lowQualScore : 111111 111111111111 1111111 1 1 22222222222222222222 11 11 555555555555555555555 33333333333 2 33333333 1 1 333 7777777777777777777 33 3333 222
lowQualScore : 111111 555 666 777 77777 2 5555 33 33 222 2 888888888888 5555555 0 2 7 5 11111111111111111111 5 77 55 2 4 00 555555555555555555555 8 00000000000 0 11111111 0 3 0 777 3 3333333333333333333 7 99 5555 3 4 4 4 999
lowQualScore : ...... ... ... ... ..... . .... .. .. ... . ............ ....... . . . . .................... . .. .. . . .. ..................... . ........... . ........ . . . ... . ................... . .. .... . . . . ...
lowQualScore : 111111 000 777 888 88888 7 7777 77 77 888 7 333333333333 7777777 9 4 6 4 33333333333333333333 0 99 11 7 0 77 999999999999999999999 0 00000000000 0 44444444 6 2 6 000 0 0000000000000000000 0 33 0000 7 7 0 0 555
consensus : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-TG---T--AT--GAG-A-AA-T------------GGGGNGA--A-ACTCTA-CCACTGAGCTTCGCGAGC--GT--AGCGA------C--AGG-AATG--CANTGCGATTTCGGCAAA-NTCTGCTCTGG--TGCTTTATTAAGGCAAA-A-NACAACCAGCACGTGGCATAATTAACATCAGTCG----ATGTGTCCCACCTGATTTCTGGA-AGACANCCCTC---------T-GATTNCCTTAATTGACCCTAA--TCCAACGCAANCAACATNTCGCAANGNATCAANCNCCATGGGGGA
Reference ( gi|4 ) : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-TA---T--AT--GAG-A-AA-T------------GGGGTGA--A-ACTTTA-CCATTGAGCTTCTCGAGC--AT--AGCGA------C--AGG-AATG--CAACGCAATTTCGGCAAA-ATCTGCCCTCG--TGCTTTATCAACACAAA-A-GACGACCAGTACGTGGCCTAATTAACATCAAACA----ATGTTTCCCACCTGATTTCTGGACAGATAACCCTC---------TAAATTGCCTTAATTGACCCTAAATTCCAACACCAGCAACATTTCGCAAAGAATCAAAACCCATGGGGGA
gi|3 : ACAGGAGTCAGCAGTTGAAATTTTAT---CTGGACAGAGACATA----CAAA-GG---T--CT--ACA-A-TA-T------------G---TAA--A-ACAACATCCACTGAGCTTCGCGAAC--AA--AGCGA------C--ATG-AATT--CAATGCAATTTTGGTAAA-TTCTGCTC-----TGTTT-----AGGCAAA-ATCAC-AGCAACATGTGGTATAATTAACGTTAATTAGTTGATGTGTCCCACCTGA-TTCTGGG-AATTACCCCTCCCACCCCCATTAATCACCGTTATTGACCCTAAAATCCAACATAATCAACATATTTAAAAGTATCAATCGCCATGAGGG
gi|1 : ACATGAGTCGGCA------GCTTTAT---C--TGTAAAG------------G-TT---T--AT--------AA-T------------GTAACAAC-A-ACT--A-CG--TCAGGTTGGCGAGC--GA--AGCGA------T--CGG-AATG--CACTGCGATTTCAGCAAATATATG-----G--TGCTCTATTTAGTCAAA-A-TACAAC-AGTACGTGGCATAATTAACACCAGTCG----ATGTATCCCACCTGATTTCTGGA---ACAATTCTT---------C---TT---TTAATTG--CCGAA--TGCAATG--AACAATACCTCGCAAccatgtgacattatgccatttacta
gi|12 : cACAGGAGTCAGCA------ATTTTAT---C--AATTAAG---TA----GAAA-TG---TTAAT--GAG-A-AA-TGGGGGGGGGGGGGGGGGGG--G-ACTCTA-CCACTGAGCTcgctcgcgaagctcagtggtggttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|19 : ACAGGAGTCGGCA------ATTTTAT---C--AAT------------------TT---T--AT--GAGAA-AA-TGGG---------GGGGGGG--G-GCTCTA-CCA
gi|6 : ATAGGAATTGGCA------GCTTTAT---C----T---G---TA----GAAGGTC---T--AC--------AA-T------------GGG------A-ACA--A-TCACTGACTTTCACGA--------AG-GA------C--AGG-AATA--TA----TATTT-GGCAAA-TTCTGC
gi|9 : actacgaggttggatatttttattgtcgagagatttgaatataatttaacatggtggacaagttcatgatcaggcttgtaccagtccACATGAGTCGGCA------GCTTTAT---C--TGTAAAG---tatg
gi|15 : tttttaatcgagatcgagattcgaaaaaaaaaattcagcatggcggacaagaacatggtcatgttggtgtcgggccCAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----CAAA-TG---T--AT--GAG-A-AA-T------------GGAA-GG--G-ACTCTA-TCACTGAGCTTgtttataatgtaacaacaac
gi|20 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-TG---T--AT--GAG-A-AA-T------------GG
gi|11 : AGGAGTAGGGA------ATTTTAT---C--AATAAAG---TA----GAAA-TA---T--AT--GAG-A-AA-T------------GGGGGGA--A-ATTCTA-CCACTGAGCTTCGCGAGC--GTTCAGCGA------C--AGA-AAaagat
gi|14 : AGGAGTTGGCA------ATTTTAT---C--AATGAAA---TA----AAAA-TA---T--AT--GAA-A-AATT------------GGCATAA--ATAC--TA-CCGGTGAACTTC
gi|2 : GGAGTCGGCA------ATTTTATATCC----TACAT---TA-----AAA-TG---T--AT--GAG-A-AT-G------------GGGGTGA-----CTCTA-CCACTGAGCTTCACGAGC--GT--AGCGAGCGAAGCGAAGG-AATG--CAACGCGATTTTTGCAAA-ATCTGCCA--G--TGCTTTATTAACACAAATA-GACAAC-AGCACGCGGCATAATTAACATCCGACA----ATGTTT-CCACCTGG-TTCTGAACAGATACCCCTC---------TAGATTGCCTTAAATGACACTAA--TCCAA-ACAGGCAACATTTCGCTTTGAATCAAACTCCATGGGGGAgcaa
