lowQualScore : 111 1 11 1 111111 555555555555555 11111 222222222 11 11111 111
lowQualScore : 4 44 0 000 0 55 6 4 111111 3 1 88888 88 111111111111111 99 6 44444 3 7777 3 444444444 2 999 3 4 2 888 0 3 3 1 66 00000 3 6 8 777 2 66666 33 222 888 2 2 33
lowQualScore : . .. . ... . .. . . ...... . . ..... .. ............... .. . ..... . .... . ......... . ... . . . ... . . . . .. ..... . . . ... . ..... .. ... ... . . ..
lowQualScore : 0 00 2 000 5 00 7 0 555555 6 8 11111 66 666666666666666 00 2 88888 3 1111 1 555555555 9 222 3 5 5 777 2 3 3 2 88 88888 1 2 5 444 9 77777 77 000 999 9 9 99
consensus : GGNGCAATATTTTAGAATCA---AGATCTCAATTT--CAATAG-ATA------TTTT-ATTCT-GT--TTAC--TTAAATTTA----CTATCTC----TTCA-AATA-TTTTT--T-GTT-TA----TAATG------TG-TGTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-ATT----AT-AT-ACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
Reference ( gi|2 ) : GGTGCAATATTTTAGAATTA---AGAACTCAATTT--CAAAAG-ATA------TTTT-ATTCT-GT--TTAC--TTAAATTTA---ATTATCTG----TTCA-AATA-TTTTT--T-GTT-TA----TAATG------TGATGTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-GTT----AT-AT-ACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|3 : GGAGCAATATTTTAGAATTA---AGATCTCAATTT--TAGAAG-ATA------TTTTTATTCT-GT--TTAC--TTA----T-----TTATTTC----TTCA-AATA-TTTTT--TTGTT-TA----TAATG------TGCTGTCTATTT-TTTTACT---------AC-AGATA-TCTATTT-ATT----AT-AT-ACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|4 : gGGAGCAATATTTTAGAATTA---AGATCTCAATTT--CAATATTATA------TTTT-ATTCT-GT--TTAC--TTAAATTTA-------TTTC----TTCA-------------------TA----TAATG------TGTTGTCT---T-TTTTGTTGTGT-TTTTAC-AGATA-TCTATTT-ATT----AT-AT-ACAGTATC--GCC-CTGTGACTT-----GATTT--T---TACCTG---AATAAATC-AT-AT--CTTAT
gi|1 : gGTGCAATATTTCAAGATCAGTCAAGATACAATTTT-CAATAG-ATA------TTTT-ATC--------TAC--TTAAATT--------ATCTC----TTCATAACA-TTTTT----ATT-TA----TCATGGCGTTCTTTTATTT---T-TTTTACTGTTG-CTCTCC-AGATA-TCTATAT-ATTTATCAT-AT-ATTG-ATT--GCC-TTGTGACTT-----GGTGT--T---TACCCG---AATAAATA-AT-AT--CTTAACAT
gi|7 : TGCAATACA--ATAATCG---ATATCTCAATTT--CAA--T-ATA------TTTT-ATTTT-AT--TTAC--TTGAATTTA---CCTA--CG----T----AATATTTTTT--T-ATT-TT----TCATG------CA----CT---TGTTTTATTTTGTGCTTTACTATATG-TCTATCT-ATT-----T-AT--CA-TCTTTCGCC-CTGTGACTT-----AGTTT--T---TACC
gi|5 : AATCA---AGATATCAATTTT-CAATAG-A-A------TGAT-ATTTT-AT--TTAC--TTGAATTTA-------CCTC----TTCA-TACAATTTTTAAT-ATT-TA----TCATG------TG-TTTTT---A-TTTTACTGGGT-CTTTGC-AGATG-TCTATCT-ATT-----T-ATTATA-TATT--ACC-CTGTGACTT-----GGATT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|15 : TA---AGATCTCAATTTTCCAATAG-ATA------TTTT-ATTCT-GT--TTACT-TTAAAT-------TTATCTC----TTCA-AATA-TTTTT--T-GTTATA----T-ATG------TGTTGTat
