lowQualScore : 22222222 1 22222222222 11 111111111 22 4444444444444444444 11111111111 1111 1 111111 1111 111111 111111
lowQualScore : 4 3 44 888888 33 777 55 1 555 44 44 77777777 6 3 3 3 9999 3 77 0 3 3 99999999999 77 999 33 0 3 88888 555555555 33 3 11 2 2222222222222222222 3 3 3 66666666666 44 4444 3 6 3 3 6 3 3 222222 77777 9999 3 3 3 3 000000 9 3 000000 7 3 6 55 4 4 4 1 4 4 4
lowQualScore : . . .. ...... .. ... .. . ... .. .. ........ . . . . .... . .. . . . ........... .. ... .. . . ..... ......... .. . .. . ................... . . . ........... .. .... . . . . . . . ...... ..... .... . . . . ...... . . ...... . . . .. . . . . . . .
lowQualScore : 0 3 66 888888 99 222 88 5 888 22 22 99999999 7 3 3 3 3333 3 99 4 3 3 88888888888 99 222 88 9 3 77777 444444444 22 1 88 9 2222222222222222222 3 3 3 22222222222 22 3333 3 7 0 6 7 3 3 999999 77777 3333 3 3 6 6 555555 6 6 555555 6 6 0 55 4 4 4 9 4 4 4
consensus : TCACC-CTTGGCAGATATAGC--CG------GCAAAATGAAA--A--CTTT-GAGTGG--CG--CCATCT--G-T------C-GT-C-A-T---AAAC-T--AGTTAC-A-GA------A----ACTAA--TGTA---CGCA--AAACGA-A-AG--AATA-------CA-CG-TTTT--AA-AAAAA----A---CAA----A-AACACC-AG-G-TCTTAAA----AT--ATNTTT--TTT-NG-TA-AGTAAATCGTCTAAGATA-AATCGTATCATAG-TC-A-T-TT------C-----AAAGTAAAATATATCAAATT---T-ATTACC-TTTTTTGAAATT-G-TTT------TTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
Reference ( gi|5 ) : TCACC-CTTGGCAGACATAGC--CG------GCAAAATGAAA--A--TTTT-GAGTGG--CG--CCATCT--G-T------C-GT-C-A-T---AAAC-T--AGTTAC-A-GA------A----ACTAA--TGTA---CGCA--AAACGA-A-AG--AATA-------CA-CG-TTTTG-AA-AAAAA----A---CAA----AAAACACC-AG-G-TCTTAAA----AT--ATATTT--TTT-AG-TA-AGTAAATCGTCTAAGATA-AATCATATCATAG-TC-A-T-TT------C-----AAAGTAAAATATATCAAATC---T-ATTACC-TTTTTTGAAATT-G-TTT------TTATCAAG-CAA------TTGATTTTCACAT-AATGCGTCAATTAGTAGAATTTGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|3 : TCACC-CTTGGCAGATATAGC--CG------GCAAAATGAAA--A--CTT-----------------TCT--G-T------C-GT-C-A-T---AAAC-T--AGTTAC-C-AATTTTTTA----ACTAA--TGTA---CGCA--AAACGA-A-AG--AATA-------CA-CG-TTTT---A-AAAAA----A---C---------CCACC-AGCGTTCTTAA---------ATTTTT--TTT-TG-TA-TGTAAATCGTCTAAGATA-AATCGTATCATAG-TA-A-T-TT------C-----AAAGTAAAATATATCAAATT---G-ATTACCTTTTTTTGAAATT-GTTTT------TTACCAAG-CAA------TTGATTTTCGC-T-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|2 : TCACC-CTTGGCAGACATAGCAACGAAAAATGAAAAATGAAA--A--CTTT-AGTTGG--CGGTCAATCT--G-T------TAGT-C-A-T---AAACCT--AGTTAC-A-GA------A----ACTAAA-TGTAG--CGCA--AAACGA-ATAG--AATA-------CA-CG-TTTTG-AAGAAAAA----A---C------GCCACACCGAG-G-TCTTAAA----AT--ATATTT--TTT-GG-TA-AGTAAATCGTCTATGATA-AATCGTATTATAG-TC-A-A-TT------C-----AAACTAAAATATGTCAAATC---T-ATTACC-TTTTATAAAATT-G-TTT------TTAACAAG-CAA------TTGATTTTCGCAT-AATGAATCAATTAGTAGAATTCTTGCG--AAA-AGTG-ATCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTttcatctgccaagggtgaa
gi|2 : TCACC-CTTGGCAGACATAGC--CG------GGAAAATGAAA--A--CATT--AATGA--AG--CCATCT--GATTGGTTGC-GT-CGA-T----CAC-T--TTTCGCAA-GA------ATTCTACTAA--TTGA---TTCATTATGCGA-A-AATCAAT--------TG-CT-TGTTA-AA-AACAATTTTA---TAA----AAGGTAAT-AG-A-T-TTGAC----AT--A----T--TTT-AG-T---TTGAATTGACTATAATACGATT-TATCATAG-ACGA-T-TTACTTACC-----AA---AAAATATATtttcattttcccggctatgtctgccaagggtgaa
gi|10 : tcacccttggcagacatagcaacgaaaaatgaaaaatgaaaactttagttggcggtcaatctgttagtcataaacctagttacagaaactaaatgtagcgcaaaacgaatagaatacacgttttgaagaaaaaacgccacaccgaggtcttaaaTCACC-CTTGGCAGATATAAC--CG------GCAAAATGAAA--A--CTTT-GAGCAG--GA--CCATCT--G-C------C-GT-C-A-A---AAAC-T--AGTTAC-A-GA------C----ACTAA--TGTT---CGCA--AAACGA-A-AG--AATG-------CA-AG-TTTTA-AA-AAAAA----C---C-------CAACACC-TG-G-TCATAAA----AT--A---TT--TTT-GG-TA-AGTAAATTGTCTCAGATA-AATCGTATAGTGG-TC-A-T-TT------A-----AAAGTAAAATATATCAAATT---T-ATTACC-TTTTTTGAAATT-G--TT------TTACCAAG-CAA------TTGACATTCGCAT-AATGTGTAAATTAGTAGAATTCGTGCG--AAa
gi|1 : TCACC-CTTGGCAGATATAGC--CG------GCAAAATCAAACCA--TT----AGTGA--AG--CCATCT--GATCGGTTGC-GT-C-G-C---TCAC-T--GTTCGC-ACGA------ATTCTACTAA--TTGA---CGCATTATGCGA-A-----AAT--------CA--A-TTGT------AAAA----A---CAATTTTAAAAC-----G-G-TAATAAA----TTTGATATTTACTTT-G--------AAAT-GACTATGATACGATT-TATCTTAG-ACGA-T-TTA-----CTTTAAAAAGAAAAATTTA--AGACCTGGT-GTTGTT-TTTCTTTAAA
gi|11 : acccttggtagatatagccggcaaaatgaaaactttgggtggcgccatctgttacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacgctTCACC-CTTGGCAAATATAGC--CG------TCAAAATGAAA--A--CATT--AATGA--AG--CCATCT--GATTGGTTGC-GT-C-G-C---TTAC-T--GTTCGC-ACGA------ATTCTGCTAA--TTAA---CGCATTATGCGA-A-----AATC-------TATTG-CTTGGTAA-AAACA----ATCTCAA----AAA------AG-G-TACTAAATTTGAT--ATATTT--Taagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|17 : atttcaaagtTCACC-CTTGGCAGATATAGC--CG------GCAAAATGAAA--A--a
