lowQualScore : 111111111111 1111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 000000000000 4 1 4 4 1 8888888888888888888888888888888888888888888888888888888888888888888 333 1 333 2 33 2 444444444444444 2 22 444 2 2 7777777777777777777777777 2 1 4 3333333333333333333333333333333333333 2 1 333 1 1 1 222 1 1 1 1 4 4444444 55 1 4 111 11 666666666666 2 5555555555555555 1 1 1 33 1 33 1 7777777777 33333 33 4 1 777777 1 1 2 666666 22 11 5555 1 1111111 1 1 111 555555555555555555555555 66666666666666666666666666 1 222 11 4444444444 11 1 666666 7777777777777777777 11 1111111 222 11 44 111111 11111 222222 1111 11 333333333 111 22222 1 22 111 1 3333333333 22222 1 1 33333 11 3 44444 2 222 11 11 33 11 1 11 22 33333 444 1 444444 1 11 1 555 3333333333333 11 1 22 22 2 333 11 4 1 333 2 444 2 1 5555555555555555555555 1 1 1 33 33 111 8888888888888888888888888888888888888888 1 111 1 222 1 33333333 44 1 111 2 111 1 2 4444444 2222222 555 4 11 1 4 2 1 4444444 444444444444444444444444 11
lowQualScore : 6 6 999999999999 0 7 0 0 7 4444444444444444444444444444444444444444444444444444444444444444444 0 8 111 0 333 0 00 0 000000000000000 7 22 666 3 0 8888888888888888888888888 0 2 5 0 7777777777777777777777777777777777777 55 3 5 888 5 5 5 777 5 5 7 5 0 9999999 2 55 0 0 111 33 222222222222 8 6 7777777777777777 0 0 0 2 11 2 0 77 0 55 5555555555 6 0 3 88888 2 33 3 0 3 0 666666 0 3 6 0 555555 55 2 66 5555 5 7 7777777 3 7 999 777777777777777777777777 6 00000000000000000000000000 2 0 000 11 0 1111111111 11 8 5 111111 5555555555555555555 11 44 6 99 6 7777777 222 6 00 6 33 2 999999 6 6 6 6 11111 222222 9999 6 00 99 555555555 8 8 666 22222 44 5 00 6 6 99 444 8 2 5555555555 00000 88 6 0 77777 2 9 33 0 77777 0 2 222 22 22 66 33 0 33 33 88888 2 2 666 0 222222 2 0 8 2 33 0 111 2222222222222 88 3 2 4 2 77 77 0 2 555 6 77 7 0 5 000 0 777 0 5 7777777777777777777777 5 2 5 6 3 11 7 11 666 9999999999999999999999999999999999999999 2 0 666 3 333 3 11111111 55 6 3 111 0 3 3 777 3 4 0 4444444 4444444 111 0 88 5 0 0 5 2222222 666666666666666666666666 00 6
lowQualScore : . . ............ . . . . . ................................................................... . . ... . ... . .. . ............... . .. ... . . ......................... . . . . ..................................... .. . . ... . . . ... . . . . . ....... . .. . . ... .. ............ . . ................ . . . . .. . . .. . .. .......... . . . ..... . .. . . . . ...... . . . . ...... .. . .. .... . . ....... . . ... ........................ . .......................... . . ... .. . .......... .. . . ...... ................... .. .. . .. . ....... ... . .. . .. . ...... . . . . ..... ...... .... . .. .. ......... . . ... ..... .. . .. . . .. ... . . .......... ..... .. . . ..... . . .. . ..... . . ... .. .. .. .. . .. .. ..... . . ... . ...... . . . . .. . ... ............. .. . . . . .. .. . . ... . .. . . . ... . ... . . ...................... . . . . . .. . .. ... ........................................ . . ... . ... . ........ .. . . ... . . . ... . . . ....... ....... ... . .. . . . . ....... ........................ .. .
lowQualScore : 0 0 000000000000 0 0 0 0 0 5555555555555555555555555555555555555555555555555555555555555555555 2 8 555 0 000 0 55 0 000000000000000 5 55 000 0 0 0000000000000000000000000 0 5 5 0 0000000000000000000000000000000000000 55 0 5 000 5 5 5 000 0 5 0 0 0 0000000 5 00 0 0 888 88 555555555555 5 0 8888888888888888 0 0 0 5 00 5 0 00 0 88 5555555555 0 8 2 88888 5 22 2 0 2 0 555555 0 0 8 0 555555 00 5 00 0000 3 3 0000000 3 0 333 333333333333333333333333 7 55555555555555555555555555 5 0 000 00 8 4444444444 00 0 0 444444 4444444444444444444 55 33 7 22 7 8888888 333 7 88 7 00 5 222222 7 7 7 7 33333 000000 7777 7 55 22 555555555 0 0 222 33333 00 4 22 7 7 22 444 0 8 2222222222 00000 88 0 0 55555 5 8 88 0 55555 0 5 000 55 22 22 88 0 88 88 00000 5 0 000 0 555555 2 0 8 5 88 0 222 1111111111111 33 3 5 0 5 55 55 0 5 000 0 55 3 0 5 000 0 000 0 0 5555555555555555555555 0 5 5 0 3 00 3 00 777 9999999999999999999999999999999999999999 5 0 222 3 333 3 33333333 00 0 3 888 0 2 2 777 3 0 0 5555555 0000000 000 0 00 0 0 0 0 5555555 222222222222222222222222 33 0
consensus : NGTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTACAG--TTATCGTCTTGTGTTTGTATGCAGAAAAAGGNT--ATCTCC-GCAG-ATCGA-GAGGTGGT--TCGCTTGCCTCAACACAC-CAAACTG-TCTACAGTTTGNTTTGTTCGNATCCATTTTTATCACATCCTNNTAGNCNANTGGTTGATAAGGCATCNTAGCTTT-TTACACCCGAGTCTCGAATNCGCTAGGGNTTAGTTGTTTCATACATGATNCTTGCTGT-AATACATTTCAAAATT--TGTTTTCNCGCATTTCAGAATCCC-ACGTTTCCNNCGTTTTCTGATATGCATATCCAATCAATAGTTTTCGTCCTTGTTTTGACCCTGATCA-TGAACAACTTAT-AACTTGGTTACAAC--ACGT-CTACTCC-ATTAANATATAT--TAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-A--AATG-TTGGGCCTG-AT-TGTAAGTTCTGG-CAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-AC-AATCTTCA-CNAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAATC---CACCC-AAATGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA---GG-GGGCGC------ATATGTTTTTT------CGGGG------ATTGT---GTTACTCGG-GTCATGGGCG--AGTCCATCGTATT--CG-ATTGGCTGATGG--C-GGACCAGGGGGA--GA-TAAAGGAATATTTGGACCATCA-TTCTGGCCCCGTTGTTTTTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTGT-GCGAA-G-TTGGTGGC---C--AAG-TTA-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG---ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTN-GGTTTCTCTCATCCAC-CTCTTTT-AAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTCG-G----TG-GTACATG-----GAAGTA-TG-C-TCA--GG-TGGTACATGGAAG--TACCGGCA-C--TATTACCCAGCAGCAAT-CCCCCGGAAAAA-CAGGG-ACA--TC-AG--ATGGGTCC--AAAACCTTTTCCAAGTCTTT--ATG-TCATTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTGAA-ATAC-CACGG-G-GC--ACCGG--TTG-CNTTTNTANATGTCTTATAGGTCGGTATCCNGCCTATTCTCCCCTGGTTCGGATTTGC-AATTGCGGCCCATGAACATC-CACTCTCCCAGATTAGACCGGGC-CTCTTTTGTCACAAGNGCGTGGCATTNGTTGTGTAACTGATGTTAAAA-CGTGCA-CAGTGT-GTAAAT-C-TGGACATGTT-TN--G-T--GTGGAACGTGCACA-----GTG--TGTAAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AG-TGT-AAA--T-CTGGA-CATGTTTTGTTCTGG-AACGTGCA-CAGTATGTAAATC-T-GG-ACATGTTTTGTTATGTTNCTTTGCAGCATAAAAAAATATCAGATAAAATGGTGTGGCACTATATACATCTNTTAATTATTATGCAAGCAGGAAACCTACGCNAANTACATCTGGACATATGNATATGCGG-TCGTATACATTTAAGTAGNTATCTAGTGTTTGTTAAATTAA
