5 88 5 0 4 4 4 66 0 5 5 5 5 00 5 3 0 5 5 77 6 444 777 1 6 55555 3333 1 6 6 6 1111 6 3 6 2 111 6 55 33333 111 6 6 6 5 5 000 5 5 7 00000 44444 1 77 77 1 7777777777777 0 8 8 111 99 0 777
lowQualScore : . . . .. . . . . . . .... . . . . . ....... ................. .. . ....... . . . . . . . . .. . ...... . . ...... . . ........ .. . . .. . . ....... ... .. .. . ................... . . . . .. .. . .. . ... . . . ... . . ... . .. . .. ....... . . . ....... . . ........ . . . .. .. . ....... . .. . . . .. .. ............. . . ............ ... . . . .. .. . . ... . ..... ... . . .. ....... ... .. ... . . .. ..... ... .. . . ................................ .. . .. ... ..... . . . . . .. .......... . . . .. . . . . . . .. . . . . . . .. .. .. . ... .. . .. .. . . . . . . . .. . . ....... . . . ..................... . .. . . . . . .. . . . . . .. . . . . . .. . ... ... . . ..... .... . . . . .... . . . . ... . .. ..... ... . . . . . ... . . . ..... ..... . .. .. . ............. . . . ... .. . ...
lowQualScore : 8 0 4 22 0 7 0 0 1 0 1111 0 0 0 0 2 6666666 77777777777777777 11 9 4444444 4 4 4 4 4 4 0 4 11 6 444444 4 4 888888 4 4 22222222 11 4 4 66 4 4 3333333 888 66 22 6 6666666666666666666 4 4 4 0 11 33 4 11 4 333 4 4 0 666 4 4 666 4 11 1 88 0000000 0 0 0 0000000 0 0 66666666 1 0 0 55 55 0 0000000 8 55 0 0 0 55 55 7777777777777 0 0 888888888888 000 0 0 0 55 00 4 9 333 4 11111 888 4 4 11 2222222 888 11 222 4 4 11 00000 222 11 9 4 99999999999999999999999999999999 11 1 11 999 66666 3 4 9 4 4 11 6666666666 7 4 4 77 4 9 4 4 4 4 11 9 2 4 4 4 4 11 11 66 4 999 11 4 11 66 4 9 4 4 0 0 0 99 0 0 2222222 0 5 0 999999999999999999999 0 22 0 4 4 4 4 99 0 0 0 0 0 00 7 0 7 7 7 99 7 777 111 7 7 88888 5555 0 7 7 7 5555 7 3 7 5 777 7 88 77777 777 7 7 7 7 7 000 7 7 1 44444 33333 4 99 99 9 7777777777777 8 2 0 666 00 0 555
consensus : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CCA--CATT-AC-A-----GCA-A-TA-AGCGT-A-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CC-AAATG-TG--C--A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--ACAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCGG-CAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-G-A--TCAGGT-GTCAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-ACAAAGAATAAA-CA-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
Reference ( family-3203 ) : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CN-AAAAA--T--------------CCA--CATT-AC-A-----GCA-A-TA-AGCGT-A-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CC-AAATG-TG--N--A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATTTAACAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCGC-CAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------NT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-A-A--TCAGGT-GTCAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AAAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-ATAAAGAATAAA-TA-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
gi|11 : --T--------------CCA--CATT-AT-AATGGTGCA-AATA-TTGGT-A-TGCTTGTT-G--AAAAGATGA-TGTAT-ATATAAACCAATCC-AAATG-TG--TGCA--CACTG--GCTACACA-TAA-GG-AAT-CTAG----TT---TTGTTTGATTGATTTA-CAGTCTAGAGCATAATAG-TGAA-GGCATATA--T--TA-CCCG--A-GTT-AATCAT-CTT-CATAA-CATAAT-GGGC--AT-GTATCCA-TAAACACAACATATT-TGCA--C----AAGCG-TATCAATAGC--TCTTCT-T-TTCCT--AA-CAACATGATCACAAAG--CTAACTT-G--TA--C---------TTGATTTT-AAT------GA----AATAA---T-TTT-AAACTATTCAATTCAA-TTGAA---TT-TGATTACC---AA-A-C---TTAA---T-ATATCACGCAAGA--CAGATA-CCCAAA-G--TTCGCC-TCGTGAGCAT--ATC-GC--A-G---CTC-GC------A--TCAGG----CAT--GCGA--GGAACTGCTATGC-AGGT-AGGGCAAGCTC-GCAA--TCTTAAT----TCTATA-AC-GCA-GACG-A--A-GCA-TCAGC-CTAA-ACA-T-CCCAACTC-CAAC-A--AC--ATGTCTT-CA-TAC--TCCCTCC-GG-CGTTTT--GCTAAAAATT-G-
gi|12 : TAACT-CTAATAAAA---GATTGAGAGC-T-TCAAATTT--ACCAA-CA-TG-T-GTAGACTCC----C--AAAAA--T--------------CCA--CATT--C-A-----GCA-A-TA-AGTGTAA-TG-TAGTT-G--G-AA----A-TAT-T-ATTTAA------CCAAAATC-TG--------CACTG--TTCA-ACA-TA--GG-GAT-T--GT---TT---T-GTT--G-TGATT--ACAG----GA------TAG-TGAA-G-CATTTC--TTAAA-CCCGTTA-GTT---TC-T-ATT-acaatcaaaaagttataaacaaagatgcaacagtggcttaagctga
gi|15 : gatcttgtgattatcataattttgcctaggtcagagggtgggggcatttttttttttgctagctgttatattttacagactgtacaaaagagcagacaacttggaggatttaaaacaggttactactttattaactatcaaattggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgtagcT-G-C-TGTCGTCA--TTGT-TT-ATC-GCGGAAATAAGTG-AAAACA-CGGCAT-G-TCG--TAATC-TTTTTTTTTTT-T-TTCAAAT-AAA---AGAAAGAGCAA--T-CGTCTTTAG-TAAA-TTTGTCA-ATAAA-AATAAA-CA-TT-TAGCCCATA---TATT-TTATTTTTTTTATCTTA--T--AT---AT-TTC-ATTTGAA-GACT-C-AGAT---AGT-CGCTGG-GG-T---A-TT-----AC-GACATT--TGCAA--GATTTACTTCCGTTTCCACG-AGTCA-ATTTACG--TTAAAATCCTCATGA--TGCT-AA---GTgtgtagccgaaaatataataacaattgatatctgttgttccctacttaacaagtggcagacaa
gi|16 : GTG---AT--GCC-GC-A----------GCT-C-A-------GG----CAT--GCGA--GAG-----------ATGT-AGGGCAA-TTC-GC-A--T-----T----T-T-TATAC-GCA-G-CA-AG-A-GCA-TCAGC-C--A-ACACT-TCAAACTC-C-AC-A--AC--ATGTC-T-TC-C-C--TCCCTCCAGG-CG--TT--GCC-GAAATT-G-TAGT-TT-AG-G--T-GCACAGTGG-T-------TCCGAAA-CATG----T--AG-C-------A-------CC-GCAA-CCTCA-AGTGTTAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ATGGAA-TGATTG-AAAACA-CAGCAT-G-TCG--TAATA-TTTCACTTTAT-T-act
gi|18 : TTAT-T-TTTAGAT-AAATCAGGAAATAGCAAAATGCGTCTT-GG-TATACTTTGTCA-ATCAAGAATAAACTA-TT-TAAGCCA-A---TAAT-TTAT-TTTTTTAGCTCA--ACCATGGAAT-TTT-ATTTGAAGGACT-CGGCAG---AAT-TGTTGGCGGATGTGA-TTATTAAAC-GACATT--AGTAATGGATTT-----------CCCATACTCGTAATTACG---TTTTTTCGTCATGAATTTGT-AAATTGTCTTaa
gi|19 : ttta-CATT--TTTA-T-GCGG-CAT-G--CCCA-TA-------TAT-TT-GG-A--C----C-GTG-TATCAGTATCAGTCTTCT-T-TT-CT--AA-CA-------CAAAAAG--C-AA-TT-G--CA--C---------TT--TTTT-A-T------GA--T-AATCA---T-TCC-AA-CT--T-CATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-G-ATGGC---AGA--CA---A-CCCAAA-G--T
gi|2 : gttcaaatcataaacatctgaaattatcttttaatctttaaaaaaaaataatttcagGAGCTA--ACT-CTAATAAA--CTGATTGAAAGC-T-T--G-TTT--ACAAA-CA-TA-T-GTAGATTCA----AA-AAAAA--AAAAAAAAAAAAAAACCA--CAAT-AC-------GCATA-TA-A-------TGTCAGTT-ACTGGAA----A-TGT-T-ATTTAA------CC-AAATG-TG--------CACTG--TTCA-GCA-TA--GG-AAT-T--A----TC---T--TT--GTTGAT--------------------AA-TGAA-G-C---------------------GTT-A-TC-T-CGT-CATA--TTTA-T-GCCCACAT--T-CCTC-TC-------CAT-TT-TG-A--CAGTCT-GTG-TATCAGT----------TAT-T--CT--AA-CA-------CAAAAAG--C-TA-TT-G--TA--C---------TT--TTTT-A-T------AA--T-AATCA---T-TAG-AA-CT--TC-ATTCAA-T-AAA---TT-T-----TC---AA-A-C--CTTTA---T-A-ATGGC---AGA--CA---A-TCCAAA-G--TT-G-----GTG---AT--GTC-GC-AG-G---C------------------GT-GT-----------GAA--AGCT---G-A-AT-GGGTAAA-C-C-GC-A--T-----T----TTT-TACAC-CCT-G-CG-AG-G-GCA-TCAGC-T--A-ACACC-CCCAACTC-A-AC-A--AC--ATG-CCT-CC-C-C--TCCCTCCAGT-CG--TT--GCT-AAAATT-G-TAGT-TC-GG-G--T-GCACAGTGT-CGTCTGTATCTGAGA-CTCGA-TA-------------------------GCA----TCG-AGCATAAACAT-G----ATCGT
gi|20 : catcgtatctaaaatattattacacacaattacacataactctgaatgctaactgaatcataatttaaaatgatttttgataataaattttgacaacagatatgctgggaggcaattaaataacaatgagctgccctcctatctctttgtagtacatgtaccttgcacatgtttagagctcctattttcttattgttaataacttgtgaatatatcaataattttggaaggggtggggcatttttgataaatgtacataaattataaaagaggggcagcttaaagatttaggcaggtgacttagactactattttataataatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggTTAT-T-AT-AGAT-ATT---AAAAATAGCAA--TTCGTTTCTGG-TATA-TTTGTCATATTC----TATA-TA-TTATAGCCAATA---ATAT-TTA--T-----AGCTCATTA--AT---ATATTT-ATTGCAA-GACTTC-GCAG---AAT-TGTTGG-GGAT---A-TT-----ACGGACATT--AGTAA--GATTC-------------CGTACTCG-AATTACGGCTTTTTTCCGTCATGAC-TTGTCAAC--GTCTTtgtaa
gi|23 : ttaaA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AA-CA-------CAAAAAG--C-AA-TC-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TC
gi|24 : T-C-GCAG---AGT-TGTAGG-GG-T---A-TT-----ACTGATATT--AGTAA--GAGTT-----------
gi|3 : aaGAGCTATAACT-CTAAAAAAAACAGATTGA-AGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CC-AAAAA--T--------------CCA--CATT-ACTA-----GCA-A-T--AGCAT-A-TGTTAGTT-G--GAAA----A-TAT-C-ATTTAA------CC-AAATG-TG--A--A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGACTTAACAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG---AT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--CCTTCT-T-T--CT--AA-CA-------C-AAAAG--T-AA-TT-G--TA--C---------AT--TTTT-A-T------TA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AACA-C--CTTAA---T-A-ATCGC---AGA--CA---ACTCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTCAGCT-CAA-A--TCAGGT-GTCAT--GCGA--GGA--TGCT---C-ATGT-GAGGCAA-TTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACA-T-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-G-AATT-G-CAGT-TT-GG-G--TGGCACAGTGGCC-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGT-AACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTT-GAATCA-CGGCAT-G-TCG--TAATA-TTTCACTTTATAT-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTT-G-CAT--TTTGTCA-AC----AATAAA-TA-TT-AAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT--TTTGAA-GACT-C-GCAG---AATCTGTTGG-GGAT---ACTT-----AC-GACATT--AGTCA--GA-TT-----------CACGTA-TCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTTacttccttttgcacatacc
gi|4 : TATAACTTCTAAATAAAACAGATTGAGAGCTT-CCAA-TTT---CAAA-CA-TG-T-GCAGACCCC----CA-AAAAA--T--------------CCA--CATTAAC-A-----GCA-A--A-AGCAT-A-TGTTAGTT-G--G-AA----A-TAT-C-ATTTAA------CC-AAATG-TGGAA--A--CACTG--TTC--ACA-TA--GG-AAT-T--G----TTTTCT-GTT--G-TGATT--ACAG----GA-C----TAG-TGAA-G--ATTTC--TTAAA-CCGG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG--CAT-GT--CCA-TA-------CTA-TT-TG-A--C----C-GCG-TATCAGT--C--TCTT-T-C-T--CTA-AA-CA-------C-AAAAG--T--A-TT-G--AT--C---------CA--TTTT-A-T-------A--T--ATAA---T-TTC-AA-CT--TTC-TTCAA-T-GAAT--TT-T-----TC---AA-A-C--CTTAA---TGA-ATCGC---AGA--CA---A-TCCGAA-GCTTTCGCG-TCGTGT--AT--G-C-GC-AAGG---CTCAGCCAC-A-A--TCAGG----CAT---CGA--GGA--TGCT---CGATGT-AGGGCAA-TTC-GC-A--T-----T----CTT-TACAC-GCA-G-CG-AG-A-GCATTCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGT-CT-TC-T-C--T-CCTCCA-G-CG--TT--GCT-GAAATT-G-CAG--TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGACTGTTAG--T-------A-------CC-GCAA-CCTCG-AGTGTAAAC-T-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATT
gi|6 : gatctgccgattatcgaattaattttgctagggtgtgggggcattttttttgcactagctgttattttgtacactgtacaaaagagcggaacaacttgaggatatgaaacatgttacttactactttattaaagtaatcaaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttccttcagagagacccaAAC-T-CTAA-TT---A-AAA-CA-GA-T-T--GATACC----CC-AAAAA--TTC------------CCA--CATT-AC-A-----GCA-A-TA-AGTGT-A-TGTTAGTT-G--GAA-------TAT-T-ATTTAA------CC-AAATT-GG--C--AT-CACTCATTTCA-AC--TA--GGGAAT-T--T----TT---T-GTT--GTTGAT---ACAG----GA-T----TAG-TGAAAG-CATTCT--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATG--CTTA-T-GCGG-CAT-GT-CC-A-TA-------CAT-TT-TG-AGGC----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AAACAA------CAAAAAG--C-AA-TC-GCATA--C---------TT--TTTTTA-TTTGGGGGAATT-AA-GA---TATTC-AA-CT--TC-ATTCAA-T-GAA---TT-T-----TC---AA-AAC--CTTAA---T-A-CTCGC---AAA--CA---A-TC--AA-A--TT------------------CC-GC--------------------------GGTCGTGA---GCGA--GGA--TGCT---C-ATGTAGGGGCAA-C-C-GC-ACTT-----T----TCT-TATAC-GCACG-CGCAGCA-GCA-TCTGC-C--AGACATT-CCCAACTC-C-AC-A--A---ATGTCGT--C-T-C--TCC-TCCAGA-CG--TTT-GCT-GAAATT-G-TTAT-TG-GGTG--T-GCACAGTGG-C-------TCCGAAA-CAT-A-TAC--A--TTCACAGCA-------CC-GCA---CTCG-AGTG-AAACAT-G-C-TGTCGTCA--TT-C-TC-GTC-ACGGAA-TGATTGAAAAACA-CGG-AT-GTTCT--TAATATTTTCACCATAT-TATTTAAATAAAA---AAAAATAGCAA--T-CGTCTTTGGTTATA-TTTGCCA-ACAAGAAATAAA-CATTT-TAG-CCATATTCTAATCTTA---TGTTTAGCTCC--A--AT---AT-TTTAATTTGAA-AACT-A-GCAG---AAT-TGTTGG-GGAT---T-GA-----AC-GACATTGCAGTAA--GA-TT-----------CACGTATTCG-AATTACG---TTTTTTCGTCATGA--
gi|7 : agctTAACT-CTAATAAAA-CAGATTGAAAGC-T-TC---------CGAA-CA-TG-T-GCGGACTCC----CA-AGAAAACT--------------TCA--AAAT-AC-A-----ACA-A-TA-AGTGT-A-AGTTAGTT-G--GAAA------TAT-T-ATATAA------CC-AAATG-TG--C--A--CACTG--CTCA-ACATTA--GG-AAT-T--G----TT---T--TG--GTTGATT--ACAG----GA-------AGTTAAA-T-CATTTC--TTCAA-CCCG--A-GTT-A-TC-T-C-T-CATAGCTTTA-T-GCGG-CAT-GT---CATTA-------CA--TT-TG-A-------T-GCG-GATCAGT--CGTTCTT-T-T-T--CT--AA-CG-------TAGCAAG--C-AA--T-G--T---T---------AA--TATT-A-T------GA--TAAATCA---T-TTA-AA-CA--T-CATCAAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA-----A----GC---AGA--CA---A-TCCAAA-G--TT------------------------AA-G---TTC-----T-G-A--GCA--T-ACCAT--GCCA--GAG-----------ATGTAGGGGCAA-CTC-GC-A--T-----T----TCA-TACAC-GCA-G-CG-TG-A-GCA-TCAGC-C--A-ACATT-CCCAAATC-C-AC-A--AC--ATGT-CT-TC-C-T--TCCCTCCAGG-CG--TA--GCT-GAAATT-G-TAGT-TT-AA-G--T-GCACAGTGG-C-------TCCGAAG-CATGA-TGT--AG-C-------A-------CC-GCAA-CCTCG-AGTGCAAACACGG-CATGTCGTAA--TA-T-T---TC-AC--------TT-----------------------TATTA-TTTCAA---AT-----TAAA--AAA------AATTGCAA--T-CGTCTTTGG-TATA-TTTGTCA-ACAAAGAATAAA-CATTT-TAGCCCATC---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TGT-ATTTGAA-GACT-C-GCAGAATAAT-TGCTGG-GGGT---A-TT-----AC-GACATT--AGTAA--GAGTT-----------