gi|1 : tACC-CTTGGTAGATATAGC--CG------GCAAAATGAAA--A--CTTT-GGGTGG--CG--CCATCT--G-T------cattaa
gi|13 : ACCGCTTGGCAGATATAGC--C-------GCAAAATGAAA--AACTGTT-GAGTGG--CG---CATCT--G-T------T--T-C-A-T----AAC-TA-AGTTAC-A-GA------C----ACTAA--TGTA-----CA--AAACAATA-AG--AATA-------CA-TG-TTTTT-AA-tacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacgcttttaaagaaaaacaacaccaggtcttaaatttttctttttaaagtaaatcgtctaagataaatcgtatcatagtcatttcaaagtaaatatcaaatttattaccgttttaaaattgtttttacaattgattttcgcataatgcgtcaattagtagaattcgtgcgaacagtgagcgacgcaaccgatcagatggcttcactaatggtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|8 : ttcaa-CTTGGCAGATATAGC--CG------GCAAAATGAAA--A--CTTTCGAGTGG--CG--CCATCT--G-T------C-GT-C-A-T---AAAC-T--AGTTAC-A-GA------A----ACTAA--TGTA---CGCA--AAACGA-A-AG--AATAGATTATACA-CG-TTTT-----AAAAA----A---CAA--------CACC-AG-G-TCTTAAA----AT--ATTTTT--TTT--G-TA-AGTAAATCGTCGAAGATA-AATCGTAATATAG-TC-A-T-TT------C-----AAAGTAAAATATAACAAATT---T-ATTACC-TTTTTTGAAATT-G-TTT------TTACTATG-CAA------TTGATTTTCGCAT-AATGCGTCA
gi|7 : ttcacccttcaggGGCAGATATAGT--CG------ACACAATGAAA--A--CTTT-GAGTAG--CG--CCATCT--G-T------C-GT-C-A-T---AAAC-T--AGTTAC-A-GA------C----ACTAA--TGTA---CGCA--AAACG--------------------------TTT---A-AAAAA----A---CCA----ACAACACC-AG-G-TCTTGAA----TT--TT-TTT--TTT-CG-TA-AGTAAATTGTCTAAGATA-AATCGTATCATAG-TC-A-T-TT------C-----AAAGTAAAATATATCAAATT---T-ATTACC-TTTTTTGAAATT-G-TTT------TTACCAAG-CAA------TTGATTTTCCCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATG-GC-TTT-ATTAATGTgagcgaatcttacgag
gi|14 : ATATAGC--C---------AAAATGAAA------CTT-GAA-GGACCG--CACTCT--G-T------C-GC-C-A-TTACAAA--T--A-TTAC-AGGA------A----ACT-A--TGT----CGCA--AGAC------G--AATA--------A-CA-TTTT--AA-AAAAA----C---CAA----tt
gi|6 : G------GCAAAATGAAA--A--CTTT-GAGTGG--CG--CCATCT--G-T------C-GT-C-A-T---AAAC-T--AGTTAC-A-GG------A----ACTA----------CGCA--AAACGA-A-AG--AATA-------CA-CG-TT----AA-AAAAA----A---CAA--------CACC-AG-G-TCTTAAAT---AT---TTTTT--TTT-TG-TA-AGAAAATCGTCTAAGATA-AATCGTATCATAG-TC-A-T-TT------C-----AAAGTAAAATATATCAAATCTATT-ATTACC-TTTTTTGAAATT-G-TTT------TTACCAAG-CAA------TTGATTTTCGCAT-AATGTGTTAAT---TAGAATTCGTACG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTc
gi|9 : cttAAA--A--TTTC-GAG------A--CCATGTACG-T------CCGTTC-AGT---AAAC-TTGAGTTAC-ATGA------C----ACTAGAGTGTAATTCGTC--ATAT---A-AG--G-------------CG-TTT---AA-AATAA----AT--CCA----ACAACACA-AG-G-TCTTGAA-----T--ATTTTT--TTTTCG-TGTAGTAAATTGTCTAAGATA-AATCGTATCATAG-TC-A-T-TT------C-----AAAGTAAAATATATCAAAT----T-ATTACC-TTTTTTGAAA-T-G-TTT------TTACCAAG-CAA------TTGATTTTCCCATAAATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATGTGC-TTT-ATtttcatctgccaagggtgaa
gi|1 : A-------CA-CGCTTTTA-AA-GAAAA----A---CAA--------CACC-AG-G-TCTTAAA----TT--TTTCTT--TTT-A---A-AGTAAATCGTCTAAGATA-AATCGTATCATAG-TC-A-T-TT------C-----AAAGTAAA---TATCAAATT---T-ATTACC-GTTTT-AAAATT-G-TTT------TTA------CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCGATCAGATG-GC-TTC-ACTAATG
gi|16 : acccttggtagatatagccggcaaaatgaaaactttgggtggcgccatctgttacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-AAAAA----A---CAA--------CACC-AG-G-TCTTGAA----AT--ATATAT--TTT-TG-TA-AGTAAATCGTCTAAGATT-AATCgtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|4 : ----AT--ATGTTC--TTT-AGATA-TATAATTCGA--AAGATG-GGT---ATCATAGGTC-AATATT------C-----AA-GTAAATT---TCAAATT---TTATTACC-TTTTTTGGAATTGG-TTT------TTACAGAGACAACTGGATTTGATTTTCGCAT-A
gi|11 : -A-T-TT------C-----AAAGTAAAATATATCAAATT---T-AGTACC-TTTTTTGAGATT-G-TTT------TTACCAAG-CAA------TAGATTTTCGCAT-AATGCGTTAATTAGCAGAATTCGTGCG--AAC-AGTA-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTgaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcataccgtgcggaaacgagtggagcaacgcaaccaatcagatggcttcgattatgttatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|12 : -----AAAGTAAAATAT--CGAAT--------TGCT-CGTTTC--AACG-G-TTTGNNNNNNNNNNNNN-NNN------NNNNNNNNNGCAT-AATGTGTTAATTAG--GAATTCGTACG--A-C-AGTG-AGCGAGCGCAACCAATCAGA-G-GCGTTC-ATTAATGTtttcattttgacggctatatttgccaagggtgaa
gi|4 : GTGCGGAAACGAGTGGAGCAA-CGCAACCAATCAGATG-GC-TTCGATT-ATGTtttcatctgccagggtgaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGACTAAACCATTTT
Unaligned ( gi|18 ): TGAAAGAGAAACACCATGTGTCGTCACCCTTGTCAAGC
Alignments
lowQualScore : 11111111111 111 1111111 33333333333333 1111
lowQualScore : 4 44 888888 2 2 55 44 44 3 99999999 3 3 666 3 88 7 3 77777777777 999 000 55 3 55 0000000 3 3 5555 3 55555555555555 3 3 3 0000 44 2 4 3 3 4 3 3 555 3 3 999999 3 3 3 999999 3 55 4 4 4 0 4 4 4
lowQualScore : . .. ...... . . .. .. .. . ........ . . ... . .. . . ........... ... ... .. . .. ....... . . .... . .............. . . . .... .. . . . . . . . ... . . ...... . . . ...... . .. . . . . . . .
