lowQualScore : 7777777777777777777 111111111111111111 22222222222222222222222222222222 222222 11111 3333333333333333333333333 22222222 22 222
lowQualScore : 66 666 0 4 66 4 1 5555555555555555555 3 3 444444444444444444 4 99999999999999999999999999999999 4 888 3 6 777 4 9999 333333 4 11111 0 9999 4444444444444444444444444 3 66 7 44444444 9 1 2 77 000 6
lowQualScore : .. ... . . .. . . ................... . . .................. . ................................ . ... . . ... . .... ...... . ..... . .... ......................... . .. . ........ . . . .. ... .
lowQualScore : 11 999 8 4 77 2 9 0000000000000000000 6 3 444444444444444444 0 88888888888888888888888888888888 4 000 1 4 444 0 4444 777777 4 11111 6 4444 6666666666666666666666666 4 11 5 22222222 0 7 2 55 555 0
consensus : AAATTAAAA--T--TCATAC-ATCTTGCAATCTTTT-GTTGTA-A---T--GT-AATT-TTGACA----TTAGAATTT---CTT-TTC--------------TTT---ATAC-AGA---AAC-AAT-GGCCGAAACATTATTGTATGGA-AGTAAAT----AATTCA-T----T-G-----CGGAGAA----ATTTTA--CA---T-CA---------ATTTTC--ATATTT--------TTTTAACACATTCCAGCATTTTAATCACGGTTCAGACTAAAATGCCNCTTTAAGGTACT
Reference ( gi|6 ) : AAATTAAAA--T--TCATAC-ATCTTGCAGTCTTTTTGCTGTACA---T--GA-AATT-TTGATA----TTAGAATCT---CCT-TTC--------------TTT---ATAC-AGC---AAC-AGT-GGCTGAAATATTATTGTATGGA-AGTAAAT----AATTCA-A----T-G-----CAGAGAA----ATTGTA--CA---T-CA---------ACTCTC--ATATTT--------TTTTAATGCATTCCAGCATTTCAATCACAGTTCAGACT--AATGTCCCTTTAAGATATT
gi|19 : AAATTTAAAGTT--TCATAC-ATCATGCAATCTTTTTGTTG-------------AATTATCGACA----TAAG-ATTT---CTTCTTC--------------CTT---CTAT-AGA---AAC-AA--AACTGAAATATTATTGTAGGTAGAGTAA
gi|1 : actgacATCAAAA--TGACCACAA-AC--TGCAATCTTTT----GTACA---TTTGT-AATA-CTGACAAGCCTTAGAATTC---CTT-TTG--------------TTT---ATAA-AGG---AAC-AAT-TGCTGAAACATCATTATATGGG-AGTAAAT----CATTCA-T----T-G-----CAGAGAA----ATTTTA--TA---T--A---------TCTTTC--ATA
gi|7 : caaggagcactagctgccaactgttactgaatgattggaagagatttacagtccATTAAAA--T-------C-AT--TACAGACTTATAGTTTTACA---T----------TTGATG----ATGTAATAT-------TTT--------------GTT---GTACTA-----AAC-AAT-GACCAAAACATT-TTGCATGGA-AGTAAAC----AATTTT-G----TCG-----CAGAGAA----ATTTTA--CA-----AA---------ATTTTC--ATAaaatttaatcggaaggatgccttttttttttttttcattctcacatatttttttttcaaatttcactttttaaatacattccagtatttcaatcagaaataaaaagttttacatcctacaagacagctaatgtccctttcataacttttgagtatatttcctgttgataaacaa
gi|4 : agcaacattaagtttgccaattattaataaaacatacaactttgcatcacATTAAAA--T--TCATTC-ATCATACAATC-TTCTGTTGT----------A-AGTT-TT-CCA----TTAGAAATT---CTT-TTG--------------ATT---ATAC-AG----AGC-AAT-GACAGAAACATCG-TGT----C-AGTATAC----AACTCA-T----T-G-----TGGCAAA----ATTTTA--CA---aaattcaaaaggcgatgcactcgtttt
gi|2 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatATTAAAA--T--G-ATAC-ACCCTGCAACCTTT-----ATAAA---TTTGT-AAAT-TTAACG----T--AAATTT---CTT-TAG--------------CTT---ATAA-AGA---AAC-AAT-GGCAGAATCATTAATGTCAGGA-AGTAAAT----CTTTTACA----T-GATATTCACAG-A----ATTTTT--TA---T-CA---------AAGGTC--ACA------------TTTAAT---T-------TTTCAACCATAGTTCAGAcacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttcttttttttttctttgacactttccagcattttaatcataattcagaattgaaaattttttgcattcta
gi|9 : tgactctgatcattgatttatgttactgctggcaaataagtgttttaacggacattaagctgccaaaatcatattaattgtttatcaccaaaatgactaaaacagctttacatttacatgaaaatcactaacatATTAAAA--T--TCATAC-ATCTTGCAATA-TTTCGTTGT-CATTTT--GACAATT-TTGGTattagtttttactcttaatgctatttgacagctaatgcccatt
gi|17 : cataagacttccaaaagaaaacaggttttaaagtggtagtacaatgtacatgtagcagtcaaaagtattcgatacaaaatgactaaaacagcttcacagtacataaaaacaccaatgtcatATTACAT--T--TCA-ACGATCTTACAATCTT----CTGT------T--GT-AATT-TTGACA----TTTGCATTT---CTT-CTC--------------TTT---ATAC-ttgtt
gi|12 : atttattggagtgtcatcacaaagtaaagatacagtacataaacatccctgctgacatTAAAA--T--TCATAC-ATTTGGCAATATATT-GTTGTA------------ATT-TTGACA----TTA----------TT-TTC--------------GCC----TAC-AGA---AAC-AAT-GACCGAAACATTACAGTATGGA-AATAAAT----AATTCG-ATCATT-G-----TGGAGAG----ATCTTA--CA---
gi|5 : atcaccactaatacagA--T--TCTTAT-TTCTTGCAATCTTTT-GTTGTA------------ATT-TTGACA----TTA--ATTTTTTCCT-TTCCTTTTTTTTTTTTTTTT---TTCC-TGTTAAAACCAAA-GGTTGAAACATT---GTATGGA-AGTATAT----AATTCA-T----T-G-----CTGAAAATTCGATTAGA--GG---T-CACCTTTTTTCATTCTCAGATATTTTCTTCCTCTTTTAACATATTCCGGCATTTTTATCACGGTGAAAATTAAAATGTTA--TTAAGGTACcatgtgtaataaaattaaatca
gi|15 : aattc---T--GT-AATT-TTGACA----TCAAAATTT---CTT-TTC--------------TTTTAAATCT-AGA---AGC-AAT-GGCTGAACCATGATTGTATG----ATATATGTGCAATACA-T----T-G-----TAGAGAA----ATTCTA--CA---TACACTTG-----ATTTTC--ATAatagtcgacagttaacgcccccttaacacctgataagtgcattt
gi|8 : tATT-TTGACA----TAGGAATTT---CTT-TTG--------------TTT---ACAT-A-C---A-T-AGTTGGCCGAAA-ATTATCTTATGGA-AGCAAAT----GATTCA-C----T-G-----GGGATAA----AGTTTA--C----T-TA---------GTTTTC--ATAaaattcaatgaaag
gi|10 : tcGCGGAAATAATTTAGCATGGA-GGTAAAT----GATTCA-T----T-G-----CGGAGCA----ATTCTATTCAAATT-TA---------ATTTTC--CTCATT--------TTCTAGCACATCCAAGCATTTTATTCACGGTTCAGAaaattcgattggaaatcgtcttcatcactgtcaagttttttttcttcatttttcagcgcattttagtattctaataagttttcctggttgacaattaatgc