Reference ( gi|1 ) : GGTCAAGTGTTTCAGACATGC-TGTATAGCGTTTTTAATCGTTAAA-TCAACTCGATTTATACAGATTTATCGTT--G-ATT-----GCAGAAAA--GCT--ATCTCC-GTCA-ATCAATGAGGTG----TCGCTTGCCTCAACACAC-CAAACTG-TCTACAGTTTTGTTT-TTC-CATCCATTTT-ATTACATCCTATTAACTC-GTGGTTGCTAAAGCATCC-AACTTTATTACATCCGAG-CTCGAATCAGTT--GGATT-GTTGTTTCATA-ATG-TGCTTACTGTGAATACATTTCAAA-TTAACGATTTTTTGCATT-CAGAATTCCAACGTTTTCACCGCTTTTTGATATGC-TATCCAATCAATAGTTTTCGCCTTTTTTTTGATCCAGAGCAGTGAACA-CCTATTAACTTGGTTACAACGCACGT-CTACTCCGATTAGGATATAT--TAAAGCTTGGTTAC-AACCTCATAGATAATATAAATCA-A-A--AATG-TTGGGCCTG-AT-TGTAAGTTCTGG-CAAGTG-CTACATGTAGTTTTCG-ACAAAGCGCCATAACAAGCTTAAGAGGCCCAGTGT-GAGCATAGGTACTCCATCACG-CAAGTTGTATAAATCTTTA-CAAAGTCAAA-TATTTGGGCTAGGGTAGCTGGGGAAATGTTAAT----CACCCAAAATGCTA-AA-AT-TTCAAT-ACTAGCGT-CAACTCCCTATACTGTGGA---GGTGGGCGC------ATATGTTTTTT------TGGGG------ATT-T---GTTACTCGG-GTCATGGGCG--AGTCCATCATATT--CG-ATTGGCTGATGG--C-GGACCAGGAGGA-TGACTAAAGGAATATTTGGACCATCA-TTCTGGCTCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGATGGAGGGGCTGT-GCAAA-GATTGGTGGC---C--AAG-TTA-GGC-CGGT-AAATTGTCTACA--TGTCTGCACGGTA-CAATGTA--AAG-ATGT---ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTT-GGTTTCTCTTATCCAG-CTCTTTT-AAAC-G--GAGGGGAGACTGTGTCTGGAG-TGTCTCA-G----TGTGTACATG-----GAAGTA-TG-C-TCA--G--TGGTACATGGAAG--TA-CGGC--C--TATTA-CCAGCAGCAAT-CCCCCGGAGGAA-TAGGGAACA--TC-AG--ATGGGTCC--AAA--CAATTCCAAGTCCTTAAATG-TCA--TGCACACATT-TAGACTTCCGGC--GCCT-GTG---ATACACACGG-G-GCG-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTAT-CGGTCTA---TCTCCTGGTTCAGATTTGCTAATTGCGG-C-ATGA-CATCGCTCTCTCCCA-ATTAGACTCGGCGGTCTTTTGTGACATGTGCGTGGCATTGGTTGTGTAACTGATATTAAAA-CGTGCAACAGTGTTGTAAAT-C-TGGACATG---TA--G-T--GTGGACAGTGCAC------GTGGTTG-AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AG-TGT-TAA--T-CTGG--CGTGTTTTGTTCTGG-AACGTGTA-CA-TATGTAAATC-T-GG-ACATGTTTTGTTATGTTAC-TTGCAGCAT---AA--TATCA-AT-AA-TGGT-T-GCACT-TATACATCTTGTAATTAGTATGCAAG-AGG-AACCTACGCGA-CT--ATCTGGGAATATATA-ATGCGG-TCGTATTCATTTAAGTAGCTATTTAGTGTTTGTTAAATTAA
gi|2 : GTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTAC-----TATCATC--G-GTTTGTATGCAGAAAA--GGT---TATCC-GCAG-ATCAA---GATG----GTTCTTGCCTCAA---AC--AAACTGGTCTACAGTT--GTTTGTTCGTATCCATTTTTATCAC---CTAT-AACCA-CTGGTTG-TAAAGCATCCTAACTTT--TACACCCGAGTCTCGAATC---T--AGCTTAGTTGTT-CATACATGATGCTTAC-GT-AATACATTTCAAAATT--TGTTTTTATGCATTTCAGAATCC--ACGTTTCCCACGTTTTTTGA-ATA---ATCCA-TCAATAGTTT-CGTTCTTGTTTTG-CCCTGATCA-TGAACAACTTAT-AACTTG-TTACAAC--ACGTGCTACTCC-ATTAAT-TATAT--TAA--CT--GTACC-AACCTCA-AAATA-CATAA-TCATATA--AATGATTGGGCCTG-AT-T-TA-GTTCTGGACA--TGACTACATGTA-TTTCCGCACA---CACC-TAACA--CTTAGATTGCACAGTA--GAGC-TAGGT---TCATCACGGCAAGT-----AACACTTTA-CAAA-TCAAA-TATT---GCAGAGGTA-CTG---ACAAGTTAATAATCCACCCAA--TGCTA-AA-ACATTCAAT-ACAAGCCTTCAACTCCTCATACTG---A---GG--GGC---------TAT-TGTTTC------TGGAG--------T-T----TTACTCGATGTCATG--CG--AGTCCATCATA----CG-ATGGGCTGATT---C-GAACCAGGGGAA-T----AAAGGAATATT-GGACCATCA-TT---GC--CGTC--TCCTCCCC-G--TC-TGTC--C-AGTTAC-ATGGAGG--CTGT-GCAAACG---GGTGGC---C--AAG-TTATAGC-CGGTTAAATT-TCTACA--TGTCTGTACGGTA-CA---TT--AAC-ATGG---ATGGGA---C-CGCTAGCCTCAG-CAC-G--CTT-A---TCTCTCATCCAACCTCTTTT-TAAC-G--GAGG---AACGGTG---GAAG-TG-CTC--GTACTTGAGCTCATGCTCATGAAGC-----C-TCA--G--T-GTACATGGTAG--TACCGGCA-C--TATTA-CCAGCAGCAATGCCCCCAAAGGAAGTAGGG-ACA--TC-AGGTATGGGTCCAAAAA--CAATTCCAA-TCCT--AATG-TCAT-TGCACACATTCTTGACTT-CGGCCTGGCT-GCGA--ATACGCAC------CGCACCGT--TTC-CCTTTATAAATA--TTAT--GTCGGTAT-CCGTCTA---TCCCCT--TTCAA--TTGC-AATTGCGGCC-ATGA-CATC-CACTCTCCCAGATTA-ACCGGGC-CTCTTTTGTCACA--AGCGT-GCATTGGTTGTG-AACTGATGTTAAAA-CGTGC-AC-GTG-TGTAAATCC-TGGACATGTTTTG--T-T--GTGGAACGTGCACAATAGTGTGGT----AATCCT-GACATTGTTTTGTT-GTTGGAAAGTTGCACAGTAG-TGT-AAA--TCCTGGA-CATGTTTTGTTCTGGTAACGTG-A-CAGTATGT-AATC-TGGG-ACATGTTTTGTTATGTTTCTTTGCAGCATAAAAA--TATCAGATAAA-TGGTGTGGCACTATATACATCTGTTAATTATTATGCAAGCAGGAAACCTA-GCCA-ATACATCTGG----ATAAA-ATG--------AT-------AGTA-TTATCTAGTGTTTGTTAAA
gi|13 : TACAG--TTATCGTTTTGTATT-----GCAGAAAAAAGTT--ATC-CC-GCAG-ATCAA-GAGATGGT--TCACTTGCCTCAACACA--CAAACTG-TC
gi|3 : AGAAAAAGGTT--ATC--C-AGCAGATCGA-GAGGTGGT--TCGCTTGCCTCAACACAC--AAACTG-TCTTCAGTTTGTTTT-TTC-GATCCATTTT-ATTACATCCTCATAGATCAGTGGTTGATAAGGCATCA-AGCTT--TTACA-CTGAG-CTCGAATACGCTAGGGATT-G----TTCATACATG-TTCTTGCTGT-AATACATTTCAAA-T----GTTTTCCCACAT-------TTCC--------CACCG-TTTCTAATATGCATATCTAATCAATAG-TTTCGTC-TTGTTTTGAT
gi|14 : caaaAGAGAA--GGTTAATCTCCCGTAT-ATTGA-GAGGTGGTTTTCGTTGGCCTCGAAACATACAGACTG-TCTACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacaccattacaagcttagatggcccagtgtagagcataggtctccatcacgcaagcaatgttcaccaaatcaaactattggcagagttactgggacaatgttaatccaccccaaatgctaaacatttcaatataagcctcaattccctatacgtgggggcgggggcacatatatatgttttttggggggattgtgttactcgggtcatggcgagtctattgtatcgatggctgatggcggaccaggggagataaaggaatatttccccgtctgtcctgtacgatggagggctgtgcaaagttggtggccaaattaggccggtaaattgtctacattgtctgtacggcacaatgtaaacatagattggagattcgctagcctcagcacg