lowQualScore : 0 66 888888 9 9 22 22 22 1 88888888 6 6 444 6 66 3 6 99999999999 999 000 00 6 77 8888888 3 3 0000 1 55555555555555 6 6 6 4444 77 2 5 6 6 0 6 6 888 3 3 666666 3 3 3 666666 3 00 0 0 0 8 0 0 0
consensus : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA-AAAAA---CAA-A----A-CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
Reference ( family-3062 ) : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA-AAAAA---CAAAA----A-CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|1 : ACC-CTTGGTAGATATAGC--CG------GCAAAATG-AAAACT-TT-GGGTGGCG--CCATCT--G-T------
gi|1 : A-------CA-CGCTTT--T-AAAGAAAAA---CAA--------CACC-AG-G-TCTTAAA----TTT-TTCTTTTTA---A-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAA---TATCAAAT---TT-ATTACC-GTT------TT-AAAATT-G-TTTTTAC------AA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCGATCAGATG-GC-TTC-ACTAATGtacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacgcttttaaagaaaaacaacaccaggtcttaaatttttctttttaaagtaaatcgtctaagataaatcgtatcatagtcatttcaaagtaaatatcaaatttattaccgttttaaaattgtttttacaattgattttcgcataatgcgtcaattagtagaattcgtgcgaacagtgagcgacgcaaccgatcagatggcttcactaatggtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|10 : acccttggtagatatagccggcaaaatgaaaactttgggtggcgccatctgttacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCACC-CTTGGCAGATATAAC--CG------GCAAAATG-AAAACT-TT-GAGCAGGA--CCATCT--G-C------C-GT-CA-A---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTT---CGCA--AAACGA-A-AGAATG-------CA-AG-TTT--T-AAA-AAAAA---C-CCA----A-CACC-TG-G-TCATAAA----ATA----TTTTTGG-TA-AGTAAATTGTCTCAGATAAATCGTATAGTGG-TCA-T-TTAAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G--TTTTACCAAG-CAA------TTGACATTCGCAT-AATGTGTAAATTAGTAGAATTCGTGCG--AAgtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|11 : A-T-TTCAAAGTAAAATATATCAAAT---TT-AGTACC-TTT------TTTGAGATT-G-TTTTTACCAAG-CAA------TAGATTTTCGCAT-AATGCGTTAATTAGCAGAATTCGTGCG--AAC-AGTA-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|11 : TCACC-CTTGGCAAATATAGC--CG------TCAAAATG-AAAACA-TT--AATGAAG--CCATCT--GATTGGTTGC-GT-CG-C---TTAC-T--GTTCGCACG-A------ATTCTGCTAA--TTAA---CGCATTATGCGA-A---AATC-------TATTG-CTTGGT-AAA-AACAATCTCAAAA----A------AG-G-TACTAAATTTGATA-TATTTTtttcattttgacggctatatttgccaagggtgaa
gi|12 : atttcaaagtAAAGTAAAATAT--CGAAT---TG-CT--CG-TTTCAACGGTTTGNNNNN-N-NNNNNNNNNNN-NNN------NNNNN----GCAT-AATGTGTTAATTAG--GAATTCGTACG--A-C-AGTG-AGCGAGCGCAACCAATCAGA-G-GCGTTC-ATTAATGTa
gi|13 : ACCGCTTGGCAGATATAGC--C-------GCAAAATGAAAAACTGTT-GAGTGGCG---CATCT--G-T------T--T-CA-T----AAC-TA-AGTTACA-G-A------C----ACTAA--TGTA-----CA--AAACAATA-AGAATA-------CA-TG-TTT--T-TAA-tttcatctgccagggtgaa
gi|14 : ttcaaATATAGC--C---------AAAATG-AAA-CT-TG-AAGGACCG--CACTCT--G-T------C-GC-CA-TTACAAA--T--A-TTACA-GGA------A----ACTA---TGT----CGCA--AGACGA-A-----TA--------A-CA-TTT--T-AAA-AAAAC---CAA
gi|16 : AA-AAAAA---CAA--------CACC-AG-G-TCTTGAA----ATA-TATATTTTTG-TA-AGTAAATCGTCTAAGATTAATCc
gi|17 : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACA-TT-AA
gi|2 : tTCACC-CTTGGCAGACATAGCAACGAAAAATGAAAAATG-AAAACT-TT-AGTTGGCGGTCAATCT--G-T------TAGT-CA-T---AAACCT--AGTTACA-G-A------A----ACTAAA-TGTAG--CGCA--AAACGA-ATAGAATA-------CA-CG-TTT--T-GAA-GAAAA------AACGCCA-CACCGAG-G-TCTTAAA----ATA-TATTTTTTGG-TA-AGTAAATCGTCTATGATAAATCGTATTATAG-TCA-A-TTCAAACTAAAATATGTCAAAT---CT-ATTACC-TTT------TATAAAATT-G-TTTTTAACAAG-CAA------TTGATTTTCGCAT-AATGAATCAATTAGTAGAATTCTTGCG--AAA-AGTG-ATCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|2 : TCACC-CTTGGCAGACATAGC--CG------GGAAAATG-AAAACA-TT--AATGAAG--CCATCT--G-tttcattttcccggctatgtctgccaagggtgaa
gi|3 : tcacccttggcagacatagcaacgaaaaatgaaaaatgaaaactttagttggcggtcaatctgttagtcataaacctagttacagaaactaaatgtagcgcaaaacgaatagaatacacgttttgaagaaaaaacgccacaccgaggtcttaaaatatattttttggtaagtaaatcgtctatgataaatcgtattatagtcaattcaaactaaaatatgtcaaatctattaccttttataaaattgtttttaacaagcaattgattttcgcataatgaatcaattagtagaattcttgcgaaaagtgatcgacgcaaccaatTCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-T---------------TCT--G-T------C-GT-CA-T---AAAC-T--AGTTACC-A-ATTTTTTA----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA-AAAAC---C----------CACC-AGCGTTCTTAA-------A-TTTTTTTTTG-TA-TGTAAATCGTCTAAGATAAATCGTATCATAG-TAA-T-TTCAAAGTAAAATATATCAAAT---TG-ATTACCTTTT------TTTGAAATT-GTTTTTTACCAAG-CAA------TTGATTTTCGC-T-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTa
gi|4 : ----ATA-TGTTCTTTAGATA-TATAATTCGA--AAGATGG---GTATCATAGGTCAATATTCAA-GTAAATT---TCAAAT---TTTATTACC-TTT------TTTGGAATTGG-TTTTTACAGAGACAACTGGATTTGATTTTCGCAT-Attcatctgccaagggtgaa