gi|1 : aacactgatatacatgtatcatgcaatcttaagctttgtactaattcattttatctagagtaaaataat---T-CA---------AATTTC--AC--TT--------TTTAAATACATTCCAGTATTTCAATCA
gi|13 : caaggagcactagctgccaactgttactgaatgattggaagagatttacagtccatcaaaatgaccacaaactgcaatcttttgtacatttgtaatactgacaagccttagaattccttttgtttataaaggaacaattgctgaaacatcattatatgggagtaaatcattcattgcagagaaattttatatatctttcataaaatttaatcggaaggatgccttttttttttttttcattctcacatatttttttt---------ATTCTC--AGATTT--------C---AATGTATTCCAGTATTTAAATCACAATTAAGAgaaataaaaagttttacatcctacaagacagctaatgtccctttcataacttttgagtatatttcctgttgataaacaa
gi|4 : cttcattgtattatagaagtaaatcatcaattgcagatacatttcattttaatgtcacaaaatttgatggaaggtcactctatttcTTT--------CTTTGACACTTTCCAGCATTTTAATCATAATTCAGAattttttaaaatgacatcttatcagac
gi|3 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatattaaaattcattcatcatacaatcttctgttgtaagttttccattagaaattcttttgattatacagagcaatgacagaaacatcgtgtcagtatacaactcattgtggcaaaattttacacacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttctttttttCAG-CT--AATGCCCCTTTAAGATattgaaaattttttgcattcta
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AAAAGCAATCATTAAAGGAACATATAGCTTTAAAAGCCATGTTTGTGGACTGTTTTCAAAATGACTAAAATAGAATTACAGTATATGAAAATCACCACTGACATATTAAAATTAATCCTTTGTTGCTATTTTCTTGGGTTTCTCTAGAAACAATGGCCGAAATGCACAT
Unaligned ( gi|14 ): ATTGCCAAAGTTACAATTAAATGTTTGCCAATTATTACCAAAATGACTAAAACAGCTTTTCATTACACAAGACCTACTGACATTTGAAACATCATTCAAACTTTTTGTCGTCATTCTGACATAAAGTCTCAACTGTTTATATATGGTAGA
Unaligned ( gi|16 ): GGTTTTGAATCATTAATGTATATTAATTTTGACAGACACAGTCAAAGAGGCCATAGCTGCCAAAGTCATACATATCAGTAATTACTGGAAATGACTAAAAACAGCTTTACAGTGTGATATATGAAAA
Unaligned ( gi|18 ): ACATATACTGCTTATCGGTCAAAATCTTACATGTCCATTGGTACCAAAAAGACTAATACAGCTTTACAGTACATAAAGATCACCAATGGCATATAGAAATACATACATCTTGTAAT
Unaligned ( gi|20 ): GTCTTGTTTGTTGATTGGTACCAAAGTTCAAAATGACTAAAACGGATTTTATTAATGTACATGCATGTATAAAAGTCACCCTGACATATTAGATATTA
Unaligned ( gi|21 ): CCAATTTAGCTTCAATTGGTTTGTCGATTATTACTCAAATGACGGAAACGGCTTCACATTACA
Alignments
lowQualScore : 3333333333 111111111 22222222222222222 11111111111 111111 4444444444444444 111 22222222 1111 111 22222
lowQualScore : 66 66 4 0 4 4 3 0000000000 2 6666 888888888 33 88888888888888888 3 00000000000 3 1 000000 44 33 7777 55 7777 3 7777 88888 0 666 55 8888888888888888 4 55 222 00000000 99 4444 1 6 0 777 33333
lowQualScore : .. .. . . . . . .......... . .... ......... .. ................. . ........... . . ...... .. .. .... .. .... . .... ..... . ... .. ................ . .. ... ........ .. .... . . . ... .....
lowQualScore : 11 11 0 1 0 0 6 8888888888 9 1111 888888888 99 99999999999999999 0 11111111111 1 9 222222 66 77 7777 00 7777 6 7777 11111 5 444 00 6666666666666666 0 55 555 77777777 22 2222 0 7 2 000 00000
consensus : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--ATTT--CTT-----------------TTNTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
Reference ( family-305 ) : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--ATTT--CTT-----------------TTCTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGCCNCTTTAAGGTACT
gi|1 : ATCAAAA--TGACCACAA-AC--TGCAATC-TTTT-GTACATT------TGTAATA-CTGACAAGCCTTAG----A--ATTC--CTT-----------------TTGTTT---ATAA----AGGAACAAT-TGCTGAAACATCAT----TAT--ATGGG-AGTAAAT----CA--T----TC-AT----TGC----AGAGAAATT---TTA--TA---T------------ATCTTTC--AT---A
gi|10 : caaggagcactagctgccaactgttactgaatgattggaagagatttacagtcc-TGTATCA---TGCAATC-TTAAGC----TTTGTACTA--ATTC--ATT-----------------TTATCT---AGAG----TAAAATAAT-G-CGGAAATAATTT----AGC--ATGGA-GGTAAAT----GA--T----TC-AT----TGC----GGAGCAATT---CTATTCAAATT-TA---------AT-TTTC--CT---CATT--------TT--CTAG----CACATCCAAGCATTTTATTCACGGTTCAG-Aaaatttaatcggaaggatgccttttttttttttttcattctcacatatttttttttcaaatttcactttttaaatacattccagtatttcaatcagaaataaaaagttttacatcctacaagacagctaatgtccctttcataacttttgagtatatttcctgttgataaacaa
gi|11 : aacactgatatacaTTT--CTTGGGT-------------TTCTCT---A--------GAAACAAT-GGCCGAAA
gi|12 : aaaagcaatcattaaaggaacatatagctttaaaagccatgtttgtggactgttttcaaaatgactaaaatagaattacagtatatgaaaatcaccactgacatattaaaattaatcctttgttgctatTAAAA--T--TCATAC-ATTTGGCAATA-TATT-GT-TGTA--A---T-----T-TTGACA----TTA---------------TT-----------------TTCGCC----TAC----AGAAACAAT-GACCGAAACATTAC----AGT--ATGGA-AATAAAT----AA--TTCGATC-AT----TGT----GGAGAGATC---TTA--CA---tgcacat
gi|15 : atcaccactaatacag---TGTAATT-TTGACA----TCAA----A--ATTT--CTT-----------------TTCTTTTAAATCT----AGAAGCAAT-GGCTGAACCATGAT----TGT--ATG----ATATATGTGCAA--T----AC-AT----TGT----AGAGAAATT---CTA--CA---TACACTTG-----AT-TTTC--AT---Acatgtgtaataaaattaaatca
gi|17 : tATTACAT--T--TCA-ACGATCTTACAATC-TTCT-GT-TGTA----------ATT-TTGACA----TTTG----C--ATTT--CTT-----------------CTCTTT---ATAC----aaattcaatgaaag