gi|16 : A---AGATCTCAATTT--CAATAG-ATACATGTATTTT-ATTCT-GT--TTAC--T---ATTTA-------TTTC----TTCC-AATA-TTTTT--T-GTT-AA----AAATG------TGTTGTat
gi|6 : ACTCTATTT--TGATTG-ATG------TTTT--TTCA-----TTACATTTACATGTA---ACTAACTT----TTAA-AATA-T-------------------AATT------TA----CTA--T-TTTTACTGTGC-TTTTCC-ATATT-TTTATCT---T----AT-TC-ATA-TATT--GGC-CTGTGATTT-----GGCTT--C---TACCTGAA-AATAAATC-AT-CT---ATAT
gi|14 : aatcaatCTCAATTT--CAATTG-ATA------TTTT-ATTTT-ATACTTAC--TTGAATTTA-----TACATAC---TTCA-TACA-TTTTT--atacaa
gi|8 : ttcatacaattatatAG-ATA------TTTC-ATTTT-AT--TTAC--TTAAAGTTA---GCTCT-TGAGTCTTCA-TGCA-TTTTT----ATT-TA----TCATG------CGGAGT-T---T-TTTTAACGTGC-TTTTCC-AGATG-GCTATCT-ATT----TT--T-ATA-TATT--GCC-TTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-ATAAT--CAatattatttt
gi|9 : tTT-ATTTTCAT--TTAC--ATGAACTTACAAACT-TCT-----TACA-------TTTT--C-ATT-TAATATTAACA------TG-TGCCT---A-TTTTACAGTTC-TTTTCC-AAATT-TCTATCC-ATT-----T-ATTACATAATT--GCC-CTGTGACTT-----GG-AT--A---TACCTG---AACAAATC-AT-ATACCATATgt
gi|13 : aTTATTTC----TTCA-AATA-TTTTT--T-GTT-TA----TA--------------------T-ATTTACTGTG---TTTAT-CTATA-TCTATTT-ATT----AT-AT-ACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCATa
gi|12 : -TTTTT--G-GTC-TT----TA-TG------TAATGTTT---T-TTTT-TTTTTT-TTTTAC-AGATA-ACTATTTAGTT----AT-AT-ACAGTATT--GCC-ATGTGACTT-----GGTTTGATA--TATATATATAATAAATC----AC--TATATCA
gi|11 : gtggTGTTT---T-TTTT-TTTTTT-TTTTAC-AGATA-TCTATTTAGTT----AT-AT-ACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATC-AT-AT--CATATCA
gi|10 : catttcaagttgtgttggtctttttaacTGTTT---T-TTTT-TTTTTT-TTTTAC-AGATAAGCTATTTAGTT----AT-AT-ACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATCAAT-AT--CATATCA
gi|17 : tcatcatgcacatttcagttagtgttggtcctttttaacCTATAT--TT----ATTAT-ACGATAT---GCCACTGTG-CTT-----GGTTT--T----ACCTG---AATAAATC-CT-AT--CATATCAat
gi|18 : ta--GCC-CTGTGACTTAAATTGGTTT--T----ACCTG---AAAAAATT-AT-AT--CTTGTCAT
gi|19 : TGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-GT--CATATata
Alignments
lowQualScore : 11 111111 33333333333 11111111 1111111111111111111 11111 111
lowQualScore : 1 9999 33 3 000000 3 0 66 44 77 00000000000 3 77 5 88888888 6666 4444 6666666666666666666 3 3 1 444 3 3 2 8 22222 2 5 666 2 66666 33 111 888 2 2 33
lowQualScore : . .... .. . ...... . . .. .. .. ........... . .. . ........ .... .... ................... . . . ... . . . . ..... . . ... . ..... .. ... ... . . ..