gi|13 : GAGTCGGCAG-----ATTTTAT---C--AATAAAAAT-TAATATAAAA-TAAAGT--AT--GAG-ATAA-T------------GGAACGGATA-ACTCTA-ACGTTGAGCTTgcgttacgtcacgtcatttactgcggaactatcgaggttgaattattgagggaatttta
gi|18 : agtTCGACA------AT---AT---C--AATAAAG---TA----GAAA-TA---T--AT--GAG---AA-T------------GGGG-AA--A-ACTCTA-CCAATGAGCTTCGCGA
gi|17 : GGCA------ATTTTAT---C--AATAAAG---TA----GAAA-TA---T--ATGGGAG-A-CA-T------------GGGG-GG--A-ACTTAA-CCACTGAGTTTC
gi|21 : ATAAAG---TA----GAAA-TA---T--AT--GAG-A-AA-T------------GGGGGGA--A-ACTCTA-CCACTGAGCTTCg
gi|22 : gTAAAG---TA----GAAA-TA---T--AT--GAG-A-AA-T------------GGGGAGA--A-ACTCTA-CCA
gi|23 : -ACTCTA-CCAATGAGCTTCGCGAGC--GT--AGCAA------c
gi|1 : A-CCACTGAGCTTCGCGAGC--GT--TGCG----------AGGTATTGTTCATTGCA--TTCGGCAAgcga
gi|8 : cacatgagtcggcagctttatctgtaaaggtttataatgtaacaacaactacgtcaggttggcgagcgaagcgatcggaatgcactgcgatttcagcaaatatatggtgctctatttagtcaaaatacaacagtacgtggcataattaacaccagtcgatgtatcccacctgatttctggaacaattcttcttttaaA-CCTCTAAGCTTAGCAAGTGAAT--AG--A------T--AGA-AGTG--AAATGCAATTTTGACAAA-TTCTG--CTGGGATGCTTTG-CAGT-CAAA-A-CAC-AGCAACATGTGGCATGATTATCATCAGTTG----ATGTGCTTCACTTAATTTATGGggttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|5 : taaaaagcaCACTAAATTTCGCAAGC--A---AACCT------T--AGG-AATA--TATAACTATTTCGACTGA-ATCTACTCTGG--TTCTATAT-ATGGTAAA-A-AA--ACCA-CACGGGAC--AATTAACATCAGTTG----AAGTGTCCCACTAGATTCCCGGA---ACCACCCCC---------T---TTTC--TAATTGGCtacccccatcccccccc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CAGTTGATGTGTTCAACATGATTTCTAGAATGATTCCCCATAACCAGTCATAAGTATAACAGCTCGGTACACTCGCTAAGTTAGTGGTTGTTTACATTGTCAAACTGCTGACTTCTCTTCTGAAACAAGGCCTAGCAGATGTGCGTTTAAAGTAATTCTGTGTGAGACATTAAAAT
Unaligned ( gi|10 ): CACTCCAAGATTGGTTATTTTTATTGATGGAGATTCAAAAAAAGTCTAATATGGTGGACAAGTCAGTGTGTCAGACTGTGATCATGGTCTTGTCCACCATAATGGACT
Unaligned ( gi|16 ): ACGCCCACGAAGCTCAGTGGTTGTTATTTACATTGTAGACGTTCATATATTAACCTTTAAACTAGGCC
Alignments
lowQualScore : 111111 111111111111 111 111111111 11 11 1111 22222 55555555555555 11 11 1111 111
lowQualScore : 000000 444 555 777 66666 2 6666 33 33 2 2 777777777777 44444 2 2 111 555555555 77 4 4 1 7 1 1 77 3 6 77 33 3 1 1 4444 3 5 11111 1 99999999999999 3 33 3 33 33 8888 1 1 1 44 777 1 1
lowQualScore : ...... ... ... ... ..... . .... .. .. . . ............ ..... . . ... ......... .. . . . . . . .. . . .. .. . . . .... . . ..... . .............. . .. . .. .. .... . . . .. ... . .
lowQualScore : 333333 777 777 444 77777 5 1111 44 44 5 5 222222222222 33333 2 2 666 777777777 00 0 0 0 9 0 7 22 7 7 77 33 7 7 0 2222 0 0 55555 0 00000000000000 8 88 8 88 88 0000 0 0 0 22 555 0 0
consensus : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-AGATANCCCTC----------TAAATCGCCTTAATTGACCCT--AA--TCCAACACAAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
Reference ( family-3180 ) : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCANTGCGATTTCGGCAAANTCTGCTCTGGTGCTTTATTAAGGCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-AGACANCCCTC----------T-GATTNCCTTAATTGACCCT--AA--TCCAACGCAANCAACATNTCGCAANGNATC---AANCNCCATGGGGGA
gi|1 : ACATGAGTCGGCA------GCTTTAT---C--TGTAAAG------------G-T---TT--AT--------AAT------------GTAACAA--CA----A-CTACGTCAGGTTGGCGAGCGA--AGCGA------T--CGGAATGCACTGCGATTTCAGCAAAT----ATATGGTGCTCTATTTAGTCAAA-A-TACAAC-AGTACGTGGCATAATTAAC----ACCAGTCGATGTATCCCACCTGATTTCTGGA-ACA-ATTCTTC----------T-------TTTAATTG--CCG--AA--TGCAATG--AACAATACCTCGCAACGC-TCGCGAAGCTCAGTGGTGG
gi|11 : cAGGAGTAGGGA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AATTCTA-CCAC-TGAGCTTCGCGAGCGTTCAGCGA------C--AGAAAttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|12 : ACAGGAGTCAGCA------ATTTTAT---C--AATTAAG---TA----GAAA-T---GTTAAT--GAG-A-AATGGGGGGGGGGGGGGGGGGG--GACTCTA-CCAC-TGAGCT