gi|19 : atttattggagtgtcatcacaaagtaaagatacagtacataaacatccctgctgacatAAATTTAAAGTT--TCATAC-ATCATGCAATCTTTTT-GT-TG-----------AATTATCGACA----TAAG-------ATTT--CTTC----------------TTCCTT---CTAT----AGAAACAA--AACTGAAATATTAT----TGT--AGGTAGAGTAA
gi|2 : actgacATTAAAA--T--G-ATAC-ACCCTGCAACC-TTT------ATA--AATTTGTAAAT-TTAACG----T--A----A--ATTT--CTT-----------------TAGCTT---ATAA----AGAAACAAT-GGCAGAATCATTAA----TGT--CAGGA-AGTAAA--------------TC---------------------TT---TTA--CA---T--G---------AT-ATTC--ACAGAATTT--------TTTATCAAAGGTCACATT-TAATTTTTCAACCATAGTTCAG-A
gi|3 : tgactctgatcattgatttatgttactgctggcaaataagtgttttaacggacattaagctgccaaaatcatattaattgtttatcaccaaaatgactaaaacagctttacatttacatgaaaatcactaacatACAC-AACTTGTAATC-TTTT-GT-TGTA--A---T-----T-TTGACA----TT------------------------------------TGTTT---ATGG----AGAAACAAT-AGTCAAATCA-TATAAAATATAAATGG---GCACAT----AGTTT----TC-ATATAATGCGTTTGGAG-GATT---TT---C------------------T-CTTC---------TT--------TT--ATAT----CACTTTCCA-CA-TTTAATCATGCTTCGGAACT--AAAAattagtttttactcttaatgctatttgacagctaatgcccatt
gi|4 : caaaagtacgaatcttaaaggggcattagctggcaaggtcatgttatccaattattagcaaaatggctaaaacagctttaaagtatataaaaatcattactgatATTAAAA--T--TCATTC-ATCATACAATC-TTCT-GT-TGTA--A----GT--TT-TC--CA----TTAG----A--AATT--CTT-----------------TTGATT---ATAC----AG-AGCAAT-GACAGAAACATCG-----TGT------C-AGTATAC----AA--C----TC-AT----TGT----GGCAAAATT---TTA--CA-----CA---------CA-TTTG--ATAA-ATTT--------Taggtttacgtcttacctgatagcgaatgtcccttttaaagacattttctaaaaacaa
gi|4 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatTTT--------CT--TTGA----CACTTTCCAGCATTTTAATCATAATTCAG-AATTGAAAATgctaggagttttttctctctcaactgtctgctctttttttttttcttttttttttctttgacactttccagcattttaatcataattcagaattgaaaattttttgcattcta
gi|5 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatattaaaattcattcatcatacaatcttctgttgtaagttttccattagaaattcttttgattatacagagcaatgacagaaacatcgtgtcagtatacaactcattgtggcaaaattttacacacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttctttttttA--T--TCTTAT-TTCTTGCAATC-TTTT-GT-TGTA--A---T-----T-TTGACA----TTA--------ATTT--TTTCCTTTCCTTTTTTTTTTTTTTTT---TTCCTGTTAAAACCAAA-GGTTGAAACATT-------GT--ATGGA-AGTATAT----AA--T----TC-AT----TGC----TGA-AAATTCGATTA--GAGG-T-CACCTTTTTTCAT-TCTCAGAT---ATTTTCTTCCTCTT--TTAA----CATATTCCGGCATTTTTATCACGGTGAAA-ATT--AAAATGTTA--TTAAGGTACTtttttgcattcta
gi|6 : aattcAAATTAAAA--T--TCATAC-ATCTTGCAGTC-TTTTTGC-TGTAC-A---TGAAATT-TTGATA----TTAG----A--ATCT--CCT-----------------TTCTTT---ATAC----AGCAACAGT-GGCTGAAATATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AA----TGC----AGAGAAATT---GTA--CA---T-CA---------AC-TCTC--AT---ATTT--------TT--TTAA----TGCATTCCAGCATTTCAATCACAGTTCAG-ACT----AATGTCCCTTTAAGATATTatagtcgacagttaacgcccccttaacacctgataagtgcattt
gi|7 : ---TATAGTT-TT-ACA----TTTG----ATGATGTAATAT-----------------TTTGTT---GTAC-----TAAACAAT-GACCAAAACATT-T----TGC--ATGGA-AGTAAAC----AA--T----TTTGT----CGC----AGAGAAATT---TTA--CA-----AA---------AT-TTTC--AT---A
gi|8 : agcaacattaagtttgccaattattaataaaacatacaactttgcatcacattaaaatcattacagactATT-TTGACA----TAGG----A--ATTT--CTT-----------------TTGTTT---A--C----ATACATAGTTGGCCGAAA-ATTAT----CTT--ATGGA-AGCAAAT----GA--T----TC-AC----TGG----GGATAAAGT---TTA--C----T-TA---------GT-TTTC--AT---Aaaattcaaaaggcgatgcactcgtttt
gi|9 : tcATTAAAA--T--TCATAC-ATCTTGCAATA-TTTC-GT-----------TGTCATT-TTGACA----aaattcgattggaaatcgtcttcatcactgtcaagttttttttcttcatttttcagcgcattttagtattctaataagttttcctggttgacaattaatgc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTTCATTGTATTATAGAAGTAAATCATCAATTGCAGATACATTTCATTTTAATGTCACAAAATTTGATGGAAGGTCACTCTATTTCATTCTCAGATTTCAATGTATTCCAGTATTTAAATCACAATTAAGAATTTTTTAAAATGACATCTTATCAGAC
Unaligned ( gi|14 ): ATTGCCAAAGTTACAATTAAATGTTTGCCAATTATTACCAAAATGACTAAAACAGCTTTTCATTACACAAGACCTACTGACATTTGAAACATCATTCAAACTTTTTGTCGTCATTCTGACATAAAGTCTCAACTGTTTATATATGGTAGA
Unaligned ( gi|16 ): GGTTTTGAATCATTAATGTATATTAATTTTGACAGACACAGTCAAAGAGGCCATAGCTGCCAAAGTCATACATATCAGTAATTACTGGAAATGACTAAAAACAGCTTTACAGTGTGATATATGAAAA
Unaligned ( gi|18 ): ACATATACTGCTTATCGGTCAAAATCTTACATGTCCATTGGTACCAAAAAGACTAATACAGCTTTACAGTACATAAAGATCACCAATGGCATATAGAAATACATACATCTTGTAAT
Unaligned ( gi|20 ): GTCTTGTTTGTTGATTGGTACCAAAGTTCAAAATGACTAAAACGGATTTTATTAATGTACATGCATGTATAAAAGTCACCCTGACATATTAGATATTA
Unaligned ( gi|21 ): CCAATTTAGCTTCAATTGGTTTGTCGATTATTACTCAAATGACGGAAACGGCTTCACATTACA
Alignments
lowQualScore : 222222222222222 111111111111111 22222222222222222 111111 4444444444444444 111 22222222 1111 111 111
lowQualScore : 66 66 4 0 4 4 999999999999999 2 999999999999999 2 33 22222222222222222 1 77777777777 3 1 000000 44 33 7777 55 7777 3 7777 88888 0 666 55 8888888888888888 4 55 222 00000000 99 4444 1 6 0 777 999
lowQualScore : .. .. . . . . ............... . ............... . .. ................. . ........... . . ...... .. .. .... .. .... . .... ..... . ... .. ................ . .. ... ........ .. .... . . . ... ...
