lowQualScore : 2 2 2 2 777777 33 444 555 5 33 66 2 0 3
lowQualScore : . . . . ...... .. ... ... . .. .. . . .
lowQualScore : 7 7 7 7 777777 77 777 000 7 99 88 9 4 3
consensus : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-GA--G--GTG-AAAAATTGATG-TCTT
Reference ( gi|12 ) : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-GA--G--GTG-AAAAATTGATG-TCTT
gi|13 : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-GG--G--GTG-AAAAATTGATG-TCT
gi|3 : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-GA--G--GTG-AAAAATTTATG-CCTT
gi|10 : ggGTGAAACA-CAATAAA-GGGAA-C-A------GT--AATA---TTGCA---CTT-GA--G--GTG-AAAAATTGATG-TCTt
gi|11 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AAT----TTGCA---CTT-GA--G--G-G-AAAAATTGATG-TCTT
gi|4 : gGTGAAACA-AAATAAA-GGGAA-C-A------AT--AGTG---TTGCA---CTTAGG--G--GTG-AACAATTGATG-TCTTt
gi|15 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-GA--G--GTG-AAAAt
gi|9 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG----TGCA---CTT-GG--G--GTG-AAAAAAGTATG-TCTTtt
gi|5 : ggGTGAAACA-CAAATAA-GGGGA-C-A------GT--AGTG---TTGCA---CTT-GG--GTCGTG-AAAAATT-ATGTTCTT
gi|16 : GTGAAACA-CAATATA-GGGAA-C-A------GT--AGTG---Tt
gi|8 : cggTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-GG--G--GTG-AAAAATTGATG-TCTT
gi|2 : ggaTGAAACA-CAATAAA-GGGAA-C-AGAAACAGT--AGTG---TTGCA---CTT-GA--G--GTGAAAAAATTGATG-TCTT
gi|7 : aGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CTT-AA--G--GTG-AAAAAACTATG-TCTTt
gi|6 : gaGAGACAGCAATAAAAGGGAATC-A------GT--AGT----TTGCA---TT---A--GC-GTG-AAAAAta
gi|14 : cgagaAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---T--CA---CTTAGA--G--GT---AAAATTGATG-TCTTaactatgtc
gi|1 : gaaAAACA-CAAATAA-GGGAA-CCA------GTGAAGTGGAGTTGCAAAACT--GATGG--GTG-AAAA-TTGATG-TCTTa
Alignments
lowQualScore : 2 2 2 2 777777 33 444 444 33 5 66 2 3
lowQualScore : . . . . ...... .. ... ... .. . .. . .
lowQualScore : 5 5 5 5 222222 44 444 777 77 3 33 7 1
consensus : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
Reference ( family-303 ) : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
gi|1 : AAACA-CAAATAA-GGGAA-CCA------GTGAAGTGGAGTTGCAAAACTGAT-G-G--GTG-AAAA-TTGATG-TCTT
gi|10 : ggattgaaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AATA---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTta
gi|11 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AAT----TTGCA---CT--T-GAG--G-G-AAAAATTGATG-TCTT
gi|12 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTTt
gi|13 : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GGG--GTG-AAAAATTGATG-TCT
gi|14 : AAACA-CAATAAA-GGGAA-C-A------GT--AGTG---T--CA---CT--TAGAG--GT---AAAATTGATG-TCTT
gi|15 : gaaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAa
gi|16 : gGTGAAACA-CAATATA-GGGAA-C-A------GT--AGTG---Ttt
gi|2 : cggTGAAACA-CAATAAA-GGGAA-C-AGAAACAGT--AGTG---TTGCA---CT--T-GAG--GTGAAAAAATTGATG-TCTT
gi|3 : aGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTTATG-CCTTt
gi|4 : ggGTGAAACA-AAATAAA-GGGAA-C-A------AT--AGTG---TTGCA---CT--TAGGG--GTG-AACAATTGATG-TCTTt
gi|5 : gGTGAAACA-CAAATAA-GGGGA-C-A------GT--AGTG---TTGCA---CT--T-GGGTCGTG-AAAAATT-ATGTTCTTt
gi|6 : GAGACAGCAATAAAAGGGAATC-A------GT--AGT----TTGCA---TT-----AGC-GTG-AAAAAt
gi|7 : cgagaGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-AAG--GTG-AAAAAACTATG-TCTTaactatgtc
gi|8 : gaTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GGG--GTG-AAAAATTGATG-TCTTta
gi|9 : ggaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG----TGCA---CT--T-GGG--GTG-AAAAAAGTATG-TCTT
Alignments
lowQualScore : 2 2 2 2 777777 33 444 444 33 5 66 2 3
lowQualScore : . . . . ...... .. ... ... .. . .. . .