gi|13 : GAGTCGGCAG-----ATTTTAT---C--AATAAAAAT-TAATATAAAA-TAAAGT--AT--GAG-ATAAT------------GGAACGGATAACTCTA-ACGT-TGAGCTT
gi|14 : agtAGGAGTTGGCA------ATTTTAT---C--AATGAAA---TA----AAAA-T---AT--AT--GAA-A-AAT------------TGGCATA--AATACTA-CCGG-TGAACTTCGCAA
gi|15 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----CAAA-T---GT--AT--GAG-A-AAT-------------GGAAGG--GACTCTA-TCAC-TGAGCTT
gi|16 : A-CCAC-TGAGCTTCGTGGGCGT--
gi|17 : GGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--ATGGGAG-A-CAT------------GGGGGG---AACTTAA-CCAC-TGAGTTTCGtgttatttacattgtagacgttcatatattaacctttaaactaggcc
gi|18 : TCGACA------AT---AT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG---AAT------------GGGGA-A--AACTCTA-CCAA-TGAGCTTCGCGA
gi|19 : ACAGGAGTCGGCA------ATTTTAT---C--AAT------------------T---TT--AT--GAGAA-AATGGG---------GGGGGGG--GGCTCTA-CCA
gi|2 : GGAGTCGGCA------ATTTTATATCC----TACAT---TA-----AAA-T---GT--AT--GAG-A-ATG------------GGGGTGA----CTCTA-CCAC-TGAGCTTCACGAGCGT--AGCGAGCGAAGCGAAGGAATGCAACGCGATTTTTGCAAAATCTGCC--AGTGCTTTATTAACACAAATA-GACAA-CAGCACGCGGCATAATTAAC----ATCCGACAATGT-TTCCACCTGG-TTCTGAACAGATACCCCTC----------TAGATTGCCTTAAATGACACT--AA--TCCAA-ACAGGCAACATTTCGCTTTGAATC---AAACTCCATGGGGGA
gi|20 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGgcgttacgtcacgtcatttactgcggaactatcgaggttgaattattgagggaatttta
gi|21 : ATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AACTCTA-CCAC-TGAGCTTCaagat
gi|22 : gTAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGAGA--AACTCTA-CCAC-
gi|23 : ACTCTA-CCAA-TGAGCTTCGCGAGCGT--AGCAA------
gi|3 : ACAGGAGTCAGCAGTTGAAATTTTAT---CTGGACAGAGACATA----CAAA-G---GT--CT--ACA-A-TAT------------G---TAA--AACAACATCCAC-TGAGCTTCGCGAACAA--AGCGA------C--ATGAATTCAATGCAATTTTGGTAAATTCTGCTCTG----TTT----AGGCAAA-ATCACAG-CAACATGTGGTATAATTAACGTTAATTAGTTGATGTGTCCCACCTGA-TTCTGGG-AATTACCCCTCCCACCCCCATT-AATCACCGTTATTGACCCTAAAA--TCCAACATAATCAACATATTTAAAAGTATC---AATCGCCATGAGGGgcga
gi|4 : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGTGA--AACTTTA-CCAT-TGAGCTTCTCGAGCAT--AGCGA------C--AGGAATGCAACGCAATTTCGGCAAAATCTGCCCTCGTGCTTTATCAACACAAA-A-GACGACCAGTACGTGGCCTAATTAAC----ATCAAACAATGTTTCCCACCTGATTTCTGGACAGATAACCCTC----------TAAATTGCCTTAATTGACCCT--AAATTCCAACACCAGCAACATTTCGCAAAGAATC---AAAACCCATGGGGGAccatgtgacattatgccatttacta
gi|5 : CAC-TAAATTTCGCAAGCA---AACCT------T--AGGAATATATAACTATTTCGACTGAATCTACTCTGGTTCTATAT-ATGGTAAA-A-AA--ACCA-CACG-GG-ACAATTAAC----ATCAGTTGAAGTGTCCCACTAGATTCCCGGA---ACCACCCCC----------T---TTTC--TAATTGGC
gi|6 : gcatttttatctgttaaagtcaacaactatgaatataatatacagtATAGGAATTGGCA------GCTTTAT---C----T---G---TA----GAAGGT---CT--AC--------AAT------------GGG------AACA--A-TCAC-TGACTTTCACGA------AG-GA------C--AGGAATATAT----ATTT-GGCAAATTCTGCTATGaaagc
gi|7 : actacgaggttggatatttttattgtcgagagatttgaatataatttaacatggtggacaagttcatgatcaggcttgtaccagtccCAGTTGATGTGTTCAACATGATTTCTAGA-A
gi|8 : A-CCTC-TAAGCTTAGCAAGTGA--ATAGA------T--AGAAGTGAAATGCAATTTTGACAAATTCTGCTGGGATGCTTTGC--AGTCAAA-A-CACAGC-AACATGTGGCATGATTATC----ATCAGTTGATGTGCTTCACTTAATTTATGGtgattccccataaccagtcataagtataacagctcggtacactcgctaagttagtggttgtttacattgtcaaactgctgacttctcttctgaaacaaggcctagcagatgtgcgtttaaagtaattctgtgtgagacattaaaat
gi|9 : taaaaagcaACATGAGTCGGCA------GCTTTAT---C--TGTAAAG---tacccccatcccccccc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CACTCCAAGATTGGTTATTTTTATTGATGGAGATTCAAAAAAAGTCTAATATGGTGGACAAGTCAGTGTGTCAGACTGTGATCATGGTCTTGTCCACCATAATGGACT
Alignments
lowQualScore : 111111 111111111111 111 111111111 11 11 1111 11111 444444444444 11 11 11 111
lowQualScore : 000000 444 555 777 66666 2 6666 33 33 2 2 777777777777 44444 2 2 111 555555555 99 4 4 1 22 1 1 77 1 6 77 33 3 1 1 4444 3 0 22222 1 111111111111 44 3 33 33 22 0 0 1 1 44 777 1 0
lowQualScore : ...... ... ... ... ..... . .... .. .. . . ............ ..... . . ... ......... .. . . . .. . . .. . . .. .. . . . .... . . ..... . ............ .. . .. .. .. . . . . .. ... . .