lowQualScore : 11 11 0 1 0 0 777777777777777 9 555555555555555 9 99 99999999999999999 0 66666666666 1 9 222222 66 77 7777 00 7777 6 7777 11111 5 444 00 6666666666666666 0 55 555 77777777 22 2222 0 7 2 000 000
consensus : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--AT-T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
Reference ( family-305 ) : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--AT-T--TCTT-----------------TTNTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
gi|1 : ATCAAAA--TGACCACAA-AC--TGCAATC-TTTT-GTACATT------TGTAATA-CTGACAAGCCTTAG----A--AT-T--CCTT-----------------TTGTTT---ATAA----AGGAACAAT-TGCTGAAACATCAT----TAT--ATGGG-AGTAAAT----CA--T----TC-AT----TGC----AGAGAAATT---TTA--TA---T------------ATCTTTC--AT---A
gi|10 : caaggagcactagctgccaactgttactgaatgattggaagagatttacagtcc-TGTATCA---TGCAATC-TTAAGC----TTTGTACTA--AT-T--CATT-----------------TTATCT---AGAG----TAAAATAAT-G-CGGAAATAATTT----AGC--ATGGA-GGTAAAT----GA--T----TC-AT----TGC----GGAGCAATT---CTATTCAAATT-TA---------AT-TTTC--CT---CATT--------TT--CTAG----CACATCCAAGCATTTTATTCACGGTTCAG-Aaaatttaatcggaaggatgccttttttttttttttcattctcacatatttttttttcaaatttcactttttaaatacattccagtatttcaatcagaaataaaaagttttacatcctacaagacagctaatgtccctttcataacttttgagtatatttcctgttgataaacaa
gi|11 : aacactgatatacaT-T--TCTT-----------------GGGTTT---CTCT----AGAAACAAT-GGCCGAAA
gi|12 : aaaagcaatcattaaaggaacatatagctttaaaagccatgtttgtggactgttttcaaaatgactaaaatagaattacagtatatgaaaatcaccactgacatattaaaattaatcctttgttgctatTAAAA--T--TCATAC-ATTTGGCAATA-TATT-GT-TGTA--A---T-----T-TTGACA----TTA----------------TT-----------------TTCGCC----TAC----AGAAACAAT-GACCGAAACATTAC----AGT--ATGGA-AATAAAT----AA--TTCGATC-AT----TGT----GGAGAGATC---TTA--CA---tgcacat
gi|15 : atcaccactaatacag---TGTAATT-TTGACA----TCAA----A--AT-T--TCTT-----------------TTCTTTTAAATCT----AGAAGCAAT-GGCTGAACCATGAT----TGT--ATG----ATATATGTGCAA--T----AC-AT----TGT----AGAGAAATT---CTA--CA---TACACTTG-----AT-TTTC--AT---Acatgtgtaataaaattaaatca
gi|17 : tATTACAT--T--TCA-ACGATCTTACAATC-TTCT-GT-TGTA----------ATT-TTGACA----TTTG----C--AT-T--TCTT-----------------CTCTTT---ATAC----aaattcaatgaaag
gi|19 : atttattggagtgtcatcacaaagtaaagatacagtacataaacatccctgctgacatAAATTTAAAGTT--TCATAC-ATCATGCAATCTTTTT-GT-TG-----------AATTATCGACA----TAAG-------AT-T--TCTTC----------------TTCCTT---CTAT----AGAAACAA--AACTGAAATATTAT----TGT--AGGTAGAGTAA
gi|2 : actgacATTAAAA--T--G-ATAC-ACCCTGCAACC-TTT------ATA--AATTTGTAAAT-TTAACG----T--A----A--AT-T--TCTT-----------------TAGCTT---ATAA----AGAAACAAT-GGCAGAATCATTAA----TGT--CAGGA-AGTAAA--------------TC---------------------TT---TTA--CA---T--G---------AT-ATTC--ACAGAATTT--------TTTATCAAAGGTCACATT-TAATTTTTCAACCATAGTTCAG-A
gi|3 : tgactctgatcattgatttatgttactgctggcaaataagtgttttaacggacattaagctgccaaaatcatattaattgtttatcaccaaaatgactaaaacagctttacatttacatgaaaatcactaacatACAC-AACTTGTAATC-TTTT-GT-----------TGTAATT-TTGACA------------------------T-----------------TTGTTT---ATGG----AGAAACAAT-AGTCAAATCA-TATAAAATATAAATGG---GCACAT----AGTTT----TC-ATATAATGCGTTTGGAG-GATT---TT---C------------------T-CTTC---------TT--------TT--ATAT----CACTTTCCA-CA-TTTAATCATGCTTCGGAACT--AAAAattagtttttactcttaatgctatttgacagctaatgcccatt
gi|4 : caaaagtacgaatcttaaaggggcattagctggcaaggtcatgttatccaattattagcaaaatggctaaaacagctttaaagtatataaaaatcattactgatATTAAAA--T--TCATTC-ATCATACAATC-TTCT-GT-TGTA--A----GT--TT-TC--CA----TTAG----A--AA-T--TCTT-----------------TTGATT---ATAC----AG-AGCAAT-GACAGAAACATCG-----TGT------C-AGTATAC----AA--C----TC-AT----TGT----GGCAAAATT---TTA--CA-----CA---------CA-TTTG--ATAA-ATTT--------Taggtttacgtcttacctgatagcgaatgtcccttttaaagacattttctaaaaacaa
gi|4 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatTTT--------CT--TTGA----CACTTTCCAGCATTTTAATCATAATTCAG-AATTGAAAATgctaggagttttttctctctcaactgtctgctctttttttttttcttttttttttctttgacactttccagcattttaatcataattcagaattgaaaattttttgcattcta
gi|5 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatattaaaattcattcatcatacaatcttctgttgtaagttttccattagaaattcttttgattatacagagcaatgacagaaacatcgtgtcagtatacaactcattgtggcaaaattttacacacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttctttttttA--T--TCTTAT-TTCTTGCAATC-TTTT-GT-TGTA--A---T-----T-TTGACA----TTA--------AT-T--TTTTCCTTTCCTTTTTTTTTTTTTTTT---TTCCTGTTAAAACCAAA-GGTTGAAACATT-------GT--ATGGA-AGTATAT----AA--T----TC-AT----TGC----TGA-AAATTCGATTA--GAGG-T-CACCTTTTTTCAT-TCTCAGAT---ATTTTCTTCCTCTT--TTAA----CATATTCCGGCATTTTTATCACGGTGAAA-ATT--AAAATGTTA--TTAAGGTACTtttttgcattcta