gi|8 : agcAGAGC-TTCCAA-TTT--ACAAAACAGTG-TAGCAGACTCCGCGCCA-AAAAAA-T--------------CCATCCATT-AA-GAAG--GCA-A-TAGAGTGC-AATGTTGGTTTG--GAGA----AGTAT-T-ATTAAT------CC-AAATGCTG--C--AAGCACTG--TTCA-ACA-TACAGC-GATGT--T----TT---T-GTT--GTTGATTAATCAG----GA------TAG-TGAA-G-CATTTCCTT--AA-CCCG--ATGTTGA-TC-TTCTT-CAT---CTTA-T-GCGG-CATTGT-CCAA--A-------CAT-CTATG-A--C----C-GCG-TACAAGT--C--T--TCT-T-T--CCTAAA-CA-------CAAAAAAGCC-AA-TT-G--TAGTC---------TTG-TTTT-A-T------CA----AATAAATTT-TTCGAA-CT--TGCATTCAA-TTGAAGCTTTGT-----TCCGAAA-G-CGGCTTAACATT-A-ATCGC---AGAAGCAG--A-TCCTAATG--TTCGCGGTCGTG---ATCTGCCAGC-AA-GAACTTC-GCT-C-G-AGATAAG-----CAT--GCGAAGGGA--TGCT---C-ATGTAGGGGCAA-CTCCGC-A--T-----TGTGCTTT-CACAC-GC--G-CG-AG-A-GCA-TCAGCTC--A-ACATTTCCCAACTCGC-AC-AGAACTAGTGTTCTCTCGT-C--ACCTCCCAGG-CG--TCTGGCT-GAAATTTG-TAGT-TTTGG-G--TTGCACATTTG-C-------TCCGAAG-CATGA-TGT--ACGT-------A-------CCTGCAATCCTCG-AGTGTAAACAT-GCC-TGTCGTCAGTTT-C-TTAGTC-ACGGGA-TGACTT-GAAACG-C-GCAT-G-TCG--TAAacttcccttttcatgtatc
gi|9 : tgaTTGAGAGC-T-CCAA-CTTTAACAAA-CA-TGCT-GCAGACTCC----CCCAAAAA--T--------------CCA--CATTTAC-A-----GCA-A-TA-AGTGC-A-TGTT-GTT-G--GAAA------TAT-TCATTTAA------CC-AAATG-TG--CC-A--CACTG--TTCA-ACA-TA--GC-AAT-T--GGTTCTT---T-GTTCTGCTTATT--ACAG----GAAC----TAG-TGAA-G-CAT--C--T--AAACCCG--A-GTT-A-TC-T-CTTACATA--CTTA-TTGCGC--AT-GA-TCCA--A-------AAT-TT-GG-A--CG---C-GCGGTATCAGT--C--TTTCTT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TTGG--TA--CCATGTTTCTTT--TTTC-A-T----------T-AATAAT--T-TTC-AA-CT--TCCATTCAAGT-GAATT-TT-T-----TC---AA-A-C--CTTAA---T-AGATCGC---AGA--CA---A-TCCAAA-G--TTCGCGTTCGTG---AT--GCC-GCGAA-A---CTA-GCT-C-AGA--TCA----GTCATTAGC-A--GGA--TGCT---C-ATGA-GGGGGAA-CTC-GT-A--T-----T----TGT-T-CACGGCT-G-CGAAG-AGGCA-TCAGC-C--AGACATT-CCCAACTC-C-ACAA--AC--ATGT-CT-TC-T-CGTTCCCTCCAGGCCG--TT--GCT-G-AATT-GATAGTGGT-GG-GCAT-GCACA-TTG-C-------TCCGAAACCAT-A-TGT--A--T-------AGGTTTACCC-GCAA-CCTCGAAGTGTAAACAT-G-C-TGC--TCA--TTACATT-GTCAACGGAA-TGATTG-AAAACACCGGCATGG-TCGCTCAATC-TTTT-TTTTAT-T-Tat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAATACATGTAAACTAGCAGTATGAACTGCATTAGTAGTACTATGATACACAATTTGTTTTGGGTAAATATAGTACTTAATATTTTTGGGTTAATCCAATACAGTTATCAATTCCTGAACTGTCGATGTCACCGACAACTCGAATCAGTTGTTGTTTTACATGATATAATAATACCTATATGATCGAATCAGGAGTATCTTTTCAATATTGTAATTTGTGTCTTCGTACACATTCCGGGCAGGAAGAAAATTGTTTCGTGGTTTTCGTTCGACAGCAGCAAATTTAGTATCAAGCCCACTCATCCCAATAATTATTGATAATTTTCGGAAAAATTATATATATCAGTAATTAACTTTGGTCCGGCTCCCATACTCTGCGTGTCATTTTTCAGCTGGCACCATCTATTACATGCGACAATGTCACAGGAATTGATGGCATCGTACCTAAAAAAGATACTACACATAAATTACATGTAAAACTACTGAGATGGCTAAACTGAATCATAGTTATTTTCTTTTTTCTTTCATATCATCACAACGTCTACAGTATGATGCGAAAAAAATTTTCAGCACTAAGTTAGTGATTTATCATAATATATATCATAATAATATTATGAATATTGGACATTGGACACTGGCAACATATTGCTGGGATGAAATCAATTAAACAATTGAGCCCCCCTCCCCCCCCCCCCCCTTCCCCTGGCCCCACCGTAGTAGTACATGATTACCTGCACGATGTTAATAACTCACTATTTTCTTATTGTTAGGTCTATTGGATCTTGCGTATTAATCATAATTTGTTAGGGGTTGGGGGGCATTTTTTTTTTTTTGCTACTAGCTGTTATATTTTACACTGTACAAAAGAGCGGACAACTTTGAGGATGAAACAGGTTACTACTACTTATTAAATAATCAAAT
Unaligned ( gi|5 ): AGGTATCAATTAACATGTATGAATTGTCGATGTCACCGACAACTGAATCAGTTTGTTTCATCTGTGATTCCACTAAAGTTACATGTATATAATACTGTACGATCAAGTCAGGAGTATTTTTTTCATATTGTCATTTTGTTGTAACATTCCGGGCAGAAAAAATTGTTTCGTGTTTTTCTCTGACAGCAGCAACTGTGTATTTGTCTTAGTATCAGCCCACTCATTCCCAATAATTATTGAATAATTCGAAAATATATATACCAATAATAACTTTGTGTCGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTACATGCACAAGTCACAGGAATTGATGCATCGCACCTTTAAAAAAATAGCTACACATAATTACAGGTAACTCCTGAAATGCTAACTGAATCATATTTATTTCTTTTTTTCTTTCTATATCATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAAT
Unaligned ( gi|10 ): ATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAATAATAACTCTGTGTCGGATCCACCATTACTCTGCTTTGTCCATTTTCCAGTTGGCACATTATTACATCGACAAGTCAAGGAATTATTTGATGGCATCGACTTTAAAAAAATACTAACACATAATTACATGTTAATTGAATGCTAACTGATTCATATTTTAATTTTCTTTTTTCTTCTTTATATCAGTCTACAATATGAATGCAAAAAATGTTCAGCACCTAGTTTGTGATTATTCAGTGCTAATTTATATACTATTATAAATCATGAAATGGATGAAACATGAACACTAACTGCTGGGGTGAAAAATTTATAACAATGAGCCCCCCCCTACCTAGTATGTAGTCTGTCCCGTGCACATGTTTTATAACTCATATTTTCTTATTGTTAGGTAATATTGGATCTTGTGATTATCATAATTTTGCCTAGGTCAGAGGGTGGGGGCATTTTTTTTTTTGCTAGCTGTTATATTTTACAGACTGTACAAAAGAGCAGACAACTTGGAGGATTTAAAACAGGTTACTACTTTATTAACTATCAAAT
Unaligned ( gi|13 ): TGAATAAGAAAACCTGCAGGTATGACTGTCAACAGTAGTCACTATTCGATACCACAAATTTAGGGGTAATTTTATAGTCACTTACTAGTATTTTGGGTTAATCAATTACAGGTATCAATTCTGAATGTTGAGTGCACCGACAATGAATCCAGTTTGTTCATTTCTGTGATCCAGCTATATAGTACATGATATGAATAATACTGTATGATCAAGTCAGGAGTATTTTTTCATACCAATTGTCAATTTGTTGTAACATTTCGGGCAGAAAAATTTGTTTCATGTTTTTTCTGACAGCAGCAAATGTGTATGTTGTCTTAGTATCAGCCCACTCATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAGTAATTAACTTTGTGTCGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTCATGCGACAAGTCACAGGAATTAAATTATTGTCAGATGCATCGTACCTTAAAAAAATACTACACA
Unaligned ( gi|14 ): ATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
Unaligned ( gi|17 ): CCATAACAATGACCCCCCCCCTTCCTAGTAGTACATGCACCGTTCACATGTTTAAACTGATCTACATGTAATTTTCTAATTGTTAAAATAATAATGGATTTTCTGCTTATCAATATTTTTGATAGGGGTGGGGGTATTTTTTGCTAGCTAAGATTATATTTTACACTGTACAAAAGAGAGCGAACAACTTGAGGATATGGACAATTGACTACTGTAATTAAATTATCAAAT
Unaligned ( gi|21 ): CATCCCAATAATTTATTGATAATTCGAAAAATATATATACCATGTAGTCAACTTTGTGTTGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTACATGCGACAAGTCACAGGAATTATTGATGCATCATACCAAAAAAAAAAAAAAAAATACTACACATGATTACATGTAACTCTGAATGCTA
Unaligned ( gi|22 ): TATAGGTAACTCCCTAAATATATATATATACCTGTAGCTAACTTTGTGTTGGCATCCCATATTCTTCTGTGTCGTTTTCCAGTTGGAACATTGTTAACAAATTCGCAGGTAGTATTCATGCATCGTATCTAAAATATTATTACACACAATTACACATAACTCTGAATGCTAACTGAATCATAAT
Alignments
lowQualScore : 1 111111 1111 333333333333333333 2222222 222222 111111 1111111 11 1111111 11 111 222222 11 111 1111111 1111111 22222222 1111111 2222222222222 222222222222 111 111 11111 1111111 111 88888888888888888888888888888888888888888888888888888 111 11111 1 1111111111 11 1 1111111 444444444444444444444 1 11 1111 1111 2222222 1 111 11 11111 111 111 11111 11111 1 1 2222222222222 222 11 1 222
lowQualScore : 6 1 6 5 000000 777 2 5 5 5 5 0000 5 000000000000000000 4 66 8 1111111 4 4 4 4 8 1 4 66 333333 4 4 222222 4 4 3333333 1 66 4 4 00 4 4 7777777 777 55 22 3 222 66 9999 999999 4 4 4 2 66 88 4 66 4 555 4 4 4 111 4 4 77 4 99 0 44 3333333 4 4 4 3333333 4 4 11111111 4 4 8 99 99 4 7777777 0 55 4 4 4 55 55 1111111111111 4 4 111111111111 111 4 4 4 55 88 4 8 888 4 11111 777 4 4 66 0000000 777 66 222 4 4 66 33333333333333333333333333333333333333333333333333333 66 1 66 000 00000 3 4 1 4 4 66 1111111111 3 4 4 66 4 8 4 4 4 4 66 8 5 4 4 4 4 66 66 88 4 444 66 4 66 00 4 1 4 4 5 5 5 66 0 5 6666666 5 2 5 333333333333333333333 5 88 5 0 4 4 4 66 0 5 5 5 5 00 5 3 0 5 5 77 6 444 777 1 6 3333 3333 1 6 6 6 5555555 6 3 6 2 111 6 55 33333 111 6 6 6 5 5 000 5 5 7 00000 44444 1 77 77 1 7777777777777 0 8 8 111 99 0 777
lowQualScore : . . . . ...... ... . . . . . .... . .................. . .. . ....... . . . . . . . .. ...... . . ...... . . ....... . .. . . .. . . ....... ... .. .. . ... .. .... ...... . . . . .. .. . .. . ... . . . ... . . .. . .. . .. ....... . . . ....... . . ........ . . . .. .. . ....... . .. . . . .. .. ............. . . ............ ... . . . .. .. . . ... . ..... ... . . .. ....... ... .. ... . . .. ..................................................... .. . .. ... ..... . . . . . .. .......... . . . .. . . . . . . .. . . . . . . .. .. .. . ... .. . .. .. . . . . . . . .. . . ....... . . . ..................... . .. . . . . . .. . . . . . .. . . . . . .. . ... ... . . .... .... . . . . ....... . . . . ... . .. ..... ... . . . . . ... . . . ..... ..... . .. .. . ............. . . . ... .. . ...
lowQualScore : 7 3 5 0 555555 000 0 0 0 0 0 6666 0 999999999999999999 4 11 9 4444444 4 4 4 4 9 0 4 11 999999 4 4 888888 4 4 8888888 9 11 4 4 66 4 4 3333333 888 66 22 6 444 11 4444 666666 4 4 4 0 11 33 4 11 4 333 4 4 0 666 4 4 33 4 11 1 88 0000000 0 0 0 0000000 0 0 66666666 1 0 0 55 55 0 0000000 8 55 0 0 0 55 55 5555555555555 0 0 888888888888 000 0 0 0 55 00 4 9 333 4 11111 888 4 4 11 2222222 888 11 222 4 4 11 44444444444444444444444444444444444444444444444444444 11 1 11 999 66666 3 4 9 4 4 11 6666666666 7 4 4 77 4 9 4 4 4 4 11 9 2 4 4 4 4 11 11 66 4 999 11 4 11 66 4 9 4 4 0 0 0 99 0 0 2222222 0 5 0 999999999999999999999 0 22 0 4 4 4 4 99 0 0 0 0 0 00 7 0 7 7 7 99 7 777 111 7 7 3333 5555 0 7 7 7 7777777 7 3 7 5 777 7 88 77777 777 7 7 7 7 7 000 7 7 1 44444 33333 4 99 99 9 7777777777777 8 2 0 666 00 0 555
consensus : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GA--TCAGGTG-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
Reference ( family-3203 ) : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GA--TCAGGTGTCAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
gi|11 : --T--------------CC-A--CATT-AT-AATGGTGCA-AATA-TTGGTA-TGCTTGTT-G--AAAAGATGA-TGTAT-ATATAAACCAATCCAAA-TG-TGTGC-A--CACTG--GCTACACA-TAA-GG-AAT-CTAG----TT---TTGTTTGATTGATTT-A--CAGTCTAGAGCATAATAG-TGAA-GGCATATA--T--TA-CCCG--A-GTT-AATCAT-CTT-CATAA-CATAAT-G-G-GCAT-GTATCCA-TAAACACAACATATT-TGCA--C----AAGCG-TATCAATAGC--TCTTCT-T-TTCCT--AA-CAACATGATCACAAAG--CTAACTT-G--TA--C---------TTGATTTT-AAT------GA----AATAA---T-TTT-AAACTATTCAATTCAA-TTGAA---TT-TGATTACC---AA-A-C---TTAA---T-ATATCACGCAAGA--CAGATA-CCCAAA-G--TTCGCC-TCGTGAGCAT--ATC-GC--A-G---CTC-GC-----A--TCAGG---CAT--GCGA--GGAACTGCTATGC-AGGT-AGGGCAAGCTC-GCAA--TCTTAAT----TCTATA-AC-GCA-GACG-A--A-GCA-TCAGC-CTAA-ACA-T-CCCAACTC-CAAC-A--AC--ATGTCTT-CA-TAC--TCCCTCC-GG-CGTTTT--GCTAAAAATT-G-
gi|12 : TAACT-CTAATAAAA---GATTGAGAGC-T-TCAAATTT--ACCAA-CA-TG-T-GTAGACTCC----CA-AAAA---T--------------CC-A--CATT--C-A-----GCA-A-TA-AGTGTAATGT-AGTT-G--GAAA------TAT-T-ATTTAA------CCAAAATC-TG--C-A--C--TG--TTCA-ACA-TA--GG-GAT-T--GT---TT---T-GTT--G-TGATT--A--CAG----GA------TAG-TGAA-G-CATTTC--TTAAA-CCCGTTA-GTT---TC-T-ATT-acaatcaaaaagttataaacaaagatgcaacagtggcttaagctga
gi|15 : gatcttgtgattatcataattttgcctaggtcagagggtgggggcatttttttttttgctagctgttatattttacagactgtacaaaagagcagacaacttggaggatttaaaacaggttactactttattaactatcaaattggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgtagcT-G-C-TGTCGTCA--TTGT-TT-ATC-GCGGAAATAAGTG-AAAACA-CGGCAT-G-TCG--TAATC-TTTTTTTTTTT-T-TTCAAAT-AAA---AGAAAGAGCAA--T-CGTCTTTAG-TAAA-TTTGTCA-A--TAAA-AATAAAC-A-TT-TAGCCCATA---TATT-TTATTTTTTTTATCTTA--T--AT---AT-TTC-ATTTGAA-GACT-C-AGAT---AGT-CGCTGG-GG-T---A-TT-----AC-GACATT--TGCAA--GATTTACTTCCGTTTCCACG-AGTCA-ATTTACG--TTAAAATCCTCATGA--TGCT-AA---GTgtgtagccgaaaatataataacaattgatatctgttgttccctacttaacaagtggcagacaa
gi|16 : GTG---AT--GCC-GC-A----------GCT-C-------AGG---CAT--GCGA--GAG-----------ATGT-AGGGCAA-TTC-GC-A--T-----T----T-T-TATAC-GCA-G-CA-AG-A-GCA-TCAGC-C--A-ACACT-TCAAACTC-C-AC-A--AC--ATGTC-T-TC-C-C--TCCCTCCAGG-CG--TT--GCC-GAAATT-G-TAGT-TT-AG-G--T-GCACAGTGG-T-------TCCGAAA-CATG----T--AG-C-------A-------CC-GCAA-CCTCA-AGTGTTAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ATGGAA-TGATTG-AAAACA-CAGCAT-G-TCG--TAATA-TTTCACTTTAT-T-act
gi|18 : TTAT-T-TTTAGAT-AAATCAGGAAATAGCAAAATGCGTCTT-GG-TATACTTTGTCA-A--TCAAGAATAAACTA-TT-TAAGCCA-A---TAAT-TTAT-TTTTTTAGCTCA--ACCATGGAAT-TTT-ATTTGAAGGACT-CGGCAG---AAT-TGTTGGCGGATGTGA-TTATTAAAC-GACATT--AGTAATGGATTT-----------CCCATACTCGTAATTACG---TTTTTTCGTCATGAATTTGT-AAATTGTCTTaa
gi|19 : ttta-CATT--TTTA-T-GCG-GCAT-G--CCCA-TA-------TAT-TT-GG-A--C----C-GTG-TATCAGTATCAGTCTTCT-T-TT-CT--AA-CA-------CAAAAAG--C-AA-TT-G--CA--C---------TT--TTTT-A-T------GA--T-AATCA---T-TCC-AA-CT--T-CATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-G-ATGGC---AGA--CA---A-CCCAAA-G--T
gi|2 : gttcaaatcataaacatctgaaattatcttttaatctttaaaaaaaaataatttcagGAGCTA--ACT-CTAATAAA--CTGATTGAAAGC-T-T--G-TTT--ACAAA-CA-TA-T-GTAGATTCA----AA-AAAAA--AAAAAAAAAAAAAAACC-A--CAAT-AC-------GCATA-TA-A------TGTCAGTT-ACTGGAA----A-TGT-T-ATTTAA------CCAAA-TG-TG--C-A--C--TG--TTCA-GCA-TA--GG-AAT-T--A----TC---T--TT--GTTGAT----------------------AA-TGAA-G-C---------------------GTT-A-TC-T-CGT-CATA--TTTA-T-GCCCACAT--T-CCTC-TC-------CAT-TT-TG-A--CAGTCT-GTG-TATCAGT----------TAT-T--CT--AA-CA-------CAAAAAG--C-TA-TT-G--TA--C---------TT--TTTT-A-T------AA--T-AATCA---T-TAG-AA-CT--TC-ATTCAA-T-AAA---TT-T-----TC---AA-A-C--CTTTA---T-A-ATGGC---AGA--CA---A-TCCAAA-G--TT-G-----GTG---AT--GTC-GC-AG-G---C-----------------GTGT-----------GAA--AGCT---G-A-AT-GGGTAAA-C-C-GC-A--T-----T----TTT-TACAC-CCT-G-CG-AG-G-GCA-TCAGC-T--A-ACACC-CCCAACTC-A-AC-A--AC--ATG-CCT-CC-C-C--TCCCTCCAGT-CG--TT--GCT-AAAATT-G-TAGT-TC-GG-G--T-GCACAGTGT-CGTCTGTATCTGAGA-CTCGA-TA-------------------------GCA----TCG-AGCATAAACAT-G----ATCGT
gi|20 : catcgtatctaaaatattattacacacaattacacataactctgaatgctaactgaatcataatttaaaatgatttttgataataaattttgacaacagatatgctgggaggcaattaaataacaatgagctgccctcctatctctttgtagtacatgtaccttgcacatgtttagagctcctattttcttattgttaataacttgtgaatatatcaataattttggaaggggtggggcatttttgataaatgtacataaattataaaagaggggcagcttaaagatttaggcaggtgacttagactactattttataataatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggTTAT-T-AT-AGAT-ATT---AAAAATAGCAA--TTCGTTTCTGG-TATA-TTTGTCATATTC------TATAT-A-TTATAGCCAATA---ATAT-TTA--T-----AGCTCATTA--AT---ATATTT-ATTGCAA-GACTTC-GCAG---AAT-TGTTGG-GGAT---A-TT-----ACGGACATT--AGTAA--GATTC-------------CGTACTCG-AATTACGGCTTTTTTCCGTCATGAC-TTGTCAAC--GTCTTtgtaa