gi|4 : CGTGCGGAAACGAGTGGAGCAA-CGCAACCAATCAGATG-GC-TTCGATT-ATGTgaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcataccgtgcggaaacgagtggagcaacgcaaccaatcagatggcttcgattatgttatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|5 : atatgttctttagatatataattcgaaagatgggtatcataggtcaatattcaagtaaatttcaaattttattaccttttttggaattggtttttacagagacaactggatttgattttcgcatagaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcatacTCACC-CTTGGCAGACATAGC--CG------GCAAAATG-AAAATT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--TGAAA-AAAAA---CAAAA----AACACC-AG-G-TCTTAAA----ATA-TATTTTTTAG-TA-AGTAAATCGTCTAAGATAAATCATATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---CT-ATTACC-TTT------TTTGAAATT-G-TTTTTATCAAG-CAA------TTGATTTTCACAT-AATGCGTCAATTAGTAGAATTTGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTtatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|6 : G------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-G------A----ACTA----------CGCA--AAACGA-A-AGAATA-------CA-CG-TT-----AAA-AAAAA---CAA--------CACC-AG-G-TCTT-AA----ATATTTTTTTTTTG-TA-AGAAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAATCTATT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGTGTTAAT---TAGAATTCGTACG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|7 : cttGGCAGATATAGT--CG------ACACAATG-AAAACT-TT-GAGTAGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTA---CGCA--AAACG------------------------TT--T-AAA-AAAAC---CAACA----A-CACC-AG-G-TCTTGAA----TT--TTTTTTTTCG-TA-AGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCCCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATG-GC-TTT-ATTAATGTtttcatctgccaagggtgaa
gi|8 : -CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TTCGAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATAGATTATACA-CG-TTT--T-AAA-AAA-----CAA--------CACC-AG-G-TCTTAAA----ATA-TTTTTTTT-G-TA-AGTAAATCGTCGAAGATAAATCGTAATATAG-TCA-T-TTCAAAGTAAAATATAACAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACTATG-CAA------TTGATTTTCGCAT-AATGCGTCAtt
gi|9 : ttcacccttcagg-AAAATT-TC-GAG----A--CCATGTACG-T------CCGTTCAGT---AAAC-TTGAGTTACATG-A------C----ACTAGAGTGTAATTCGTC--ATAT---A-AGG-------------CG-TTT----AAA-ATAAATC-CAACA----A-CACA-AG-G-TCTTGAAT---AT--TTTTTTTTCG-TGTAGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAA----TT-ATTACC-TTT------TTTGAAA-T-G-TTTTTACCAAG-CAA------TTGATTTTCCCATAAATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATGTGC-TTT-ATgagcgaatcttacgag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGACTAAACCATTTT
Unaligned ( gi|18 ): TGAAAGAGAAACACCATGTGTCGTCACCCTTGTCAAGC
Alignments
lowQualScore : 11111111111 111 1111111 111 22222 1111
lowQualScore : 4 44 888888 2 2 55 44 44 3 99999999 3 3 666 3 88 7 3 77777777777 999 000 55 3 55 0000000 3 3 5555 77 000 66666 3 3 3 0000 44 2 4 3 3 4 3 3 555 3 3 999999 3 3 3 999999 3 55 4 4 4 0 4 4 4
lowQualScore : . .. ...... . . .. .. .. . ........ . . ... . .. . . ........... ... ... .. . .. ....... . . .... .. ... ..... . . . .... .. . . . . . . . ... . . ...... . . . ...... . .. . . . . . . .
lowQualScore : 0 66 888888 9 9 22 22 22 1 88888888 6 6 444 6 66 3 6 99999999999 999 000 00 6 77 8888888 3 3 0000 33 444 88888 6 6 6 4444 77 2 5 6 6 0 6 6 888 3 3 666666 3 3 3 666666 3 00 0 0 0 8 0 0 0
consensus : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
Reference ( family-3062 ) : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|1 : ACC-CTTGGTAGATATAGC--CG------GCAAAATG-AAAACT-TT-GGGTGGCG--CCATCT--G-T------
gi|1 : A-------CA-CGCTTT--T-AAAG-AAAAA---CAA-----CACC-AG-G-TCTTAAA----TTT-TTCTTTTTA---A-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAA---TATCAAAT---TT-ATTACC-GTT------TT-AAAATT-G-TTTTTAC------AA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCGATCAGATG-GC-TTC-ACTAATGtacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacgcttttaaagaaaaacaacaccaggtcttaaatttttctttttaaagtaaatcgtctaagataaatcgtatcatagtcatttcaaagtaaatatcaaatttattaccgttttaaaattgtttttacaattgattttcgcataatgcgtcaattagtagaattcgtgcgaacagtgagcgacgcaaccgatcagatggcttcactaatggtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|10 : acccttggtagatatagccggcaaaatgaaaactttgggtggcgccatctgttacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCACC-CTTGGCAGATATAAC--CG------GCAAAATG-AAAACT-TT-GAGCAGGA--CCATCT--G-C------C-GT-CA-A---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTT---CGCA--AAACGA-A-AGAATG-------CA-AG-TTT--T-AAA--AAAAA---CCC-AA--CACC-TG-G-TCATAAA----ATA----TTTTTGG-TA-AGTAAATTGTCTCAGATAAATCGTATAGTGG-TCA-T-TTAAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G--TTTTACCAAG-CAA------TTGACATTCGCAT-AATGTGTAAATTAGTAGAATTCGTGCG--AAgtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|11 : A-T-TTCAAAGTAAAATATATCAAAT---TT-AGTACC-TTT------TTTGAGATT-G-TTTTTACCAAG-CAA------TAGATTTTCGCAT-AATGCGTTAATTAGCAGAATTCGTGCG--AAC-AGTA-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|11 : TCACC-CTTGGCAAATATAGC--CG------TCAAAATG-AAAACA-TT--AATGAAG--CCATCT--GATTGGTTGC-GT-CG-C---TTAC-T--GTTCGCACG-A------ATTCTGCTAA--TTAA---CGCATTATGCGA-A---AATC-------TATTG-CTTGGT-AAA--AACAATCTCAA-AA---A---AG-G-TACTAAATTTGATA-TATTTTtttcattttgacggctatatttgccaagggtgaa
gi|12 : atttcaaagtAAAGTAAAATAT--CGAAT---TG-CT--CG-TTTCAACGGTTTGNNNNN-N-NNNNNNNNNNN-NNN------NNNNN----GCAT-AATGTGTTAATTAG--GAATTCGTACG--A-C-AGTG-AGCGAGCGCAACCAATCAGA-G-GCGTTC-ATTAATGTa
gi|13 : ACCGCTTGGCAGATATAGC--C-------GCAAAATGAAAAACTGTT-GAGTGGCG---CATCT--G-T------T--T-CA-T----AAC-TA-AGTTACA-G-A------C----ACTAA--TGTA-----CA--AAACAATA-AGAATA-------CA-TG-TTT--T-TAA--tttcatctgccagggtgaa