lowQualScore : 0 4444 55 6 555555 3 8 22 66 99 00000000000 1 55 7 33333333 1111 6666 2222222222222222222 1 5 5 777 1 1 9 6 33333 9 4 222 7 22222 44 222 333 7 7 77
consensus : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-CTATC---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TG-T-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
Reference ( family-3179 ) : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-CTATC---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TG-T-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|1 : GTGCAATATTTCAAGATCAGTCAAGATA-CAATTTT-CAATAG-A------TATTTT-ATC--------TAC--TTAAATT-----ATC---T-CTTCATAACA-TTTTT----A---TTTA----T--C-ATGGCGTTCTTT-T-ATTT---T-TTTTACTGTTG-CTCTCC-AGATA-TCTATAT-A-TTTATCATA-TATTG-ATT--GCC-TTGTGACTT-----GGTGT--T---TACCCG---AATAAATA-AT-AT--CTTAACAT
gi|10 : -T-GTTT---T-TTTT-TTTTTT-TTTTAC-AGATAAGCTATTT-AGTT----ATA-TACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATCAAT-AT--CATATCA
gi|11 : tcatcatgcacatttcagttagtgttggtcctttttaacTTCA-AGT--TGTGT--T-GGTCTTTT----T--A-AC-----------T-GTTT---T-TTTT-TTTTTT-TTTTAC-AGATA-TCTATTT-AGTT----ATA-TACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATC-AT-AT--CATATCAat
gi|12 : catTTTT--T-GGTCTTTA----TGTA-ATG-------TT-T-TTTT---T-TTTT----T-T-TTTTAC-AGATA-ACTATTT-AGTT----ATA-TACAGTATT--GCC-ATGTGACTT-----GGTTTGATA--TATATATATAATAAATC----AC--TATATCA
gi|13 : gtggTATT---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-----------------------T-ATTTACTGTGT-TT--AT-CTATA-TCTATTT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|14 : tATCTCAATTT--CAATTG-A------TATTTT-ATTTT-ATACTTAC--TTGAATTTA--TACA---TACTTCA-TACA-TTTTT--
gi|15 : ttcatacaattatA----AGATCTCAATTTTCCAATAG-A------TATTTT-ATTCT-GT--TTACT-TTAAATT----TATC---T-CTTCA-AATA-TTTTT--T-G----TTA----T--ATATG-------TG-T-atattatttt
gi|16 : tA----AGATCTCAATTT--CAATAG-ATACATGTATTTT-ATTCT-GT--TTAC--T---ATT----TATT---T-CTTCC-AATA-TTTTT--T-G---TTAA----A--A-ATG-------TG-T-tgtat
gi|17 : TATTT-A-TT----ATA---CGATAT---GCCACTGTG-CTT-----GGTTT--T----ACCTG---AATAAATC-CT-AT--CATATCAtgt
gi|18 : tacta--GCC-CTGTGACTTAAATTGGTTT--T----ACCTG---AAAAAATT-AT-AT--CTTGTCAT
gi|19 : TGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-GT--CATATata
gi|2 : tGGTGCAATATTTTAGAATTA----AGAACTCAATTT--CAAAAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTAATTATC---T-GTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TGAT-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-G-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCATt
gi|3 : GGAGCAATATTTTAGAATTA----AGATCTCAATTT--TAGAAG-A------TATTTTTATTCT-GT--TTAC--TTA---TT---TATT---T-CTTCA-AATA-TTTTT--TTG---TTTA----T--A-ATG-------TGCT-GTCTATTT-TTTTACT---------AC-AGATA-TCTATTT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|4 : gGGAGCAATATTTTAGAATTA----AGATCTCAATTT--CAATATTA------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-TT------T-CTTCA---------------------TA----T--A-ATG-------TG-TTGTCT---T-TTTTGTTGTGT-TTTTAC-AGATA-TCTATTT-A-TT----ATA-TACAGTATC--GCC-CTGTGACTT-----GATTT--T---TACCTG---AATAAATC-AT-AT--CTTAT
gi|5 : gAATCA----AGATATCAATTTT-CAATAG-A-------ATGAT-ATTTT-AT--TTAC--TTGAATTTA-C---C---T-CTTCA-TACAATTTTTAAT-A---TTTA----T--C-ATG-------TG-T-TTTT---A-TTTTACTGGGT-CTTTGC-AGATG-TCTATCT-A-TT-----TATTATA-TATT--ACC-CTGTGACTT-----GGATT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|6 : AATCA----ATA-CTCTATTT--TGATTG-A------TGTTTT--TTCA-----TTACATTTACATGTAACTAAC---T-TTTAA-AATA-T-----------------------A-ATT-------TA-----CTA--T-TTTTACTGTGC-TTTTCC-ATATT-TTTATCTTA-TT-----CA-TA---TATT--GGC-CTGTGATTT-----GGCTT--C---TACCTGAA-AATAAATC-AT-CT---ATATat
gi|7 : AATCG----ATATCTCAATTT--CAATA---------TATTTT-ATTTT-AT--TTAC--TTGAATTTA-C---------CTACGTAATATTTTTT--T-A---TTTT----T--C-ATG-------CA-----CT---TGTTTTATTTTGTGCTTTACTATATG-TCTATCT-A-TT-----TA-T-CA-TCTTTCGCC-CTGTGACTT-----AGTTT--T---TACCatacaa
gi|8 : tgcaatacaatTAG-A------TATTTC-ATTTT-AT--TTAC--TTAAAGTTAGCTCTTGAGT-CTTCA-TGCA-TTTTT----A---TTTA----T--C-ATG-------CG-G-AGTT---T-TTTTAACGTGC-TTTTCC-AGATG-GCTATCT-A-TT----TT--TATA-TATT--GCC-TTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-ATAAT--CA
gi|9 : TT-ATTTTCAT--TTAC--ATGAACTTA-CAAAC---T-TCTTA-CAT----TTT--C-A---TTTAATATT--A-ACA-------TG-T-GCCT---A-TTTTACAGTTC-TTTTCC-AAATT-TCTATCC-A-TTT---AT--TACATAATT--GCC-CTGTGACTT-----GG-AT--A---TACCTG---AACAAATC-AT-ATACCATATgt
Alignments
lowQualScore : 11 111111 33333333333 11111111 1111111111111111111 11111 111
lowQualScore : 1 9999 33 3 000000 3 0 66 44 77 00000000000 3 77 5 88888888 6666 4444 6666666666666666666 3 3 1 444 3 3 2 8 22222 2 5 666 2 66666 33 111 888 2 2 33
lowQualScore : . .... .. . ...... . . .. .. .. ........... . .. . ........ .... .... ................... . . . ... . . . . ..... . . ... . ..... .. ... ... . . ..