gi|23 : ttaaA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AA-CA-------CAAAAAG--C-AA-TC-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TC
gi|24 : T-C-GCAG---AGT-TGTAGG-GG-T---A-TT-----ACTGATATT--AGTAA--GAGTT-----------
gi|3 : aaGAGCTATAACT-CTAAAAAAAACAGATTGA-AGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CC-AAAAA--T--------------CC-A--CATT-ACTA-----GCA-A-T--AGCATA-TGTTAGTT-G--GAAA----A-TAT-C-ATTTAA------CCAAA-TG-TG--A-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGACTTAA--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG---AT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--CCTTCT-T-T--CT--AA-CA-------C-AAAAG--T-AA-TT-G--TA--C---------AT--TTTT-A-T------TA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AACA-C--CTTAA---T-A-ATCGC---AGA--CA---ACTCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTCAGCT-CAAA--TCAGGTGTCAT--GCGA--GGA--TGCT---C-ATGT-GAGGCAA-TTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACA-T-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-G-AATT-G-CAGT-TT-GG-G--TGGCACAGTGGCC-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGT-AACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTT-GAATCA-CGGCAT-G-TCG--TAATA-TTTCACTTTATAT-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTT-G-CAT--TTTGTCA-A--C----AATAAAT-A-TT-AAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT--TTTGAA-GACT-C-GCAG---AATCTGTTGG-GGAT---ACTT-----AC-GACATT--AGTCA--GA-TT-----------CACGTA-TCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTTacttccttttgcacatacc
gi|4 : TATAACTTCTAAATAAAACAGATTGAGAGCTT-CCAA-TTT---CAAA-CA-TG-T-GCAGACCCC----CA-AAAAA--T--------------CC-A--CATTAAC-A-----GCA-A--A-AGCATA-TGTTAGTT-G--G-AA----A-TAT-C-ATTTAA------CCAAA-TG-TGGAA-A--CACTG--TTC--ACA-TA--GG-AAT-T--G----TTTTCT-GTT--G-TGATT--A--CAG----GA-C----TAG-TGAA-G--ATTTC--TTAAA-CCGG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GC--GCAT-GT--CCA-TA-------CTA-TT-TG-A--C----C-GCG-TATCAGT--C--TCTT-T-C-T--CTA-AA-CA-------C-AAAAG--T--A-TT-G--AT--C---------CA--TTTT-A-T-------A--T--ATAA---T-TTC-AA-CT--TTC-TTCAA-T-GAAT--TT-T-----TC---AA-A-C--CTTAA---TGA-ATCGC---AGA--CA---A-TCCGAA-GCTTTCGCG-TCGTGT--AT--G-C-GC-AAGG---CTCAGCCAC-AA--TCAGG---CAT---CGA--GGA--TGCT---CGATGT-AGGGCAA-TTC-GC-A--T-----T----CTT-TACAC-GCA-G-CG-AG-A-GCATTCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGT-CT-TC-T-C--T-CCTCCA-G-CG--TT--GCT-GAAATT-G-CAG--TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGACTGTTAG--T-------A-------CC-GCAA-CCTCG-AGTGTAAAC-T-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATT
gi|6 : gatctgccgattatcgaattaattttgctagggtgtgggggcattttttttgcactagctgttattttgtacactgtacaaaagagcggaacaacttgaggatatgaaacatgttacttactactttattaaagtaatcaaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttccttcagagagacccaTAACT-CTAATTAAAACAGATTGA--------------T--AC-------------------CC----CA-AAAAT--T--------------CCCA--CATT-AC-A-----GCA-A-TA-AGTGTA-TGTTAGTT-G--GAA-------TAT-T-ATTTAA------CCAAA-TT-GG--C-AT-CACTCATTTCA-AC--TA--GGGAAT-T--T----TT---T-GTT--GTTGAT---A--CAG----GA-T----TAG-TGAAAG-CATTCT--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATG--CTTA-T-GCG-GCAT-GT-CC-A-TA-------CAT-TT-TG-AGGC----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AAACAA------CAAAAAG--C-AA-TC-GCATA--C---------TT--TTTTTA-TTTGGGGGAATT-AA-GA---TATTC-AA-CT--TC-ATTCAA-T-GAA---TT-T-----TC---AA-AAC--CTTAA---T-A-CTCGC---AAA--CA---A-TC--AA-A--TTC--------------------------------C-GC----GG--TC--GTG--A---GCGA--GGA--TGCT---C-ATGTAGGGGCAA-C-C-GC-ACTT-----T----TCT-TATAC-GCACG-CGCAGCA-GCA-TCTGC-C--AGACATT-CCCAACTC-C-AC-A--A---ATGTCGT--C-T-C--TCC-TCCAGA-CG--TTT-GCT-GAAATT-G-TTAT-TG-GGTG--T-GCACAGTGG-C-------TCCGAAA-CAT-A-TAC--A--TTCACAGCA-------CC-GCA---CTCG-AGTG-AAACAT-G-C-TGTCGTCA--TT-C-TC-GTC-ACGGAA-TGATTGAAAAACA-CGG-AT-GTTCT--TAATATTTTCACCATAT-TATTTAAATAAAA---AAAAATAGCAA--T-CGTCTTTGGTTATA-TTTGCCA-A--CAAGAAATAAAC-ATTT-TAG-CCATATTCTAATCTTA---TGTTTAGCTCC--A--AT---AT-TTTAATTTGAA-AACT-A-GCAG---AAT-TGTTGG-GGAT---T-GA-----AC-GACATTGCAGTAA--GA-TT-----------CACGTATTCG-AATTACG---TTTTTTCGTCATGA--
gi|7 : agcTAACT-CTAATAAAA-CAGATTGAAAGC-T-TC---------CGAA-CA-TG-T-GCGGACTCC----CA-AGAAAACT--------------TC-A--AAAT-AC-A-----ACA-A-TA-AGTGTA-AGTTAGTT-G--GAAA------TAT-T-ATATAA------CCAAA-TG-TG--C-A--CACTG--CTCA-ACATTA--GG-AAT-T--G----TT---T--TG--GTTGATT--A--CAG----GA-------AGTTAAA-T-CATTTC--TTCAA-CCCG--A-GTT-A-TC-T-C-T-CATAGCTTTA-T-GCG-GCAT-GT---CATTA-------CA--TT-TG-A-------T-GCG-GATCAGT--CGTTCTT-T-T-T--CT--AA-CG-------TAGCAAG--C-AA-TG-T--TA--A-------------TATT-A-T------GA--TAAATCA---T-TTA-AA-CA--T-CATCAAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA-----A----GC---AGA--CA---A-TCCAAA-G--TT------------------------AA-G---TTC-----T-GA--GCA--TACCAT--GCCA--GAG-----------ATGTAGGGGCAA-CTC-GC-A--T-----T----TCA-TACAC-GCA-G-CG-TG-A-GCA-TCAGC-C--A-ACATT-CCCAAATC-C-AC-A--AC--ATGT-CT-TC-C-T--TCCCTCCAGG-CG--TA--GCT-GAAATT-G-TAGT-TT-AA-G--T-GCACAGTGG-C-------TCCGAAG-CATGA-TGT--AG-C-------A-------CC-GCAA-CCTCG-AGTGCAAACACGG-CATGTCGTAA--TA-T-T---TC-AC--------TT-----------------------TATTA-TTTCAA---AT-----TAAA--AAA------AATTGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-ATTT-TAGCCCATC---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TGT-ATTTGAA-GACT-C-GCAGAATAAT-TGCTGG-GGGT---A-TT-----AC-GACATT--AGTAA--GAGTT-----------
gi|8 : agcAGAGC-TTCCAA-TTT--ACAAAACAGTG-TAGCAGACTCCGCGCCA-AAAAAA-T--------------CC-ATCCATT-AA-GAAG--GCA-A-TAGAGTGCAATGTTGGTTTG--GAGA----AGTAT-T-ATTAAT------CCAAA-TGCTG--C-AAGCACTG--TTCA-ACA-TACAGC-GATGT--T----TT---T-GTT--GTTGATT--AATCAG----GA------TAG-TGAA-G-CATTTCCTT--AA-CCCG--ATGTTGA-TC-TTCTT-CAT---CTTA-T-GCG-GCATTGT-CCAA--A-------CAT-CTATG-A--C----C-GCG-TACAAGT--C--T--TCT-T-T--CCTAAA-CA-------CAAAAAAGCC-AA-TT-G--TAGTC---------TTG-TTTT-A-T------CA----AATAAATTT-TTCGAA-CT--TGCATTCAA-TTGAAGCTTTGT-----TCCGAAA-G-CGGCTTAACATT-A-ATCGC---AGAAGCAG--A-TCCTAATG--TTCGCGGTCGTG---ATCTGCCAGC-AA-GAACTTC-GCT-C-GAGATAAG----CAT--GCGAAGGGA--TGCT---C-ATGTAGGGGCAA-CTCCGC-A--T-----TGTGCTTT-CACAC-GC--G-CG-AG-A-GCA-TCAGCTC--A-ACATTTCCCAACTCGC-AC-AGAACTAGTGTTCTCTCGT-C--ACCTCCCAGG-CG--TCTGGCT-GAAATTTG-TAGT-TTTGG-G--TTGCACATTTG-C-------TCCGAAG-CATGA-TGT--ACGT-------A-------CCTGCAATCCTCG-AGTGTAAACAT-GCC-TGTCGTCAGTTT-C-TTAGTC-ACGGGA-TGACTT-GAAACG-C-GCAT-G-TCG--TAAacttcccttttcatgtatc
gi|9 : tgaTTGAGAGC-T-CCAA-CTTTAACAAA-CA-TGCT-GCAGACTCC----CCCAAAAA--T--------------CC-A--CATTTAC-A-----GCA-A-TA-AGTGCA-TGTT-GTT-G--GAAA------TAT-TCATTTAA------CCAAA-TG-TG--CCA--CACTG--TTCA-ACA-TA--GC-AAT-T--GGTTCTT---T-GTTCTGCTTATT--A--CAG----GAAC----TAG-TGAA-G-CAT--C--T--AAACCCG--A-GTT-A-TC-T-CTTACATA--CTTA-TTGCG--CAT-GA-TCCA--A-------AAT-TT-GG-A--CG---C-GCGGTATCAGT--C--TTTCTT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TTGG--TA--CCATGTTTCTTT--TTTC-A-T----------T-AATAAT--T-TTC-AA-CT--TCCATTCAAGT-GAATT-TT-T-----TC---AA-A-C--CTTAA---T-AGATCGC---AGA--CA---A-TCCAAA-G--TTCGCGTTCGTG---AT--GCC-GCGAA-A---CTA-GCT-CAGA--TCA---GTCATTAGC-A--GGA--TGCT---C-ATGA-GGGGGAA-CTC-GT-A--T-----T----TGT-T-CACGGCT-G-CGAAG-AGGCA-TCAGC-C--AGACATT-CCCAACTC-C-ACAA--AC--ATGT-CT-TC-T-CGTTCCCTCCAGGCCG--TT--GCT-G-AATT-GATAGTGGT-GG-GCAT-GCACA-TTG-C-------TCCGAAACCAT-A-TGT--A--T-------AGGTTTACCC-GCAA-CCTCGAAGTGTAAACAT-G-C-TGC--TCA--TTACATT-GTCAACGGAA-TGATTG-AAAACACCGGCATGG-TCGCTCAATC-TTTT-TTTTAT-T-Tat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAATACATGTAAACTAGCAGTATGAACTGCATTAGTAGTACTATGATACACAATTTGTTTTGGGTAAATATAGTACTTAATATTTTTGGGTTAATCCAATACAGTTATCAATTCCTGAACTGTCGATGTCACCGACAACTCGAATCAGTTGTTGTTTTACATGATATAATAATACCTATATGATCGAATCAGGAGTATCTTTTCAATATTGTAATTTGTGTCTTCGTACACATTCCGGGCAGGAAGAAAATTGTTTCGTGGTTTTCGTTCGACAGCAGCAAATTTAGTATCAAGCCCACTCATCCCAATAATTATTGATAATTTTCGGAAAAATTATATATATCAGTAATTAACTTTGGTCCGGCTCCCATACTCTGCGTGTCATTTTTCAGCTGGCACCATCTATTACATGCGACAATGTCACAGGAATTGATGGCATCGTACCTAAAAAAGATACTACACATAAATTACATGTAAAACTACTGAGATGGCTAAACTGAATCATAGTTATTTTCTTTTTTCTTTCATATCATCACAACGTCTACAGTATGATGCGAAAAAAATTTTCAGCACTAAGTTAGTGATTTATCATAATATATATCATAATAATATTATGAATATTGGACATTGGACACTGGCAACATATTGCTGGGATGAAATCAATTAAACAATTGAGCCCCCCTCCCCCCCCCCCCCCTTCCCCTGGCCCCACCGTAGTAGTACATGATTACCTGCACGATGTTAATAACTCACTATTTTCTTATTGTTAGGTCTATTGGATCTTGCGTATTAATCATAATTTGTTAGGGGTTGGGGGGCATTTTTTTTTTTTTGCTACTAGCTGTTATATTTTACACTGTACAAAAGAGCGGACAACTTTGAGGATGAAACAGGTTACTACTACTTATTAAATAATCAAAT
Unaligned ( gi|5 ): AGGTATCAATTAACATGTATGAATTGTCGATGTCACCGACAACTGAATCAGTTTGTTTCATCTGTGATTCCACTAAAGTTACATGTATATAATACTGTACGATCAAGTCAGGAGTATTTTTTTCATATTGTCATTTTGTTGTAACATTCCGGGCAGAAAAAATTGTTTCGTGTTTTTCTCTGACAGCAGCAACTGTGTATTTGTCTTAGTATCAGCCCACTCATTCCCAATAATTATTGAATAATTCGAAAATATATATACCAATAATAACTTTGTGTCGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTACATGCACAAGTCACAGGAATTGATGCATCGCACCTTTAAAAAAATAGCTACACATAATTACAGGTAACTCCTGAAATGCTAACTGAATCATATTTATTTCTTTTTTTCTTTCTATATCATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAAT
Unaligned ( gi|10 ): ATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAATAATAACTCTGTGTCGGATCCACCATTACTCTGCTTTGTCCATTTTCCAGTTGGCACATTATTACATCGACAAGTCAAGGAATTATTTGATGGCATCGACTTTAAAAAAATACTAACACATAATTACATGTTAATTGAATGCTAACTGATTCATATTTTAATTTTCTTTTTTCTTCTTTATATCAGTCTACAATATGAATGCAAAAAATGTTCAGCACCTAGTTTGTGATTATTCAGTGCTAATTTATATACTATTATAAATCATGAAATGGATGAAACATGAACACTAACTGCTGGGGTGAAAAATTTATAACAATGAGCCCCCCCCTACCTAGTATGTAGTCTGTCCCGTGCACATGTTTTATAACTCATATTTTCTTATTGTTAGGTAATATTGGATCTTGTGATTATCATAATTTTGCCTAGGTCAGAGGGTGGGGGCATTTTTTTTTTTGCTAGCTGTTATATTTTACAGACTGTACAAAAGAGCAGACAACTTGGAGGATTTAAAACAGGTTACTACTTTATTAACTATCAAAT
Unaligned ( gi|13 ): TGAATAAGAAAACCTGCAGGTATGACTGTCAACAGTAGTCACTATTCGATACCACAAATTTAGGGGTAATTTTATAGTCACTTACTAGTATTTTGGGTTAATCAATTACAGGTATCAATTCTGAATGTTGAGTGCACCGACAATGAATCCAGTTTGTTCATTTCTGTGATCCAGCTATATAGTACATGATATGAATAATACTGTATGATCAAGTCAGGAGTATTTTTTCATACCAATTGTCAATTTGTTGTAACATTTCGGGCAGAAAAATTTGTTTCATGTTTTTTCTGACAGCAGCAAATGTGTATGTTGTCTTAGTATCAGCCCACTCATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAGTAATTAACTTTGTGTCGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTCATGCGACAAGTCACAGGAATTAAATTATTGTCAGATGCATCGTACCTTAAAAAAATACTACACA
Unaligned ( gi|14 ): ATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
Unaligned ( gi|17 ): CCATAACAATGACCCCCCCCCTTCCTAGTAGTACATGCACCGTTCACATGTTTAAACTGATCTACATGTAATTTTCTAATTGTTAAAATAATAATGGATTTTCTGCTTATCAATATTTTTGATAGGGGTGGGGGTATTTTTTGCTAGCTAAGATTATATTTTACACTGTACAAAAGAGAGCGAACAACTTGAGGATATGGACAATTGACTACTGTAATTAAATTATCAAAT
Unaligned ( gi|21 ): CATCCCAATAATTTATTGATAATTCGAAAAATATATATACCATGTAGTCAACTTTGTGTTGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTACATGCGACAAGTCACAGGAATTATTGATGCATCATACCAAAAAAAAAAAAAAAAATACTACACATGATTACATGTAACTCTGAATGCTA
Unaligned ( gi|22 ): TATAGGTAACTCCCTAAATATATATATATACCTGTAGCTAACTTTGTGTTGGCATCCCATATTCTTCTGTGTCGTTTTCCAGTTGGAACATTGTTAACAAATTCGCAGGTAGTATTCATGCATCGTATCTAAAATATTATTACACACAATTACACATAACTCTGAATGCTAACTGAATCATAAT
Alignments
lowQualScore : 1 111111 1111 333333333333333333 2222222 222222 111111 1111111 11 1111111 11 111 222222 11 111 1111111 1111111 22222222 1111111 2222222222222 222222222222 111 111 11111 1111111 111 88888888888888888888888888888888888888888888888888888 111 11111 1 1111111111 11 1 1111111 444444444444444444444 1 11 1111 1111 2222222 1 111 11 11111 111 111 11111 11111 1 1 2222222222222 222 11 1 222
lowQualScore : 6 1 6 5 000000 777 2 5 5 5 5 0000 5 000000000000000000 4 66 8 1111111 4 4 4 4 8 1 4 66 333333 4 4 222222 4 4 3333333 1 66 4 4 00 4 4 7777777 777 55 22 3 222 66 9999 999999 4 4 4 2 66 88 4 66 4 555 4 4 4 111 4 4 77 4 99 0 44 3333333 4 4 4 3333333 4 4 11111111 4 4 8 99 99 4 7777777 0 55 4 4 4 55 55 1111111111111 4 4 111111111111 111 4 4 4 55 88 4 8 888 4 11111 777 4 4 66 0000000 777 66 222 4 4 66 22222222222222222222222222222222222222222222222222222 66 1 66 000 00000 3 4 1 4 4 66 1111111111 3 4 4 66 4 8 4 4 4 4 66 8 5 4 4 4 4 66 66 88 4 444 66 4 66 00 4 1 4 4 5 5 5 66 0 5 6666666 5 2 5 333333333333333333333 5 88 5 0 4 4 4 66 0 5 5 5 5 00 5 3 0 5 5 77 6 444 777 1 6 3333 3333 1 6 6 6 5555555 6 3 6 2 111 6 55 33333 111 6 6 6 5 5 000 5 5 7 00000 44444 1 77 77 1 7777777777777 0 8 8 111 99 0 777
lowQualScore : . . . . ...... ... . . . . . .... . .................. . .. . ....... . . . . . . . .. ...... . . ...... . . ....... . .. . . .. . . ....... ... .. .. . ... .. .... ...... . . . . .. .. . .. . ... . . . ... . . .. . .. . .. ....... . . . ....... . . ........ . . . .. .. . ....... . .. . . . .. .. ............. . . ............ ... . . . .. .. . . ... . ..... ... . . .. ....... ... .. ... . . .. ..................................................... .. . .. ... ..... . . . . . .. .......... . . . .. . . . . . . .. . . . . . . .. .. .. . ... .. . .. .. . . . . . . . .. . . ....... . . . ..................... . .. . . . . . .. . . . . . .. . . . . . .. . ... ... . . .... .... . . . . ....... . . . . ... . .. ..... ... . . . . . ... . . . ..... ..... . .. .. . ............. . . . ... .. . ...