gi|7 : aaCTTGGTTACAAC--ACGT-CTACTCC-ATTAATATATAT--TTAA-CTTG-TTACCAACCTCAAAAATA-CATAA-TCA-A-AGAAATG-TTGGGCCTGGATCTGTA-GTT-TGG-CAA-TG-CTACATGTAGTTT-CGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATC-CG-CAAGTTA-ACCAATCTTTACCAAATCCAAC-TATT--GGC-AGGGTTACTGGGACAATGTTAATC---CACCC-AAATGCTACAC-AT-TTCAATAACAAGCCT-CAACTCCCTATAC-GTGGAGGGGGGGGGCGC------ATATGTTTTTTTTTCTCTGGGG------ATTGT---GTTACTCGG-GTCAT-GGCG--AGT
gi|12 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--TAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-A--AATG-CTGGGCCTG-AT-TGT-AGTTCTGG-CAA-CG-CTACATGTAG-TTTCGCACA---CACCATAACA
gi|9 : TTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATATATTAA--CTTG-TTACCAACCTCA-AAATA-CATAA-TCATA-A--AATG-TGGGGCCTG-AT-TGT-AGTTCTGA-TAA-TG-CTACATGTAGTTTC---ACACA-CACCATAACAAGCTT---------AGTGTAGAACATAGGT-CTCCATCACG-CAAGTTAAAC-AATCTTCA-CCAAATGAAACTATT--GGC-AGGGTTACTGGG
gi|3 : CACCATTACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGC------AATGTTCA-CCAAATCAAACTATT--GGC-AGAGTTACTGGGACAATGTTAATC---CACCCCAAATGCTA-AACAT-TTCAAT-ATAAGCCT-CAATTCCCTATAC-GTGGG---GGCGGGGGCACATATATATGTTTTTTG-----GGGGG------ATTGT---GTTACTCGG-GTCAT-GGCG--AGTCTATTGTA-T--CG-A-TGGCTGATGG--C-GGACCAGG-GGA--GA-TAAAGGAATATTT----------------CCCCGT---------CT-G--TC----C--T-G--TACGATGGA-GGGCTGT-GCAAA-G-TTGGTGGC---C--AAA-TTA-GGC-CGGT-AAATTGTCTACAT-TGTCTGTACGGCA-CAATGTA--AAC-ATAG---ATTGGAGATT-CGCTAGCCTCAG-CACGacag
gi|4 : caaaagaaaaaggttatccagcagatcgagaggtggttcgcttgcctcaacacacaaactgtcttcagtttgttttttcgatccattttattacatcctcatagatcagtggttgataaggcatcaagcttttacactgagctcgaatacgctagggattgttcatacatgttcttgctgtaatacatttcaaatgttttcccacatttcccaccgtttctaatatgcatatctaatcaatagtttcgtcttgttttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaTTTTT------CGGGGGGGGGTAGT-TCGGGTTA----G-GTCATTGGCGTTAGTCCA-CGTAT---CG--CTGGCTGTTGG--CTGGACCCAGGGGA--GA-TAAAGGAAGATTTGGACCATCA-T-CTGGCCGGGTTGTTTTTCCCT-GGTTC-TGTC--TTG--TACGACGGAGGA--TGT-GTGAA-G-----TGGC---CGCAAG-CTA-GGTTCGGT-A---TCTTTG-----GTCT---TGGTATCAAAGTACAAAT-ATGG---ATTGGAGATT-CGCTAGCATCAGGCACG---CTA-GGTTTC-CTC-TCCAC-CTTCTTT-AAACTG--GAGGGGAGACTGTGTCTGGAGATGCCTCAGG----TG-GTACATG-----GAAGTA-TGAC-TCACCGGTTGGTACATGGAAGCTTACCGGCA-CAATATTA-CCAGCAGCAAT--CCCCGGA-AAA-CAGGG-ACA--TC-AG--ATGGGTCC--AAAACCTTTTCCAAGTCTTT--ATG-TCA--TTC-CGCATT-TGGACTTCCGGC--GCCT-GTGAA-ATAC-CACGG-GAGCC-ACCGG--TTGCCGTTTTTACATGTCTTATAGGTTGGTATCCGGCTTATTCTCCCCTGGTTCGGATTT
gi|8 : cccaatcctaatccagtttaattttaactcgTCATGG-CG--AGTCCATCGTATC-----ATGTGCTGATGGGAC-GGACCAGGGGAA---ATAAAAGGAATATTTG----------------CCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGATAGAGGG-CTGTTACAAA-G--TGGTGGC---C--ACG-TTA-GGC-CGGT-AAATTGTCTACACTTGTCTGTACGGTA-C-ATGTA--TCA-TTCG---ATTGGAGATTCCGCTAG-CTCAG-CATGGGCCTTCGTTTTCTTCTCTCCAC-CTCTTTG-AAAC-GTAGAGGGGAGACTGTGC-------TGCCTCA-G----TTGGTACATG-----GATGTA-TG-tgcatgtggccacatcctccattttc
gi|10 : CGTCACATTGCCGTGTTGA--GATCG--C-GACCCAGGTGGAGCGA-TAAAG--ATAATTCGACCATCACTTCTG--CCCGTTGTTTTTCCCCTG--TCCTGTCCTT-G--TACGACGGAGGACATGT-G--AA-G-TTG--GGCCCGC--AAGTTTA-GTC-GGGT-AAAATGTCTTTG---GTTTGC---GAA-C--TGTA--AA--ATATGGGATTGGAGAg
gi|5 : cctTTGTTTTCCCCT-G--CC-TGTC--TTG--TACGACGGAGGGATTGT-G--AA-G-TTGGCCGC------AAG-CTA-GGT-CGGT-A---------TA--TGTCTTT--GGTA-CAATGTA--AAATATG----ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTA-GG-TTCTCTC-TCCAC-CTCTTTTAAAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTCA-G----TG-GTACATG-----GAAGTATTGCC-TCAG-G--TGGTACATGG-AG--TACCGGCAAC--TATTACCCAGCA-CAAT-CCCCCGGAAAAA-CAGG--ACA--TC-AG--ATGGGTCC--AAAACCTTTTCCAAGTCTTT--ATGATCATTTTCCCGCATT-TGGACTTCCGGC--GCCT-GTGA--ATAC-CACGGCG-GC--ACCGGGTTTG-C
gi|15 : catcttgcctgtTTTCT-TTATCCAC-CTCTTTT-AAAC-G--G---GGAGACTGTGTATGGAG-TGCCTTG-G-----GTGTccg
gi|18 : tTCCAC-CTCTTTT-AAAC-G--GAGGGGAGACTGtac
gi|11 : cTG-----GAAGTA-TG-CCTCA--GG-TGGTACATGGAAG--TA-CGGCA-C--TATTACCCAGCAGCAA--ATCCCGGAAAAA-CTGGG-ACAGTTCAAG--ATGGGTCCT-AAA--CCTTTCCAAGTCTTT--ATG-TCATTTGC-CGCATT-TGGACTTCCGGC--GCCTAGTGAAAATGC-CACGG-G-G
gi|6 : tggtacatggaatATTTGC-AAT-GCGG-CCATGAACATC-CACTCTCCCA-ATTAGAC------------------AAGTGCGTGGCATTTGTTGTGTAACTGATGTTAAAAACGTGCA-CAGTGT-GTAATC-C-TGGACATG---TTTTG-TTTGTGGAACGTGCACA-----GTG--TGTAAATCCTGGACA-TGTTTTGTT-C-TGGAACG-TGTAC---AGATGT-AAA--T-CTGGGACATGTTTTGTTATGT-TACTTGCAGCA-TA---AAAT
gi|17 : ga-CGTGCA-CAGTGT-GTAAAT-CCTGGACATGTT-TA--GTT--GTGatcaataaatggtgtgcactatatacatcttttaattattatgcaagcaggaacctacgcaaactatctggacatatgtatatgcggatcgtatacatttaagtagctatctagtgtttgttaaatta
gi|6 : GTGCACA-----GTG--TG-TAATCCTGGACA-TGTTTTGTTTG-TGGAACG-TGCAC---AG-TGTGTAAATC-CTGGA-CATGTTTTGTTCTGG-AACGTGTA-CA-GATGTAAATC-T-GGGACATGTTTTGTTATGTTAC-TTGCAGCAT---AAAATATCA-AT-AAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCAAACT--ATCTGGACATATGTATATGCGGATCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTA
gi|17 : gaatttgcaatgcggccatgaacatccactctcccaattagacaagtgcgtggcatttgttgtgtaactgatgttaaaaacGTGCACA-----GTG--TGTAAATCCTGGACA-TGTTTAGTT-G-TG
gi|17 : cCGTGCA-CAGTGTGTAAATCCT-GG-ACATGTTTAGTTGTG
gi|16 : -TCGTATACATTTAAGTGGATATCTAGTGTTTGTTAGATTAA
Alignments
lowQualScore : 333 2 1 2 1 2 2222 6666666666666 1111 11 22 111 2 22 11 22 1 333333 1 1 2 2222222 333333 2 1 44444 2 1 2222222222 1 22 2 1 2 1 2 11 11 11 1 22 11 111 222222 1 11 111 1 1 1 1 1 1 1 11 444444 1 222222 33333333 222222222 1 1111111 1111 22222222 1111111 111 111 111 11 11 11 11 111111 1 4444444444 11 1 11 1 11 11 11 11 11 1111111 11 22 1 11 1 11 1 333 33 1 333 1 1 22222222 1 2 3333333 11 11 2222222222222222222222222 1 111 2222222 2222 11 1 1 1 1 222 11 111 1 1 11 2 2 666 4444 2 2 3333 2222222 1111