lowQualScore : 0 4444 55 6 555555 3 8 22 66 99 00000000000 1 55 7 33333333 1111 6666 2222222222222222222 1 5 5 777 1 1 9 6 33333 9 4 222 7 22222 44 222 333 7 7 77
consensus : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-CTATC---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TG-T-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
Reference ( family-3179 ) : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-CTATC---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TG-T-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|1 : GTGCAATATTTCAAGATCAGTCAAGATA-CAATTTT-CAATAG-A------TATTTT-ATC--------TAC--TTAAATT-----ATC---T-CTTCATAACA-TTTTT----A---TTTA----T--C-ATGGCGTTCTTT-T-ATTT---T-TTTTACTGTTG-CTCTCC-AGATA-TCTATAT-A-TTTATCATA-TATTG-ATT--GCC-TTGTGACTT-----GGTGT--T---TACCCG---AATAAATA-AT-AT--CTTAACAT
gi|10 : -T-GTTT---T-TTTT-TTTTTT-TTTTAC-AGATAAGCTATTT-AGTT----ATA-TACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATCAAT-AT--CATATCA
gi|11 : tcatcatgcacatttcagttagtgttggtcctttttaacTTCA-AGT--TGTGT--T-GGTCTTTT----T--A-AC-----------T-GTTT---T-TTTT-TTTTTT-TTTTAC-AGATA-TCTATTT-AGTT----ATA-TACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATC-AT-AT--CATATCAat
gi|12 : catTTTT--T-GGTCTTTA----TGTA-ATG-------TT-T-TTTT---T-TTTT----T-T-TTTTAC-AGATA-ACTATTT-AGTT----ATA-TACAGTATT--GCC-ATGTGACTT-----GGTTTGATA--TATATATATAATAAATC----AC--TATATCA
gi|13 : gtggTATT---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-----------------------T-ATTTACTGTGT-TT--AT-CTATA-TCTATTT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|14 : tATCTCAATTT--CAATTG-A------TATTTT-ATTTT-ATACTTAC--TTGAATTTA--TACA---TACTTCA-TACA-TTTTT--
gi|15 : ttcatacaattatA----AGATCTCAATTTTCCAATAG-A------TATTTT-ATTCT-GT--TTACT-TTAAATT----TATC---T-CTTCA-AATA-TTTTT--T-G----TTA----T--ATATG-------TG-T-atattatttt
gi|16 : tA----AGATCTCAATTT--CAATAG-ATACATGTATTTT-ATTCT-GT--TTAC--T---ATT----TATT---T-CTTCC-AATA-TTTTT--T-G---TTAA----A--A-ATG-------TG-T-tgtat
gi|17 : TATTT-A-TT----ATA---CGATAT---GCCACTGTG-CTT-----GGTTT--T----ACCTG---AATAAATC-CT-AT--CATATCAtgt
gi|18 : tacta--GCC-CTGTGACTTAAATTGGTTT--T----ACCTG---AAAAAATT-AT-AT--CTTGTCAT
gi|19 : TGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-GT--CATATata
gi|2 : tGGTGCAATATTTTAGAATTA----AGAACTCAATTT--CAAAAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTAATTATC---T-GTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TGAT-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-G-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCATt
gi|3 : GGAGCAATATTTTAGAATTA----AGATCTCAATTT--TAGAAG-A------TATTTTTATTCT-GT--TTAC--TTA---TT---TATT---T-CTTCA-AATA-TTTTT--TTG---TTTA----T--A-ATG-------TGCT-GTCTATTT-TTTTACT---------AC-AGATA-TCTATTT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|4 : gGGAGCAATATTTTAGAATTA----AGATCTCAATTT--CAATATTA------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-TT------T-CTTCA---------------------TA----T--A-ATG-------TG-TTGTCT---T-TTTTGTTGTGT-TTTTAC-AGATA-TCTATTT-A-TT----ATA-TACAGTATC--GCC-CTGTGACTT-----GATTT--T---TACCTG---AATAAATC-AT-AT--CTTAT