lowQualScore : 7 3 5 0 555555 000 0 0 0 0 0 6666 0 999999999999999999 4 11 9 4444444 4 4 4 4 9 0 4 11 999999 4 4 888888 4 4 8888888 9 11 4 4 66 4 4 3333333 888 66 22 6 444 11 4444 666666 4 4 4 0 11 33 4 11 4 333 4 4 0 666 4 4 33 4 11 1 88 0000000 0 0 0 0000000 0 0 66666666 1 0 0 55 55 0 0000000 8 55 0 0 0 55 55 5555555555555 0 0 888888888888 000 0 0 0 55 00 4 9 333 4 11111 888 4 4 11 2222222 888 11 222 4 4 11 55555555555555555555555555555555555555555555555555555 11 1 11 999 66666 3 4 9 4 4 11 6666666666 7 4 4 77 4 9 4 4 4 4 11 9 2 4 4 4 4 11 11 66 4 999 11 4 11 66 4 9 4 4 0 0 0 99 0 0 2222222 0 5 0 999999999999999999999 0 22 0 4 4 4 4 99 0 0 0 0 0 00 7 0 7 7 7 99 7 777 111 7 7 3333 5555 0 7 7 7 7777777 7 3 7 5 777 7 88 77777 777 7 7 7 7 7 000 7 7 1 44444 33333 4 99 99 9 7777777777777 8 2 0 666 00 0 555
consensus : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
Reference ( family-3203 ) : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
gi|11 : --T--------------CC-A--CATT-AT-AATGGTGCA-AATA-TTGGTA-TGCTTGTT-G--AAAAGATGA-TGTAT-ATATAAACCAATCCAAA-TG-TGTGC-A--CACTG--GCTACACA-TAA-GG-AAT-CTAG----TT---TTGTTTGATTGATTT-A--CAGTCTAGAGCATAATAG-TGAA-GGCATATA--T--TA-CCCG--A-GTT-AATCAT-CTT-CATAA-CATAAT-G-G-GCAT-GTATCCA-TAAACACAACATATT-TGCA--C----AAGCG-TATCAATAGC--TCTTCT-T-TTCCT--AA-CAACATGATCACAAAG--CTAACTT-G--TA--C---------TTGATTTT-AAT------GA----AATAA---T-TTT-AAACTATTCAATTCAA-TTGAA---TT-TGATTACC---AA-A-C---TTAA---T-ATATCACGCAAGA--CAGATA-CCCAAA-G--TTCGCC-TCGTGAGCAT--ATC-GC--A-G---CTC-GC-----ATCAG----G-CAT--GCGA--GGAACTGCTATGC-AGGT-AGGGCAAGCTC-GCAA--TCTTAAT----TCTATA-AC-GCA-GACG-A--A-GCA-TCAGC-CTAA-ACA-T-CCCAACTC-CAAC-A--AC--ATGTCTT-CA-TAC--TCCCTCC-GG-CGTTTT--GCTAAAAATT-G-
gi|12 : TAACT-CTAATAAAA---GATTGAGAGC-T-TCAAATTT--ACCAA-CA-TG-T-GTAGACTCC----CA-AAAA---T--------------CC-A--CATT--C-A-----GCA-A-TA-AGTGTAATGT-AGTT-G--GAAA------TAT-T-ATTTAA------CCAAAATC-TG--C-A--C--TG--TTCA-ACA-TA--GG-GAT-T--GT---TT---T-GTT--G-TGATT--A--CAG----GA------TAG-TGAA-G-CATTTC--TTAAA-CCCGTTA-GTT---TC-T-ATT-acaatcaaaaagttataaacaaagatgcaacagtggcttaagctga
gi|15 : gatcttgtgattatcataattttgcctaggtcagagggtgggggcatttttttttttgctagctgttatattttacagactgtacaaaagagcagacaacttggaggatttaaaacaggttactactttattaactatcaaattggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgtagcT-G-C-TGTCGTCA--TTGT-TT-ATC-GCGGAAATAAGTG-AAAACA-CGGCAT-G-TCG--TAATC-TTTTTTTTTTT-T-TTCAAAT-AAA---AGAAAGAGCAA--T-CGTCTTTAG-TAAA-TTTGTCA-A--TAAA-AATAAAC-A-TT-TAGCCCATA---TATT-TTATTTTTTTTATCTTA--T--AT---AT-TTC-ATTTGAA-GACT-C-AGAT---AGT-CGCTGG-GG-T---A-TT-----AC-GACATT--TGCAA--GATTTACTTCCGTTTCCACG-AGTCA-ATTTACG--TTAAAATCCTCATGA--TGCT-AA---GTgtgtagccgaaaatataataacaattgatatctgttgttccctacttaacaagtggcagacaa
gi|16 : GTG---AT--GCC-GC-A----------GCT-C-----AGG-----CAT--GCGA--GAG-----------ATGT-AGGGCAA-TTC-GC-A--T-----T----T-T-TATAC-GCA-G-CA-AG-A-GCA-TCAGC-C--A-ACACT-TCAAACTC-C-AC-A--AC--ATGTC-T-TC-C-C--TCCCTCCAGG-CG--TT--GCC-GAAATT-G-TAGT-TT-AG-G--T-GCACAGTGG-T-------TCCGAAA-CATG----T--AG-C-------A-------CC-GCAA-CCTCA-AGTGTTAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ATGGAA-TGATTG-AAAACA-CAGCAT-G-TCG--TAATA-TTTCACTTTAT-T-act
gi|18 : TTAT-T-TTTAGAT-AAATCAGGAAATAGCAAAATGCGTCTT-GG-TATACTTTGTCA-A--TCAAGAATAAACTA-TT-TAAGCCA-A---TAAT-TTAT-TTTTTTAGCTCA--ACCATGGAAT-TTT-ATTTGAAGGACT-CGGCAG---AAT-TGTTGGCGGATGTGA-TTATTAAAC-GACATT--AGTAATGGATTT-----------CCCATACTCGTAATTACG---TTTTTTCGTCATGAATTTGT-AAATTGTCTTaa
gi|19 : ttta-CATT--TTTA-T-GCG-GCAT-G--CCCA-TA-------TAT-TT-GG-A--C----C-GTG-TATCAGTATCAGTCTTCT-T-TT-CT--AA-CA-------CAAAAAG--C-AA-TT-G--CA--C---------TT--TTTT-A-T------GA--T-AATCA---T-TCC-AA-CT--T-CATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-G-ATGGC---AGA--CA---A-CCCAAA-G--T
gi|2 : gttcaaatcataaacatctgaaattatcttttaatctttaaaaaaaaataatttcagGAGCTA--ACT-CTAATAAA--CTGATTGAAAGC-T-T--G-TTT--ACAAA-CA-TA-T-GTAGATTCA----AA-AAAAA--AAAAAAAAAAAAAAACC-A--CAAT-AC-------GCATA-TA-A------TGTCAGTT-ACTGGAA----A-TGT-T-ATTTAA------CCAAA-TG-TG--C-A--C--TG--TTCA-GCA-TA--GG-AAT-T--A----TC---T--TT--GTTGAT----------------------AA-TGAA-G-C---------------------GTT-A-TC-T-CGT-CATA--TTTA-T-GCCCACAT--T-CCTC-TC-------CAT-TT-TG-A--CAGTCT-GTG-TATCAGT----------TAT-T--CT--AA-CA-------CAAAAAG--C-TA-TT-G--TA--C---------TT--TTTT-A-T------AA--T-AATCA---T-TAG-AA-CT--TC-ATTCAA-T-AAA---TT-T-----TC---AA-A-C--CTTTA---T-A-ATGGC---AGA--CA---A-TCCAAA-G--TT-G-----GTG---AT--GTC-GC-AG-G---C---------------GT--G-T----------GAA--AGCT---G-A-AT-GGGTAAA-C-C-GC-A--T-----T----TTT-TACAC-CCT-G-CG-AG-G-GCA-TCAGC-T--A-ACACC-CCCAACTC-A-AC-A--AC--ATG-CCT-CC-C-C--TCCCTCCAGT-CG--TT--GCT-AAAATT-G-TAGT-TC-GG-G--T-GCACAGTGT-CGTCTGTATCTGAGA-CTCGA-TA-------------------------GCA----TCG-AGCATAAACAT-G----ATCGT
gi|20 : catcgtatctaaaatattattacacacaattacacataactctgaatgctaactgaatcataatttaaaatgatttttgataataaattttgacaacagatatgctgggaggcaattaaataacaatgagctgccctcctatctctttgtagtacatgtaccttgcacatgtttagagctcctattttcttattgttaataacttgtgaatatatcaataattttggaaggggtggggcatttttgataaatgtacataaattataaaagaggggcagcttaaagatttaggcaggtgacttagactactattttataataatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggTTAT-T-AT-AGAT-ATT---AAAAATAGCAA--TTCGTTTCTGG-TATA-TTTGTCATATTC------TATAT-A-TTATAGCCAATA---ATAT-TTA--T-----AGCTCATTA--AT---ATATTT-ATTGCAA-GACTTC-GCAG---AAT-TGTTGG-GGAT---A-TT-----ACGGACATT--AGTAA--GATTC-------------CGTACTCG-AATTACGGCTTTTTTCCGTCATGAC-TTGTCAAC--GTCTTtgtaa
gi|23 : ttaaA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AA-CA-------CAAAAAG--C-AA-TC-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TC
gi|24 : T-C-GCAG---AGT-TGTAGG-GG-T---A-TT-----ACTGATATT--AGTAA--GAGTT-----------
gi|3 : aaGAGCTATAACT-CTAAAAAAAACAGATTGA-AGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CC-AAAAA--T--------------CC-A--CATT-ACTA-----GCA-A-T--AGCATA-TGTTAGTT-G--GAAA----A-TAT-C-ATTTAA------CCAAA-TG-TG--A-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGACTTAA--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG---AT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--CCTTCT-T-T--CT--AA-CA-------C-AAAAG--T-AA-TT-G--TA--C---------AT--TTTT-A-T------TA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AACA-C--CTTAA---T-A-ATCGC---AGA--CA---ACTCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTCAGCT-CAAATCAGGT--GTCAT--GCGA--GGA--TGCT---C-ATGT-GAGGCAA-TTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACA-T-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-G-AATT-G-CAGT-TT-GG-G--TGGCACAGTGGCC-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGT-AACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTT-GAATCA-CGGCAT-G-TCG--TAATA-TTTCACTTTATAT-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTT-G-CAT--TTTGTCA-A--C----AATAAAT-A-TT-AAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT--TTTGAA-GACT-C-GCAG---AATCTGTTGG-GGAT---ACTT-----AC-GACATT--AGTCA--GA-TT-----------CACGTA-TCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTTacttccttttgcacatacc
gi|4 : TATAACTTCTAAATAAAACAGATTGAGAGCTT-CCAA-TTT---CAAA-CA-TG-T-GCAGACCCC----CA-AAAAA--T--------------CC-A--CATTAAC-A-----GCA-A--A-AGCATA-TGTTAGTT-G--G-AA----A-TAT-C-ATTTAA------CCAAA-TG-TGGAA-A--CACTG--TTC--ACA-TA--GG-AAT-T--G----TTTTCT-GTT--G-TGATT--A--CAG----GA-C----TAG-TGAA-G--ATTTC--TTAAA-CCGG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GC--GCAT-GT--CCA-TA-------CTA-TT-TG-A--C----C-GCG-TATCAGT--C--TCTT-T-C-T--CTA-AA-CA-------C-AAAAG--T--A-TT-G--AT--C---------CA--TTTT-A-T-------A--T--ATAA---T-TTC-AA-CT--TTC-TTCAA-T-GAAT--TT-T-----TC---AA-A-C--CTTAA---TGA-ATCGC---AGA--CA---A-TCCGAA-GCTTTCGCG-TCGTGT--AT--G-C-GC-AAGG---CTCAGCCAC-AATCAG----G-CAT---CGA--GGA--TGCT---CGATGT-AGGGCAA-TTC-GC-A--T-----T----CTT-TACAC-GCA-G-CG-AG-A-GCATTCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGT-CT-TC-T-C--T-CCTCCA-G-CG--TT--GCT-GAAATT-G-CAG--TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGACTGTTAG--T-------A-------CC-GCAA-CCTCG-AGTGTAAAC-T-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATT
gi|6 : gatctgccgattatcgaattaattttgctagggtgtgggggcattttttttgcactagctgttattttgtacactgtacaaaagagcggaacaacttgaggatatgaaacatgttacttactactttattaaagtaatcaaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttccttcagagagacccaTAACT-CTAATTAAAACAGATTGA--------------T--AC-------------------CC----CA-AAAAT--T--------------CCCA--CATT-AC-A-----GCA-A-TA-AGTGTA-TGTTAGTT-G--GAA-------TAT-T-ATTTAA------CCAAA-TT-GG--C-AT-CACTCATTTCA-AC--TA--GGGAAT-T--T----TT---T-GTT--GTTGAT---A--CAG----GA-T----TAG-TGAAAG-CATTCT--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATG--CTTA-T-GCG-GCAT-GT-CC-A-TA-------CAT-TT-TG-AGGC----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AAACAA------CAAAAAG--C-AA-TC-GCATA--C---------TT--TTTTTA-TTTGGGGGAATT-AA-GA---TATTC-AA-CT--TC-ATTCAA-T-GAA---TT-T-----TC---AA-AAC--CTTAA---T-A-CTCGC---AAA--CA---A-TC--AA-A--TTC--------------------------------C-GC----GGTC--GT--G--A---GCGA--GGA--TGCT---C-ATGTAGGGGCAA-C-C-GC-ACTT-----T----TCT-TATAC-GCACG-CGCAGCA-GCA-TCTGC-C--AGACATT-CCCAACTC-C-AC-A--A---ATGTCGT--C-T-C--TCC-TCCAGA-CG--TTT-GCT-GAAATT-G-TTAT-TG-GGTG--T-GCACAGTGG-C-------TCCGAAA-CAT-A-TAC--A--TTCACAGCA-------CC-GCA---CTCG-AGTG-AAACAT-G-C-TGTCGTCA--TT-C-TC-GTC-ACGGAA-TGATTGAAAAACA-CGG-AT-GTTCT--TAATATTTTCACCATAT-TATTTAAATAAAA---AAAAATAGCAA--T-CGTCTTTGGTTATA-TTTGCCA-A--CAAGAAATAAAC-ATTT-TAG-CCATATTCTAATCTTA---TGTTTAGCTCC--A--AT---AT-TTTAATTTGAA-AACT-A-GCAG---AAT-TGTTGG-GGAT---T-GA-----AC-GACATTGCAGTAA--GA-TT-----------CACGTATTCG-AATTACG---TTTTTTCGTCATGA--
gi|7 : agcTAACT-CTAATAAAA-CAGATTGAAAGC-T-TC---------CGAA-CA-TG-T-GCGGACTCC----CA-AGAAAACT--------------TC-A--AAAT-AC-A-----ACA-A-TA-AGTGTA-AGTTAGTT-G--GAAA------TAT-T-ATATAA------CCAAA-TG-TG--C-A--CACTG--CTCA-ACATTA--GG-AAT-T--G----TT---T--TG--GTTGATT--A--CAG----GA-------AGTTAAA-T-CATTTC--TTCAA-CCCG--A-GTT-A-TC-T-C-T-CATAGCTTTA-T-GCG-GCAT-GT---CATTA-------CA--TT-TG-A-------T-GCG-GATCAGT--CGTTCTT-T-T-T--CT--AA-CG-------TAGCAAG--C-AA-TG-T--TA--A-------------TATT-A-T------GA--TAAATCA---T-TTA-AA-CA--T-CATCAAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA-----A----GC---AGA--CA---A-TCCAAA-G--TT------------------------AA-G---TTC-----T-GAGCA--T--ACCAT--GCCA--GAG-----------ATGTAGGGGCAA-CTC-GC-A--T-----T----TCA-TACAC-GCA-G-CG-TG-A-GCA-TCAGC-C--A-ACATT-CCCAAATC-C-AC-A--AC--ATGT-CT-TC-C-T--TCCCTCCAGG-CG--TA--GCT-GAAATT-G-TAGT-TT-AA-G--T-GCACAGTGG-C-------TCCGAAG-CATGA-TGT--AG-C-------A-------CC-GCAA-CCTCG-AGTGCAAACACGG-CATGTCGTAA--TA-T-T---TC-AC--------TT-----------------------TATTA-TTTCAA---AT-----TAAA--AAA------AATTGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-ATTT-TAGCCCATC---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TGT-ATTTGAA-GACT-C-GCAGAATAAT-TGCTGG-GGGT---A-TT-----AC-GACATT--AGTAA--GAGTT-----------
gi|8 : agcAGAGC-TTCCAA-TTT--ACAAAACAGTG-TAGCAGACTCCGCGCCA-AAAAAA-T--------------CC-ATCCATT-AA-GAAG--GCA-A-TAGAGTGCAATGTTGGTTTG--GAGA----AGTAT-T-ATTAAT------CCAAA-TGCTG--C-AAGCACTG--TTCA-ACA-TACAGC-GATGT--T----TT---T-GTT--GTTGATT--AATCAG----GA------TAG-TGAA-G-CATTTCCTT--AA-CCCG--ATGTTGA-TC-TTCTT-CAT---CTTA-T-GCG-GCATTGT-CCAA--A-------CAT-CTATG-A--C----C-GCG-TACAAGT--C--T--TCT-T-T--CCTAAA-CA-------CAAAAAAGCC-AA-TT-G--TAGTC---------TTG-TTTT-A-T------CA----AATAAATTT-TTCGAA-CT--TGCATTCAA-TTGAAGCTTTGT-----TCCGAAA-G-CGGCTTAACATT-A-ATCGC---AGAAGCAG--A-TCCTAATG--TTCGCGGTCGTG---ATCTGCCAGC-AA-GAACTTC-GCT-C-GA---GATAAG-CAT--GCGAAGGGA--TGCT---C-ATGTAGGGGCAA-CTCCGC-A--T-----TGTGCTTT-CACAC-GC--G-CG-AG-A-GCA-TCAGCTC--A-ACATTTCCCAACTCGC-AC-AGAACTAGTGTTCTCTCGT-C--ACCTCCCAGG-CG--TCTGGCT-GAAATTTG-TAGT-TTTGG-G--TTGCACATTTG-C-------TCCGAAG-CATGA-TGT--ACGT-------A-------CCTGCAATCCTCG-AGTGTAAACAT-GCC-TGTCGTCAGTTT-C-TTAGTC-ACGGGA-TGACTT-GAAACG-C-GCAT-G-TCG--TAAacttcccttttcatgtatc