lowQualScore : 333333 777 777 444 77777 5 1111 44 44 5 5 222222222222 33333 2 2 666 777777777 11 0 0 0 44 0 7 22 0 7 77 33 7 7 0 2222 0 1 77777 0 555555555555 55 2 88 88 00 8 2 2 0 22 555 2 8
consensus : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATACCCCTC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
Reference ( family-3180 ) : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATANCCCTC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACAAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
gi|1 : ACATGAGTCGGCA------GCTTTAT---C--TGTAAAG------------G-T---TT--AT--------AAT------------GTAACAA--CA----A-CTACGTCAGGTTGGCGAGCGA--AGCGA------T--CGGAATGCACTGCGATTTCAGCAAAT----ATATGGTGCTCTATTTAGTCAAA-A-TACAAC-AGTACGTGGCATAATTAAC----ACCAGTCGATGTATCCCACCTGATTTCTGGA-A-CA-ATTCTTC---------T-------TTTAATTG--CCG--AA--TGCA--ATGAACAATACCTCGCAACGC-TCGCGAAGCTCAGTGGTGG
gi|11 : cAGGAGTAGGGA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AATTCTA-CCAC-TGAGCTTCGCGAGCGTTCAGCGA------C--AGAAAttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|12 : ACAGGAGTCAGCA------ATTTTAT---C--AATTAAG---TA----GAAA-T---GTTAAT--GAG-A-AATGGGGGGGGGGGGGGGGGGG--GACTCTA-CCAC-TGAGCT
gi|13 : GAGTCGGCAG-----ATTTTAT---C--AATAAAAAT-TAATATAAAA-TAAAGT--AT--GAG-ATAAT------------GGAACGGATAACTCTA-ACGT-TGAGCTT
gi|14 : agtAGGAGTTGGCA------ATTTTAT---C--AATGAAA---TA----AAAA-T---AT--AT--GAA-A-AAT------------TGGCATA--AATACTA-CCGG-TGAACTTCGCAA
gi|15 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----CAAA-T---GT--AT--GAG-A-AAT-------------GGAAGG--GACTCTA-TCAC-TGAGCTT
gi|16 : A-CCAC-TGAGCTTCGTGGGCGT--
gi|17 : GGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--ATGGGAG-A-CAT------------GGGGGG---AACTTAA-CCAC-TGAGTTTCGtgttatttacattgtagacgttcatatattaacctttaaactaggcc
gi|18 : TCGACA------AT---AT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG---AAT------------GGGGA-A--AACTCTA-CCAA-TGAGCTTCGCGA
gi|19 : ACAGGAGTCGGCA------ATTTTAT---C--AAT------------------T---TT--AT--GAGAA-AATGGG---------GGGGGGG--GGCTCTA-CCA
gi|2 : GGAGTCGGCA------ATTTTATATCC----TACAT---TA-----AAA-T---GT--AT--GAG-A-ATG------------GGGGTGA----CTCTA-CCAC-TGAGCTTCACGAGCGT--AGCGAGCGAAGCGAAGGAATGCAACGCGATTTTTGCAAAATCTGCCA--GTGCTTTATTAACACAAATA-GACAAC-AGCACGCGGCATAATTAAC----ATCCGACAATGT-TTCCACCTGGTT-CTGAACA-GATACCCCTC---------TAGATTGCCTTAAATGACACT--AA--TCCAA-ACAGGCAACATTTCGCTTTGAATC---AAACTCCATGGGGGA
gi|20 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGgcgttacgtcacgtcatttactgcggaactatcgaggttgaattattgagggaatttta
gi|21 : ATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AACTCTA-CCAC-TGAGCTTCaagat
gi|22 : gTAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGAGA--AACTCTA-CCAC-
gi|23 : ACTCTA-CCAA-TGAGCTTCGCGAGCGT--AGCAA------
gi|3 : ACAGGAGTCAGCAGTTGAAATTTTAT---CTGGACAGAGACATA----CAAA-G---GT--CT--ACA-A-TAT------------G---TAA--AACAACATCCAC-TGAGCTTCGCGAACAA--AGCGA------C--ATGAATTCAATGCAATTTTGGTAAATTCTGCTCTG----TTT----AGGCAAA-ATCACAG-CAACATGTGGTATAATTAACGTTAATTAGTTGATGTGTCCCACCTGA-TTCTGGG-A-ATTACCCCTCCCACCCCCATTAATCACCGTTATTGACCCTAAAA--TCCAACATAATCAACATATTTAAAAGTATC---AATCGCCATGAGGGgcga
gi|4 : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGTGA--AACTTTA-CCAT-TGAGCTTCTCGAGCAT--AGCGA------C--AGGAATGCAACGCAATTTCGGCAAAATCTGCCCTCGTGCTTTATCAACACAAA-A-GACGACCAGTACGTGGCCTAATTAAC----ATCAAACAATGTTTCCCACCTGATTTCTGGACA-GATAACCCTC---------TAAATTGCCTTAATTGACCCT--AAATTCCAACACCAGCAACATTTCGCAAAGAATC---AAAACCCATGGGGGAccatgtgacattatgccatttacta
gi|5 : CAC-TAAATTTCGCAAGCA---AACCT------T--AGGAATATATAACTATTTCGACTGAATCTACTCTGGTTCTATAT-ATGGTAAA-A-AA--ACCA-CACG-GG-ACAATTAAC----ATCAGTTGAAGTGTCCCACTAGATTCCCGGA-A-
gi|6 : gcatttttatctgttaaagtcaacaactatgaatataatatacagtATAGGAATTGGCA------GCTTTAT---C----T---G---TA----GAAGGT---CT--AC--------AAT------------GGG------AACA--A-TCAC-TGACTTTCACGA------AG-GA------C--AGGAATATA----TATTT-GGCAAATTCTGCTATGccacccccttttctaattggcaaagc
gi|7 : actacgaggttggatatttttattgtcgagagatttgaatataatttaacatggtggacaagttcatgatcaggcttgtaccagtccCAGTTGATGTGTTCAACATGATTTCTAGA-ATGATTCCCC
gi|8 : A-CCTC-TAAGCTTAGCAAGTGA--ATAGA------T--AGAAGTGAAATGCAATTTTGACAAATTCTGCTGGGATGCTTTGC--AGTCAAA-A-CACAG-CAACATGTGGCATGATTATC----ATCAGTTGATGTGCTTCACTTAATTTATGG------TACCCCataaccagtcataagtataacagctcggtacactcgctaagttagtggttgtttacattgtcaaactgctgacttctcttctgaaacaaggcctagcagatgtgcgtttaaagtaattctgtgtgagacattaaaat
gi|9 : taaaaagcaACATGAGTCGGCA------GCTTTAT---C--TGTAAAG---catcccccccc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CACTCCAAGATTGGTTATTTTTATTGATGGAGATTCAAAAAAAGTCTAATATGGTGGACAAGTCAGTGTGTCAGACTGTGATCATGGTCTTGTCCACCATAATGGACT
Alignments
lowQualScore : 111111 111111111111 111 111111111 11 11 1111 2222222 1111 333333333 11 11 11 111
lowQualScore : 000000 444 555 777 66666 2 6666 33 33 2 2 777777777777 44444 2 2 111 555555555 99 4 4 1 22 1 1 77 1 6 77 33 3 1 1 4444 3 0 0000000 2222 222222222 6 44 3 33 33 22 4 0 1 1 44 777 1 0
lowQualScore : ...... ... ... ... ..... . .... .. .. . . ............ ..... . . ... ......... .. . . . .. . . .. . . .. .. . . . .... . . ....... .... ......... . .. . .. .. .. . . . . .. ... . .