lowQualScore : 555 0 2 5 0 4 5 0 4 4444 1111111111111 3 0 1 4444 8 8 11 5 66 8 555 3 00 7 7 0 6 55 44 1 1 5 0 000000 3 2 3 7777777 1 000000 6 3 1 0 7 3 00000 222 3 2 0000000000 2 0 7 22 7 3 2 7 4 3 0 5 0 11 8 8 11 11 8 11 0 88 0 0 8 8 6 6 8 8 8 11 8 8 33 111 0 44 5 0 0 88 0 8 555555 88 8 0 11 8 3 777 2 0 3 0 0 0 0 0 0 22 222222 0 111111 3 88888888 999999999 8 9 99 0 9999999 2 99 6 9 1111 6 6 3 55 99999999 7 11 5 77 5 2222222 99999 5 222 3 777 5 5 5 5 5 1 4 22 555 999 0 5 66 77 22 66 6 6 11 1 99 66 5 5 5 77 88 6 1 99 5 5 999999 99 6 3 8 6666666666 8 6 11 0 88 11 0 0 11 8 11 8 11 0 22 11 8 7777777 8 11 8 88 6 8 11 0 33 0 1 1 1 111 00 6 4 0 777 6 66 0 0 333 99999999 0 3 6 3333333 6 22 6 33 9999999999999999999999999 3 999 6 3333333 0000 3 33 3 2 0 0 0 3 333 88 666 7 3 7 44 7 6 1 3 222 5555 6 3 7 1 6 3 6 88 5555 3 1111111 3333 9 33
lowQualScore : ... . . . . . . . . .... ............. . . . .... . . .. . .. . ... . .. . . . . .. .. . . . . ...... . . . ....... . ...... . . . . . . ..... ... . . .......... . . . .. . . . . . . . . . .. . . .. .. . .. . .. . . . . . . . . . .. . . .. ... . .. . . . .. . . ...... .. . . .. . . ... . . . . . . . . . .. ...... . ...... . ........ ......... . . .. . ....... . .. . . .... . . . .. ........ . .. . .. . ....... ..... . ... . ... . . . . . . . .. ... ... . . .. .. .. .. . . .. . .. .. . . . .. .. . . .. . . ...... .. . . . .......... . . .. . .. .. . . .. . .. . .. . .. .. . ....... . .. . .. . . .. . .. . . . . ... .. . . . ... . .. . . ... ........ . . . ....... . .. . .. ......................... . ... . ....... .... . .. . . . . . . ... .. ... . . . .. . . . . ... .... . . . . . . . .. .... . ....... .... . ..
lowQualScore : 000 0 5 5 0 0 5 0 0 0000 0000000000000 2 8 0 4444 0 0 00 0 22 0 000 3 77 3 3 7 7 00 33 0 0 3 7 000000 3 0 7 7777777 0 777777 7 7 0 7 3 3 00000 333 7 0 3333333333 3 7 3 00 3 7 0 3 0 0 0 5 0 00 0 0 88 00 0 00 8 88 8 8 0 0 0 0 0 0 0 22 0 0 22 777 8 88 0 8 8 88 8 0 000000 88 8 0 00 0 2 555 5 0 2 0 0 0 0 0 0 55 000000 0 888888 2 22222222 888888888 0 2 22 8 4444444 5 22 7 3 2222 7 7 5 00 00000000 1 77 7 99 7 6666666 66666 7 111 6 999 7 7 7 7 0 6 3 00 000 111 1 7 44 99 44 44 7 7 00 0 22 55 7 7 7 99 33 7 0 77 7 7 222222 22 7 3 0 2222222222 0 0 00 0 88 00 0 8 00 0 00 0 00 8 66 00 0 0000000 0 00 0 44 0 0 00 0 88 0 0 0 0 000 33 7 0 7 333 7 88 0 0 555 88888888 0 3 7 7777777 7 33 7 00 7777777777777777777777777 3 777 7 0000000 8888 2 88 2 5 0 0 0 3 333 33 777 3 3 3 00 3 7 0 7 000 3333 7 3 3 0 7 7 7 33 3333 7 7777777 3333 8 55
consensus : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCGTC--GTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGG--TTCGCTTGCCTCAACACA--CAAACT-GTCTACAGTTT-GTTT-TTCGCATCCATTTTTATTACATCCT-ATA-ACCAGTGGTTG-TAAAGCATCC-AAC-TT-TTACACCCGAG-CTCGAAT--GCTA-GGATTGGTTG-TTCATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGCTTTTTGATATGC-TATCCAATCAATAG-TTTCGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCAC-GCAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGT---TAATCCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCC-TCAACTCCCTATAC-GTGGAGG--GG-GGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GGCG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGG-TAAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCC-ACCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------G--TA-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATG-ACATC-CACTCTCCCA-ATTAGACC-GGC--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT---AAAATATCA-AT-AAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAACT--ATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
Reference ( family-3026 ) : NGTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTACAG--TTATCGTCTTGTGTTTGTATGCAGAAAAAGGNTA-TCTCC-GCAGATCGA-GAGGTGG--TTCGCTTGCCTCAACACAC-CAAACT-GTCTACAGTTTGNTTTGTTCGNATCCATTTTTATCACATCCTNNTAGNCNANTGGTTGATAAGGCATCNTAGCTTT-TTACACCCGAGTCTCGAATNCGCTAGGGNTTAGTTGTTTCATACATGATNCTTGCTGT-AATACATTTCAAAATT--TGTTTTCNCGCATTTCAGAATCCCA-CGTTTCCNNCGTTTTCTGATATGCATATCCAATCAATAGTTTTCGTCCTTGTTTTGACCCTGATCA-TGAACAACTTAT-AACTTGGTTACAAC--ACGT-CTACTCC-ATTAANATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCAC-GCAAGTTA-A-CAA-TCTTCACNAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGT---TAATCCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCC-TCAACTCCCTATAC-GTGGA----GG-GGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCATGGGCG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTTGTTTTTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGG-TAAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTNGGTTT--CTCTCATCC-ACCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------G--TA-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CNTTTNTANATGTCTTATAGGTCGGTATCCNGCCTATTCTCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGAACATC-CACTCTCCCAGATTAGACCGGGC-CTCTTTTGTCACAAGNGCGTGGCATTNGTTGTGTAACTGATGTTAAAACGTGC-ACAGTG-TGTAAAT-CTGGACATGTTTNG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACATGTTTTGTTCTGG-AACGTGCACAGTATGTAAATCT-GGACATGTTTTGTTATGTTNCTTTGCAGCATAAAAAAATATCAGATAAAATGGTGTGGCACTATATACATCTNTTAATTATTATGCAAGCAGGAAACCTACGCNAANTACATCTGGACATATGNATATGCGG-TCGTATACATTTAAGTAGNTATCTAGTGTTTGTTAAATTAA