gi|9 : tgaTTGAGAGC-T-CCAA-CTTTAACAAA-CA-TGCT-GCAGACTCC----CCCAAAAA--T--------------CC-A--CATTTAC-A-----GCA-A-TA-AGTGCA-TGTT-GTT-G--GAAA------TAT-TCATTTAA------CCAAA-TG-TG--CCA--CACTG--TTCA-ACA-TA--GC-AAT-T--GGTTCTT---T-GTTCTGCTTATT--A--CAG----GAAC----TAG-TGAA-G-CAT--C--T--AAACCCG--A-GTT-A-TC-T-CTTACATA--CTTA-TTGCG--CAT-GA-TCCA--A-------AAT-TT-GG-A--CG---C-GCGGTATCAGT--C--TTTCTT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TTGG--TA--CCATGTTTCTTT--TTTC-A-T----------T-AATAAT--T-TTC-AA-CT--TCCATTCAAGT-GAATT-TT-T-----TC---AA-A-C--CTTAA---T-AGATCGC---AGA--CA---A-TCCAAA-G--TTCGCGTTCGTG---AT--GCC-GCGAA-A---CTA-GCT-CAGATCA-GT----CATTAGC-A--GGA--TGCT---C-ATGA-GGGGGAA-CTC-GT-A--T-----T----TGT-T-CACGGCT-G-CGAAG-AGGCA-TCAGC-C--AGACATT-CCCAACTC-C-ACAA--AC--ATGT-CT-TC-T-CGTTCCCTCCAGGCCG--TT--GCT-G-AATT-GATAGTGGT-GG-GCAT-GCACA-TTG-C-------TCCGAAACCAT-A-TGT--A--T-------AGGTTTACCC-GCAA-CCTCGAAGTGTAAACAT-G-C-TGC--TCA--TTACATT-GTCAACGGAA-TGATTG-AAAACACCGGCATGG-TCGCTCAATC-TTTT-TTTTAT-T-Tat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAATACATGTAAACTAGCAGTATGAACTGCATTAGTAGTACTATGATACACAATTTGTTTTGGGTAAATATAGTACTTAATATTTTTGGGTTAATCCAATACAGTTATCAATTCCTGAACTGTCGATGTCACCGACAACTCGAATCAGTTGTTGTTTTACATGATATAATAATACCTATATGATCGAATCAGGAGTATCTTTTCAATATTGTAATTTGTGTCTTCGTACACATTCCGGGCAGGAAGAAAATTGTTTCGTGGTTTTCGTTCGACAGCAGCAAATTTAGTATCAAGCCCACTCATCCCAATAATTATTGATAATTTTCGGAAAAATTATATATATCAGTAATTAACTTTGGTCCGGCTCCCATACTCTGCGTGTCATTTTTCAGCTGGCACCATCTATTACATGCGACAATGTCACAGGAATTGATGGCATCGTACCTAAAAAAGATACTACACATAAATTACATGTAAAACTACTGAGATGGCTAAACTGAATCATAGTTATTTTCTTTTTTCTTTCATATCATCACAACGTCTACAGTATGATGCGAAAAAAATTTTCAGCACTAAGTTAGTGATTTATCATAATATATATCATAATAATATTATGAATATTGGACATTGGACACTGGCAACATATTGCTGGGATGAAATCAATTAAACAATTGAGCCCCCCTCCCCCCCCCCCCCCTTCCCCTGGCCCCACCGTAGTAGTACATGATTACCTGCACGATGTTAATAACTCACTATTTTCTTATTGTTAGGTCTATTGGATCTTGCGTATTAATCATAATTTGTTAGGGGTTGGGGGGCATTTTTTTTTTTTTGCTACTAGCTGTTATATTTTACACTGTACAAAAGAGCGGACAACTTTGAGGATGAAACAGGTTACTACTACTTATTAAATAATCAAAT
Unaligned ( gi|5 ): AGGTATCAATTAACATGTATGAATTGTCGATGTCACCGACAACTGAATCAGTTTGTTTCATCTGTGATTCCACTAAAGTTACATGTATATAATACTGTACGATCAAGTCAGGAGTATTTTTTTCATATTGTCATTTTGTTGTAACATTCCGGGCAGAAAAAATTGTTTCGTGTTTTTCTCTGACAGCAGCAACTGTGTATTTGTCTTAGTATCAGCCCACTCATTCCCAATAATTATTGAATAATTCGAAAATATATATACCAATAATAACTTTGTGTCGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTACATGCACAAGTCACAGGAATTGATGCATCGCACCTTTAAAAAAATAGCTACACATAATTACAGGTAACTCCTGAAATGCTAACTGAATCATATTTATTTCTTTTTTTCTTTCTATATCATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAAT
Unaligned ( gi|10 ): ATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAATAATAACTCTGTGTCGGATCCACCATTACTCTGCTTTGTCCATTTTCCAGTTGGCACATTATTACATCGACAAGTCAAGGAATTATTTGATGGCATCGACTTTAAAAAAATACTAACACATAATTACATGTTAATTGAATGCTAACTGATTCATATTTTAATTTTCTTTTTTCTTCTTTATATCAGTCTACAATATGAATGCAAAAAATGTTCAGCACCTAGTTTGTGATTATTCAGTGCTAATTTATATACTATTATAAATCATGAAATGGATGAAACATGAACACTAACTGCTGGGGTGAAAAATTTATAACAATGAGCCCCCCCCTACCTAGTATGTAGTCTGTCCCGTGCACATGTTTTATAACTCATATTTTCTTATTGTTAGGTAATATTGGATCTTGTGATTATCATAATTTTGCCTAGGTCAGAGGGTGGGGGCATTTTTTTTTTTGCTAGCTGTTATATTTTACAGACTGTACAAAAGAGCAGACAACTTGGAGGATTTAAAACAGGTTACTACTTTATTAACTATCAAAT
Unaligned ( gi|13 ): TGAATAAGAAAACCTGCAGGTATGACTGTCAACAGTAGTCACTATTCGATACCACAAATTTAGGGGTAATTTTATAGTCACTTACTAGTATTTTGGGTTAATCAATTACAGGTATCAATTCTGAATGTTGAGTGCACCGACAATGAATCCAGTTTGTTCATTTCTGTGATCCAGCTATATAGTACATGATATGAATAATACTGTATGATCAAGTCAGGAGTATTTTTTCATACCAATTGTCAATTTGTTGTAACATTTCGGGCAGAAAAATTTGTTTCATGTTTTTTCTGACAGCAGCAAATGTGTATGTTGTCTTAGTATCAGCCCACTCATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAGTAATTAACTTTGTGTCGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTCATGCGACAAGTCACAGGAATTAAATTATTGTCAGATGCATCGTACCTTAAAAAAATACTACACA
Unaligned ( gi|14 ): ATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
Unaligned ( gi|17 ): CCATAACAATGACCCCCCCCCTTCCTAGTAGTACATGCACCGTTCACATGTTTAAACTGATCTACATGTAATTTTCTAATTGTTAAAATAATAATGGATTTTCTGCTTATCAATATTTTTGATAGGGGTGGGGGTATTTTTTGCTAGCTAAGATTATATTTTACACTGTACAAAAGAGAGCGAACAACTTGAGGATATGGACAATTGACTACTGTAATTAAATTATCAAAT
Unaligned ( gi|21 ): CATCCCAATAATTTATTGATAATTCGAAAAATATATATACCATGTAGTCAACTTTGTGTTGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTACATGCGACAAGTCACAGGAATTATTGATGCATCATACCAAAAAAAAAAAAAAAAATACTACACATGATTACATGTAACTCTGAATGCTA
Unaligned ( gi|22 ): TATAGGTAACTCCCTAAATATATATATATACCTGTAGCTAACTTTGTGTTGGCATCCCATATTCTTCTGTGTCGTTTTCCAGTTGGAACATTGTTAACAAATTCGCAGGTAGTATTCATGCATCGTATCTAAAATATTATTACACACAATTACACATAACTCTGAATGCTAACTGAATCATAAT
Alignments
lowQualScore : 1 111111 1111 333333333333333333 2222222 222222 111111 1111111 11 1111111 11 111 222222 11 111 1111111 1111111 22222222 1111111 2222222222222 222222222222 111 111 11111 1111111 111 88888888888888888888888888888888888888888888888888888 111 11111 1 1111111111 11 1 1111111 444444444444444444444 1 11 1111 1111 2222222 1 111 11 11111 111 111 11111 11111 1 1 2222222222222 222 11 1 222
lowQualScore : 6 1 6 5 000000 777 2 5 5 5 5 0000 5 000000000000000000 4 66 8 1111111 4 4 4 4 8 1 4 66 333333 4 4 222222 4 4 3333333 1 66 4 4 00 4 4 7777777 777 55 22 3 222 66 9999 999999 4 4 4 2 66 88 4 66 4 555 4 4 4 111 4 4 77 4 99 0 44 3333333 4 4 4 3333333 4 4 11111111 4 4 8 99 99 4 7777777 0 55 4 4 4 55 55 1111111111111 4 4 111111111111 111 4 4 4 55 88 4 8 888 4 11111 777 4 4 66 0000000 777 66 222 4 4 66 22222222222222222222222222222222222222222222222222222 66 1 66 000 00000 3 4 1 4 4 66 1111111111 3 4 4 66 4 8 4 4 4 4 66 8 5 4 4 4 4 66 66 88 4 444 66 4 66 00 4 1 4 4 5 5 5 66 0 5 6666666 5 2 5 333333333333333333333 5 88 5 0 4 4 4 66 0 5 5 5 5 00 5 3 0 5 5 77 6 444 777 1 6 3333 3333 1 6 6 6 5555555 6 3 6 2 111 6 55 33333 111 6 6 6 5 5 000 5 5 7 00000 44444 1 77 77 1 7777777777777 0 8 8 111 99 0 777
lowQualScore : . . . . ...... ... . . . . . .... . .................. . .. . ....... . . . . . . . .. ...... . . ...... . . ....... . .. . . .. . . ....... ... .. .. . ... .. .... ...... . . . . .. .. . .. . ... . . . ... . . .. . .. . .. ....... . . . ....... . . ........ . . . .. .. . ....... . .. . . . .. .. ............. . . ............ ... . . . .. .. . . ... . ..... ... . . .. ....... ... .. ... . . .. ..................................................... .. . .. ... ..... . . . . . .. .......... . . . .. . . . . . . .. . . . . . . .. .. .. . ... .. . .. .. . . . . . . . .. . . ....... . . . ..................... . .. . . . . . .. . . . . . .. . . . . . .. . ... ... . . .... .... . . . . ....... . . . . ... . .. ..... ... . . . . . ... . . . ..... ..... . .. .. . ............. . . . ... .. . ...
lowQualScore : 7 3 5 0 555555 000 0 0 0 0 0 6666 0 999999999999999999 4 11 9 4444444 4 4 4 4 9 0 4 11 999999 4 4 888888 4 4 8888888 9 11 4 4 66 4 4 3333333 888 66 22 6 444 11 4444 666666 4 4 4 0 11 33 4 11 4 333 4 4 0 666 4 4 33 4 11 1 88 0000000 0 0 0 0000000 0 0 66666666 1 0 0 55 55 0 0000000 8 55 0 0 0 55 55 5555555555555 0 0 888888888888 000 0 0 0 55 00 4 9 333 4 11111 888 4 4 11 2222222 888 11 222 4 4 11 55555555555555555555555555555555555555555555555555555 11 1 11 999 66666 3 4 9 4 4 11 6666666666 7 4 4 77 4 9 4 4 4 4 11 9 2 4 4 4 4 11 11 66 4 999 11 4 11 66 4 9 4 4 0 0 0 99 0 0 2222222 0 5 0 999999999999999999999 0 22 0 4 4 4 4 99 0 0 0 0 0 00 7 0 7 7 7 99 7 777 111 7 7 3333 5555 0 7 7 7 7777777 7 3 7 5 777 7 88 77777 777 7 7 7 7 7 000 7 7 1 44444 33333 4 99 99 9 7777777777777 8 2 0 666 00 0 555
consensus : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
Reference ( family-3203 ) : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
gi|11 : --T--------------CC-A--CATT-AT-AATGGTGCA-AATA-TTGGTA-TGCTTGTT-G--AAAAGATGA-TGTAT-ATATAAACCAATCCAAA-TG-TGTGC-A--CACTG--GCTACACA-TAA-GG-AAT-CTAG----TT---TTGTTTGATTGATTT-A--CAGTCTAGAGCATAATAG-TGAA-GGCATATA--T--TA-CCCG--A-GTT-AATCAT-CTT-CATAA-CATAAT-G-G-GCAT-GTATCCA-TAAACACAACATATT-TGCA--C----AAGCG-TATCAATAGC--TCTTCT-T-TTCCT--AA-CAACATGATCACAAAG--CTAACTT-G--TA--C---------TTGATTTT-AAT------GA----AATAA---T-TTT-AAACTATTCAATTCAA-TTGAA---TT-TGATTACC---AA-A-C---TTAA---T-ATATCACGCAAGA--CAGATA-CCCAAA-G--TTCGCC-TCGTGAGCAT--ATC-GC--A-G---CTC-GC-----ATCAG----G-CAT--GCGA--GGAACTGCTATGC-AGGT-AGGGCAAGCTC-GCAA--TCTTAAT----TCTATA-AC-GCA-GACG-A--A-GCA-TCAGC-CTAA-ACA-T-CCCAACTC-CAAC-A--AC--ATGTCTT-CA-TAC--TCCCTCC-GG-CGTTTT--GCTAAAAATT-G-
gi|12 : TAACT-CTAATAAAA---GATTGAGAGC-T-TCAAATTT--ACCAA-CA-TG-T-GTAGACTCC----CA-AAAA---T--------------CC-A--CATT--C-A-----GCA-A-TA-AGTGTAATGT-AGTT-G--GAAA------TAT-T-ATTTAA------CCAAAATC-TG--C-A--C--TG--TTCA-ACA-TA--GG-GAT-T--GT---TT---T-GTT--G-TGATT--A--CAG----GA------TAG-TGAA-G-CATTTC--TTAAA-CCCGTTA-GTT---TC-T-ATT-acaatcaaaaagttataaacaaagatgcaacagtggcttaagctga
gi|15 : gatcttgtgattatcataattttgcctaggtcagagggtgggggcatttttttttttgctagctgttatattttacagactgtacaaaagagcagacaacttggaggatttaaaacaggttactactttattaactatcaaattggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgtagcT-G-C-TGTCGTCA--TTGT-TT-ATC-GCGGAAATAAGTG-AAAACA-CGGCAT-G-TCG--TAATC-TTTTTTTTTTT-T-TTCAAAT-AAA---AGAAAGAGCAA--T-CGTCTTTAG-TAAA-TTTGTCA-A--TAAA-AATAAAC-A-TT-TAGCCCATA---TATT-TTATTTTTTTTATCTTA--T--AT---AT-TTC-ATTTGAA-GACT-C-AGAT---AGT-CGCTGG-GG-T---A-TT-----AC-GACATT--TGCAA--GATTTACTTCCGTTTCCACG-AGTCA-ATTTACG--TTAAAATCCTCATGA--TGCT-AA---GTgtgtagccgaaaatataataacaattgatatctgttgttccctacttaacaagtggcagacaa
gi|16 : GTG---AT--GCC-GC-A----------GCT-C-----AGG-----CAT--GCGA--GAG-----------ATGT-AGGGCAA-TTC-GC-A--T-----T----T-T-TATAC-GCA-G-CA-AG-A-GCA-TCAGC-C--A-ACACT-TCAAACTC-C-AC-A--AC--ATGTC-T-TC-C-C--TCCCTCCAGG-CG--TT--GCC-GAAATT-G-TAGT-TT-AG-G--T-GCACAGTGG-T-------TCCGAAA-CATG----T--AG-C-------A-------CC-GCAA-CCTCA-AGTGTTAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ATGGAA-TGATTG-AAAACA-CAGCAT-G-TCG--TAATA-TTTCACTTTAT-T-act
gi|18 : TTAT-T-TTTAGAT-AAATCAGGAAATAGCAAAATGCGTCTT-GG-TATACTTTGTCA-A--TCAAGAATAAACTA-TT-TAAGCCA-A---TAAT-TTAT-TTTTTTAGCTCA--ACCATGGAAT-TTT-ATTTGAAGGACT-CGGCAG---AAT-TGTTGGCGGATGTGA-TTATTAAAC-GACATT--AGTAATGGATTT-----------CCCATACTCGTAATTACG---TTTTTTCGTCATGAATTTGT-AAATTGTCTTaa
gi|19 : ttta-CATT--TTTA-T-GCG-GCAT-G--CCCA-TA-------TAT-TT-GG-A--C----C-GTG-TATCAGTATCAGTCTTCT-T-TT-CT--AA-CA-------CAAAAAG--C-AA-TT-G--CA--C---------TT--TTTT-A-T------GA--T-AATCA---T-TCC-AA-CT--T-CATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-G-ATGGC---AGA--CA---A-CCCAAA-G--T
gi|2 : gttcaaatcataaacatctgaaattatcttttaatctttaaaaaaaaataatttcagGAGCTA--ACT-CTAATAAA--CTGATTGAAAGC-T-T--G-TTT--ACAAA-CA-TA-T-GTAGATTCA----AA-AAAAA--AAAAAAAAAAAAAAACC-A--CAAT-AC-------GCATA-TA-A------TGTCAGTT-ACTGGAA----A-TGT-T-ATTTAA------CCAAA-TG-TG--C-A--C--TG--TTCA-GCA-TA--GG-AAT-T--A----TC---T--TT--GTTGAT----------------------AA-TGAA-G-C---------------------GTT-A-TC-T-CGT-CATA--TTTA-T-GCCCACAT--T-CCTC-TC-------CAT-TT-TG-A--CAGTCT-GTG-TATCAGT----------TAT-T--CT--AA-CA-------CAAAAAG--C-TA-TT-G--TA--C---------TT--TTTT-A-T------AA--T-AATCA---T-TAG-AA-CT--TC-ATTCAA-T-AAA---TT-T-----TC---AA-A-C--CTTTA---T-A-ATGGC---AGA--CA---A-TCCAAA-G--TT-G-----GTG---AT--GTC-GC-AG-G---C---------------GT--G-T----------GAA--AGCT---G-A-AT-GGGTAAA-C-C-GC-A--T-----T----TTT-TACAC-CCT-G-CG-AG-G-GCA-TCAGC-T--A-ACACC-CCCAACTC-A-AC-A--AC--ATG-CCT-CC-C-C--TCCCTCCAGT-CG--TT--GCT-AAAATT-G-TAGT-TC-GG-G--T-GCACAGTGT-CGTCTGTATCTGAGA-CTCGA-TA-------------------------GCA----TCG-AGCATAAACAT-G----ATCGT