gi|14 : ttcaaATATAGC--C---------AAAATG-AAA-CT-TG-AAGGACCG--CACTCT--G-T------C-GC-CA-TTACAAA--T--A-TTACA-GGA------A----ACTA---TGT----CGCA--AGACGA-A-----TA--------A-CA-TTT--T-AAA--AAAAC---CAA-
gi|16 : AA--AAAAA---CAA-----CACC-AG-G-TCTTGAA----ATA-TATATTTTTG-TA-AGTAAATCGTCTAAGATTAATCc
gi|17 : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACA-TT-AA
gi|2 : tTCACC-CTTGGCAGACATAGCAACGAAAAATGAAAAATG-AAAACT-TT-AGTTGGCGGTCAATCT--G-T------TAGT-CA-T---AAACCT--AGTTACA-G-A------A----ACTAAA-TGTAG--CGCA--AAACGA-ATAGAATA-------CA-CG-TTT--T-GAAGAAAAAA---CGC-CA--CACCGAG-G-TCTTAAA----ATA-TATTTTTTGG-TA-AGTAAATCGTCTATGATAAATCGTATTATAG-TCA-A-TTCAAACTAAAATATGTCAAAT---CT-ATTACC-TTT------TATAAAATT-G-TTTTTAACAAG-CAA------TTGATTTTCGCAT-AATGAATCAATTAGTAGAATTCTTGCG--AAA-AGTG-ATCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|2 : TCACC-CTTGGCAGACATAGC--CG------GGAAAATG-AAAACA-TT--AATGAAG--CCATCT--G-tttcattttcccggctatgtctgccaagggtgaa
gi|3 : tcacccttggcagacatagcaacgaaaaatgaaaaatgaaaactttagttggcggtcaatctgttagtcataaacctagttacagaaactaaatgtagcgcaaaacgaatagaatacacgttttgaagaaaaaacgccacaccgaggtcttaaaatatattttttggtaagtaaatcgtctatgataaatcgtattatagtcaattcaaactaaaatatgtcaaatctattaccttttataaaattgtttttaacaagcaattgattttcgcataatgaatcaattagtagaattcttgcgaaaagtgatcgacgcaaccaatTCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-T---------------TCT--G-T------C-GT-CA-T---AAAC-T--AGTTACC-A-ATTTTTTA----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAC---C-------CACC-AGCGTTCTTAA-------A-TTTTTTTTTG-TA-TGTAAATCGTCTAAGATAAATCGTATCATAG-TAA-T-TTCAAAGTAAAATATATCAAAT---TG-ATTACCTTTT------TTTGAAATT-GTTTTTTACCAAG-CAA------TTGATTTTCGC-T-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTa
gi|4 : ----ATA-TGTTCTTTAGATA-TATAATTCGA--AAGATGG---GTATCATAGGTCAATATTCAA-GTAAATT---TCAAAT---TTTATTACC-TTT------TTTGGAATTGG-TTTTTACAGAGACAACTGGATTTGATTTTCGCAT-Attcatctgccaagggtgaa
gi|4 : CGTGCGGAAACGAGTGGAGCAA-CGCAACCAATCAGATG-GC-TTCGATT-ATGTgaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcataccgtgcggaaacgagtggagcaacgcaaccaatcagatggcttcgattatgttatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|5 : atatgttctttagatatataattcgaaagatgggtatcataggtcaatattcaagtaaatttcaaattttattaccttttttggaattggtttttacagagacaactggatttgattttcgcatagaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcatacTCACC-CTTGGCAGACATAGC--CG------GCAAAATG-AAAATT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--TGAAA--AAAAA---CAA-AAAACACC-AG-G-TCTTAAA----ATA-TATTTTTTAG-TA-AGTAAATCGTCTAAGATAAATCATATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---CT-ATTACC-TTT------TTTGAAATT-G-TTTTTATCAAG-CAA------TTGATTTTCACAT-AATGCGTCAATTAGTAGAATTTGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTtatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|6 : G------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-G------A----ACTA----------CGCA--AAACGA-A-AGAATA-------CA-CG-TT-----AAA--AAAAA---CAA-----CACC-AG-G-TCTT-AA----ATATTTTTTTTTTG-TA-AGAAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAATCTATT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGTGTTAAT---TAGAATTCGTACG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|7 : cttGGCAGATATAGT--CG------ACACAATG-AAAACT-TT-GAGTAGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTA---CGCA--AAACG------------------------TT--T-AAA--AAAAC---CAACAA--CACC-AG-G-TCTTGAA----TT--TTTTTTTTCG-TA-AGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCCCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATG-GC-TTT-ATTAATGTtttcatctgccaagggtgaa
gi|8 : -CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TTCGAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATAGATTATACA-CG-TTT--T-AAA--AAA-----CAA-----CACC-AG-G-TCTTAAA----ATA-TTTTTTTT-G-TA-AGTAAATCGTCGAAGATAAATCGTAATATAG-TCA-T-TTCAAAGTAAAATATAACAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACTATG-CAA------TTGATTTTCGCAT-AATGCGTCAtt
gi|9 : ttcacccttcagg-AAAATT-TC-GAG----A--CCATGTACG-T------CCGTTCAGT---AAAC-TTGAGTTACATG-A------C----ACTAGAGTGTAATTCGTC--ATAT---A-AGG-------------CG-TTT----AAA--ATAAATC-CAACAA--CACA-AG-G-TCTTGAAT---AT--TTTTTTTTCG-TGTAGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAA----TT-ATTACC-TTT------TTTGAAA-T-G-TTTTTACCAAG-CAA------TTGATTTTCCCATAAATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATGTGC-TTT-ATgagcgaatcttacgag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGACTAAACCATTTT
Unaligned ( gi|18 ): TGAAAGAGAAACACCATGTGTCGTCACCCTTGTCAAGC
Alignments
lowQualScore : 11111111111 111 1111111 111 22222 1111
lowQualScore : 4 44 888888 2 2 55 44 44 3 99999999 3 3 666 3 88 7 3 77777777777 999 000 55 3 55 0000000 3 3 5555 77 000 66666 3 3 3 0000 44 2 4 3 3 4 3 3 555 3 3 999999 3 3 3 999999 3 55 4 4 4 0 4 4 4
lowQualScore : . .. ...... . . .. .. .. . ........ . . ... . .. . . ........... ... ... .. . .. ....... . . .... .. ... ..... . . . .... .. . . . . . . . ... . . ...... . . . ...... . .. . . . . . . .