gi|1 : GTCAAGTGTTTCAGACATGC-TGTATAGCGTTTTTAATCGTTAAA-TCAACTCGATTTATACAGATTTATCGT----TGATTG----CAGAAAA--GCTA-TCTCC-GTCAATCAATGAGGTG----TCGCTTGCCTCAACACAC-CAAACT-GTCTACAGTTTTGTTT-TTC-CATCCATTTT-ATTACATCCTATTA-ACTCGTGGTTGCTAAAGCATCC-AACTTTATTACATCCGAG-CTCGAATCAGTT--GGATT-GTTGTTTCATA-ATG-TGCTTACTGTGAATACATTTCAAA-TTAACGATTTTTTGCATT-CAGAATTCCAACGTTTTCACCGCTTTTTGATATGC-TATCCAATCAATAGTTTTCGCCTTTTTTTTGATCCAGAGCAGTGAACA-CCTATTAACTTGGTTACAACGCACGT-CTACTCCGATTAGGATATAT--T-AAAGCTTGGTTAC-AACCTCATAGATAATATAAATCA-A-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAAGTG-CTACATGTAGTTTTCG-ACAAAGCGCCATAACAAGCTTAAGAGGCCCAGTGT-GAGCATAGGTACTCCATCAC-GCAAGTTGTA-TAAATCTTTACAAAGTCAAA-TATTTGGGCTAGGGTAGCTGGGGAAATGT---TAATC-A-CCCAAAATGCTA-AA-AT-TTCAAT-ACTAGCG-TCAACTCCCTATACTGTGGA----GGTGGGCGC----ATATGTTTTTT------TGGGGA--------TT-TGTTACTCGG-GTCATGGGCG--AGTCCATCATATTCGATTGGCTGATGG--C-GGACCAGGAGGATG--ACT-AAAGGAATATTTGGACCATCA-TTCTGGCTCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGATGGAGGGGCTG-TGCAAA-GATTGGTGGCC---AAGTT-A-GGC-CGG-TAAATTGTCTACA--TGTCTGCACGGTA-CAATGTA--AAG-ATGT-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTTATCC-AGCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGTCTC-AG-TGTGTACATGGAA------G--TA-TG-C-TCA----------GT-GGTACATGGAAG--TA-CGGC--C--TATTA-CCAGCAGCAATCCCCCGGAG--GAATAGGGAACA--TC-AG--ATGGGTCCAAA--CAATTCCAAGTCCTTAAATG-TCA---TGCACACATT-TAGACTTCCGGC--GCCT-GTG---ATACACACGG-GG--CGACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTAT-CGGTCTA---TCTCCTGGTTCAGA-TTTGCTAATTGCGG---CATG-ACATCGCTCTCTCCCA-ATTAGACTCGGCGGTCTTTTGTGACATGTGCGTGGCATTGGTTGTGTAACTGATATTAAAACGTGCAACAGTGTTGTAAAT-CTGGACATG--TAG-TGTGGACAGTGCAC----GTG-GTTGAAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--TAAT-C-TGG-CGTGTTTTGTTCTGG-AACGTGTACA-TATGTAAATCT-GGACATGTTTTGTTATGTTAC-TTGCAGCAT-----AATATCA-AT--AATGGT-T-GCACT-TATACATCTTGTAATTAGTATGCAAG-AGG-AACCTACGCG-ACT--ATCTGGGAATATATA-ATGCGG-TCGTATTCATTTAAGTAGCTATTTAGTGTTTGTTAAATTAA
gi|10 : gGATCG--C-GACCCAGGTGGA-GCGA-T-AAAG--ATAATTCGACCATCACTTCTG--CCCGTTGTTTTTCCCCTG--TCCTGTCCTT-G--TACGACGGAGGA-C-A-TGTGAA-G-TTGG--GCCCGCAAGTTTA-GTC-GGG-TAAAATGTCTTTG---GTTTG--CGA-A-C--TGTA--AAATATGGGATTGGAGA
gi|11 : cctcgtcacattgccgtgttga-TG-GTACATGGAATTGGAAG--TA-TG-CCTCA---------GGT-GGTACATGGAAG--TA-CGGC-AC--TATTACCCAGCAGCAA-ATCCCGGAA--AAACTGGG-ACAGTTCAAG--ATGGGTCCTAAACC-TTTCCAAGTCTTT--ATG-TCA-TTTGC-CGCATT-TGGACTTCCGGC--GCCTAGTGAAAATGC-CACGG-GG--
gi|12 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-CTGGGCCTG-AT-TGT-AGTTCTGGCAA-CG-CTACATGTAGTTT-CGCACA---CACCATAACA
gi|13 : TACAG--TTATCGTTTTGTATT-----GCAGAAAAAAGTTA-TC-CC-GCAGATCAA-GAGATGG--TTCACTTGCCTCAACACA--CAAACT-GTC
gi|14 : AGAAGGTTAATCTCCCGTATATTGA-GAGGTGGTTTTCGTTGGCCTCGAAACATACAGACT-GTCTAC
gi|15 : aaagTTT--CTTT-ATCC-ACCTCTTTTAAA-C-G--G---GGAGACTGTGTATGGAG-TGCCTTGGG-TG-TTAC
gi|16 : t-TCGTATACATTTAAGTGGATATCTAGTGTTTGTTAGATTAA
gi|17 : CGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTAGTT-G-TGtatg
gi|18 : TCC-ACCTCTTTTAAA-C-G--GAGGGGAGACTG
gi|2 : cGTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTAC-----TATCATC--G-GTTTGTATGCAG-AAAAGGTTA---TCC-GCAGATCAA-GA--TGG--TT--CTTGCCTCAA-A----CAAACTGGTCTACAGTT--GTTTGTTCGTATCCATTTTTATCA---CCT-ATA-ACCACTGGTTG-TAAAGCATCCTAAC-TT-TTACACCCGAGTCTCGAAT---CTA--GCTTAGTTG-TTCATACATGATGCTTAC-GT-AATACATTTCAAAATT--TGTTTTTATGCATTTCAGAAT-CCA-CGTTTCCCACGTTTTTTGA-ATA---ATCC-ATCAATAG-TTTCGTTCTTGTTTTG-CCCTGATCA-TGAACAACTTAT-AACTT-GTTACAAC--ACGTGCTACTCC-ATTAAT-TATAT--T-AA--C-TG--TACCAACCTC-AAAATA-CATAA-TCATATAAATGATTGGGCCTG-AT-T-T-AGTTCTGGACA-TGACTACATGTA-TTTCCGCACA---CACC-TAACA--CTTAGATTGCACA--GTAGAGC-TAGG---TTCATCACGGCAAG-TA-A-CA---CTTTAC-AAATCAAA-TATT---GC-AGAGGTACT--GACAA-GTTAATAATCCA-CCC-AA-TGCTA-AA-ACATTCAAT-ACAAGCCTTCAACTCCTCATAC--TG------AG-GGGC-T----AT-TGTTTCT----------GGA----------GTTTTACTCGATGTCAT--GCG--AGTCCATCATA--CGATGGGCTGAT-T--C-GAACCAGGGG---A--A-T-AAAGGAATA-TTGGACCATCA-T--TG---CCGT--CTCCTCCCC-G--TC-TGTC--C-AGTTAC-ATGGA-GG-CTG-TGCAAACG---GGTGGCC---AAGTT-ATAGC-CGGTTAAATT-TCTACA--TGTCTGTACGGTA-CA---TT--AAC-ATGG-ATGGGA---C-CGCTAGCCTCAG-CAC-G--CTTA---T--CTCTCATCCAACCTCTTTTTAA-C-G--GAGG---AACGGTG---GAAG-TG-CTC-------GTACTTG--A------GCTCA-TG-C-TCATGAAGCCTCAGT--GTACATGGTAG--TACCGGC-AC--TATTA-CCAGCAGCAATGCCCCCAAAGGAAGTAGGG-ACA--TC-AGGTATGGGTCCAAAAACAATTCCAA-TCCTA--ATG-TCA-TTGCA-CACATTCTTGACTT-CGGCCTGGCT-GCG--AATACGCAC---CG--C-ACCGT--TTC-CCTTTATAAATA--TTAT--GTCGGTATCC-GTCTA---TCCCCT--TTC--A-ATTGC-AATTGCGG-C-CATG-ACATC-CACTCTCCCAGATTA-ACCGGGC-CTCTTTTGTCACAA--GCGT-GCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAATCCTGGACATGTTTTGTTGTGGAACGTGCACAATAGTGTGG--TAATCCT-GACATTGTTTTGTT-GTTGGAAAGTTGCACAGTAGTGT--AAATCC-TGGACATGTTTTGTTCTGGTAACGTG-ACAGTATGT-AATCTGGGACATGTTTTGTTATGTTTCTTTGCAGCAT--AAAAATATCAGAT-AAATGGTGTGGCACTATATACATCTGTTAATTATTATGCAAGCAGGAAACCTA-GCCAA-TACATCTGGATA-----AAATG--------AT-------AGTA-TTATCTAGTGTTTGTTAAA
gi|3 : AGAAAAAGGTTA-TC-CA-GCAGATCGA-GAGGTGG--TTCGCTTGCCTCAACACA--CAAACT-GTCTTCAGTTTGTTTT-TTCG-ATCCA-TTTTATTACATCCTCATAGATCAGTGGTTGATAAGGCATCA-AGC-TT-TTACA-CTGAG-CTCGAATACGCTAGGGATTG-----TTCATACATG-TTCTTGCTGT-AATACATTTCAAA-----TGTTTTCCCACATT------TCCCA-C--------CG-TTTCTAATATGCATATCTAATCAATAG-TTTCGT-CTTGTTTTGA
gi|3 : caaaCA---CACCATTACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCAC-GCAAG------CAA-TGTTCACCAAATCAAACTATT--GGC-AGAGTTACTGGGACAATGT---TAATCCACCCCAAA-TGCTA-AACAT-TTCAAT-ATAAGCC-TCAATTCCCTATAC-GTGGGGGC-GG-GGGCACATATATATGTTTTTTG-----GGGGGA--------TTGTGTTACTCGG-GTCAT-GGCG--AGTCTATTGTA-TCGA-TGGCTGATGG--C-GGACCA-GGGGA-G--A-T-AAAGGAATATTT----------------CCCCGT---------CT-G--TC----C--T-G--TACGATGGAGGG-CTG-TGCAAA-G-TTGGTGGCC---AAATT-A-GGC-CGG-TAAATTGTCTACAT-TGTCTGTACGGCA-CAATGTA--AAC-ATAG-ATTGGAGATT-CGCTAGCCTCAG-CACGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacaccattacaagcttagatggcccagtgtagagcataggtctccatcacgcaagcaatgttcaccaaatcaaactattggcagagttactgggacaatgttaatccaccccaaatgctaaacatttcaatataagcctcaattccctatacgtgggggcgggggcacatatatatgttttttggggggattgtgttactcgggtcatggcgagtctattgtatcgatggctgatggcggaccaggggagataaaggaatatttccccgtctgtcctgtacgatggagggctgtgcaaagttggtggccaaattaggccggtaaattgtctacattgtctgtacggcacaatgtaaacatagattggagattcgctagcctcagcacg