gi|20 : catcgtatctaaaatattattacacacaattacacataactctgaatgctaactgaatcataatttaaaatgatttttgataataaattttgacaacagatatgctgggaggcaattaaataacaatgagctgccctcctatctctttgtagtacatgtaccttgcacatgtttagagctcctattttcttattgttaataacttgtgaatatatcaataattttggaaggggtggggcatttttgataaatgtacataaattataaaagaggggcagcttaaagatttaggcaggtgacttagactactattttataataatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggTTAT-T-AT-AGAT-ATT---AAAAATAGCAA--TTCGTTTCTGG-TATA-TTTGTCATATTC------TATAT-A-TTATAGCCAATA---ATAT-TTA--T-----AGCTCATTA--AT---ATATTT-ATTGCAA-GACTTC-GCAG---AAT-TGTTGG-GGAT---A-TT-----ACGGACATT--AGTAA--GATTC-------------CGTACTCG-AATTACGGCTTTTTTCCGTCATGAC-TTGTCAAC--GTCTTtgtaa
gi|23 : ttaaA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AA-CA-------CAAAAAG--C-AA-TC-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TC
gi|24 : T-C-GCAG---AGT-TGTAGG-GG-T---A-TT-----ACTGATATT--AGTAA--GAGTT-----------
gi|3 : aaGAGCTATAACT-CTAAAAAAAACAGATTGA-AGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CC-AAAAA--T--------------CC-A--CATT-ACTA-----GCA-A-T--AGCATA-TGTTAGTT-G--GAAA----A-TAT-C-ATTTAA------CCAAA-TG-TG--A-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGACTTAA--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG---AT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--CCTTCT-T-T--CT--AA-CA-------C-AAAAG--T-AA-TT-G--TA--C---------AT--TTTT-A-T------TA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AACA-C--CTTAA---T-A-ATCGC---AGA--CA---ACTCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTCAGCT-CAAATCAGGT--GTCAT--GCGA--GGA--TGCT---C-ATGT-GAGGCAA-TTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACA-T-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-G-AATT-G-CAGT-TT-GG-G--TGGCACAGTGGCC-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGT-AACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTT-GAATCA-CGGCAT-G-TCG--TAATA-TTTCACTTTATAT-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTT-G-CAT--TTTGTCA-A--C----AATAAAT-A-TT-AAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT--TTTGAA-GACT-C-GCAG---AATCTGTTGG-GGAT---ACTT-----AC-GACATT--AGTCA--GA-TT-----------CACGTA-TCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTTacttccttttgcacatacc
gi|4 : TATAACTTCTAAATAAAACAGATTGAGAGCTT-CCAA-TTT---CAAA-CA-TG-T-GCAGACCCC----CA-AAAAA--T--------------CC-A--CATTAAC-A-----GCA-A--A-AGCATA-TGTTAGTT-G--G-AA----A-TAT-C-ATTTAA------CCAAA-TG-TGGAA-A--CACTG--TTC--ACA-TA--GG-AAT-T--G----TTTTCT-GTT--G-TGATT--A--CAG----GA-C----TAG-TGAA-G--ATTTC--TTAAA-CCGG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GC--GCAT-GT--CCA-TA-------CTA-TT-TG-A--C----C-GCG-TATCAGT--C--TCTT-T-C-T--CTA-AA-CA-------C-AAAAG--T--A-TT-G--AT--C---------CA--TTTT-A-T-------A--T--ATAA---T-TTC-AA-CT--TTC-TTCAA-T-GAAT--TT-T-----TC---AA-A-C--CTTAA---TGA-ATCGC---AGA--CA---A-TCCGAA-GCTTTCGCG-TCGTGT--AT--G-C-GC-AAGG---CTCAGCCAC-AATCAG----G-CAT---CGA--GGA--TGCT---CGATGT-AGGGCAA-TTC-GC-A--T-----T----CTT-TACAC-GCA-G-CG-AG-A-GCATTCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGT-CT-TC-T-C--T-CCTCCA-G-CG--TT--GCT-GAAATT-G-CAG--TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGACTGTTAG--T-------A-------CC-GCAA-CCTCG-AGTGTAAAC-T-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATT
gi|6 : gatctgccgattatcgaattaattttgctagggtgtgggggcattttttttgcactagctgttattttgtacactgtacaaaagagcggaacaacttgaggatatgaaacatgttacttactactttattaaagtaatcaaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttccttcagagagacccaTAACT-CTAATTAAAACAGATTGA--------------T--AC-------------------CC----CA-AAAAT--T--------------CCCA--CATT-AC-A-----GCA-A-TA-AGTGTA-TGTTAGTT-G--GAA-------TAT-T-ATTTAA------CCAAA-TT-GG--C-AT-CACTCATTTCA-AC--TA--GGGAAT-T--T----TT---T-GTT--GTTGAT---A--CAG----GA-T----TAG-TGAAAG-CATTCT--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATG--CTTA-T-GCG-GCAT-GT-CC-A-TA-------CAT-TT-TG-AGGC----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AAACAA------CAAAAAG--C-AA-TC-GCATA--C---------TT--TTTTTA-TTTGGGGGAATT-AA-GA---TATTC-AA-CT--TC-ATTCAA-T-GAA---TT-T-----TC---AA-AAC--CTTAA---T-A-CTCGC---AAA--CA---A-TC--AA-A--TTC--------------------------------C-GC----GGTC--GT--G--A---GCGA--GGA--TGCT---C-ATGTAGGGGCAA-C-C-GC-ACTT-----T----TCT-TATAC-GCACG-CGCAGCA-GCA-TCTGC-C--AGACATT-CCCAACTC-C-AC-A--A---ATGTCGT--C-T-C--TCC-TCCAGA-CG--TTT-GCT-GAAATT-G-TTAT-TG-GGTG--T-GCACAGTGG-C-------TCCGAAA-CAT-A-TAC--A--TTCACAGCA-------CC-GCA---CTCG-AGTG-AAACAT-G-C-TGTCGTCA--TT-C-TC-GTC-ACGGAA-TGATTGAAAAACA-CGG-AT-GTTCT--TAATATTTTCACCATAT-TATTTAAATAAAA---AAAAATAGCAA--T-CGTCTTTGGTTATA-TTTGCCA-A--CAAGAAATAAAC-ATTT-TAG-CCATATTCTAATCTTA---TGTTTAGCTCC--A--AT---AT-TTTAATTTGAA-AACT-A-GCAG---AAT-TGTTGG-GGAT---T-GA-----AC-GACATTGCAGTAA--GA-TT-----------CACGTATTCG-AATTACG---TTTTTTCGTCATGA--
gi|7 : agcTAACT-CTAATAAAA-CAGATTGAAAGC-T-TC---------CGAA-CA-TG-T-GCGGACTCC----CA-AGAAAACT--------------TC-A--AAAT-AC-A-----ACA-A-TA-AGTGTA-AGTTAGTT-G--GAAA------TAT-T-ATATAA------CCAAA-TG-TG--C-A--CACTG--CTCA-ACATTA--GG-AAT-T--G----TT---T--TG--GTTGATT--A--CAG----GA-------AGTTAAA-T-CATTTC--TTCAA-CCCG--A-GTT-A-TC-T-C-T-CATAGCTTTA-T-GCG-GCAT-GT---CATTA-------CA--TT-TG-A-------T-GCG-GATCAGT--CGTTCTT-T-T-T--CT--AA-CG-------TAGCAAG--C-AA-TG-T--TA--A-------------TATT-A-T------GA--TAAATCA---T-TTA-AA-CA--T-CATCAAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA-----A----GC---AGA--CA---A-TCCAAA-G--TT------------------------AA-G---TTC-----T-GAGCA--T--ACCAT--GCCA--GAG-----------ATGTAGGGGCAA-CTC-GC-A--T-----T----TCA-TACAC-GCA-G-CG-TG-A-GCA-TCAGC-C--A-ACATT-CCCAAATC-C-AC-A--AC--ATGT-CT-TC-C-T--TCCCTCCAGG-CG--TA--GCT-GAAATT-G-TAGT-TT-AA-G--T-GCACAGTGG-C-------TCCGAAG-CATGA-TGT--AG-C-------A-------CC-GCAA-CCTCG-AGTGCAAACACGG-CATGTCGTAA--TA-T-T---TC-AC--------TT-----------------------TATTA-TTTCAA---AT-----TAAA--AAA------AATTGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-ATTT-TAGCCCATC---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TGT-ATTTGAA-GACT-C-GCAGAATAAT-TGCTGG-GGGT---A-TT-----AC-GACATT--AGTAA--GAGTT-----------
gi|8 : agcAGAGC-TTCCAA-TTT--ACAAAACAGTG-TAGCAGACTCCGCGCCA-AAAAAA-T--------------CC-ATCCATT-AA-GAAG--GCA-A-TAGAGTGCAATGTTGGTTTG--GAGA----AGTAT-T-ATTAAT------CCAAA-TGCTG--C-AAGCACTG--TTCA-ACA-TACAGC-GATGT--T----TT---T-GTT--GTTGATT--AATCAG----GA------TAG-TGAA-G-CATTTCCTT--AA-CCCG--ATGTTGA-TC-TTCTT-CAT---CTTA-T-GCG-GCATTGT-CCAA--A-------CAT-CTATG-A--C----C-GCG-TACAAGT--C--T--TCT-T-T--CCTAAA-CA-------CAAAAAAGCC-AA-TT-G--TAGTC---------TTG-TTTT-A-T------CA----AATAAATTT-TTCGAA-CT--TGCATTCAA-TTGAAGCTTTGT-----TCCGAAA-G-CGGCTTAACATT-A-ATCGC---AGAAGCAG--A-TCCTAATG--TTCGCGGTCGTG---ATCTGCCAGC-AA-GAACTTC-GCT-C-GA---GATAAG-CAT--GCGAAGGGA--TGCT---C-ATGTAGGGGCAA-CTCCGC-A--T-----TGTGCTTT-CACAC-GC--G-CG-AG-A-GCA-TCAGCTC--A-ACATTTCCCAACTCGC-AC-AGAACTAGTGTTCTCTCGT-C--ACCTCCCAGG-CG--TCTGGCT-GAAATTTG-TAGT-TTTGG-G--TTGCACATTTG-C-------TCCGAAG-CATGA-TGT--ACGT-------A-------CCTGCAATCCTCG-AGTGTAAACAT-GCC-TGTCGTCAGTTT-C-TTAGTC-ACGGGA-TGACTT-GAAACG-C-GCAT-G-TCG--TAAacttcccttttcatgtatc
gi|9 : tgaTTGAGAGC-T-CCAA-CTTTAACAAA-CA-TGCT-GCAGACTCC----CCCAAAAA--T--------------CC-A--CATTTAC-A-----GCA-A-TA-AGTGCA-TGTT-GTT-G--GAAA------TAT-TCATTTAA------CCAAA-TG-TG--CCA--CACTG--TTCA-ACA-TA--GC-AAT-T--GGTTCTT---T-GTTCTGCTTATT--A--CAG----GAAC----TAG-TGAA-G-CAT--C--T--AAACCCG--A-GTT-A-TC-T-CTTACATA--CTTA-TTGCG--CAT-GA-TCCA--A-------AAT-TT-GG-A--CG---C-GCGGTATCAGT--C--TTTCTT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TTGG--TA--CCATGTTTCTTT--TTTC-A-T----------T-AATAAT--T-TTC-AA-CT--TCCATTCAAGT-GAATT-TT-T-----TC---AA-A-C--CTTAA---T-AGATCGC---AGA--CA---A-TCCAAA-G--TTCGCGTTCGTG---AT--GCC-GCGAA-A---CTA-GCT-CAGATCA-GT----CATTAGC-A--GGA--TGCT---C-ATGA-GGGGGAA-CTC-GT-A--T-----T----TGT-T-CACGGCT-G-CGAAG-AGGCA-TCAGC-C--AGACATT-CCCAACTC-C-ACAA--AC--ATGT-CT-TC-T-CGTTCCCTCCAGGCCG--TT--GCT-G-AATT-GATAGTGGT-GG-GCAT-GCACA-TTG-C-------TCCGAAACCAT-A-TGT--A--T-------AGGTTTACCC-GCAA-CCTCGAAGTGTAAACAT-G-C-TGC--TCA--TTACATT-GTCAACGGAA-TGATTG-AAAACACCGGCATGG-TCGCTCAATC-TTTT-TTTTAT-T-Tat
blockSeqs : T A A T TCCAA TAA A A G C A GCGC C AAAAAAAAAAAAAAAA C TC A GAAG T . G T A A T CT AG . C . A C GAAA A AT . T CA G G GGTTC TTC G CT T TTA AT . AC T A . T CT TA A TT T GA . T A AGC . T CA T C TT . . A . CAGTC . G ATCAGTCT C A A T TA A A GC . . G CA GT CATGTTTCTTT T . TTGGGGGAATT ATT A G . . CC G T GCT G . CGA C A GG CATTA . AG G C T CT CGCGGTCGTGATCTGCCAGCAAGAACTTCGCTCGAGATAAG TA G AG A CG A . T C . CT TGTGC T . G AC . C C G T T . G C T G . A GA TA CC C GT GT C . TG . A T A G T T CA G C GTCTGTA C G C ATTCACAGCA T AT A G C A GT A A A A . GA C A G T CT T ACT AT T A TCAG AATG G T C T TCAAG T T A G TTC C T ACC GGA A A G T G AAT C C A GTGA ATTAA G GC TG T CC C T GCT AT C ATT
blockSeqs : . A G . CCAA A A . . . . . . AACT . . T TA . . . C A A . . A . . . . . CAAG A . . . . . . GT . G . T T . . C . . . T . TA . . . A . . . T . . G . C T . . . . GGC . . CGTTCT C . A . A . . . . . . . . TTG . . GATA T . . . . TC . . TT . . . . . . TGA . . . . . . CGCGTCGTGATGCCGCAAGCTCAGCTCAAATCAGGTGT . G . T G A . T . . . T C . . A . A . . . . . G C . . . . . . CC . C . . . T . A . . . . . . T . . . G . ATAGGTTTAC . A . . . . . . . . . . G . G . . . . ACT TA T . A TT G . . . CAAGA . T . C . . . TTA . . . . . . . . . A AC . T . . T CA C . T C . C
blockSeqs : . A A . CCAA A A . . . . . . AAT . . . A . . . C . A . . A . . . . . CAT A . . . . . . A . G . T T . . C . . . T . TC . . . A . . . A . . G . C T . . . . CG . . CCCT C . . . . . . . . . . . . TT . . GAT . . . . . GC . . T . . . . . . TAG . . . . . . CGCGTCGTGTATGCGCAAGGCTCAGCCACAATCAGG . G . T C A . T . . . T T . . T . . . . . . . . T . . . . . . CG . C . . . . . A . . . . . . . . . . G . TAGTA . A . . . . . . . . . . T . G . . . . ACC T T . A T G . . . CAAAG . . . C . . . A . . . . . . . . . A A . . . . G CA T . . . . .
blockSeqs : . . G . CCAA A G . . . . . . AT . . . A . . . T . A . . A . . . . . CCA A . . . . . . G . G . T T . . T . . . T . . . . . A . . . A . . G . C T . . . . C . . CTCT C . . . . . . . . . . . . TT . . AAT . . . . . CC . . . . . . . . . TG . . . . . . CGCGTTCGTGATGCCGCGAAACTAGCTCAGATCAGT . G . T C . . T . . . T C . . A . . . . . . . . T . . . . . . TC . T . . . . . A . . . . . . . . . . G . ACGTA . A . . . . . . . . . . T . G . . . . AA T T . A T G . . . TTC . . . C . . . A . . . . . . . . . A A . . . . G . . . . .
blockSeqs : . . G . TG A A . . . . . . AT . . . A . . . T . A . . . . . . . . CA A . . . . . . G . G . T T . . . . . . T . . . . . A . . . A . . G . C T . . . . C . . CTTT C . . . . . . . . . . . . TT . . GAT . . . . . C . . . . . . . . . TA . . . . . . GGTGATGTCGCAGGCGTG . C . T C . . T . . . T C . . A . . . . . . . . T . . . . . . C . T . . . . . A . . . . . . . . . . G . AGCA . A . . . . . . . . . . G . . . . . . TT T . . . T . . . . C . . . . . . . A . . . . . . . . . G T . . . . .
blockSeqs : . . TC . A . . . . . . TT . . . A . . . T . A . . . . . . . . CA A . . . . . . T . G . C T . . . . . . T . . . . . A . . . G . . G . T T . . . . C . . CT T . . . . . . . . . . . . AT . . TAT . . . . . C . . . . . . . . . TA . . . . . . AAGTTCTGAGCATAC . G . T C . . T . . . T T . . A . . . . . . . . T . . . . . . C . T . . . . . A . . . . . . . . . . . . ATA . . . . . . . . . . . . . . . . . . T . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . AT . . . A . . . T . G . . . . . . . . AA . . . . . . . G . . . . . . . . . . . . . . . . . A . . . A . . . . . T . . . . C . . CT . . . . . . . . . . . . . CA . . AT . . . . . C . . . . . . . . . TA . . . . . . CCGCGGTCGTG . . . . . . . . . . . T G . . T . . . . . . . . T . . . . . . C . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . CA . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . CT . . . . . . . . . . . . . TT . . CA . . . . . C . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .
blockSeqCons : CCAA** AT**************** A****** A***** ****** CA***** ** G****** G* ** T** **** ****** A** A** C* ******* CTCT**** ** ******* TT*********** GAT********* ** C* ***** TA***** *** *** T** C**** T********* ** C** ** ATA****************** CAAAG** ** CA*********** ***
originalCons : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----GA-C----TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--TCCATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TC-T-C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG--TTTTTTTCGTCATGA--TTGT-AA---GTCTT
finalCons : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-TCCAA--TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAAT----------------CC-A--CATT-ACA------GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAAA-----TAT-T-ATTTAA------CCAAA-TG-TGCA-----CACTG--TTCA-ACA-TA--GG-AAT-TG------TT---TG-TT--GTTGATT--A--CAG----GA------TAG-TGAA-G-CATTTC--T--AA-CCCG--A-GTTA--TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GTC-CCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGTCTCT----TCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--CTT-----------TTTT-A-TGAT---------AATAA---T-TTC-AA-CT--TC-ATTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAATA-----ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGAT--GCTC----ATGT-GGGGCAA-CTC-GC-A--TT---------TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCT-TCC--C--TCCCTCCAGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGTATA------------------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-ACAAAG--AATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTTAGCTCA--A--AT---AT-TTT-ATTTGAA-GACT-C-GCAG---AAT-TGTTGG-GGAT---A-TT-----AC-GACATT--AGTAA--GATTTCA-----------CGTACTCG-AATTACG---TTTTTTCGTCATGA--TTGT-AA---GTCTT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAATACATGTAAACTAGCAGTATGAACTGCATTAGTAGTACTATGATACACAATTTGTTTTGGGTAAATATAGTACTTAATATTTTTGGGTTAATCCAATACAGTTATCAATTCCTGAACTGTCGATGTCACCGACAACTCGAATCAGTTGTTGTTTTACATGATATAATAATACCTATATGATCGAATCAGGAGTATCTTTTCAATATTGTAATTTGTGTCTTCGTACACATTCCGGGCAGGAAGAAAATTGTTTCGTGGTTTTCGTTCGACAGCAGCAAATTTAGTATCAAGCCCACTCATCCCAATAATTATTGATAATTTTCGGAAAAATTATATATATCAGTAATTAACTTTGGTCCGGCTCCCATACTCTGCGTGTCATTTTTCAGCTGGCACCATCTATTACATGCGACAATGTCACAGGAATTGATGGCATCGTACCTAAAAAAGATACTACACATAAATTACATGTAAAACTACTGAGATGGCTAAACTGAATCATAGTTATTTTCTTTTTTCTTTCATATCATCACAACGTCTACAGTATGATGCGAAAAAAATTTTCAGCACTAAGTTAGTGATTTATCATAATATATATCATAATAATATTATGAATATTGGACATTGGACACTGGCAACATATTGCTGGGATGAAATCAATTAAACAATTGAGCCCCCCTCCCCCCCCCCCCCCTTCCCCTGGCCCCACCGTAGTAGTACATGATTACCTGCACGATGTTAATAACTCACTATTTTCTTATTGTTAGGTCTATTGGATCTTGCGTATTAATCATAATTTGTTAGGGGTTGGGGGGCATTTTTTTTTTTTTGCTACTAGCTGTTATATTTTACACTGTACAAAAGAGCGGACAACTTTGAGGATGAAACAGGTTACTACTACTTATTAAATAATCAAAT
Unaligned ( gi|5 ): AGGTATCAATTAACATGTATGAATTGTCGATGTCACCGACAACTGAATCAGTTTGTTTCATCTGTGATTCCACTAAAGTTACATGTATATAATACTGTACGATCAAGTCAGGAGTATTTTTTTCATATTGTCATTTTGTTGTAACATTCCGGGCAGAAAAAATTGTTTCGTGTTTTTCTCTGACAGCAGCAACTGTGTATTTGTCTTAGTATCAGCCCACTCATTCCCAATAATTATTGAATAATTCGAAAATATATATACCAATAATAACTTTGTGTCGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTACATGCACAAGTCACAGGAATTGATGCATCGCACCTTTAAAAAAATAGCTACACATAATTACAGGTAACTCCTGAAATGCTAACTGAATCATATTTATTTCTTTTTTTCTTTCTATATCATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAAT
Unaligned ( gi|10 ): ATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAATAATAACTCTGTGTCGGATCCACCATTACTCTGCTTTGTCCATTTTCCAGTTGGCACATTATTACATCGACAAGTCAAGGAATTATTTGATGGCATCGACTTTAAAAAAATACTAACACATAATTACATGTTAATTGAATGCTAACTGATTCATATTTTAATTTTCTTTTTTCTTCTTTATATCAGTCTACAATATGAATGCAAAAAATGTTCAGCACCTAGTTTGTGATTATTCAGTGCTAATTTATATACTATTATAAATCATGAAATGGATGAAACATGAACACTAACTGCTGGGGTGAAAAATTTATAACAATGAGCCCCCCCCTACCTAGTATGTAGTCTGTCCCGTGCACATGTTTTATAACTCATATTTTCTTATTGTTAGGTAATATTGGATCTTGTGATTATCATAATTTTGCCTAGGTCAGAGGGTGGGGGCATTTTTTTTTTTGCTAGCTGTTATATTTTACAGACTGTACAAAAGAGCAGACAACTTGGAGGATTTAAAACAGGTTACTACTTTATTAACTATCAAAT
Unaligned ( gi|13 ): TGAATAAGAAAACCTGCAGGTATGACTGTCAACAGTAGTCACTATTCGATACCACAAATTTAGGGGTAATTTTATAGTCACTTACTAGTATTTTGGGTTAATCAATTACAGGTATCAATTCTGAATGTTGAGTGCACCGACAATGAATCCAGTTTGTTCATTTCTGTGATCCAGCTATATAGTACATGATATGAATAATACTGTATGATCAAGTCAGGAGTATTTTTTCATACCAATTGTCAATTTGTTGTAACATTTCGGGCAGAAAAATTTGTTTCATGTTTTTTCTGACAGCAGCAAATGTGTATGTTGTCTTAGTATCAGCCCACTCATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAGTAATTAACTTTGTGTCGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTCATGCGACAAGTCACAGGAATTAAATTATTGTCAGATGCATCGTACCTTAAAAAAATACTACACA
Unaligned ( gi|14 ): ATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
Unaligned ( gi|17 ): CCATAACAATGACCCCCCCCCTTCCTAGTAGTACATGCACCGTTCACATGTTTAAACTGATCTACATGTAATTTTCTAATTGTTAAAATAATAATGGATTTTCTGCTTATCAATATTTTTGATAGGGGTGGGGGTATTTTTTGCTAGCTAAGATTATATTTTACACTGTACAAAAGAGAGCGAACAACTTGAGGATATGGACAATTGACTACTGTAATTAAATTATCAAAT
Unaligned ( gi|21 ): CATCCCAATAATTTATTGATAATTCGAAAAATATATATACCATGTAGTCAACTTTGTGTTGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTACATGCGACAAGTCACAGGAATTATTGATGCATCATACCAAAAAAAAAAAAAAAAATACTACACATGATTACATGTAACTCTGAATGCTA
Unaligned ( gi|22 ): TATAGGTAACTCCCTAAATATATATATATACCTGTAGCTAACTTTGTGTTGGCATCCCATATTCTTCTGTGTCGTTTTCCAGTTGGAACATTGTTAACAAATTCGCAGGTAGTATTCATGCATCGTATCTAAAATATTATTACACACAATTACACATAACTCTGAATGCTAACTGAATCATAAT
Alignments
lowQualScore : 1 111111 1111 333333333333333333 2222222 222222 111111 1111111 11 1111111 11 111 2222222222222222 11 111 1111111 1111111 22222222 1111111 2222222222222 222222222222 111 1 111 11111 1111111 111 88888888888888888888888888888888888888888888888888888 111 11111 1 1111111111 1 11 1 1111111 444444444444444444444 1 11 1111 1111 2222222 1 111 11111 111 111 11111111 1 1 2222222222222 2222 1111 11 1 222
lowQualScore : 6 1 6 5 000000 777 2 5 5 5 5 0000 5 000000000000000000 4 66 8 1111111 4 4 4 4 8 1 4 66 333333 4 4 222222 4 4 3333333 1 66 4 4 00 4 4 7777777 777 55 22 3 222 66 6666666666666666 4 4 4 2 66 88 4 66 4 555 4 4 4 111 4 4 77 4 99 0 44 3333333 4 4 4 3333333 4 4 11111111 4 4 8 99 99 4 7777777 0 55 4 4 4 55 55 1111111111111 4 4 111111111111 111 4 4 4 55 2 4 4 8 888 4 11111 777 4 4 66 0000000 777 66 222 4 4 66 22222222222222222222222222222222222222222222222222222 66 1 66 000 00000 3 4 1 4 4 66 1111111111 3 4 4 66 4 8 4 4 4 4 66 8 5 4 4 4 4 66 66 4 666666 4 4 4 66 00 4 1 4 4 5 5 5 66 0 5 6666666 5 2 5 333333333333333333333 5 88 5 0 4 4 4 66 0 5 5 5 5 00 5 3 0 5 5 77 6 444 777 1 6 3333 3333 1 6 6 6 5555555 6 3 6 2 111 6 99 6 33333 111 6 6 6 5 5 000 5 5 7 66666666 77 1 77 77 1 7777777777777 0 8 8 2222 7777 99 0 777
lowQualScore : . . . . ...... ... . . . . . .... . .................. . .. . ....... . . . . . . . .. ...... . . ...... . . ....... . .. . . .. . . ....... ... .. .. . ... .. ................ . . . . .. .. . .. . ... . . . ... . . .. . .. . .. ....... . . . ....... . . ........ . . . .. .. . ....... . .. . . . .. .. ............. . . ............ ... . . . .. . . . . ... . ..... ... . . .. ....... ... .. ... . . .. ..................................................... .. . .. ... ..... . . . . . .. .......... . . . .. . . . . . . .. . . . . . . .. .. . ...... . . . .. .. . . . . . . . .. . . ....... . . . ..................... . .. . . . . . .. . . . . . .. . . . . . .. . ... ... . . .... .... . . . . ....... . . . . ... . .. . ..... ... . . . . . ... . . . ........ .. . .. .. . ............. . . . .... .... .. . ...
lowQualScore : 7 3 5 0 555555 000 0 0 0 0 0 6666 0 999999999999999999 4 11 9 4444444 4 4 4 4 9 0 4 11 999999 4 4 888888 4 4 8888888 9 11 4 4 66 4 4 3333333 888 66 22 6 444 11 2222222222222222 4 4 4 0 11 33 4 11 4 333 4 4 0 666 4 4 33 4 11 1 88 0000000 0 0 0 0000000 0 0 66666666 1 0 0 55 55 0 0000000 8 55 0 0 0 55 55 5555555555555 0 0 888888888888 000 0 0 0 55 0 4 4 9 333 4 11111 888 4 4 11 2222222 888 11 222 4 4 11 55555555555555555555555555555555555555555555555555555 11 1 11 999 66666 3 4 9 4 4 11 6666666666 7 4 4 77 4 9 4 4 4 4 11 9 2 4 4 4 4 11 11 0 777777 4 4 4 11 66 4 9 4 4 0 0 0 99 0 0 2222222 0 5 0 999999999999999999999 0 22 0 4 4 4 4 99 0 0 0 0 0 00 7 0 7 7 7 99 7 777 111 7 7 3333 5555 0 7 7 7 7777777 7 3 7 5 777 7 22 7 77777 777 7 7 7 7 7 000 7 7 1 99999999 99 4 99 99 9 7777777777777 8 2 0 8888 0000 00 0 555
consensus : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----------GA--T-AG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--T-CA-TTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCTTC--CC--TC-CCTCC-AGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTT-AGCTCA--A--AT---AT-TTT-ATTTGAAG-ACT-CG-CAG---AAT-TGTTGG-GGAT------A-TTA--C-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG---TTTTT----TCGTCATGA--TTGT-AA---GTCTT
Reference ( family-3203 ) : GAGCTATAACT-CTAATAAAAACAGATTGAGAGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CA-AAAAA--T--------------CC-A--CATT-AC-A-----GCA-A-TA-AGCGTA-TGTTAGTT-G--GAAA----A-TAT-T-ATTTAA------CCAAA-TG-TG--C-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGATT--A--CAG----------GA--T-AG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG-GCAT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--TCTTCT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TT-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--T-CA-TTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-A-ATCGC---AGA--CA---A-TCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTC-GCT-C-GATCAGGT--G-CAT--GCGA--GGA--TGCT---C-ATGT-GGGGCAA-CTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGTCCTTC--CC--TC-CCTCC-AGG-CG--TT--GCT-GAAATT-G-TAGT-TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGTAAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTG-AAAACA-CGGCAT-G-TCG--TAATA-TTTCACTTTAT-T-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-A-TT-TAGCCCATA---TAAT-TTA--TTTTTT-AGCTCA--A--AT---AT-TTT-ATTTGAAG-ACT-CG-CAG---AAT-TGTTGG-GGAT------A-TTA--C-GACATT--AGTAA--GATTT-----------CACGTACTCG-AATTACG---TTTTT----TCGTCATGA--TTGT-AA---GTCTT
gi|11 : --T--------------CC-A--CATT-AT-AATGGTGCA-AATA-TTGGTA-TGCTTGTT-G--AAAAGATGA-TGTAT-ATATAAACCAATCCAAA-TG-TGTGC-A--CACTG--GCTACACA-TAA-GG-AAT-CTAG----TT---TTGTTTGATTGATTT-A--CAGTCTAGAGCATAA--T-AG-TGAA-GGCATATA--T--TA-CCCG--A-GTT-AATCAT-CTT-CATAA-CATAAT-G-G-GCAT-GTATCCA-TAAACACAACATATT-TGCA--C----AAGCG-TATCAATAGC--TCTTCT-T-TTCCT--AA-CAACATGATCACAAAG--CTAACTT-G--TA--C---------TTGATTTT-AAT------GA----AATAA---T-TTT-AAACTATT-CAATTCAA-TTGAA---TT-TGATTACC---AA-A-C---TTAA---T-ATATCACGCAAGA--CAGATA-CCCAAA-G--TTCGCC-TCGTGAGCAT--ATC-GC--A-G---CTC-GC-----ATCAG----G-CAT--GCGA--GGAACTGCTATGC-AGGT-AGGGCAAGCTC-GCAA--TCTTAAT----TCTATA-AC-GCA-GACG-A--A-GCA-TCAGC-CTAA-ACA-T-CCCAACTC-CAAC-A--AC--ATGT-CTTCATAC--TC-CCTCC--GG-CGTTTT--GCTAAAAATT-G-
gi|12 : TAACT-CTAATAAAA---GATTGAGAGC-T-TCAAATTT--ACCAA-CA-TG-T-GTAGACTCC----CA-AAAA---T--------------CC-A--CATT--C-A-----GCA-A-TA-AGTGTAATGT-AGTT-G--GAAA------TAT-T-ATTTAA------CCAAAATC-TG--C-A--C--TG--TTCA-ACA-TA--GG-GAT-T--GT---TT---T-GTT--G-TGATT--A--CAG----------GA--T-AG-TGAA-G-CATTTC--TTAAA-CCCGTTA-GTT---TC-T-ATT-acaatcaaaaagttataaacaaagatgcaacagtggcttaagctga
gi|15 : gatcttgtgattatcataattttgcctaggtcagagggtgggggcatttttttttttgctagctgttatattttacagactgtacaaaagagcagacaacttggaggatttaaaacaggttactactttattaactatcaaattggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagatgtagcT-G-C-TGTCGTCA--TTGT-TT-ATC-GCGGAAATAAGTG-AAAACA-CGGCAT-G-TCG--TAATC-TTTTTTTTTTT-T-TTCAAAT-AAA---AGAAAGAGCAA--T-CGTCTTTAG-TAAA-TTTGTCA-A--TAAA-AATAAAC-A-TT-TAGCCCATA---TATT-TTATTTTTTTT-ATCTTA--T--AT---AT-TTC-ATTTGAAG-ACT-CA-GAT---AGT-CGCTGG-GG-T------A-TTA--C-GACATT--TGCAA--GATTTACTTCCGTTTCCACG-AGTCA-ATTTACG------TTAAAATCCTCATGA--TGCT-AA---GTgtgtagccgaaaatataataacaattgatatctgttgttccctacttaacaagtggcagacaa
gi|16 : GTG---AT--GCC-GC-A----------GCT-C-----AGG-----CAT--GCGA--GAG-----------ATGT-AGGGCAA-TTC-GC-A--T-----T----T-T-TATAC-GCA-G-CA-AG-A-GCA-TCAGC-C--A-ACACT-TCAAACTC-C-AC-A--AC--ATGTC-TTC--CC--TC-CCTCC-AGG-CG--TT--GCC-GAAATT-G-TAGT-TT-AG-G--T-GCACAGTGG-T-------TCCGAAA-CATG----T--AG-C-------A-------CC-GCAA-CCTCA-AGTGTTAACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ATGGAA-TGATTG-AAAACA-CAGCAT-G-TCG--TAATA-TTTCACTTTAT-T-act
gi|18 : TTAT-T-TTTAGAT-AAATCAGGAAATAGCAAAATGCGTCTT-GG-TATACTTTGTCA-A--TCAAGAATAAACTA-TT-TAAGCCA-A---TAAT-TTA--TTTTTTTAGCTCA--ACCATGGAAT-TTT-ATTTGAAGGACT-CGGCAG---AAT-TGTTGGCGGATGTGATTA-TTAAAC-GACATT--AGTAATGGATTT-----------CCCATACTCGTAATTACG---TTTTT----TCGTCATGAATTTGT-AAATTGTCTTaa
gi|19 : ttta-CATT--TTTA-T-GCG-GCAT-G--CCCA-TA-------TAT-TT-GG-A--C----C-GTG-TATCAGTATCAGTCTTCT-T-TT-CT--AA-CA-------CAAAAAG--C-AA-TT-G--CA--C---------TT--TTTT-A-T------GA--T-AATCA---T-TCC-AA-CT--T-CA-TTCAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA---T-G-ATGGC---AGA--CA---A-CCCAAA-G--T