lowQualScore : 333333 777 777 444 77777 5 1111 44 44 5 5 222222222222 33333 2 2 666 777777777 11 0 0 0 44 0 7 22 0 7 77 33 7 7 0 2222 0 1 0000000 1111 000000000 0 55 2 88 88 00 2 2 2 0 22 555 2 8
consensus : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATACCCC----TC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
Reference ( family-3180 ) : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATACCCC----TC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
gi|1 : ACATGAGTCGGCA------GCTTTAT---C--TGTAAAG------------G-T---TT--AT--------AAT------------GTAACAA--CA----A-CTACGTCAGGTTGGCGAGCGA--AGCGA------T--CGGAATGCACTGCGATTTCAGCAAAT----ATATGGTGCTCTATTTAGTCAAA-A-TACAAC-AGTACGTGGCATAATTAAC----ACCAGTCGATGTATCCCACCTGATTTCTGGA-A-CA-ATTCT----TC---------T-------TTTAATTG--CCG--AA--TGCA--ATGAACAATACCTCGCAACGC-TCGCGAAGCTCAGTGGTGG
gi|11 : cAGGAGTAGGGA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AATTCTA-CCAC-TGAGCTTCGCGAGCGTTCAGCGA------C--AGAAAttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|12 : ACAGGAGTCAGCA------ATTTTAT---C--AATTAAG---TA----GAAA-T---GTTAAT--GAG-A-AATGGGGGGGGGGGGGGGGGGG--GACTCTA-CCAC-TGAGCT
gi|13 : GAGTCGGCAG-----ATTTTAT---C--AATAAAAAT-TAATATAAAA-TAAAGT--AT--GAG-ATAAT------------GGAACGGATAACTCTA-ACGT-TGAGCTT
gi|14 : agtAGGAGTTGGCA------ATTTTAT---C--AATGAAA---TA----AAAA-T---AT--AT--GAA-A-AAT------------TGGCATA--AATACTA-CCGG-TGAACTTCGCAA
gi|15 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----CAAA-T---GT--AT--GAG-A-AAT-------------GGAAGG--GACTCTA-TCAC-TGAGCTT
gi|16 : A-CCAC-TGAGCTTCGTGGGCGT--
gi|17 : GGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--ATGGGAG-A-CAT------------GGGGGG---AACTTAA-CCAC-TGAGTTTCGtgttatttacattgtagacgttcatatattaacctttaaactaggcc
gi|18 : TCGACA------AT---AT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG---AAT------------GGGGA-A--AACTCTA-CCAA-TGAGCTTCGCGA
gi|19 : ACAGGAGTCGGCA------ATTTTAT---C--AAT------------------T---TT--AT--GAGAA-AATGGG---------GGGGGGG--GGCTCTA-CCA
gi|2 : GGAGTCGGCA------ATTTTATATCC----TACAT---TA-----AAA-T---GT--AT--GAG-A-ATG------------GGGGTGA----CTCTA-CCAC-TGAGCTTCACGAGCGT--AGCGAGCGAAGCGAAGGAATGCAACGCGATTTTTGCAAAATCTGCCA--GTGCTTTATTAACACAAATA-GACAAC-AGCACGCGGCATAATTAAC----ATCCGACAATGT-TTCCACCTGGTT-CTGAACA-GATACCCC----TC---------TAGATTGCCTTAAATGACACT--AA--TCCAA-ACAGGCAACATTTCGCTTTGAATC---AAACTCCATGGGGGA
gi|20 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGgcgttacgtcacgtcatttactgcggaactatcgaggttgaattattgagggaatttta
gi|21 : ATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AACTCTA-CCAC-TGAGCTTCaagat
gi|22 : gTAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGAGA--AACTCTA-CCAC-
gi|23 : ACTCTA-CCAA-TGAGCTTCGCGAGCGT--AGCAA------
gi|3 : ACAGGAGTCAGCAGTTGAAATTTTAT---CTGGACAGAGACATA----CAAA-G---GT--CT--ACA-A-TAT------------G---TAA--AACAACATCCAC-TGAGCTTCGCGAACAA--AGCGA------C--ATGAATTCAATGCAATTTTGGTAAATTCTGCTCTG----TTT----AGGCAAA-ATCACAG-CAACATGTGGTATAATTAACGTTAATTAGTTGATGTGTCCCACCTGA-TTCTGGG-A-ATTACCCC----TCCCACCCCCATTAATCACCGTTATTGACCCTAAAA--TCCAACATAATCAACATATTTAAAAGTATC---AATCGCCATGAGGGgcga
gi|4 : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGTGA--AACTTTA-CCAT-TGAGCTTCTCGAGCAT--AGCGA------C--AGGAATGCAACGCAATTTCGGCAAAATCTGCCCTCGTGCTTTATCAACACAAA-A-GACGACCAGTACGTGGCCTAATTAAC----ATCAAACAATGTTTCCCACCTGATTTCTGGACA-GATAACCC----TC---------TAAATTGCCTTAATTGACCCT--AAATTCCAACACCAGCAACATTTCGCAAAGAATC---AAAACCCATGGGGGAccatgtgacattatgccatttacta
gi|5 : CAC-TAAATTTCGCAAGCA---AACCT------T--AGGAATATATAACTATTTCGACTGAATCTACTCTGGTTCTATAT-ATGGTAAA-A-AA--ACCA-CACG-GG-ACAATTAAC----ATCAGTTGAAGTGTCCCACTAGATTCCCGGA-A--CCACCCCCTTTTC---------TAA
gi|6 : gcatttttatctgttaaagtcaacaactatgaatataatatacagtATAGGAATTGGCA------GCTTTAT---C----T---G---TA----GAAGGT---CT--AC--------AAT------------GGG------AACA--A-TCAC-TGACTTTCACGA------AG-GA------C--AGGAATATA----TATTT-GGCAAATTCTGCTATGttggcaaagc
gi|7 : actacgaggttggatatttttattgtcgagagatttgaatataatttaacatggtggacaagttcatgatcaggcttgtaccagtccCAGTTGATGTGTTCAACATGATTTCTAGA-ATGATTCCCC----
gi|8 : A-CCTC-TAAGCTTAGCAAGTGA--ATAGA------T--AGAAGTGAAATGCAATTTTGACAAATTCTGCTGGGATGCTTTGC--AGTCAAA-A-CACAG-CAACATGTGGCATGATTATC----ATCAGTTGATGTGCTTCACTTAATTTATGG------TACCCC----ataaccagtcataagtataacagctcggtacactcgctaagttagtggttgtttacattgtcaaactgctgacttctcttctgaaacaaggcctagcagatgtgcgtttaaagtaattctgtgtgagacattaaaat
gi|9 : taaaaagcaACATGAGTCGGCA------GCTTTAT---C--TGTAAAG---catcccccccc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CACTCCAAGATTGGTTATTTTTATTGATGGAGATTCAAAAAAAGTCTAATATGGTGGACAAGTCAGTGTGTCAGACTGTGATCATGGTCTTGTCCACCATAATGGACT
Alignments
lowQualScore : 111111 111111111111 111 111111111 11 11 1111 2222222 1111 333333333 11 11 11 111
lowQualScore : 000000 444 555 777 66666 2 6666 33 33 2 2 777777777777 44444 2 2 111 555555555 99 4 4 1 22 1 1 77 1 6 77 33 3 1 1 4444 3 0 0000000 2222 222222222 6 44 3 33 33 22 4 0 1 1 44 777 1 0
lowQualScore : ...... ... ... ... ..... . .... .. .. . . ............ ..... . . ... ......... .. . . . .. . . .. . . .. .. . . . .... . . ....... .... ......... . .. . .. .. .. . . . . .. ... . .