gi|4 : caaaagaaaaaggttatccagcagatcgagaggtggttcgcttgcctcaacacacaaactgtcttcagtttgttttttcgatccattttattacatcctcatagatcagtggttgataaggcatcaagcttttacactgagctcgaatacgctagggattgttcatacatgttcttgctgtaatacatttcaaatgttttcccacatttcccaccgtttctaatatgcatatctaatcaatagtttcgtcttgttttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTT------CGGGGGGGGGTAGTTCGGGTTA----G-GTCATTGGCGTTAGTCCA-CGTAT-CG-CTGGCTGTTGG--CTGGACCCAGGGGA-G--A-T-AAAGGAAGATTTGGACCATCA-T-CTGGCCGGGTTGTTTTTCCCT-GGTTC-TGTC--TTG--TACGACGGAGGA--TG-TGTGAA-G-T----GGCCGC-AAGCT-A-GGTTCGG-TA---TCTTTG-----GTCT---TGGTATCAAAGTACAAAT-ATGG-ATTGGAGATT-CGCTAGCATCAGGCACG---CTAGGTTT--C-CTC-TCC-ACCTTCTTTAAA-CTG--GAGGGGAGACTGTGTCTGGAGATGCCTCAGG-TG-GTACATGGAA------G--TA-TGAC-TCACC-------GGTTGGTACATGGAAGCTTACCGGC-ACAATATTACC-AGCAGCAATCCCC--GGA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATG-TCA-TT--C-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GAGCC-ACCGG--TTGCCGTTTTTACATGTCTTATAGGTTGGTATCCGGCTTATTCTCCCCTGGTTCGGATTTTGC-A--TGTGGCCACAT---CCTC-CATTTTC
gi|5 : cccaatcctaatccagtttaattttaactcgTCTTGCCTGTTTGTTTTCCCCT-G--CC-TGTC--TTG--TACGACGGAGGG-AT--TGTGAA-G-TTGGCCGC----AAGCT-A-GGT-CGG-TA---------TA--TGTCTTT--GGTA-CAATGTA--AAATATG--ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTAGGTT---CTCTC-TCC-ACCTCTTTTAAAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-AG-TG-GTACATGGAA------G--TATTGCC-TCA---------GGT-GGTACATGG-AG--TACCGGCAAC--TATTACCCAGCA-CAATCCCCCGGAA--AAACA-GG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATGATCATTTTCC-CGCATT-TGGACTTCCGGC--GCCT-GTG--AATAC-CACGGCGG--C-ACCGGGTTTG-C
gi|6 : caGAA-TTTGC-AAT-GCGGCC--ATGAACATC-CACTCTCCCA-ATTAGAC------------------AAGTGCGTGGCAT---TTGT--------------------------TG-TGTAA---CTG---ATGTTAAA------AACGTGCAC---AGTGTGT--AA-TCCTGGACA-TGTTTTGTTTG-TGGAACG-TGCAC---AGTGTGTAAAT-CCTGGACATGTTTTGTTCTGG-AACGTGTACAG-ATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT---AAAATATCA-AT-AAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCAAACT--ATCTGGACATATGTATATGCGGATCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAccg
gi|7 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAATATATAT--TTAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCAAAGAAATG-TTGGGCCTGGATCTGTA-GTT-TGGCAA-TG-CTACATGTAGTTTC-GCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATC-C-GCAAGTTA-ACCAA-TCTTTACCAAATCCAACTATT--GGC-AGGGTTACTGGGACAATGT---TAATCCA-CCCAAA-TGCTACAC-AT-TTCAATAACAAGCC-TCAACTCCCTATAC-GTGGAGGGGGG-GGGCGC----ATATGTTTTTTTTTCTCTGGGGA--------TTGTGTTACTCGG-GTCAT-GGCG--AGT
gi|8 : TCATGG-CG--AGTCCATCGTATC--ATGTGCTGATGGGAC-GGACCA-GGGGA-A--A-TAAAAGGAATATTTG----------------CCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGATAGAGGG-CTGTTACAAA-G--TGGTGGCC---ACGTT-A-GGC-CGG-TAAATTGTCTACACTTGTCTGTACGGTA-C-ATGTA--TCA-TTCG-ATTGGAGATTCCGCTAG-CTCAG-CATGGGCCTTCGTTTTCTTCTC-TCC-ACCTCTTTGAAA-C-GTAGAGGGGAGACTGTGC-------TGCCTC-AGTTG-GTACATGGAT------G--TA-TG-
gi|9 : TTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATATATT-AA--CTTG-TTACCAACCTCAAAA-TA-CATAA-TCATA-AAATG-TGGGGCCTG-AT-TGTA-GTTCTGATAA-TG-CTACATGTAGTTTC-ACACA---CACCATAACAAGCTTAG---------TGTAGAACATAGGT-CTCCATCAC-GCAAGTTA-AACAA-TCTTCACCAAATGAAACTATT--GGC-AGGGTTACTGGGACAg
Alignments
lowQualScore : 222 1 1 1 1 1 2222 333333333333 1 2 11 11 2222 1 11 1 111 2 1 11 1 1 5555555555555 1 1 1 333333 22 333333333333333 22 1 1 1 1 1 11 11 11 1 1 22 11 111 222222 1 11 111 1 11 1 1 1 1 1 11 2222222 222222 3333333 22222222 11 1111111 111111 2222222 1111111 111111 111 111 111 11 222 11 1111 111111 1 4444444444 11 1 11 1 11 11 11 11 11 1111111 11 11 1 11111 1 11 1 11 11 222 1 1 22 1 1 1 666666666666666666 1 22222222 111 2222222 2222 11 1 1 1 1 222 11 111 1 11 1 22 1 1 1 11 1 11111 1111
lowQualScore : 111 5 1 5 5 1 5 5 1 4444 444444444444 0 8 0 8 8 11 3 11 8 8 4444 3 88 7 7 7 3 777 6 3 88 2 3 4444444444444 3 6 3 7 3 333333 11 00 6 777777777777777 7 00 7 3 2 7 1 1 5 5 5 11 8 8 0 11 8 11 0 8 0 0 8 8 6 6 8 8 8 11 8 8 33 111 0 44 0 0 8 0 0 8 555555 88 5 0 11 8 3 777 2 0 33 0 0 0 0 0 22 5555555 2 444444 2222222 99999999 00 8 6 6 99 0 9999999 99 6 9 888888 6 55 4444444 33 33 00 5 77 5 2222222 111111 5 222 3 777 5 5 5 5 5 1 4 22 555 999 0 5 5 77 22 66 6 6 111 1 99 66 5 5 5 77 88 6 5555 5 999999 99 6 3 8 6666666666 8 6 11 0 88 11 0 0 11 8 11 8 11 0 00 11 8 7777777 8 11 8 88 0 6 77777 0 33 0 88 88 6 6 333 6 66 0 0 333 2 55 2 0 0 3 6 999999999999999999 6 6 6 3 7 44444444 999 6 1111111 0000 3 33 3 2 0 0 0 3 333 88 666 7 0 3 7 44 7 6 3 00 3 7 6 3 7 6 3 6 11 3 1 7 44444 3333 9 22
lowQualScore : ... . . . . . . . . .... ............ . . . . . .. . .. . . .... . .. . . . . ... . . .. . . ............. . . . . . ...... .. .. . ............... . .. . . . . . . . . . .. . . . .. . .. . . . . . . . . . . . .. . . .. ... . .. . . . . . . ...... .. . . .. . . ... . . .. . . . . . .. ....... . ...... ....... ........ .. . . . .. . ....... .. . . ...... . .. ....... .. .. .. . .. . ....... ...... . ... . ... . . . . . . . .. ... ... . . . .. .. .. . . ... . .. .. . . . .. .. . .... . ...... .. . . . .......... . . .. . .. .. . . .. . .. . .. . .. .. . ....... . .. . .. . . ..... . .. . .. .. . . ... . .. . . ... . .. . . . . . .................. . . . . . ........ ... . ....... .... . .. . . . . . . ... .. ... . . . . .. . . . .. . . . . . . . . .. . . . ..... .... . ..