lowQualScore : 0 66 888888 9 9 22 22 22 1 88888888 6 6 444 6 66 3 6 99999999999 999 000 00 6 77 8888888 3 3 0000 33 444 88888 6 6 6 4444 77 2 5 6 6 0 6 6 888 3 3 666666 3 3 3 666666 3 00 0 0 0 8 0 0 0
consensus : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
Reference ( family-3062 ) : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|1 : ACC-CTTGGTAGATATAGC--CG------GCAAAATG-AAAACT-TT-GGGTGGCG--CCATCT--G-T------
gi|1 : A-------CA-CGCTTT--T-AAAG-AAAAA---CAA-----CACC-AG-G-TCTTAAA----TTT-TTCTTTTTA---A-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAA---TATCAAAT---TT-ATTACC-GTT------TT-AAAATT-G-TTTTTAC------AA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCGATCAGATG-GC-TTC-ACTAATGtacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacgcttttaaagaaaaacaacaccaggtcttaaatttttctttttaaagtaaatcgtctaagataaatcgtatcatagtcatttcaaagtaaatatcaaatttattaccgttttaaaattgtttttacaattgattttcgcataatgcgtcaattagtagaattcgtgcgaacagtgagcgacgcaaccgatcagatggcttcactaatggtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|10 : acccttggtagatatagccggcaaaatgaaaactttgggtggcgccatctgttacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCACC-CTTGGCAGATATAAC--CG------GCAAAATG-AAAACT-TT-GAGCAGGA--CCATCT--G-C------C-GT-CA-A---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTT---CGCA--AAACGA-A-AGAATG-------CA-AG-TTT--T-AAA--AAAAA---CCC-AA--CACC-TG-G-TCATAAA----ATA----TTTTTGG-TA-AGTAAATTGTCTCAGATAAATCGTATAGTGG-TCA-T-TTAAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G--TTTTACCAAG-CAA------TTGACATTCGCAT-AATGTGTAAATTAGTAGAATTCGTGCG--AAgtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|11 : A-T-TTCAAAGTAAAATATATCAAAT---TT-AGTACC-TTT------TTTGAGATT-G-TTTTTACCAAG-CAA------TAGATTTTCGCAT-AATGCGTTAATTAGCAGAATTCGTGCG--AAC-AGTA-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|11 : TCACC-CTTGGCAAATATAGC--CG------TCAAAATG-AAAACA-TT--AATGAAG--CCATCT--GATTGGTTGC-GT-CG-C---TTAC-T--GTTCGCACG-A------ATTCTGCTAA--TTAA---CGCATTATGCGA-A---AATC-------TATTG-CTTGGT-AAA--AACAATCTCAA-AA---A---AG-G-TACTAAATTTGATA-TATTTTtttcattttgacggctatatttgccaagggtgaa
gi|12 : atttcaaagtAAAGTAAAATAT--CGAAT---TG-CT--CG-TTTCAACGGTTTGNNNNN-N-NNNNNNNNNNN-NNN------NNNNN----GCAT-AATGTGTTAATTAG--GAATTCGTACG--A-C-AGTG-AGCGAGCGCAACCAATCAGA-G-GCGTTC-ATTAATGTa
gi|13 : ACCGCTTGGCAGATATAGC--C-------GCAAAATGAAAAACTGTT-GAGTGGCG---CATCT--G-T------T--T-CA-T----AAC-TA-AGTTACA-G-A------C----ACTAA--TGTA-----CA--AAACAATA-AGAATA-------CA-TG-TTT--T-TAA--tttcatctgccagggtgaa
gi|14 : ttcaaATATAGC--C---------AAAATG-AAA-CT-TG-AAGGACCG--CACTCT--G-T------C-GC-CA-TTACAAA--T--A-TTACA-GGA------A----ACTA---TGT----CGCA--AGACGA-A-----TA--------A-CA-TTT--T-AAA--AAAAC---CAA-
gi|16 : AA--AAAAA---CAA-----CACC-AG-G-TCTTGAA----ATA-TATATTTTTG-TA-AGTAAATCGTCTAAGATTAATCc
gi|17 : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACA-TT-AA
gi|2 : tTCACC-CTTGGCAGACATAGCAACGAAAAATGAAAAATG-AAAACT-TT-AGTTGGCGGTCAATCT--G-T------TAGT-CA-T---AAACCT--AGTTACA-G-A------A----ACTAAA-TGTAG--CGCA--AAACGA-ATAGAATA-------CA-CG-TTT--T-GAAGAAAAAA---CGC-CA--CACCGAG-G-TCTTAAA----ATA-TATTTTTTGG-TA-AGTAAATCGTCTATGATAAATCGTATTATAG-TCA-A-TTCAAACTAAAATATGTCAAAT---CT-ATTACC-TTT------TATAAAATT-G-TTTTTAACAAG-CAA------TTGATTTTCGCAT-AATGAATCAATTAGTAGAATTCTTGCG--AAA-AGTG-ATCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|2 : TCACC-CTTGGCAGACATAGC--CG------GGAAAATG-AAAACA-TT--AATGAAG--CCATCT--G-tttcattttcccggctatgtctgccaagggtgaa
gi|3 : tcacccttggcagacatagcaacgaaaaatgaaaaatgaaaactttagttggcggtcaatctgttagtcataaacctagttacagaaactaaatgtagcgcaaaacgaatagaatacacgttttgaagaaaaaacgccacaccgaggtcttaaaatatattttttggtaagtaaatcgtctatgataaatcgtattatagtcaattcaaactaaaatatgtcaaatctattaccttttataaaattgtttttaacaagcaattgattttcgcataatgaatcaattagtagaattcttgcgaaaagtgatcgacgcaaccaatTCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-T---------------TCT--G-T------C-GT-CA-T---AAAC-T--AGTTACC-A-ATTTTTTA----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAC---C-------CACC-AGCGTTCTTAA-------A-TTTTTTTTTG-TA-TGTAAATCGTCTAAGATAAATCGTATCATAG-TAA-T-TTCAAAGTAAAATATATCAAAT---TG-ATTACCTTTT------TTTGAAATT-GTTTTTTACCAAG-CAA------TTGATTTTCGC-T-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTa
gi|4 : ----ATA-TGTTCTTTAGATA-TATAATTCGA--AAGATGG---GTATCATAGGTCAATATTCAA-GTAAATT---TCAAAT---TTTATTACC-TTT------TTTGGAATTGG-TTTTTACAGAGACAACTGGATTTGATTTTCGCAT-Attcatctgccaagggtgaa
gi|4 : CGTGCGGAAACGAGTGGAGCAA-CGCAACCAATCAGATG-GC-TTCGATT-ATGTgaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcataccgtgcggaaacgagtggagcaacgcaaccaatcagatggcttcgattatgttatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|5 : atatgttctttagatatataattcgaaagatgggtatcataggtcaatattcaagtaaatttcaaattttattaccttttttggaattggtttttacagagacaactggatttgattttcgcatagaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcatacTCACC-CTTGGCAGACATAGC--CG------GCAAAATG-AAAATT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--TGAAA--AAAAA---CAA-AAAACACC-AG-G-TCTTAAA----ATA-TATTTTTTAG-TA-AGTAAATCGTCTAAGATAAATCATATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---CT-ATTACC-TTT------TTTGAAATT-G-TTTTTATCAAG-CAA------TTGATTTTCACAT-AATGCGTCAATTAGTAGAATTTGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTtatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|6 : G------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-G------A----ACTA----------CGCA--AAACGA-A-AGAATA-------CA-CG-TT-----AAA--AAAAA---CAA-----CACC-AG-G-TCTT-AA----ATATTTTTTTTTTG-TA-AGAAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAATCTATT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGTGTTAAT---TAGAATTCGTACG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|7 : cttGGCAGATATAGT--CG------ACACAATG-AAAACT-TT-GAGTAGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTA---CGCA--AAACG------------------------TT--T-AAA--AAAAC---CAACAA--CACC-AG-G-TCTTGAA----TT--TTTTTTTTCG-TA-AGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCCCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATG-GC-TTT-ATTAATGTtttcatctgccaagggtgaa