gi|5 : gAATCA----AGATATCAATTTT-CAATAG-A-------ATGAT-ATTTT-AT--TTAC--TTGAATTTA-C---C---T-CTTCA-TACAATTTTTAAT-A---TTTA----T--C-ATG-------TG-T-TTTT---A-TTTTACTGGGT-CTTTGC-AGATG-TCTATCT-A-TT-----TATTATA-TATT--ACC-CTGTGACTT-----GGATT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|6 : AATCA----ATA-CTCTATTT--TGATTG-A------TGTTTT--TTCA-----TTACATTTACATGTAACTAAC---T-TTTAA-AATA-T-----------------------A-ATT-------TA-----CTA--T-TTTTACTGTGC-TTTTCC-ATATT-TTTATCTTA-TT-----CA-TA---TATT--GGC-CTGTGATTT-----GGCTT--C---TACCTGAA-AATAAATC-AT-CT---ATATat
gi|7 : AATCG----ATATCTCAATTT--CAATA---------TATTTT-ATTTT-AT--TTAC--TTGAATTTA-C---------CTACGTAATATTTTTT--T-A---TTTT----T--C-ATG-------CA-----CT---TGTTTTATTTTGTGCTTTACTATATG-TCTATCT-A-TT-----TA-T-CA-TCTTTCGCC-CTGTGACTT-----AGTTT--T---TACCatacaa
gi|8 : tgcaatacaatTAG-A------TATTTC-ATTTT-AT--TTAC--TTAAAGTTAGCTCTTGAGT-CTTCA-TGCA-TTTTT----A---TTTA----T--C-ATG-------CG-G-AGTT---T-TTTTAACGTGC-TTTTCC-AGATG-GCTATCT-A-TT----TT--TATA-TATT--GCC-TTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-ATAAT--CA
gi|9 : TT-ATTTTCAT--TTAC--ATGAACTTA-CAAAC---T-TCTTA-CAT----TTT--C-A---TTTAATATT--A-ACA-------TG-T-GCCT---A-TTTTACAGTTC-TTTTCC-AAATT-TCTATCC-A-TTT---AT--TACATAATT--GCC-CTGTGACTT-----GG-AT--A---TACCTG---AACAAATC-AT-ATACCATATgt
blockSeqs : T . TC T TACATG T CA AC AT TAGCTCTTGAG A TA A TGGTC ATAT GTA TGCTGTCTATT G A T GTG T A T G TA T G TTC A AAATT GA TTT TAT A A AC
blockSeqs : A . T . . . A . T TAATTATC . A T TGGTC . AT TGATGTCT . A T TT . . . G A . G T . . . TTT AA . . .
blockSeqs : A . . . . . G . . TAACTAAC . A . AATA . A TGTTGTCT . A G TT . . . G A . G T . . . A . . . .
blockSeqs : . . . . . G . . TACAAAC . T . TTG . A TTTTTTT . G G GT . . . . A . G T . . . . . . . .
blockSeqs : . . . . . G . . TATACA . A . TG . A TGTTTTT . A G GT . . . . A . A T . . . . . . . .
blockSeqs : . . . . . G . . TTATT . A . TG . A CGGAGTT . A G GT . . . . A . G C . . . . . . . .
blockSeqs : . . . . . G . . TATC . A . TG . A TGTGCCT . A G GT . . . . A . G T . . . . . . . .
blockSeqs : . . . . . A . . TATT . A . TG . A TGTTT . A T GC . . . . A . G T . . . . . . . .
blockSeqs : . . . . A . . TATT . T . TA . C TACTA . A G GC . . . . A . T T . . . . . . . .
blockSeqs : . . . A . . TACC . A . CA . A CACT . . G TC . . . . T . . T . . . . . . . .
blockSeqs : . . . . TAC . T . A . C . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . C . . . C . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : **** ** G* TATC******* A* TG****** TGTTGTCT*********** A****
originalCons : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-A------TATTTT-ATTCT-GT--TTAC--TTAAATTTA-CTATC---T-CTTCA-AATA-TTTTT--T-G---TTTA----T--A-ATG-------TG-T-GTCT---T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-A-TT----ATA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
finalCons : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-A------TATTTT-ATTCTG-T--TTAC--TTAAATTTATC-------T-CTTCAA-ATA-TTTTTTG------TTTA----T--A-ATGTGTTGTCT-----------T-TTTTACTGTGT-TTTTAC-AGATA-TCTATCT-A-TTA----TA-TACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
Alignments
lowQualScore : 11 111111 111111111 1111111 11111111 11111111111 1111 111
lowQualScore : 1 9999 33 3 000000 999 2 33 44 3 111111111 888 1 2222222 6 2 44444444 6666 4444 777777 2 33 55555 3 77 44444444444 3 3 2 8 1111 1 5 666 2 66666 33 111 888 2 2 33
lowQualScore : . .... .. . ...... ... . .. .. . ......... ... . ....... . . ........ .... .... ...... . .. ..... . .. ........... . . . . .... . . ... . ..... .. ... ... . . ..