lowQualScore : 333333 777 777 444 77777 5 1111 44 44 5 5 222222222222 33333 2 2 666 777777777 11 0 0 0 44 0 7 22 0 7 77 33 7 7 0 2222 0 1 0000000 1111 000000000 0 55 2 88 88 00 2 2 2 0 22 555 2 8
consensus : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATACCCC----TC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
Reference ( family-3180 ) : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATACCCC----TC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
gi|1 : ACATGAGTCGGCA------GCTTTAT---C--TGTAAAG------------G-T---TT--AT--------AAT------------GTAACAA--CA----A-CTACGTCAGGTTGGCGAGCGA--AGCGA------T--CGGAATGCACTGCGATTTCAGCAAAT----ATATGGTGCTCTATTTAGTCAAA-A-TACAAC-AGTACGTGGCATAATTAAC----ACCAGTCGATGTATCCCACCTGATTTCTGGA-A-CA-ATTCT----TC---------T-------TTTAATTG--CCG--AA--TGCA--ATGAACAATACCTCGCAACGC-TCGCGAAGCTCAGTGGTGG
gi|11 : cAGGAGTAGGGA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AATTCTA-CCAC-TGAGCTTCGCGAGCGTTCAGCGA------C--AGAAAttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|12 : ACAGGAGTCAGCA------ATTTTAT---C--AATTAAG---TA----GAAA-T---GTTAAT--GAG-A-AATGGGGGGGGGGGGGGGGGGG--GACTCTA-CCAC-TGAGCT
gi|13 : GAGTCGGCAG-----ATTTTAT---C--AATAAAAAT-TAATATAAAA-TAAAGT--AT--GAG-ATAAT------------GGAACGGATAACTCTA-ACGT-TGAGCTT
gi|14 : agtAGGAGTTGGCA------ATTTTAT---C--AATGAAA---TA----AAAA-T---AT--AT--GAA-A-AAT------------TGGCATA--AATACTA-CCGG-TGAACTTCGCAA
gi|15 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----CAAA-T---GT--AT--GAG-A-AAT-------------GGAAGG--GACTCTA-TCAC-TGAGCTT
gi|16 : A-CCAC-TGAGCTTCGTGGGCGT--
gi|17 : GGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--ATGGGAG-A-CAT------------GGGGGG---AACTTAA-CCAC-TGAGTTTCGtgttatttacattgtagacgttcatatattaacctttaaactaggcc
gi|18 : TCGACA------AT---AT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG---AAT------------GGGGA-A--AACTCTA-CCAA-TGAGCTTCGCGA
gi|19 : ACAGGAGTCGGCA------ATTTTAT---C--AAT------------------T---TT--AT--GAGAA-AATGGG---------GGGGGGG--GGCTCTA-CCA
gi|2 : GGAGTCGGCA------ATTTTATATCC----TACAT---TA-----AAA-T---GT--AT--GAG-A-ATG------------GGGGTGA----CTCTA-CCAC-TGAGCTTCACGAGCGT--AGCGAGCGAAGCGAAGGAATGCAACGCGATTTTTGCAAAATCTGCCA--GTGCTTTATTAACACAAATA-GACAAC-AGCACGCGGCATAATTAAC----ATCCGACAATGT-TTCCACCTGGTT-CTGAACA-GATACCCC----TC---------TAGATTGCCTTAAATGACACT--AA--TCCAA-ACAGGCAACATTTCGCTTTGAATC---AAACTCCATGGGGGA
gi|20 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGgcgttacgtcacgtcatttactgcggaactatcgaggttgaattattgagggaatttta
gi|21 : ATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AACTCTA-CCAC-TGAGCTTCaagat
gi|22 : gTAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGAGA--AACTCTA-CCAC-
gi|23 : ACTCTA-CCAA-TGAGCTTCGCGAGCGT--AGCAA------
gi|3 : ACAGGAGTCAGCAGTTGAAATTTTAT---CTGGACAGAGACATA----CAAA-G---GT--CT--ACA-A-TAT------------G---TAA--AACAACATCCAC-TGAGCTTCGCGAACAA--AGCGA------C--ATGAATTCAATGCAATTTTGGTAAATTCTGCTCTG----TTT----AGGCAAA-ATCACAG-CAACATGTGGTATAATTAACGTTAATTAGTTGATGTGTCCCACCTGA-TTCTGGG-A-ATTACCCC----TCCCACCCCCATTAATCACCGTTATTGACCCTAAAA--TCCAACATAATCAACATATTTAAAAGTATC---AATCGCCATGAGGGgcga
gi|4 : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGTGA--AACTTTA-CCAT-TGAGCTTCTCGAGCAT--AGCGA------C--AGGAATGCAACGCAATTTCGGCAAAATCTGCCCTCGTGCTTTATCAACACAAA-A-GACGACCAGTACGTGGCCTAATTAAC----ATCAAACAATGTTTCCCACCTGATTTCTGGACA-GATAACCC----TC---------TAAATTGCCTTAATTGACCCT--AAATTCCAACACCAGCAACATTTCGCAAAGAATC---AAAACCCATGGGGGAccatgtgacattatgccatttacta