gi|6 : aattcAAATTAAAA--T--TCATAC-ATCTTGCAGTC-TTTTTGC-TGTAC-A---TGAAATT-TTGATA----TTAG----A--AT-C--TCCT-----------------TTCTTT---ATAC----AGCAACAGT-GGCTGAAATATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AA----TGC----AGAGAAATT---GTA--CA---T-CA---------AC-TCTC--AT---ATTT--------TT--TTAA----TGCATTCCAGCATTTCAATCACAGTTCAG-ACT----AATGTCCCTTTAAGATATTatagtcgacagttaacgcccccttaacacctgataagtgcattt
gi|7 : ---TATAGTT-TT-ACA----TTTG----ATGATGTAATATT-----------------TTGTT----GTAC-----TAAACAAT-GACCAAAACATT-T----TGC--ATGGA-AGTAAAC----AA--T----TTTGT----CGC----AGAGAAATT---TTA--CA-----AA---------AT-TTTC--AT---A
gi|8 : agcaacattaagtttgccaattattaataaaacatacaactttgcatcacattaaaatcattacagactATT-TTGACA----TAGG----A--AT-T--TCTT-----------------TTGTTT---A--C----ATACATAGTTGGCCGAAA-ATTAT----CTT--ATGGA-AGCAAAT----GA--T----TC-AC----TGG----GGATAAAGT---TTA--C----T-TA---------GT-TTTC--AT---Aaaattcaaaaggcgatgcactcgtttt
gi|9 : tcATTAAAA--T--TCATAC-ATCTTGCAATA-TTTC-GT-----------TGTCATT-TTGACA----aaattcgattggaaatcgtcttcatcactgtcaagttttttttcttcatttttcagcgcattttagtattctaataagttttcctggttgacaattaatgc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTTCATTGTATTATAGAAGTAAATCATCAATTGCAGATACATTTCATTTTAATGTCACAAAATTTGATGGAAGGTCACTCTATTTCATTCTCAGATTTCAATGTATTCCAGTATTTAAATCACAATTAAGAATTTTTTAAAATGACATCTTATCAGAC
Unaligned ( gi|14 ): ATTGCCAAAGTTACAATTAAATGTTTGCCAATTATTACCAAAATGACTAAAACAGCTTTTCATTACACAAGACCTACTGACATTTGAAACATCATTCAAACTTTTTGTCGTCATTCTGACATAAAGTCTCAACTGTTTATATATGGTAGA
Unaligned ( gi|16 ): GGTTTTGAATCATTAATGTATATTAATTTTGACAGACACAGTCAAAGAGGCCATAGCTGCCAAAGTCATACATATCAGTAATTACTGGAAATGACTAAAAACAGCTTTACAGTGTGATATATGAAAA
Unaligned ( gi|18 ): ACATATACTGCTTATCGGTCAAAATCTTACATGTCCATTGGTACCAAAAAGACTAATACAGCTTTACAGTACATAAAGATCACCAATGGCATATAGAAATACATACATCTTGTAAT
Unaligned ( gi|20 ): GTCTTGTTTGTTGATTGGTACCAAAGTTCAAAATGACTAAAACGGATTTTATTAATGTACATGCATGTATAAAAGTCACCCTGACATATTAGATATTA
Unaligned ( gi|21 ): CCAATTTAGCTTCAATTGGTTTGTCGATTATTACTCAAATGACGGAAACGGCTTCACATTACA
Alignments
lowQualScore : 222222222222222 222222222222222 22222222222222222 111111 4444444444444444 111 22222222 1111 111 111
lowQualScore : 66 66 4 0 4 4 999999999999999 2 333333333333333 2 33 11111111111111111 99999999999 3 1 000000 44 33 7777 55 7777 3 7777 88888 0 666 55 8888888888888888 4 55 222 00000000 99 4444 1 6 0 777 999
lowQualScore : .. .. . . . . ............... . ............... . .. ................. ........... . . ...... .. .. .... .. .... . .... ..... . ... .. ................ . .. ... ........ .. .... . . . ... ...
lowQualScore : 11 11 0 1 0 0 777777777777777 9 999999999999999 7 77 33333333333333333 44444444444 1 9 222222 66 77 7777 00 7777 6 7777 11111 5 444 00 6666666666666666 0 55 555 77777777 22 2222 0 7 2 000 000
consensus : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--AT-T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
Reference ( family-305 ) : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--AT-T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
gi|1 : ATCAAAA--TGACCACAA-AC--TGCAATC-TTTT-GTACATT------TGTAATA-CTGACAAGCCTTAG----A--AT-T--CCTT-----------------TTGTTT---ATAA----AGGAACAAT-TGCTGAAACATCAT----TAT--ATGGG-AGTAAAT----CA--T----TC-AT----TGC----AGAGAAATT---TTA--TA---T------------ATCTTTC--AT---A
gi|10 : caaggagcactagctgccaactgttactgaatgattggaagagatttacagtcc-TGTATCA---TGCAATC-TTAAGC----TTTGTACTA--AT-T--CATT-----------------TTATCT---AGAG----TAAAATAAT-G-CGGAAATAATTT----AGC--ATGGA-GGTAAAT----GA--T----TC-AT----TGC----GGAGCAATT---CTATTCAAATT-TA---------AT-TTTC--CT---CATT--------TT--CTAG----CACATCCAAGCATTTTATTCACGGTTCAG-Aaaatttaatcggaaggatgccttttttttttttttcattctcacatatttttttttcaaatttcactttttaaatacattccagtatttcaatcagaaataaaaagttttacatcctacaagacagctaatgtccctttcataacttttgagtatatttcctgttgataaacaa
gi|11 : aacactgatatacaT-T--TCTT-----------------GGGTTT---CTCT----AGAAACAAT-GGCCGAAA
gi|12 : aaaagcaatcattaaaggaacatatagctttaaaagccatgtttgtggactgttttcaaaatgactaaaatagaattacagtatatgaaaatcaccactgacatattaaaattaatcctttgttgctatTAAAA--T--TCATAC-ATTTGGCAATA-TATT-GT-TGTA--A---T-----T-TTGACA----TTA---------------TTT-----------------TCGCCT---A--C----AGAAACAAT-GACCGAAACATTAC----AGT--ATGGA-AATAAAT----AA--TTCGATC-AT----TGT----GGAGAGATC---TTA--CA---tgcacat
gi|15 : atcaccactaatacag---TGTAATT-TTGACA----TCAA----A--AT-T--TCTT-----------------TTCTTTTAAATCT----AGAAGCAAT-GGCTGAACCATGAT----TGT--ATG----ATATATGTGCAA--T----AC-AT----TGT----AGAGAAATT---CTA--CA---TACACTTG-----AT-TTTC--AT---Acatgtgtaataaaattaaatca