gi|8 : -CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TTCGAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATAGATTATACA-CG-TTT--T-AAA--AAA-----CAA-----CACC-AG-G-TCTTAAA----ATA-TTTTTTTT-G-TA-AGTAAATCGTCGAAGATAAATCGTAATATAG-TCA-T-TTCAAAGTAAAATATAACAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACTATG-CAA------TTGATTTTCGCAT-AATGCGTCAtt
gi|9 : ttcacccttcagg-AAAATT-TC-GAG----A--CCATGTACG-T------CCGTTCAGT---AAAC-TTGAGTTACATG-A------C----ACTAGAGTGTAATTCGTC--ATAT---A-AGG-------------CG-TTT----AAA--ATAAATC-CAACAA--CACA-AG-G-TCTTGAAT---AT--TTTTTTTTCG-TGTAGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAA----TT-ATTACC-TTT------TTTGAAA-T-G-TTTTTACCAAG-CAA------TTGATTTTCCCATAAATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATGTGC-TTT-ATgagcgaatcttacgag
blockSeqs : G AA AAAAAT A G CG GT AC A TGGTTGC T G TAC C TG C G TTTTTTA GAG ATT TT T TA GATTATA T . GGT GA TCT AAAA G C T TTTG AT A G A T G A A CTA T T CAACGG G T A CTGGAT A GA G G G T G G
blockSeqs : . . . . . G . . . TA . . . . A T . ATTCT AA G . . A . . . TG . TC CAA . . . T A A T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . CC . . . . . . . C A . . . A . . . T . . CAA . . . . A A G . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . A A . . . A . . . T . . AA . . . . A T T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . C . . . . . . . A A . . . A . . . T . . AA . . . . A G A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . C . . . . . . . A A . . . A . . . T . . CA . . . . A A A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . C . . . . . . . A A . . . A . . . T . . . . . . . A T T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . C . . . . . . . C A . . . . . . . T . . . . . . . A T C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . C . . . . . . . A . . . . . . . . T . . . . . . . A T C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . G . . . C . . . . . . . C . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : **
originalCons : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
finalCons : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGACTAAACCATTTT
Unaligned ( gi|18 ): TGAAAGAGAAACACCATGTGTCGTCACCCTTGTCAAGC
Alignments
lowQualScore : 11111111111 111 1111111 111 22222 1111
lowQualScore : 4 44 888888 2 2 55 44 44 3 99999999 3 3 666 3 88 7 3 77777777777 999 000 55 3 55 0000000 3 3 5555 77 000 66666 3 3 3 0000 44 2 4 3 3 4 3 3 555 3 3 999999 3 3 3 999999 3 55 4 4 4 0 4 4 4
lowQualScore : . .. ...... . . .. .. .. . ........ . . ... . .. . . ........... ... ... .. . .. ....... . . .... .. ... ..... . . . .... .. . . . . . . . ... . . ...... . . . ...... . .. . . . . . . .
lowQualScore : 0 66 888888 9 9 22 22 22 1 88888888 6 6 444 6 66 3 6 99999999999 999 000 00 6 77 8888888 3 3 0000 33 444 88888 6 6 6 4444 77 2 5 6 6 0 6 6 888 3 3 666666 3 3 3 666666 3 00 0 0 0 8 0 0 0
consensus : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
Reference ( family-3062 ) : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAA---CAA-AA--CACC-AG-G-TCTTAAA----ATA-TNTTTTTTNG-TA-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|1 : ACC-CTTGGTAGATATAGC--CG------GCAAAATG-AAAACT-TT-GGGTGGCG--CCATCT--G-T------
gi|1 : A-------CA-CGCTTT--T-AAAG-AAAAA---CAA-----CACC-AG-G-TCTTAAA----TTT-TTCTTTTTA---A-AGTAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAA---TATCAAAT---TT-ATTACC-GTT------TT-AAAATT-G-TTTTTAC------AA------TTGATTTTCGCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCGATCAGATG-GC-TTC-ACTAATGtacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacgcttttaaagaaaaacaacaccaggtcttaaatttttctttttaaagtaaatcgtctaagataaatcgtatcatagtcatttcaaagtaaatatcaaatttattaccgttttaaaattgtttttacaattgattttcgcataatgcgtcaattagtagaattcgtgcgaacagtgagcgacgcaaccgatcagatggcttcactaatggtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|10 : acccttggtagatatagccggcaaaatgaaaactttgggtggcgccatctgttacgttgcatctgttgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCACC-CTTGGCAGATATAAC--CG------GCAAAATG-AAAACT-TT-GAGCAGGA--CCATCT--G-C------C-GT-CA-A---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTT---CGCA--AAACGA-A-AGAATG-------CA-AG-TTT--T-AAA--AAAAA---CCC-AA--CACC-TG-G-TCATAAA----ATA----TTTTTGG-TA-AGTAAATTGTCTCAGATAAATCGTATAGTGG-TCA-T-TTAAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G--TTTTACCAAG-CAA------TTGACATTCGCAT-AATGTGTAAATTAGTAGAATTCGTGCG--AAgtttgattttgccggctatatctgccaagggtgaaagagaaacaccgtgtattgtcacccttgtagtcgctgtttagtttctgactacaagcatttt