gi|5 : CAC-TAAATTTCGCAAGCA---AACCT------T--AGGAATATATAACTATTTCGACTGAATCTACTCTGGTTCTATAT-ATGGTAAA-A-AA--ACCA-CACG-GG-ACAATTAAC----ATCAGTTGAAGTGTCCCACTAGATTCCCGGA-A--CCACCCCCTTTTC---------TAA
gi|6 : gcatttttatctgttaaagtcaacaactatgaatataatatacagtATAGGAATTGGCA------GCTTTAT---C----T---G---TA----GAAGGT---CT--AC--------AAT------------GGG------AACA--A-TCAC-TGACTTTCACGA------AG-GA------C--AGGAATATA----TATTT-GGCAAATTCTGCTATGttggcaaagc
gi|7 : actacgaggttggatatttttattgtcgagagatttgaatataatttaacatggtggacaagttcatgatcaggcttgtaccagtccCAGTTGATGTGTTCAACATGATTTCTAGA-ATGATTCCCC----
gi|8 : A-CCTC-TAAGCTTAGCAAGTGA--ATAGA------T--AGAAGTGAAATGCAATTTTGACAAATTCTGCTGGGATGCTTTGC--AGTCAAA-A-CACAG-CAACATGTGGCATGATTATC----ATCAGTTGATGTGCTTCACTTAATTTATGG------TACCCC----ataaccagtcataagtataacagctcggtacactcgctaagttagtggttgtttacattgtcaaactgctgacttctcttctgaaacaaggcctagcagatgtgcgtttaaagtaattctgtgtgagacattaaaat
gi|9 : taaaaagcaACATGAGTCGGCA------GCTTTAT---C--TGTAAAG---catcccccccc
blockSeqs : GTTGAA ATC TGG ACA ATATA G AAAG TA GG A T GGGGGGGGGGGG CGGAT T . TTC GCGAAGCGA AC G T A CT G A TA A T TC CC G C C GTTA G ACAGAT CTTT CCACCCCCA A TG A AA AT AC A T T AA . A
blockSeqs : G . A AT G . A . . . . GGG GGA . . T C AT A T T CT G A CA G . G CC A T T . T ACAGAT . . T CA A . . AC A A A TA . T
blockSeqs : . . A . G . G . . . . . GGG . . T C AC A C A CT G A A A . G C G T C . G AATGAT . . A TG A . . A C T A AA . A
blockSeqs : . . A . A . A . . . . . ATA . . T C TA T C A AT A G . G . A C A T C . G GAATT . . A
blockSeqs : . . A . C . G . . . . . AGG . . A T AT T T T GG . . . T . C C . . . . G AACC .
blockSeqs : . . A . G . A . . . . . GGG . . T C . A . T A . T .
blockSeqs : . . A . G . A . . . . . TGA . . A T
blockSeqs : . . A . G . T . . . . . GGA . . .
blockSeqs : . . A . G . G . . . . . AGA . . .
blockSeqs : . . A . G . G . . . . . TAA . .
blockSeqs : . . A . C . A . . . . . TGA . .
blockSeqs : . . T . G . A . . . . . GG . .
blockSeqs : . . . . G . G . . . . . AA . .
blockSeqs : . . . . . . A . . . . . . . .
blockSeqs : . . . C . . . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : G**** A* ACAGAT*
originalCons : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATTAAGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGA-A-GATACCCC----TC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
finalCons : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TAG----AAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTATA-AGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGGACAGAT-ACCCC----TC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CACTCCAAGATTGGTTATTTTTATTGATGGAGATTCAAAAAAAGTCTAATATGGTGGACAAGTCAGTGTGTCAGACTGTGATCATGGTCTTGTCCACCATAATGGACT
Alignments
lowQualScore : 111111 111111111111 111 111111111 222 11 1111 222222 444444444444 11 11 11 111
lowQualScore : 000000 444 555 777 66666 2 6666 33 33 2 2 777777777777 44444 2 2 111 555555555 99 4 4 1 22 1 1 777 1 6 77 33 3 1 1 4444 3 0 000000 111111111111 44 3 33 33 22 4 0 1 1 44 777 1 0
lowQualScore : ...... ... ... ... ..... . .... .. .. . . ............ ..... . . ... ......... .. . . . .. . . ... . . .. .. . . . .... . . ...... ............ .. . .. .. .. . . . . .. ... . .