gi|17 : tATTACAT--T--TCA-ACGATCTTACAATC-TTCT-GT-TGTA----------ATT-TTGACA----TTTG----C--AT-T--TCTT-----------------CTCTTT---ATAC----aaattcaatgaaag
gi|19 : atttattggagtgtcatcacaaagtaaagatacagtacataaacatccctgctgacatAAATTTAAAGTT--TCATAC-ATCATGCAATCTTTTT-GT-TG-----------AATTATCGACA----TAAG-------AT-T--TCTTC----------------TTCCTT---CTAT----AGAAACAA--AACTGAAATATTAT----TGT--AGGTAGAGTAA
gi|2 : actgacATTAAAA--T--G-ATAC-ACCCTGCAACC-TTT------ATA--AATTTGTAAAT-TTAACG----T--A----A--AT-T--TCTT-----------------TAGCTT---ATAA----AGAAACAAT-GGCAGAATCATTAA----TGT--CAGGA-AGTAAA--------------TC---------------------TT---TTA--CA---T--G---------AT-ATTC--ACAGAATTT--------TTTATCAAAGGTCACATT-TAATTTTTCAACCATAGTTCAG-A
gi|3 : tgactctgatcattgatttatgttactgctggcaaataagtgttttaacggacattaagctgccaaaatcatattaattgtttatcaccaaaatgactaaaacagctttacatttacatgaaaatcactaacatACAC-AACTTGTAATC-TTTT-GT-----------TGTAATT-TTGACA------------------------T-----------------TTGTTT---ATGG----AGAAACAAT-AGTCAAATCA-TATAAAATATAAATGG---GCACAT----AGTTT----TC-ATATAATGCGTTTGGAG-GATT---TT---C------------------T-CTTC---------TT--------TT--ATAT----CACTTTCCA-CA-TTTAATCATGCTTCGGAACT--AAAAattagtttttactcttaatgctatttgacagctaatgcccatt
gi|4 : caaaagtacgaatcttaaaggggcattagctggcaaggtcatgttatccaattattagcaaaatggctaaaacagctttaaagtatataaaaatcattactgatATTAAAA--T--TCATTC-ATCATACAATC-TTCT-GT-TGTA--A----GT--TT-TC--CA----TTAG----A--AA-T--TCTT-----------------TTGATT---ATAC----AG-AGCAAT-GACAGAAACATCG-----TGT------C-AGTATAC----AA--C----TC-AT----TGT----GGCAAAATT---TTA--CA-----CA---------CA-TTTG--ATAA-ATTT--------Taggtttacgtcttacctgatagcgaatgtcccttttaaagacattttctaaaaacaa
gi|4 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatTTT--------CT--TTGA----CACTTTCCAGCATTTTAATCATAATTCAG-AATTGAAAATgctaggagttttttctctctcaactgtctgctctttttttttttcttttttttttctttgacactttccagcattttaatcataattcagaattgaaaattttttgcattcta
gi|5 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatattaaaattcattcatcatacaatcttctgttgtaagttttccattagaaattcttttgattatacagagcaatgacagaaacatcgtgtcagtatacaactcattgtggcaaaattttacacacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttctttttttA--T--TCTTAT-TTCTTGCAATC-TTTT-GT-TGTA--A---T-----T-TTGACA----TTA--------AT-T--TTTTCCTTTCCTTTTTTTTTTTTTTTT---TTCCTGTTAAAACCAAA-GGTTGAAACATT-------GT--ATGGA-AGTATAT----AA--T----TC-AT----TGC----TGA-AAATTCGATTA--GAGG-T-CACCTTTTTTCAT-TCTCAGAT---ATTTTCTTCCTCTT--TTAA----CATATTCCGGCATTTTTATCACGGTGAAA-ATT--AAAATGTTA--TTAAGGTACTtttttgcattcta
gi|6 : aattcAAATTAAAA--T--TCATAC-ATCTTGCAGTC-TTTTTGC-TGTAC-A---TGAAATT-TTGATA----TTAG----A--AT-C--TCCT-----------------TTCTTT---ATAC----AGCAACAGT-GGCTGAAATATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AA----TGC----AGAGAAATT---GTA--CA---T-CA---------AC-TCTC--AT---ATTT--------TT--TTAA----TGCATTCCAGCATTTCAATCACAGTTCAG-ACT----AATGTCCCTTTAAGATATTatagtcgacagttaacgcccccttaacacctgataagtgcattt
gi|7 : ---TATAGTT-TT-ACA----TTTG----ATGATGTAATATT-----------------TTGTT----GTAC-----TAAACAAT-GACCAAAACATT-T----TGC--ATGGA-AGTAAAC----AA--T----TTTGT----CGC----AGAGAAATT---TTA--CA-----AA---------AT-TTTC--AT---A
gi|8 : agcaacattaagtttgccaattattaataaaacatacaactttgcatcacattaaaatcattacagactATT-TTGACA----TAGG----A--AT-T--TCTT-----------------TTGTTT---A--C----ATACATAGTTGGCCGAAA-ATTAT----CTT--ATGGA-AGCAAAT----GA--T----TC-AC----TGG----GGATAAAGT---TTA--C----T-TA---------GT-TTTC--AT---Aaaattcaaaaggcgatgcactcgtttt
gi|9 : tcATTAAAA--T--TCATAC-ATCTTGCAATA-TTTC-GT-----------TGTCATT-TTGACA------------A--TT-T--TGGT-----------------TTGTTaaattcgattggaaatcgtcttcatcactgtcaagttttttttcttcatttttcagcgcattttagtattctaataagttttcctggttgacaattaatgc
blockSeqs : GT . G T T TGTATCATGCA A TTTGTACTA G AA CCTTTCCTTTTTTTTTT TTCCTGTT T G ATAAAA AA AG GTGC TT TCGA T ATAA GTTTG CGA TT GGTCACCTTTTTTC . AG AGA TCTTCCTC TA AGGT A A TGA CCT
blockSeqs : . . . . . ATAAATTTGTA . TTTGATG . . C TAAATCT . C TT . A . . . . . G . . TACACTTG . . AA . . . G . A
blockSeqs : . . . . . TGTACATGAA . TCAAA . . . AGAG . C AC . A . . . . . G . . AATTTA . . . . . . G . .
blockSeqs : . . . . . TGTAAGT . TTTGC . . . CTCT . T AT . A . . . . . A . . TCA . . . . . . G .
blockSeqs : . . . . . TGTAAT . TTAGA . . . ATAC . T AT . C . . . . . G . . TTA . . . . . . . .
blockSeqs : . . . . . TGTAAT . TTAGA . . . CTAT . A AA . A . . . . . T . . TG . . . .
blockSeqs : . . . . . TGTA . TAGGA . . . ATAA . C AT . A . . . . . A . . CA . . .