lowQualScore : 0 4444 55 6 555555 222 9 44 66 3 444444444 555 5 5555555 2 9 22222222 1111 6666 777777 7 11 88888 5 22 66666666666 1 1 9 6 8888 5 4 222 7 22222 44 222 333 7 7 77
consensus : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-ATA------TTTT---ATTCT-GT--TTACTT-GAATTTA----T----CT---CTTCA-A-----ATA-T-TTTT--T-G---TTTA----T--A-ATG------TG-TTG-TCT---TTTTTACTGTGTTTTT-----------AC-AGATA-TCTATCT-A-TT----ATATACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
Reference ( family-3179 ) : GGNGCAATATTTTAGAATCA----AGATCTCAATTT--CAATAG-ATA------TTTT---ATTCT-GT--TTACTT-AAATTTA----T----CT---CTTCA-A-----ATA-T-TTTT--T-G---TTTA----T--A-ATG------TG-TTG-TCT---TTTTTACTGTGTTTTT-----------AC-AGATA-TCTATCT-A-TT----ATATACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|1 : GTGCAATATTTCAAGATCAGTCAAGATA-CAATTTT-CAATAG-ATA------TTTT---ATC--------TACTT-AAATT-A----T----CT---CTTCATA-----ACA-T-TTTT----A---TTTA----T--C-ATGGCGTTCTT-TTA-TTT---TTTTTACTGTTGCTCT-----------CC-AGATA-TCTATAT-A-TTTATCATATATTG-ATT--GCC-TTGTGACTT-----GGTGT--T---TACCCG---AATAAATA-AT-AT--CTTAACAT
gi|10 : ---TTTT----T--A-AC-------TG-TTT-TTT---TTTTT----TTTTTTT-----------AC-AGATAAGCTATTT-AGTT----ATATACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATCAAT-AT--CATATCA
gi|11 : tcatcatgcacatttcagttagtgttggtccTG------TG-TTGGTCT---TTTTAACTGTTTTTTTTTTTTTTTTTTAC-AGATA-TCTATTT-AGTT----ATATACAGTAT---GCC-ATGTGACTT-----GGTTT--TTTTTACCTG---AATAAATC-AT-AT--CATATCAat
gi|12 : catttcaagt-TTTT--T-GGTCTTTA----TGTA-ATG------TT-TTT-TTT---TTTTT------TTTTT-----------AC-AGATA-ACTATTT-AGTT----ATATACAGTATT--GCC-ATGTGACTT-----GGTTTGATA--TATATATATAATAAATC----AC--TATATCA
gi|13 : gtggTTA----T----TT---CTTCA-A-----ATA-T-TTTT--T-G---TTTA----T--A-----------------------TATTTACTGTG--TTT-----------AT-CTATA-TCTATTT-A-TT----ATATACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCAT
gi|14 : ATCTCAATTT--CAATTG-ATA------TTTT---ATTTT-ATACTTACTT-GAATTTA----T----ACATACTTCA-T-----ACA-T-TTTT--
gi|15 : ttcatacaattatA----AGATCTCAATTTTCCAATAG-ATA------TTTT---ATTCT-GT--TTACTTTAAATTTA----T----CT---CTTCA-A-----ATA-T-TTTT--T-G----TTA----T--ATATG------TG-TTG-Tatattatttt
gi|16 : tA----AGATCTCAATTT--CAATAG-ATACATGTATTTT---ATTCT-GT--TTACT----ATTTA----T----TT---CTTCC-A-----ATA-T-TTTT--T-G---TTAA----A--A-ATG------TG-TTG-Tat
gi|17 : TATTT-A-TT----ATA--CGATAT---GCCACTGTG-CTT-----GGTTT--T----ACCTG---AATAAATC-CT-AT--CATATCA