gi|11 : A-T-TTCAAAGTAAAATATATCAAAT---TT-AGTACC-TTT------TTTGAGATT-G-TTTTTACCAAG-CAA------TAGATTTTCGCAT-AATGCGTTAATTAGCAGAATTCGTGCG--AAC-AGTA-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|11 : TCACC-CTTGGCAAATATAGC--CG------TCAAAATG-AAAACA-TT--AATGAAG--CCATCT--GATTGGTTGC-GT-CG-C---TTAC-T--GTTCGCACG-A------ATTCTGCTAA--TTAA---CGCATTATGCGA-A---AATC-------TATTG-CTTGGT-AAA--AACAATCTCAA-AA---A---AG-G-TACTAAATTTGATA-TATTTTtttcattttgacggctatatttgccaagggtgaa
gi|12 : atttcaaagtAAAGTAAAATAT--CGAAT---TG-CT--CG-TTTCAACGGTTTGNNNNN-N-NNNNNNNNNNN-NNN------NNNNN----GCAT-AATGTGTTAATTAG--GAATTCGTACG--A-C-AGTG-AGCGAGCGCAACCAATCAGA-G-GCGTTC-ATTAATGTa
gi|13 : ACCGCTTGGCAGATATAGC--C-------GCAAAATGAAAAACTGTT-GAGTGGCG---CATCT--G-T------T--T-CA-T----AAC-TA-AGTTACA-G-A------C----ACTAA--TGTA-----CA--AAACAATA-AGAATA-------CA-TG-TTT--T-TAA--tttcatctgccagggtgaa
gi|14 : ttcaaATATAGC--C---------AAAATG-AAA-CT-TG-AAGGACCG--CACTCT--G-T------C-GC-CA-TTACAAA--T--A-TTACA-GGA------A----ACTA---TGT----CGCA--AGACGA-A-----TA--------A-CA-TTT--T-AAA--AAAAC---CAA-
gi|16 : AA--AAAAA---CAA-----CACC-AG-G-TCTTGAA----ATA-TATATTTTTG-TA-AGTAAATCGTCTAAGATTAATCc
gi|17 : TCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACA-TT-AA
gi|2 : tTCACC-CTTGGCAGACATAGCAACGAAAAATGAAAAATG-AAAACT-TT-AGTTGGCGGTCAATCT--G-T------TAGT-CA-T---AAACCT--AGTTACA-G-A------A----ACTAAA-TGTAG--CGCA--AAACGA-ATAGAATA-------CA-CG-TTT--T-GAAGAAAAAA---CGC-CA--CACCGAG-G-TCTTAAA----ATA-TATTTTTTGG-TA-AGTAAATCGTCTATGATAAATCGTATTATAG-TCA-A-TTCAAACTAAAATATGTCAAAT---CT-ATTACC-TTT------TATAAAATT-G-TTTTTAACAAG-CAA------TTGATTTTCGCAT-AATGAATCAATTAGTAGAATTCTTGCG--AAA-AGTG-ATCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|2 : TCACC-CTTGGCAGACATAGC--CG------GGAAAATG-AAAACA-TT--AATGAAG--CCATCT--G-tttcattttcccggctatgtctgccaagggtgaa
gi|3 : tcacccttggcagacatagcaacgaaaaatgaaaaatgaaaactttagttggcggtcaatctgttagtcataaacctagttacagaaactaaatgtagcgcaaaacgaatagaatacacgttttgaagaaaaaacgccacaccgaggtcttaaaatatattttttggtaagtaaatcgtctatgataaatcgtattatagtcaattcaaactaaaatatgtcaaatctattaccttttataaaattgtttttaacaagcaattgattttcgcataatgaatcaattagtagaattcttgcgaaaagtgatcgacgcaaccaatTCACC-CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-T---------------TCT--G-T------C-GT-CA-T---AAAC-T--AGTTACC-A-ATTTTTTA----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--T-AAA--AAAAC---C-------CACC-AGCGTTCTTAA-------A-TTTTTTTTTG-TA-TGTAAATCGTCTAAGATAAATCGTATCATAG-TAA-T-TTCAAAGTAAAATATATCAAAT---TG-ATTACCTTTT------TTTGAAATT-GTTTTTTACCAAG-CAA------TTGATTTTCGC-T-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTa
gi|4 : ----ATA-TGTTCTTTAGATA-TATAATTCGA--AAGATGG---GTATCATAGGTCAATATTCAA-GTAAATT---TCAAAT---TTTATTACC-TTT------TTTGGAATTGG-TTTTTACAGAGACAACTGGATTTGATTTTCGCAT-Attcatctgccaagggtgaa
gi|4 : CGTGCGGAAACGAGTGGAGCAA-CGCAACCAATCAGATG-GC-TTCGATT-ATGTgaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcataccgtgcggaaacgagtggagcaacgcaaccaatcagatggcttcgattatgttatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|5 : atatgttctttagatatataattcgaaagatgggtatcataggtcaatattcaagtaaatttcaaattttattaccttttttggaattggtttttacagagacaactggatttgattttcgcatagaatggaaacttcgagtgtaaaaagcgagaataaacatttgaaatcaggtgttatctacgcagagatttcatacTCACC-CTTGGCAGACATAGC--CG------GCAAAATG-AAAATT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATA-------CA-CG-TTT--TGAAA--AAAAA---CAA-AAAACACC-AG-G-TCTTAAA----ATA-TATTTTTTAG-TA-AGTAAATCGTCTAAGATAAATCATATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---CT-ATTACC-TTT------TTTGAAATT-G-TTTTTATCAAG-CAA------TTGATTTTCACAT-AATGCGTCAATTAGTAGAATTTGTGCG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGTtatattatcattgcccagtgcctcgcgtgataaatattctgggccacagggtgaaaagacgaaaaccccgagtgtatcatcac
gi|6 : G------GCAAAATG-AAAACT-TT-GAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-G------A----ACTA----------CGCA--AAACGA-A-AGAATA-------CA-CG-TT-----AAA--AAAAA---CAA-----CACC-AG-G-TCTT-AA----ATATTTTTTTTTTG-TA-AGAAAATCGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAATCTATT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCGCAT-AATGTGTTAAT---TAGAATTCGTACG--AAC-AGTG-AGCGA-CGCAACCAATCAGATG-GC-TTC-ATTAATGT
gi|7 : cttGGCAGATATAGT--CG------ACACAATG-AAAACT-TT-GAGTAGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------C----ACTAA--TGTA---CGCA--AAACG------------------------TT--T-AAA--AAAAC---CAACAA--CACC-AG-G-TCTTGAA----TT--TTTTTTTTCG-TA-AGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACCAAG-CAA------TTGATTTTCCCAT-AATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATG-GC-TTT-ATTAATGTtttcatctgccaagggtgaa
gi|8 : -CTTGGCAGATATAGC--CG------GCAAAATG-AAAACT-TTCGAGTGGCG--CCATCT--G-T------C-GT-CA-T---AAAC-T--AGTTACA-G-A------A----ACTAA--TGTA---CGCA--AAACGA-A-AGAATAGATTATACA-CG-TTT--T-AAA--AAA-----CAA-----CACC-AG-G-TCTTAAA----ATA-TTTTTTTT-G-TA-AGTAAATCGTCGAAGATAAATCGTAATATAG-TCA-T-TTCAAAGTAAAATATAACAAAT---TT-ATTACC-TTT------TTTGAAATT-G-TTTTTACTATG-CAA------TTGATTTTCGCAT-AATGCGTCAtt
gi|9 : ttcacccttcagg-AAAATT-TC-GAG----A--CCATGTACG-T------CCGTTCAGT---AAAC-TTGAGTTACATG-A------C----ACTAGAGTGTAATTCGTC--ATAT---A-AGG-------------CG-TTT----AAA--ATAAATC-CAACAA--CACA-AG-G-TCTTGAAT---AT--TTTTTTTTCG-TGTAGTAAATTGTCTAAGATAAATCGTATCATAG-TCA-T-TTCAAAGTAAAATATATCAAA----TT-ATTACC-TTT------TTTGAAA-T-G-TTTTTACCAAG-CAA------TTGATTTTCCCATAAATGCGTCAATTAGTAGAATTCGTGCG--AAC-AGTG-AGCGA-CGCAACCAG-CAGATGTGC-TTT-ATgagcgaatcttacgag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAGACTAAACCATTTT
Unaligned ( gi|18 ): TGAAAGAGAAACACCATGTGTCGTCACCCTTGTCAAGC