gi|2 : gttcaaatcataaacatctgaaattatcttttaatctttaaaaaaaaataatttcagGAGCTA--ACT-CTAATAAA--CTGATTGAAAGC-T-T--G-TTT--ACAAA-CA-TA-T-GTAGATTCA----AA-AAAAA--AAAAAAAAAAAAAAACC-A--CAAT-AC-------GCATA-TA-A------TGTCAGTT-ACTGGAA----A-TGT-T-ATTTAA------CCAAA-TG-TG--C-A--C--TG--TTCA-GCA-TA--GG-AAT-T--A----TC---T--TT--GTTGAT-------------------------AA-TGAA-G-C---------------------GTT-A-TC-T-CGT-CATA--TTTA-T-GCCCACAT--T-CCTC-TC-------CAT-TT-TG-A--CAGTCT-GTG-TATCAGT----------TAT-T--CT--AA-CA-------CAAAAAG--C-TA-TT-G--TA--C---------TT--TTTT-A-T------AA--T-AATCA---T-TAG-AA-CT--T-CA-TTCAA-T-AAA---TT-T-----TC---AA-A-C--CTTTA---T-A-ATGGC---AGA--CA---A-TCCAAA-G--TT-G-----GTG---AT--GTC-GC-AG-G---C---------------GT--G-T----------GAA--AGCT---G-A-AT-GGGTAAA-C-C-GC-A--T-----T----TTT-TACAC-CCT-G-CG-AG-G-GCA-TCAGC-T--A-ACACC-CCCAACTC-A-AC-A--AC--ATG-CCTCC--CC--TC-CCTCC-AGT-CG--TT--GCT-AAAATT-G-TAGT-TC-GG-G--T-GCACAGTGT-CGTCTGTATCTGAGA-CTCGA-TA-------------------------GCA----TCG-AGCATAAACAT-G----ATCGT
gi|20 : catcgtatctaaaatattattacacacaattacacataactctgaatgctaactgaatcataatttaaaatgatttttgataataaattttgacaacagatatgctgggaggcaattaaataacaatgagctgccctcctatctctttgtagtacatgtaccttgcacatgtttagagctcctattttcttattgttaataacttgtgaatatatcaataattttggaaggggtggggcatttttgataaatgtacataaattataaaagaggggcagcttaaagatttaggcaggtgacttagactactattttataataatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggTTAT-T-AT-AGAT-ATT---AAAAATAGCAA--TTCGTTTCTGG-TATA-TTTGTCATATTC------TATAT-A-TTATAGCCAATA---ATAT-TTA--T------AGCTCATTA--AT---ATATTT-ATTGCAAG-ACTTCG-CAG---AAT-TGTTGG-GGAT------A-TTA--CGGACATT--AGTAA--GATTC-------------CGTACTCG-AATTACGGCTTTTTT----CCGTCATGAC-TTGTCAAC--GTCTTtgtaa
gi|23 : ttaaA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AA-CA-------CAAAAAG--C-AA-TC-G--TA--C---------TT--TTTT-A-T------GA--T-AATAA---T-TTC-AA-CT--T-C
gi|24 : T-CG-CAG---AGT-TGTAGG-GG-T------A-TTA--CTGATATT--AGTAA--GAGTT-----------
gi|3 : aaGAGCTATAACT-CTAAAAAAAACAGATTGA-AGC-T-CCAA-TTT--ACAAA-CA-TG-T-GCAGACTCC----CC-AAAAA--T--------------CC-A--CATT-ACTA-----GCA-A-T--AGCATA-TGTTAGTT-G--GAAA----A-TAT-C-ATTTAA------CCAAA-TG-TG--A-A--CACTG--TTCA-ACA-TA--GG-AAT-T--G----TT---T-GTT--GTTGACTTAA--CAG----------GAC-T-AG-TGAA-G-CATTTC--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GCG---AT-GT-CCCA-TA-------CAT-TT-TG-A--C----C-GCG-TATCAGT--C--CCTTCT-T-T--CT--AA-CA-------C-AAAAG--T-AA-TT-G--TA--C---------AT--TTTT-A-T------TA--T-AATAA---T-TTC-AA-CT--TCCA-TTCAA-T-GAA---TT-T-----TC---AACA-C--CTTAA---T-A-ATCGC---AGA--CA---ACTCCAAA-G--TTCGCG-TCGTG---AT--GCC-GC-AA-G---CTCAGCT-CAAATCAGGT--GTCAT--GCGA--GGA--TGCT---C-ATGT-GAGGCAA-TTC-GC-A--T-----T----TCT-TACAC-GCA-G-CG-AG-A-GCA-TCAGC-C--A-ACA-T-CCCAACTC-C-AC-A--AC--ATGTCCTTC--TC--TC-CCTCC-AGG-CG--TT--GCT-G-AATT-G-CAGT-TT-GG-G--TGGCACAGTGGCC-------TCCGAAA-CATGA-TGT--A--T-------A-------CC-GCAA-CCTCG-AGTGT-AACAT-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATTT-GAATCA-CGGCAT-G-TCG--TAATA-TTTCACTTTATAT-TTTAAAT-AAA---AGAAATAGCAA--T-CGTCTTT-G-CAT--TTTGTCA-A--C----AATAAAT-A-TT-AAGCCCATA---TAAT-TTA--TTTTTT-AGCTCA--A--AT---AT-TTT--TTTGAAG-ACT-CG-CAG---AATCTGTTGG-GGAT------ACTTA--C-GACATT--AGTCA--GA-TT-----------CACGTA-TCG-AATTACGT--TTTTT----TCGTCATGA--TTGT-AA---GTCTTacttccttttgcacatacc
gi|4 : TATAACTTCTAAATAAAACAGATTGAGAGCTT-CCAA-TTT---CAAA-CA-TG-T-GCAGACCCC----CA-AAAAA--T--------------CC-A--CATTAAC-A-----GCA-A--A-AGCATA-TGTTAGTT-G--G-AA----A-TAT-C-ATTTAA------CCAAA-TG-TGGAA-A--CACTG--TTC--ACA-TA--GG-AAT-T--G----TTTTCT-GTT--G-TGATT--A--CAG----------GAC-T-AG-TGAA-G--ATTTC--TTAAA-CCGG--A-GTT-A-TC-T-CTT-CATA--CTTA-T-GC--GCAT-GT--CCA-TA-------CTA-TT-TG-A--C----C-GCG-TATCAGT--C--TCTT-T-C-T--CTA-AA-CA-------C-AAAAG--T--A-TT-G--AT--C---------CA--TTTT-A-T-------A--T--ATAA---T-TTC-AA-CT--T-TC-TTCAA-T-GAAT--TT-T-----TC---AA-A-C--CTTAA---TGA-ATCGC---AGA--CA---A-TCCGAA-GCTTTCGCG-TCGTGT--AT--G-C-GC-AAGG---CTCAGCCAC-AATCAG----G-CAT---CGA--GGA--TGCT---CGATGT-AGGGCAA-TTC-GC-A--T-----T----CTT-TACAC-GCA-G-CG-AG-A-GCATTCAGC-C--A-ACATT-CCCAACTC-C-AC-A--AC--ATGT-CTTC--TC--T--CCTCC-A-G-CG--TT--GCT-GAAATT-G-CAG--TT-GG-G--T-GCACAGTGG-C-------TCCGAAA-CATGACTGTTAG--T-------A-------CC-GCAA-CCTCG-AGTGTAAAC-T-G-C-TGTCGTCA--TT-C-TT-GTC-ACGGAA-TGATT
gi|6 : gatctgccgattatcgaattaattttgctagggtgtgggggcattttttttgcactagctgttattttgtacactgtacaaaagagcggaacaacttgaggatatgaaacatgttacttactactttattaaagtaatcaaattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttccttcagagagacccaTAACT-CTAATTAAAACAGATTGA--------------T--AC-------------------CC----CA-AAAAT--T--------------CCCA--CATT-AC-A-----GCA-A-TA-AGTGTA-TGTTAGTT-G--GAA-------TAT-T-ATTTAA------CCAAA-TT-GG--C-AT-CACTCATTTCA-AC--TA--GGGAAT-T--T----TT---T-GTT--GTTGAT---A--CAG----------GA--TTAG-TGAAAG-CATTCT--T--AA-CCCG--A-GTT-A-TC-T-CTT-CATG--CTTA-T-GCG-GCAT-GT-CC-A-TA-------CAT-TT-TG-AGGC----C-GCG-TATCAGT--C--T--TCT-TAT--CT--AAACAA------CAAAAAG--C-AA-TC-GCATA--C---------TT--TTTTTA-TTTGGGGGAATT-AA-GA---TATTC-AA-CT--T-CA-TTCAA-T-GAA---TT-T-----TC---AA-AAC--CTTAA---T-A-CTCGC---AAA--CA---A-TC--AA-A--TTC--------------------------------C-GC----GGTC--GT--G--A---GCGA--GGA--TGCT---C-ATGTAGGGGCAA-C-C-GC-ACTT-----T----TCT-TATAC-GCACG-CGCAGCA-GCA-TCTGC-C--AGACATT-CCCAACTC-C-AC-A--A---ATGTCGT-C--TC--TC-C-TCC-AGA-CG--TTT-GCT-GAAATT-G-TTAT-TG-GGTG--T-GCACAGTGG-C-------TCCGAAA-CAT-A-TAC--A--TTCACAGCA-------CC-GCA---CTCG-AGTG-AAACAT-G-C-TGTCGTCA--TT-C-TC-GTC-ACGGAA-TGATTGAAAAACA-CGG-AT-GTTCT--TAATATTTTCACCATAT-TATTTAAATAAAA---AAAAATAGCAA--T-CGTCTTTGGTTATA-TTTGCCA-A--CAAGAAATAAAC-ATTT-TAG-CCATATTCTAATCTTA---TGTTT-AGCTCC--A--AT---AT-TTTAATTTGAAA-ACT-AG-CAG---AAT-TGTTGG-GGAT------T-GAA--C-GACATTGCAGTAA--GA-TT-----------CACGTATTCG-AATTACG---TTTTT----TCGTCATGA--
gi|7 : agcTAACT-CTAATAAAA-CAGATTGAAAGC-T-TC---------CGAA-CA-TG-T-GCGGACTCC----CA-AGAAAACT--------------TC-A--AAAT-AC-A-----ACA-A-TA-AGTGTA-AGTTAGTT-G--GAAA------TAT-T-ATATAA------CCAAA-TG-TG--C-A--CACTG--CTCA-ACATTA--GG-AAT-T--G----TT---T--TG--GTTGATT--A--CAG----------GA----AGTTAAA-T-CATTTC--TTCAA-CCCG--A-GTT-A-TC-T-C-T-CATAGCTTTA-T-GCG-GCAT-GT---CATTA-------CA--TT-TG-A-------T-GCG-GATCAGT--CGTTCTT-T-T-T--CT--AA-CG-------TAGCAAG--C-AA-TG-T--TA--A-------------TATT-A-T------GA--TAAATCA---T-TTA-AA-CA--T-CA-TCAAA-T-GAA---TT-T-----TC---AA-A-C--CTTAA-----A----GC---AGA--CA---A-TCCAAA-G--TT------------------------AA-G---TTC-----T-GAGCA--T--ACCAT--GCCA--GAG-----------ATGTAGGGGCAA-CTC-GC-A--T-----T----TCA-TACAC-GCA-G-CG-TG-A-GCA-TCAGC-C--A-ACATT-CCCAAATC-C-AC-A--AC--ATGT-CTTC--CT--TC-CCTCC-AGG-CG--TA--GCT-GAAATT-G-TAGT-TT-AA-G--T-GCACAGTGG-C-------TCCGAAG-CATGA-TGT--AG-C-------A-------CC-GCAA-CCTCG-AGTGCAAACACGG-CATGTCGTAA--TA-T-T---TC-AC--------TT-----------------------TATTA-TTTCAA---AT-----TAAA--AAA------AATTGCAA--T-CGTCTTTGG-TATA-TTTGTCA-A--CAAAGAATAAAC-ATTT-TAGCCCATC---TAAT-TTA--TTTTTT-AGCTCA--A--AT---AT-TGT-ATTTGAAG-ACT-CG-CAGAATAAT-TGCTGG-GGGT------A-TTA--C-GACATT--AGTAA--GAGTT-----------
gi|8 : agcAGAGC-TTCCAA-TTT--ACAAAACAGTG-TAGCAGACTCCGCGCCA-AAAAAA-T--------------CC-ATCCATT-AA-GAAG--GCA-A-TAGAGTGCAATGTTGGTTTG--GAGA----AGTAT-T-ATTAAT------CCAAA-TGCTG--C-AAGCACTG--TTCA-ACA-TACAGC-GATGT--T----TT---T-GTT--GTTGATT--AATCAG----------GA--T-AG-TGAA-G-CATTTCCTT--AA-CCCG--ATGTTGA-TC-TTCTT-CAT---CTTA-T-GCG-GCATTGT-CCAA--A-------CAT-CTATG-A--C----C-GCG-TACAAGT--C--T--TCT-T-T--CCTAAA-CA-------CAAAAAAGCC-AA-TT-G--TAGTC---------TTG-TTTT-A-T------CA----AATAAATTT-TTCGAA-CT--TGCA-TTCAA-TTGAAGCTTTGT-----TCCGAAA-G-CGGCTTAACATT-A-ATCGC---AGAAGCAG--A-TCCTAATG--TTCGCGGTCGTG---ATCTGCCAGC-AA-GAACTTC-GCT-C-GA---GATAAG-CAT--GCGAAGGGA--TGCT---C-ATGTAGGGGCAA-CTCCGC-A--T-----TGTGCTTT-CACAC-GC--G-CG-AG-A-GCA-TCAGCTC--A-ACATTTCCCAACTCGC-AC-AGAACTAGTGTTCTCT--CG--TCACCTCCCAGG-CG--TCTGGCT-GAAATTTG-TAGT-TTTGG-G--TTGCACATTTG-C-------TCCGAAG-CATGA-TGT--ACGT-------A-------CCTGCAATCCTCG-AGTGTAAACAT-GCC-TGTCGTCAGTTT-C-TTAGTC-ACGGGA-TGACTT-GAAACG-C-GCAT-G-TCG--TAAacttcccttttcatgtatc
gi|9 : tgaTTGAGAGC-T-CCAA-CTTTAACAAA-CA-TGCT-GCAGACTCC----CCCAAAAA--T--------------CC-A--CATTTAC-A-----GCA-A-TA-AGTGCA-TGTT-GTT-G--GAAA------TAT-TCATTTAA------CCAAA-TG-TG--CCA--CACTG--TTCA-ACA-TA--GC-AAT-T--GGTTCTT---T-GTTCTGCTTATT--A--CAG----------GAACT-AG-TGAA-G-CAT--C--T--AAACCCG--A-GTT-A-TC-T-CTTACATA--CTTA-TTGCG--CAT-GA-TCCA--A-------AAT-TT-GG-A--CG---C-GCGGTATCAGT--C--TTTCTT-T-T--CT--AA-CA-------CAAAAAG--C-AA-TTGG--TA--CCATGTTTCTTT--TTTC-A-T----------T-AATAAT--T-TTC-AA-CT--TCCA-TTCAAGT-GAATT-TT-T-----TC---AA-A-C--CTTAA---T-AGATCGC---AGA--CA---A-TCCAAA-G--TTCGCGTTCGTG---AT--GCC-GCGAA-A---CTA-GCT-CAGATCA-GT----CATTAGC-A--GGA--TGCT---C-ATGA-GGGGGAA-CTC-GT-A--T-----T----TGT-T-CACGGCT-G-CGAAG-AGGCA-TCAGC-C--AGACATT-CCCAACTC-C-ACAA--AC--ATGT-CTTC--TCGTTC-CCTCC-AGGCCG--TT--GCT-G-AATT-GATAGTGGT-GG-GCAT-GCACA-TTG-C-------TCCGAAACCAT-A-TGT--A--T-------AGGTTTACCC-GCAA-CCTCGAAGTGTAAACAT-G-C-TGC--TCA--TTACATT-GTCAACGGAA-TGATTG-AAAACACCGGCATGG-TCGCTCAATC-TTTT-TTTTAT-T-Tat
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TGAATACATGTAAACTAGCAGTATGAACTGCATTAGTAGTACTATGATACACAATTTGTTTTGGGTAAATATAGTACTTAATATTTTTGGGTTAATCCAATACAGTTATCAATTCCTGAACTGTCGATGTCACCGACAACTCGAATCAGTTGTTGTTTTACATGATATAATAATACCTATATGATCGAATCAGGAGTATCTTTTCAATATTGTAATTTGTGTCTTCGTACACATTCCGGGCAGGAAGAAAATTGTTTCGTGGTTTTCGTTCGACAGCAGCAAATTTAGTATCAAGCCCACTCATCCCAATAATTATTGATAATTTTCGGAAAAATTATATATATCAGTAATTAACTTTGGTCCGGCTCCCATACTCTGCGTGTCATTTTTCAGCTGGCACCATCTATTACATGCGACAATGTCACAGGAATTGATGGCATCGTACCTAAAAAAGATACTACACATAAATTACATGTAAAACTACTGAGATGGCTAAACTGAATCATAGTTATTTTCTTTTTTCTTTCATATCATCACAACGTCTACAGTATGATGCGAAAAAAATTTTCAGCACTAAGTTAGTGATTTATCATAATATATATCATAATAATATTATGAATATTGGACATTGGACACTGGCAACATATTGCTGGGATGAAATCAATTAAACAATTGAGCCCCCCTCCCCCCCCCCCCCCTTCCCCTGGCCCCACCGTAGTAGTACATGATTACCTGCACGATGTTAATAACTCACTATTTTCTTATTGTTAGGTCTATTGGATCTTGCGTATTAATCATAATTTGTTAGGGGTTGGGGGGCATTTTTTTTTTTTTGCTACTAGCTGTTATATTTTACACTGTACAAAAGAGCGGACAACTTTGAGGATGAAACAGGTTACTACTACTTATTAAATAATCAAAT
Unaligned ( gi|5 ): AGGTATCAATTAACATGTATGAATTGTCGATGTCACCGACAACTGAATCAGTTTGTTTCATCTGTGATTCCACTAAAGTTACATGTATATAATACTGTACGATCAAGTCAGGAGTATTTTTTTCATATTGTCATTTTGTTGTAACATTCCGGGCAGAAAAAATTGTTTCGTGTTTTTCTCTGACAGCAGCAACTGTGTATTTGTCTTAGTATCAGCCCACTCATTCCCAATAATTATTGAATAATTCGAAAATATATATACCAATAATAACTTTGTGTCGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTACATGCACAAGTCACAGGAATTGATGCATCGCACCTTTAAAAAAATAGCTACACATAATTACAGGTAACTCCTGAAATGCTAACTGAATCATATTTATTTCTTTTTTTCTTTCTATATCATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAAT
Unaligned ( gi|10 ): ATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAATAATAACTCTGTGTCGGATCCACCATTACTCTGCTTTGTCCATTTTCCAGTTGGCACATTATTACATCGACAAGTCAAGGAATTATTTGATGGCATCGACTTTAAAAAAATACTAACACATAATTACATGTTAATTGAATGCTAACTGATTCATATTTTAATTTTCTTTTTTCTTCTTTATATCAGTCTACAATATGAATGCAAAAAATGTTCAGCACCTAGTTTGTGATTATTCAGTGCTAATTTATATACTATTATAAATCATGAAATGGATGAAACATGAACACTAACTGCTGGGGTGAAAAATTTATAACAATGAGCCCCCCCCTACCTAGTATGTAGTCTGTCCCGTGCACATGTTTTATAACTCATATTTTCTTATTGTTAGGTAATATTGGATCTTGTGATTATCATAATTTTGCCTAGGTCAGAGGGTGGGGGCATTTTTTTTTTTGCTAGCTGTTATATTTTACAGACTGTACAAAAGAGCAGACAACTTGGAGGATTTAAAACAGGTTACTACTTTATTAACTATCAAAT
Unaligned ( gi|13 ): TGAATAAGAAAACCTGCAGGTATGACTGTCAACAGTAGTCACTATTCGATACCACAAATTTAGGGGTAATTTTATAGTCACTTACTAGTATTTTGGGTTAATCAATTACAGGTATCAATTCTGAATGTTGAGTGCACCGACAATGAATCCAGTTTGTTCATTTCTGTGATCCAGCTATATAGTACATGATATGAATAATACTGTATGATCAAGTCAGGAGTATTTTTTCATACCAATTGTCAATTTGTTGTAACATTTCGGGCAGAAAAATTTGTTTCATGTTTTTTCTGACAGCAGCAAATGTGTATGTTGTCTTAGTATCAGCCCACTCATCCCAATAATTTATTGATAATTCGAAAAATATATATACCAGTAATTAACTTTGTGTCGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTTCATGCGACAAGTCACAGGAATTAAATTATTGTCAGATGCATCGTACCTTAAAAAAATACTACACA
Unaligned ( gi|14 ): ATCACAGTCTACAATATGATGCGAAAAAATTTCAGCATCTTAGTTAGTGCTATTATCATAATATTATATATAATAAAAATTATGAATATTGAACCACACTGCACTATGCTGGGGTGAAAATCAACAATGAGTCCCCCCCCCAACCTAGTAGTACATGTACCGTGCAACTATGTATTATAACTCATATTTTCTTATTGTTAGGTAAATTGGATCTTGCGATTATCAATAATTTTGCTAGGGTGGGGGCATTTTTTTGCTACTAGCTGTTATATTTACACTGTACAAACAGACGGACAACTTTGAGGATTGAAACAGTTTACTTACTACTTTATTAAATAATCAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
Unaligned ( gi|17 ): CCATAACAATGACCCCCCCCCTTCCTAGTAGTACATGCACCGTTCACATGTTTAAACTGATCTACATGTAATTTTCTAATTGTTAAAATAATAATGGATTTTCTGCTTATCAATATTTTTGATAGGGGTGGGGGTATTTTTTGCTAGCTAAGATTATATTTTACACTGTACAAAAGAGAGCGAACAACTTGAGGATATGGACAATTGACTACTGTAATTAAATTATCAAAT
Unaligned ( gi|21 ): CATCCCAATAATTTATTGATAATTCGAAAAATATATATACCATGTAGTCAACTTTGTGTTGGCATCCCATACTCTGCTGTGTCATTTTCCAGTTGGCACATTATTACATGCGACAAGTCACAGGAATTATTGATGCATCATACCAAAAAAAAAAAAAAAAATACTACACATGATTACATGTAACTCTGAATGCTA
Unaligned ( gi|22 ): TATAGGTAACTCCCTAAATATATATATATACCTGTAGCTAACTTTGTGTTGGCATCCCATATTCTTCTGTGTCGTTTTCCAGTTGGAACATTGTTAACAAATTCGCAGGTAGTATTCATGCATCGTATCTAAAATATTATTACACACAATTACACATAACTCTGAATGCTAACTGAATCATAAT