blockSeqs : . . . . . TGTA . TAAG . . . ATGG . A AT . A . . . . . A . . AA . . .
blockSeqs : . . . TGTC . TTA . . . ATAC . T G . A . . . . . G . . . . . .
blockSeqs : TGA . TAA . . . ATAC . T T . . . . . . . . . .
blockSeqs : . TTA . . . GTAC . C . . .
blockSeqs : . A . . . AC . C
blockSeqs : . . . . . AC
blockSeqs : . . .
blockSeqCons : ** TGTA*********** TTGA*********** TTA*************
originalCons : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GT-TGTA--A---TGTAATT-TTGACA----TTAG----A--AT-T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CA---T-CA---------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
finalCons : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTTT-GTTGTA-----------ATT-TTGACATTGA-----------AT-T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA--CATTA-------------AT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTTCATTGTATTATAGAAGTAAATCATCAATTGCAGATACATTTCATTTTAATGTCACAAAATTTGATGGAAGGTCACTCTATTTCATTCTCAGATTTCAATGTATTCCAGTATTTAAATCACAATTAAGAATTTTTTAAAATGACATCTTATCAGAC
Unaligned ( gi|14 ): ATTGCCAAAGTTACAATTAAATGTTTGCCAATTATTACCAAAATGACTAAAACAGCTTTTCATTACACAAGACCTACTGACATTTGAAACATCATTCAAACTTTTTGTCGTCATTCTGACATAAAGTCTCAACTGTTTATATATGGTAGA
Unaligned ( gi|16 ): GGTTTTGAATCATTAATGTATATTAATTTTGACAGACACAGTCAAAGAGGCCATAGCTGCCAAAGTCATACATATCAGTAATTACTGGAAATGACTAAAAACAGCTTTACAGTGTGATATATGAAAA
Unaligned ( gi|18 ): ACATATACTGCTTATCGGTCAAAATCTTACATGTCCATTGGTACCAAAAAGACTAATACAGCTTTACAGTACATAAAGATCACCAATGGCATATAGAAATACATACATCTTGTAAT
Unaligned ( gi|20 ): GTCTTGTTTGTTGATTGGTACCAAAGTTCAAAATGACTAAAACGGATTTTATTAATGTACATGCATGTATAAAAGTCACCCTGACATATTAGATATTA
Unaligned ( gi|21 ): CCAATTTAGCTTCAATTGGTTTGTCGATTATTACTCAAATGACGGAAACGGCTTCACATTACA
Alignments
lowQualScore : 22222222222222222222222222222222222222222 111111 4444444444444444 22222222 1111 111 111
lowQualScore : 55 55 3 3 3 3 6 444 66666 777777 2 2 88888888888888888888888888888888888888888 0 99999999999 3 1 000000 44 33 7777 55 7777 3 7777 88888 0 666 1111111111111111 4 8888888 44444444 99 4444 1 6 0 777 999
lowQualScore : .. .. . . . . . ... ..... ...... . . ......................................... . ........... . . ...... .. .. .... .. .... . .... ..... . ... ................ . ....... ........ .. .... . . . ... ...
lowQualScore : 00 00 1 8 1 1 2 777 77777 222222 5 5 66666666666666666666666666666666666666666 4 55555555555 1 9 222222 66 77 7777 00 7777 6 7777 11111 5 444 9999999999999999 4 3333333 22222222 22 2222 0 7 2 000 000
consensus : AAATTAAAA--T--TCATAC-ATCNTGCAATC-TTT-T-G---T-----TGTA------A-TT-TTGACA----T-T-GAA-T----T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA-----CA------TTAAT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
Reference ( family-305 ) : AAATTAAAA--T--TCATAC-ATCTTGCAATC-TTT-T-G---T-----TGTA------A-TT-TTGACA----T-T-GAA-T----T--TCTT-----------------TTGTTT---ATAC----AGAAACAAT-GGCCGAAACATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AT----TGC----GGAGAAATT---TTA-----CA------TTAAT-TTTC--AT---ATTT--------TT--TTAA----CACATTCCAGCATTTTAATCACGGTTCAG-ACT--AAAATGTCNCTTTAAGGTACT
gi|1 : ATCAAAA--TGACCACAA-AC--TGCAATC-TTT-T-G---TACATTTGTA------A-TA-CTGACAAGCCT-TAGAA-T----T--CCTT-----------------TTGTTT---ATAA----AGGAACAAT-TGCTGAAACATCAT----TAT--ATGGG-AGTAAAT----CA--T----TC-AT----TGC----AGAGAAATT---TTA-----TA------T--ATCTTTC--AT---A
gi|10 : caaggagcactagctgccaactgttactgaatgattggaagagatttacagtccA--T--ACATGT-ATCATGCAATC-TT-----------------A------AGCT-TTG-TA----C-T--AA-T----T--CATT-----------------TTATCT---AGAG----TAAAATAAT-G-CGGAAATAATTT----AGC--ATGGA-GGTAAAT----GA--T----TC-AT----TGC----GGAGCAATT---CTATT---CAAAT---TTAAT-TTTC--CT---CATT--------TT--CTAG----CACATCCAAGCATTTTATTCACGGTTCAG-Aaaatttaatcggaaggatgccttttttttttttttcattctcacatatttttttttcaaatttcactttttaaatacattccagtatttcaatcagaaataaaaagttttacatcctacaagacagctaatgtccctttcataacttttgagtatatttcctgttgataaacaa
gi|11 : aacactgatATTAAAA--T--T-------------AATC-CTT-T-G---T-----TGCT------A-TT-TT--C-----T-T-GGG-T----T--TCTC-----------------T----------------AGAAACAAT-GGCCGAAA
gi|12 : aaaagcaatcattaaaggaacatatagctttaaaagccatgtttgtggactgttttcaaaatgactaaaatagaattacagtatatgaaaatcaccactgacatTAAAA--T--TCATAC-ATTTGGCAATA-TAT-T-G---T-----TGTA------A-TT-TTGACA----T-T---A-T----T--T--------------------TCGCCT---A--C----AGAAACAAT-GACCGAAACATTAC----AGT--ATGGA-AATAAAT----AA--TTCGATC-AT----TGT----GGAGAGATC---TTA-----CA------tgcacat
gi|14 : atcaccactaatacagAC-ATCATTCAAAC-TTT-TTG---T-----CGTC------A-TT-CTGACA----T-A-AAG-T----C--TCAA-----------------CTGTTT---ATAT----Acatgtgtaataaaattaaatca