gi|18 : tacta--GCC-CTGTGACTTAAATTGGTTT--T----ACCTG---AAAAAATT-AT-AT--CTTGTCAT
gi|19 : TGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-GT--CATATata
gi|2 : tGGTGCAATATTTTAGAATTA----AGAACTCAATTT--CAAAAG-ATA------TTTT---ATTCT-GT--TTACTT-AAATTTAATTAT----CT---GTTCA-A-----ATA-T-TTTT--T-G---TTTA----T--A-ATG------TG-ATG-TCT---TTTTTACTGTGTTTTT-----------AC-AGATA-TCTATCT-G-TT----ATATACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATATCATt
gi|3 : GGAGCAATATTTTAGAATTA----AGATCTCAATTT--TAGAAG-ATA------TTTTT--ATTCT-GT--TTACTT-A--TTTA----T----TT---CTTCA-A-----ATA-T-TTTT--TTG---TTTA----T--A-ATG------TG-CTG-TCTATTTTTTTACT-------------------AC-AGATA-TCTATTT-A-TT----ATATACAGTATT--GCC-CTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|4 : gGGAGCAATATTTTAGAATTA----AGATCTCAATTT--CAATATTATA------TTTT---ATTCT-GT--TTACTT-AAATTTA----T----TT---CTTCA---------------------------TA----T--A-ATG------TG-TTG-TCT---TTTTTGTTGTGTTTTT-----------AC-AGATA-TCTATTT-A-TT----ATATACAGTATC--GCC-CTGTGACTT-----GATTT--T---TACCTG---AATAAATC-AT-AT--CTTAT
gi|5 : gAATCA----AGATATCAATTTT-CAATAG-A-A------TGAT---ATTTT-AT--TTACTT-GAATTTA----C----CT---CTTCA-T-----ACAAT-TTTTAAT-A---TTTA----T--C-ATG------TG-TT--TTT---ATTTTACTGGGTCTTT-----------GC-AGATG-TCTATCT-A-TTT---AT-TATA-TATT--ACC-CTGTGACTT-----GGATT--T---TACCTG---AATAAATC-AT-AT--CATAT
gi|6 : AATCA----ATA-CTCTATTT--TGATTG-ATG------TTTTTTCATTAC-AT--TTACAT-GTAACTA----A----CT---TTTAA-A-----ATA-T------------------------A-ATT------TA-CTA-T------TTTTACTGTGCTTTT-----------CC-ATATT-TTTATCTTA-TT-----CATA---TATT--GGC-CTGTGATTT-----GGCTT--C---TACCTGAA-AATAAATC-AT-CT---ATATat
gi|7 : AATCG----ATATCTCAATTT--CAATA---TA------TTTT---ATTTT-AT--TTACTT-GAATTTA----C----CTA--CGT---A-----ATATT-TTTT--T-A---TTTT----T--C-ATG------CACTTG-TTT---TATTT--TGTG-CTTT-----------ACTATATG-TCTATCT-A-TT-----TAT-CA-TCTTTCGCC-CTGTGACTT-----AGTTT--T---TACCatacaa
gi|8 : tgcaatacaatTAG-ATA------TTTC---ATTTT-AT--TTACTT-AAAGTTA----G----CT---CTTGA-GTCTTCATG-CATTTT--T-A---TTTA----T--C-ATG------CG-GAG-T-T---TTTTTAACGTGCTTTT-----------CC-AGATG-GCTATCT-A-TT----TT-TATA-TATT--GCC-TTGTGACTT-----GGTTT--T---TACCTG---AATAAATC-ATAAT--CA
gi|9 : TT---ATTTTCAT--TTACAT-GAACTTA----CAAACTT---CTT---------ACA-T-TTTC----A---TTTAATATT--A-ACA------TG-T-G-CCT---ATTTTACAGTTCTTTT-----------CC-AAATT-TCTATCC-A-TTT---AT-TACATAATT--GCC-CTGTGACTT-----GG-AT--A---TACCTG---AACAAATC-AT-ATACCATATgt