lowQualScore : 5 5 5 5 222222 44 444 777 77 3 33 7 1
consensus : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
Reference ( family-303 ) : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
gi|1 : AAACA-CAAATAA-GGGAA-CCA------GTGAAGTGGAGTTGCAAAACTGAT-G-G--GTG-AAAA-TTGATG-TCTT
gi|10 : ggattgaaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AATA---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTta
gi|11 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AAT----TTGCA---CT--T-GAG--G-G-AAAAATTGATG-TCTT
gi|12 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTTt
gi|13 : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GGG--GTG-AAAAATTGATG-TCT
gi|14 : AAACA-CAATAAA-GGGAA-C-A------GT--AGTG---T--CA---CT--TAGAG--GT---AAAATTGATG-TCTT
gi|15 : gaaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAa
gi|16 : gGTGAAACA-CAATATA-GGGAA-C-A------GT--AGTG---Ttt
gi|2 : cggTGAAACA-CAATAAA-GGGAA-C-AGAAACAGT--AGTG---TTGCA---CT--T-GAG--GTGAAAAAATTGATG-TCTT
gi|3 : aGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTTATG-CCTTt
gi|4 : ggGTGAAACA-AAATAAA-GGGAA-C-A------AT--AGTG---TTGCA---CT--TAGGG--GTG-AACAATTGATG-TCTTt
gi|5 : gGTGAAACA-CAAATAA-GGGGA-C-A------GT--AGTG---TTGCA---CT--T-GGGTCGTG-AAAAATT-ATGTTCTTt
gi|6 : GAGACAGCAATAAAAGGGAATC-A------GT--AGT----TTGCA---TT-----AGC-GTG-AAAAAt
gi|7 : cgagaGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-AAG--GTG-AAAAAACTATG-TCTTaactatgtc
gi|8 : gaTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GGG--GTG-AAAAATTGATG-TCTTta
gi|9 : ggaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG----TGCA---CT--T-GGG--GTG-AAAAAAGTATG-TCTT
blockSeqs : G A T . GAAACA . . . . A TC A T
blockSeqs : . . . . . . . . . A C . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** *** *** **
originalCons : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
finalCons : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
Alignments
lowQualScore : 2 2 2 2 777777 33 444 444 33 5 66 2 3
lowQualScore : . . . . ...... .. ... ... .. . .. . .
lowQualScore : 5 5 5 5 222222 44 444 777 77 3 33 7 1
consensus : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
Reference ( family-303 ) : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTT
gi|1 : AAACA-CAAATAA-GGGAA-CCA------GTGAAGTGGAGTTGCAAAACTGAT-G-G--GTG-AAAA-TTGATG-TCTT
gi|10 : ggattgaaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AATA---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTta
gi|11 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AAT----TTGCA---CT--T-GAG--G-G-AAAAATTGATG-TCTT
gi|12 : gGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTGATG-TCTTt
gi|13 : GTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GGG--GTG-AAAAATTGATG-TCT
gi|14 : AAACA-CAATAAA-GGGAA-C-A------GT--AGTG---T--CA---CT--TAGAG--GT---AAAATTGATG-TCTT
gi|15 : gaaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAa
gi|16 : gGTGAAACA-CAATATA-GGGAA-C-A------GT--AGTG---Ttt
gi|2 : cggTGAAACA-CAATAAA-GGGAA-C-AGAAACAGT--AGTG---TTGCA---CT--T-GAG--GTGAAAAAATTGATG-TCTT
gi|3 : aGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GAG--GTG-AAAAATTTATG-CCTTt
gi|4 : ggGTGAAACA-AAATAAA-GGGAA-C-A------AT--AGTG---TTGCA---CT--TAGGG--GTG-AACAATTGATG-TCTTt
gi|5 : gGTGAAACA-CAAATAA-GGGGA-C-A------GT--AGTG---TTGCA---CT--T-GGGTCGTG-AAAAATT-ATGTTCTTt
gi|6 : GAGACAGCAATAAAAGGGAATC-A------GT--AGT----TTGCA---TT-----AGC-GTG-AAAAAt
gi|7 : cgagaGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-AAG--GTG-AAAAAACTATG-TCTTaactatgtc
gi|8 : gaTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG---TTGCA---CT--T-GGG--GTG-AAAAATTGATG-TCTTta
gi|9 : ggaGTGAAACA-CAATAAA-GGGAA-C-A------GT--AGTG----TGCA---CT--T-GGG--GTG-AAAAAAGTATG-TCTT