lowQualScore : 333333 777 777 444 77777 5 1111 44 44 5 5 222222222222 33333 2 2 666 777777777 11 0 0 0 44 0 7 555 0 7 77 33 7 7 0 2222 0 1 444444 555555555555 55 2 88 88 00 2 2 2 0 22 555 2 8
consensus : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTAT-A-AGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGG-ACAGATACCCCTC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
Reference ( family-3180 ) : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGGGNGA--AACTCTA-CCAC-TGAGCTTCGCGAGCGT--AGCGA------C--AGGAATGCAACGCGATTTCGGCAAANTCTGCTNTGGTGCTTTAT-A-AGNCAAA-A-NACAACCAGCACGTGGCATAATTAAC----ATCAGTCGATGTGTCCCACCTGATTTCTGG-ACAGATACCCCTC---------TAAATCGCCTTAATTGACCCT--AA--TCCAACACGAGCAACATTTCGCAANGNATC---AAACTCCATGGGGGA
gi|1 : ACATGAGTCGGCA------GCTTTAT---C--TGTAAAG------------G-T---TT--AT--------AAT------------GTAACAA--CA----A-CTACGTCAGGTTGGCGAGCGA--AGCGA------T--CGGAATGCACTGCGATTTCAGCAAAT----ATATGGTGCTCTAT-TTAGTCAAA-A-TACAAC-AGTACGTGGCATAATTAAC----ACCAGTCGATGTATCCCACCTGATTTCTGGAACA---ATTCTTC---------T-------TTTAATTG--CCG--AA--TGCA--ATGAACAATACCTCGCAACGC-TCGCGAAGCTCAGTGGTGG
gi|11 : cAGGAGTAGGGA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AATTCTA-CCAC-TGAGCTTCGCGAGCGTTCAGCGA------C--AGAAAttgtttacattgtagactttgagttgccaactcctcaaaactaggcttagccgatgtaagttcaacgttttcacgaatctgtctgacattcaaat
gi|12 : ACAGGAGTCAGCA------ATTTTAT---C--AATTAAG---TA----GAAA-T---GTTAAT--GAG-A-AATGGGGGGGGGGGGGGGGGGG--GACTCTA-CCAC-TGAGCT
gi|13 : GAGTCGGCAG-----ATTTTAT---C--AATAAAAAT-TAATATAAAA-TAAAGT--AT--GAG-ATAAT------------GGAACGGATAACTCTA-ACGT-TGAGCTT
gi|14 : agtAGGAGTTGGCA------ATTTTAT---C--AATGAAA---TA----AAAA-T---AT--AT--GAA-A-AAT------------TGGCATA--AATACTA-CCGG-TGAACTTCGCAA
gi|15 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----CAAA-T---GT--AT--GAG-A-AAT-------------GGAAGG--GACTCTA-TCAC-TGAGCTT
gi|16 : A-CCAC-TGAGCTTCGTGGGCGT--
gi|17 : GGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--ATGGGAG-A-CAT------------GGGGGG---AACTTAA-CCAC-TGAGTTTCGtgttatttacattgtagacgttcatatattaacctttaaactaggcc
gi|18 : TCGACA------AT---AT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG---AAT------------GGGGA-A--AACTCTA-CCAA-TGAGCTTCGCGA
gi|19 : ACAGGAGTCGGCA------ATTTTAT---C--AAT------------------T---TT--AT--GAGAA-AATGGG---------GGGGGGG--GGCTCTA-CCA
gi|2 : GGAGTCGGCA------ATTTTATATCC----TACAT---TA-----AAA-T---GT--AT--GAG-A-ATG------------GGGGTGA----CTCTA-CCAC-TGAGCTTCACGAGCGT--AGCGAGCGAAGCGAAGGAATGCAACGCGATTTTTGCAAAATCTGCCA--GTGCTTTATTA-ACACAAATA-GACAAC-AGCACGCGGCATAATTAAC----ATCCGACAATGT-TTCCACCTGGTT-CTGA-ACAGATACCCCTC---------TAGATTGCCTTAAATGACACT--AA--TCCAA-ACAGGCAACATTTCGCTTTGAATC---AAACTCCATGGGGGA
gi|20 : CAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---GT--AT--GAG-A-AAT------------GGgcgttacgtcacgtcatttactgcggaactatcgaggttgaattattgagggaatttta
gi|21 : ATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGGGA--AACTCTA-CCAC-TGAGCTTCaagat
gi|22 : gTAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGAGA--AACTCTA-CCAC-
gi|23 : ACTCTA-CCAA-TGAGCTTCGCGAGCGT--AGCAA------
gi|3 : ACAGGAGTCAGCAGTTGAAATTTTAT---CTGGACAGAGACATA----CAAA-G---GT--CT--ACA-A-TAT------------G---TAA--AACAACATCCAC-TGAGCTTCGCGAACAA--AGCGA------C--ATGAATTCAATGCAATTTTGGTAAATTCTGCTCTG----TTT-----AGGCAAA-ATCACAG-CAACATGTGGTATAATTAACGTTAATTAGTTGATGTGTCCCACCTGA-TTCTGG-G-AATTACCCCTCCCACCCCCATTAATCACCGTTATTGACCCTAAAA--TCCAACATAATCAACATATTTAAAAGTATC---AATCGCCATGAGGGgcga
gi|4 : ACAGGAGTCGGCA------ATTTTAT---C--AATAAAG---TA----GAAA-T---AT--AT--GAG-A-AAT------------GGGGTGA--AACTTTA-CCAT-TGAGCTTCTCGAGCAT--AGCGA------C--AGGAATGCAACGCAATTTCGGCAAAATCTGCCCTCGTGCTTTATCA-ACACAAA-A-GACGACCAGTACGTGGCCTAATTAAC----ATCAAACAATGTTTCCCACCTGATTTCTGG-ACAGATAACCCTC---------TAAATTGCCTTAATTGACCCT--AAATTCCAACACCAGCAACATTTCGCAAAGAATC---AAAACCCATGGGGGAccatgtgacattatgccatttacta
gi|5 : CAC-TAAATTTCGCAAGCA---AACCT------T--AGGAATATATAACTATTTCGACTGAATCTACTCTGGTTCTATAT-A-TGGTAAA-A-AA--ACCA-CACG-GG-ACAATTAAC----ATCAGTTGAAGTGTCCCACTAGATTCCCGG-A
gi|6 : gcatttttatctgttaaagtcaacaactatgaatataatatacagtATAGGAATTGGCA------GCTTTAT---C----T---G---TA----GAAGGT---CT--AC--------AAT------------GGG------AACA--A-TCAC-TGACTTTCACGA------AG-GA------C--AGGAATATA----TATTT-GGCAAATTCTGCTATGaccacccccttttctaattggcaaagc
gi|7 : actacgaggttggatatttttattgtcgagagatttgaatataatttaacatggtggacaagttcatgatcaggcttgtaccagtccCAGTTGATGTGTTCAACATGATTTCTAG-AATGATTCCCC
gi|8 : A-CCTC-TAAGCTTAGCAAGTGA--ATAGA------T--AGAAGTGAAATGCAATTTTGACAAATTCTGCTGGGATGCTTTGC---AGTCAAA-A-CACAG-CAACATGTGGCATGATTATC----ATCAGTTGATGTGCTTCACTTAATTTATGG------TACCCCataaccagtcataagtataacagctcggtacactcgctaagttagtggttgtttacattgtcaaactgctgacttctcttctgaaacaaggcctagcagatgtgcgtttaaagtaattctgtgtgagacattaaaat
gi|9 : taaaaagcaACATGAGTCGGCA------GCTTTAT---C--TGTAAAG---catcccccccc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CACTCCAAGATTGGTTATTTTTATTGATGGAGATTCAAAAAAAGTCTAATATGGTGGACAAGTCAGTGTGTCAGACTGTGATCATGGTCTTGTCCACCATAATGGACT