gi|15 : attgccaaagttacaattaaatgtttgccaattattaccaaaatgactaaaacagcttttcattacacaagacctactgacatttgaa---T-----TGTA------A-TT-TTGACA----T-C-AAAAT----T--TCTT-----------------TTCTTTTAAATCT----AGAAGCAAT-GGCTGAACCATGAT----TGT--ATG----ATATATGTGCAA--T----AC-AT----TGT----AGAGAAATT---CTA-----CATACAC-TTGAT-TTTC--AT---Atggtaga
gi|17 : ATTACAT--T--TCA-ACGATCTTACAATC-TTC-T-G---T-----TGTA------A-TT-TTGACAT---T-T-GCA-T----T--TCTT-----------------CTCTTT---ATAC----aaattcaatgaaag
gi|19 : atttattggagtgtcatcacaaagtaaagatacagtacataaacatccctgctgacatAAATTTAAAGTT--TCATAC-ATCATGCAATCTTTT-T-G---T-----TG-A------A-TTATCGACA----T-A-AGA-T----T--TCTTC----------------TTCCTT---CTAT----AGAAACAA--AACTGAAATATTAT----TGT--AGGTAGAGTAA
gi|2 : actgacATTAAAA--T--G-ATAC-ACCCTGCAACC-TTTAT-AAATT-----TGTA------A-AT-TTAACG----T---AAA-T----T--TCTT-----------------TAGCTT---ATAA----AGAAACAAT-GGCAGAATCATTAA----TGT--CAGGA-AGTAAA--------------TC---------------------TT---TTA-----CA-------TGAT-ATTC--ACAGAATTT--------TTTATCAAAGGTCACATT-TAATTTTTCAACCATAGTTCAG-A
gi|3 : tgactctgatcattgatttatgttactgctggcaaataagtgttttaacggacattaagctgccaaaatcatattaattgtttatcaccaaaatgactaaaacagctttacatttacatgaaaatcactaacatACAC-AACTTGTAATC-TTT-T-G---T-----TGTA------A-TT-TTGACA-----------------------T-----------------TTGTTT---ATGG----AGAAACAAT-AGTCAAATCA-TATAAAATATAAATGG---GCACAT----AGTTT----TC-ATATAATGCGTTTGGAG-GATT---TT------C-----------T-CTTC---------TT--------TT--ATAT----CACTTTCCA-CA-TTTAATCATGCTTCGGAACT--AAAAattagtttttactcttaatgctatttgacagctaatgcccatt
gi|4 : caaaagtacgaatcttaaaggggcattagctggcaaggtcatgttatccaattattagcaaaatggctaaaacagctttaaagtatataaaaatcattactgatATTAAAA--T--TCATTC-ATCATACAATC-TTC-T-G---T-----TGTA------A-GT-TTTCCA----T-TAGAA-A----T--TCTT-----------------TTGATT---ATAC----AG-AGCAAT-GACAGAAACATCG-----TGT------C-AGTATAC----AA--C----TC-AT----TGT----GGCAAAATT---TTA-----CA------aggtttacgtcttacctgatagcgaatgtcccttttaaagacattttctaaaaacaa
gi|4 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatTTT--------CT--TTGA----CACTTTCCAGCATTTTAATCATAATTCAG-AATTGAAAATcacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttcttttttttttctttgacactttccagcattttaatcataattcagaattgaaaattttttgcattcta
gi|5 : agttatgcatggagattgttaccaaaataattttaacagcttcacagtacattgacatctccaccaagatattaaaattcattcatcatacaatcttctgttgtaagttttccattagaaattcttttgattatacagagcaatgacagaaacatcgtgtcagtatacaactcattgtggcaaaattttacacacatttgataaattttgctaggagttttttctctctcaactgtctgctctttttttttttctttttttA--T--TCTTAT-TTCTTGCAATC-TTT-T-G---T-----TGTA------A-TT-TTGACA----T-T--AA-T----T--TTTTCCTTTCCTTTTTTTTTTTTTTTT---TTCCTGTTAAAACCAAA-GGTTGAAACATT-------GT--ATGGA-AGTATAT----AA--T----TC-AT----TGC----TGA-AAATTCGATTAGAGGTCACCTTTTTTCAT-TCTCAGAT---ATTTTCTTCCTCTT--TTAA----CATATTCCGGCATTTTTATCACGGTGAAA-ATT--AAAATGTTA--TTAAGGTACTtttttgcattcta
gi|6 : aattcAAATTAAAA--T--TCATAC-ATCTTGCAGTC-TTT-TTG---C-----TGTACATGAAA-TT-TTGATA----T-TAGAA-T----C--TCCT-----------------TTCTTT---ATAC----AGCAACAGT-GGCTGAAATATTAT----TGT--ATGGA-AGTAAAT----AA--T----TC-AA----TGC----AGAGAAATT---GTA-----CA------TCAAC-TCTC--AT---ATTT--------TT--TTAA----TGCATTCCAGCATTTCAATCACAGTTCAG-ACT----AATGTCCCTTTAAGATATTatagtcgacagttaacgcccccttaacacctgataagtgcattt
gi|7 : ---T-----TATA------G-TT-TT-ACA----T-T-TGA-TGATGTAATATT-----------------TTGTT----GTAC-----TAAACAAT-GACCAAAACATT-T----TGC--ATGGA-AGTAAAC----AA--T----TTTGT----CGC----AGAGAAATT---TTA-----CA-------AAAT-TTTC--AT---A
gi|8 : agcaacattaagtttgccaattattaataaaacatacaactttgcatcacattaaaatcattacagac------A-TT-TTGACA----TAG-GAA-T----T--TCTT-----------------TTGTTT---A--C----ATACATAGTTGGCCGAAA-ATTAT----CTT--ATGGA-AGCAAAT----GA--T----TC-AC----TGG----GGATAAAGT---TTA-----C-------TTAGT-TTTC--AT---Aaaattcaaaaggcgatgcactcgtttt
gi|9 : tcATTAAAA--T--TCATAC-ATCTTGCAATA-TTT-C-G---T-----TGTC------A-TT-TTGACA---------AT-T----T--TGGT-----------------TTGTTaaattcgattggaaatcgtcttcatcactgtcaagttttttttcttcatttttcagcgcattttagtattctaataagttttcctggttgacaattaatgc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTTCATTGTATTATAGAAGTAAATCATCAATTGCAGATACATTTCATTTTAATGTCACAAAATTTGATGGAAGGTCACTCTATTTCATTCTCAGATTTCAATGTATTCCAGTATTTAAATCACAATTAAGAATTTTTTAAAATGACATCTTATCAGAC
Unaligned ( gi|16 ): GGTTTTGAATCATTAATGTATATTAATTTTGACAGACACAGTCAAAGAGGCCATAGCTGCCAAAGTCATACATATCAGTAATTACTGGAAATGACTAAAAACAGCTTTACAGTGTGATATATGAAAA
Unaligned ( gi|18 ): ACATATACTGCTTATCGGTCAAAATCTTACATGTCCATTGGTACCAAAAAGACTAATACAGCTTTACAGTACATAAAGATCACCAATGGCATATAGAAATACATACATCTTGTAAT
Unaligned ( gi|20 ): GTCTTGTTTGTTGATTGGTACCAAAGTTCAAAATGACTAAAACGGATTTTATTAATGTACATGCATGTATAAAAGTCACCCTGACATATTAGATATTA
Unaligned ( gi|21 ): CCAATTTAGCTTCAATTGGTTTGTCGATTATTACTCAAATGACGGAAACGGCTTCACATTACA