lowQualScore : 000 0 0 5 5 0 5 0 0 0000 777777777777 6 0 4 0 0 00 2 00 0 0 0000 3 77 3 3 3 3 777 7 3 33 0 3 3333333333333 3 7 3 3 3 777777 77 00 7 777777777777777 3 00 3 3 0 3 0 0 0 5 5 00 0 0 8 00 0 00 8 0 8 6 0 0 0 0 0 0 0 22 0 0 22 777 8 88 8 8 0 8 8 0 000000 88 0 0 00 0 2 555 5 0 22 0 0 0 0 0 55 8888888 5 000000 4444444 00000000 66 0 7 7 22 8 4444444 22 7 3 555555 7 00 7777777 77 00 99 7 99 7 6666666 333333 7 111 6 999 7 7 7 7 0 6 3 00 000 111 1 7 0 99 44 44 7 7 000 4 22 55 7 7 7 99 33 7 4444 7 222222 22 7 3 0 2222222222 0 0 00 0 88 00 0 8 00 0 00 0 00 8 22 00 0 0000000 0 00 0 66 8 0 22222 0 88 0 33 33 7 7 333 7 88 0 0 555 5 00 5 0 0 3 7 000000000000000000 7 7 7 3 3 77777777 777 7 7777777 8888 2 88 2 5 0 0 0 3 333 33 777 3 7 3 3 00 3 7 3 77 3 3 7 3 3 7 3 7 00 3 0 3 33333 3333 8 88
consensus : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCGTC-TGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGG-TTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
Reference ( family-3026 ) : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCGTCGTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGGATTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
gi|1 : GTCAAGTGTTTCAGACATGC-TGTATAGCGTTTTTAATCGTTAAA-TCAACTCGATTTATACAGATTTATCGT--TGATTG----CAGAAAA--GCTA-TCTCC-GTCAATCAATGAGGTG--T--CGCTTGCCTC--AACACACCAAACTG-TCTACAGTTTTG-TTT-TTC-CATCCATTTT-ATTACATCCT-ATTA-ACTCGTGGTTGCTAAAGCATCC-AACTTTATTACATCCGAG-CTCGAATCAGTT-GGATTG-TTGTTTCATA-ATG-TGCTTACTGTGAATACATTTCAAA-TTAACGATTTTTTGCATT-CAGAATTCCAACGTTTTCACCGC--TTTTTGATATGC-TATCCAATCAATAGTTTTCGCCTTTTTTTTGATCCAGAGCAGTGAACA-CCTATTAACTTGGTTACAACGCACGT-CTACTCCGATTAGGATATAT--T-AAAGCTTGGTTAC-AACCTCATAGATAATATAAATCA-A-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAAGTG-CTACATGTAGTTTTCG-ACAAAGCGCCATAACAAGCTTAAGAGGCCCAGTGT-GAGCATAGGTACTCCATCACG-CAAGTTGTA-TAAATCTTTACAAAGTCAAA-TATTTGGGCTAGGGTAGCTGGGGAAATGTTAAT---C-A-CCCAAAATGCTA-AA-AT-TTCAAT-ACTAGCGT-CAACTCCCTATACTGTGGA--GG-TGGG-CGC----ATATGTTTTTT------TGGGGA--------TT-TGTTACTCGG-GTCAT-GGGCG--AGTCCATCATATTCGATTGGCTGATGG--C-GGACCAGGAGGATG--ACT-AAAGGAATATTTGGACCATCA-TTCTGGCTCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGATGGAGGGGCTG-TGCAAA-GATTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGCACGGTA-CAATGTA--AAG-ATGT-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTTATCCA-GCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGTCTC-AG-TGTGTACATGGAA------GT--A-TG-C-TCA----------GT-GGTACATGGAAG--TA-CGGC--C--TATTA-CCAGCAGCAATCCCCCGGAG--GAATAGGGAACA--TC-AG--ATGGGTCCAAA--CAATTCCAAGTCCTTAAATG-TCA---TGCACACATT-TAGACTTCCGGC--GCCT-GTG---ATACACACGG-GG--CGACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTAT-CGGTCTA---TCTCCTGGTTCAGA-TTTGCTAATTGCGG---CATGA-CATCGCTCTCTCCCA-ATTAGACTCGG--CGGTCTTTTGTGACATGTGCGTGGCATTGGTTGTGTAACTGATATTAAAACGTGCAACAGTGTTGTAAAT-CTGGACATG--TAG-TGTGGACAGTGCAC----GTG-GTTGAAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--TAAT-C-TGG-CGTGTTTTGTTCTGG-AACGTGTACA-TATGTAAATCT-GGACATGTTTTGTTATGTTAC-TTGCAGCAT---AATATCA-AT-AATGGT-T-GCACT-TATACATCTTGTAATTAGTATGCAAG-AGG-AACCTACGCG-AC-TATCTGGGAATATATA-ATGCGG-TCGTATTCATTTAAGTAGCTATTTAGTGTTTGTTAAATTAA
gi|10 : gGATCG--C-GACCCAGGTGGA-GCGA-T-AAAG--ATAATTCGACCATCACTTCTG--CCCGTTGTTTTTCCCCTG--TCCTGTCCTT-G--TACGACGGAGGA-C-A-TGTGAA-G-TTGG--GCCCGCAAGTTTA-GTC-GGGT-AAAATGTCTTTG---GTTTG--CGA-A-C--TGTA--AAATATGGGATTGGAGA
gi|11 : cctcgtcacattgccgtgttga-TG-GTACATGGAATTGGAAGT--A-TG-CCTCA---------GGT-GGTACATGGAAG--TA-CGGC-AC--TATTACCCAGCAGCAA-ATCCCGGAA--AAACTGGG-ACAGTTCAAG--ATGGGTCCTAAACC-TTTCCAAGTCTTT--ATG-TCA-TTTGC-CGCATT-TGGACTTCCGGC--GCCTAGTGAAAATGC-CACGG-GG--
gi|12 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-CTGGGCCTG-AT-TGT-AGTTCTGGCAA-CG-CTACATGTAGTTT-CGCACA---CACCATAACA
gi|13 : TACAG--TTATCGTTTTGTATT---GCAGAAAAAAGTTA-TC-CC-GCAGATCAA-GAGATGGTT--CACTTGCCTC--AACACAC-AAACTG-TC
gi|14 : AGAAGGTTAATCTCCCGTATATTGA-GAGGTGGTTTTCGTTGGCCTCGAAACATAC-AGACTG-TCTAC
gi|15 : aaagTTT--CTTT-ATCCA-CCTCTTTTAAA-C-G--G---GGAGACTGTGTATGGAG-TGCCTTGGG-TG-TTAC
gi|16 : t-TCGTATACATTTAAGTGGATATCTAGTGTTTGTTAGATTAA
gi|17 : CGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTAGTT-G-TGtatg
gi|18 : TCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTG
gi|2 : cGTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTAC-----TATCATCG-GTTTGTATGCAGAAAA-GGTTA-TC--C-GCAGATCAA-GA--TGGTT--C--TTGCCTC--AA---AC-AAACTGGTCTACAGTT--G-TTTGTTCGTATCCATTTTTATCAC---CT-AT-A-ACCACTGGTTG-TAAAGCATCCTAACTTT--TACACCCGAGTCTCGAAT---CTAGC-TTAGTTGTT-CATACATGATGCTTAC-GT-AATACATTTCAAAATT--TGTTTTTATGCATTTCAGAATCC-A-CGTTTCC--CACGTTTTTTGA-ATA---ATCCA-TCAATAGTTT-CGTTCTTGTTTTG-CCCTGATCA-TGAACAACTTAT-AACTTG-TTACAAC--ACGTGCTACTCC-ATTAAT-TATAT--T-AA--CT-G-T-ACCAACCTCAAAA-TA-CATAA-TCATATAAATGATTGGGCCTG-AT-T-TA-GTTCTGGACA-TGACTACATGTA-TTTCCGCACA---CACC-TAACA--CTTAGATTGCACAGT--AGAGC-TAGGT-T--CATCACGGCAAGT-A-A-CA---CTTTAC-AAATCAAA-TATT--G-C-AGAGGTACTG--ACAA-GTTAATAATCCA-CCCAA--TGCTA-AA-ACATTCAAT-ACAAGCCTTCAACTCCTCATAC--TGA-------GGGGC---------TATTGTTT------CTGGAG--------TT---TTACTCGATGTCAT-G--CG--AGTCCATCATA--CGATGGGCTGATT---C-GAACCAGGGGAA------T-AAAGGAATATT-GGACCATCA-TT---GCC--GTC--TCCTCCCC-G--TC-TGTC--C-AGTTAC-ATGGAGG--CTG-TGCAAACG---GGTGGCC---AAGTT-ATAGC-CGGTTAAATT-TCTACA--TGTCTGTACGGTA-CATT-----AAC-ATGG-ATGGGA---C-CGCTAGCCTCAG-CACG---CTTA---T--CTCTCATCCAACCTCTTTTTAA-C-G--GAGGA---ACGGTG---GAAG-TGC-TC-G------TACTTG--A------GCTCA-TG-C-TCATGAAGCCTCAGT-G-TACATGGTAG--TACCGGC-AC--TATTACC-AGCAGCAATGCCCCCAAAGGAAGTAGGG-ACA--TC-AGGTATGGGTCCAAAAACAATTCCAA-TCCTA--ATG-TCA-TTGCA-CACATTCTTGACTTC-GGCCTGGCT-GCG-AA-TACGCACCG-----C-ACCGT--TTC-CCTTTATAAATA--TTAT--GTCGGTATCCG-TCTA---TCCCCT--TTC--A-ATTGC-AATTGCGGCC--ATGA-CATC-CACTCTCCCAGATTA-AC-CGGGCC--TCTTTTGTCACAA--GCGT-GCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAATCCTGGACATGTTTTGTTGTGGAACGTGCACAATAGTGTGG--TAATCCT-GACATTGTTTTGTT-GTTGGAAAGTTGCACAGTAGTGT--AAATCC-TGGACATGTTTTGTTCTGGTAACGTG-ACAGTATGT-AATCTGGGACATGTTTTGTTATGTTTCTTTGCAGCATAAAAATATCAGATAAATGGTGTGGCACTATATACATCTGTTAATTATTATGCAAGCAGGAAACCTA-GCCAATACATCTGGATA-A---A-ATG--------AT-------AGTA-TTATCTAGTGTTTGTTAAA
gi|3 : AGAAAAAGGTTA-TC-CA-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTTCAGTTT-GTTTT-TTCG-ATCCA-TTTTATTACATCCTCAT-AGATCAGTGGTTGATAAGGCATCA-AGCTTT--TACA-CTGAG-CTCGAATACGCTAGG---GATTGTT-CATACATG-TTCTTGCTGT-AATACATTTCAAA-T----GTTTTCCCACATT------TCCCA-------C--CG---TTTCTAATATGCATATCTAATCAATAGTTT-CGT-CTTGTTTTGA
gi|3 : caaaCA---CACCATTACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAG------CAA-TGTTCACCAAATCAAACTATT--GGC-AGAGTTACTGGGACAATGTTAAT---CCACCCCAAA-TGCTA-AACAT-TTCAAT-ATAAGCCT-CAATTCCCTATAC-GTGGG--GGCGGGGGCACATATATATGTTTTTTG-----GGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCTATTGTA-TCGA-TGGCTGATGG--C-GGACCA-GGGGA-G--A-T-AAAGGAATATTT----------------CCCCGT---------CT-G--TC----C--T-G--TACGATGGAGGG-CTG-TGCAAA-G-TTGGTGGCC---AAATT-A-GGC-CGGT-AAATTGTCTACAT-TGTCTGTACGGCA-CAATGTA--AAC-ATAG-ATTGGAGATT-CGCTAGCCTCAG-CACGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacaccattacaagcttagatggcccagtgtagagcataggtctccatcacgcaagcaatgttcaccaaatcaaactattggcagagttactgggacaatgttaatccaccccaaatgctaaacatttcaatataagcctcaattccctatacgtgggggcgggggcacatatatatgttttttggggggattgtgttactcgggtcatggcgagtctattgtatcgatggctgatggcggaccaggggagataaaggaatatttccccgtctgtcctgtacgatggagggctgtgcaaagttggtggccaaattaggccggtaaattgtctacattgtctgtacggcacaatgtaaacatagattggagattcgctagcctcagcacg
gi|4 : caaaagaaaaaggttatccagcagatcgagaggtggttcgcttgcctcaacacacaaactgtcttcagtttgttttttcgatccattttattacatcctcatagatcagtggttgataaggcatcaagcttttacactgagctcgaatacgctagggattgttcatacatgttcttgctgtaatacatttcaaatgttttcccacatttcccaccgtttctaatatgcatatctaatcaatagtttcgtcttgttttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTT------CGGGGGGGGGTAGTTCGGGTTA----G-GTCATTGG-CGTTAGTCCA-CGTAT-CG-CTGGCTGTTGG--CTGGACCCAGGGGA-G--A-T-AAAGGAAGATTTGGACCATCA-T-CTGGCCGGGTTGTTTTTCCCT-GGTTC-TGTC--TTG--TACGACGGAGGA--TG-TGTGAA-G-T----GGCCGC-AAGCT-A-GGTTCGGT-A---TCTTTG-----GTCT---TGGTATCAAAGTACAAAT-ATGG-ATTGGAGATT-CGCTAGCATCAGGCACG---CTAGGTTT--C-CTC-TCCA-CCTTCTTTAAA-CTG--GAGGGGAGACTGTGTCTGGAGATGCCTCAGG-TG-GTACATGGAA------GT--A-TGAC-TCACC-------GGTTGGTACATGGAAGCTTACCGGC-ACAATATTACC-AGCAGCAATCCCC--GGA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATG-TCA-TT--C-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GAGCC-ACCGG--TTGCCGTTTTTACATGTCTTATAGGTTGGTATCCGGCTTATTCTCCCCTGGTTCGGATTTTGC-A--TGTGGCCACAT---CCTC-CATTTTC
gi|5 : cccaatcctaatccagtttaattttaactcgTCTTGCCTGTTTGTTTTCCCCT-G--CC-TGTC--TTG--TACGACGGAGGG-AT--TGTGAA-G-TTGGCCGC----AAGCT-A-GGT-CGGT-A---------TA--TGTCTTT--GGTA-CAATGTA--AAATATG--ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTAGGTT---CTCTC-TCCA-CCTCTTTTAAAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-AG-TG-GTACATGGAA------GT--ATTGCC-TCA---------GGT-GGTACATGG-AG--TACCGGCAAC--TATTACCCAGCA-CAATCCCCCGGAA--AAACA-GG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATGATCATTTTCC-CGCATT-TGGACTTCCGGC--GCCT-GTG--AATAC-CACGGCGG--C-ACCGGGTTTG-C
gi|6 : caGAA-TTTGC-AAT-GCGGCC--ATGAACATC-CACTCTCCCA-ATTAGAC--------------------AAGTGCGTGGCATT--------------TGTT---------------G-TGTAA---CTG---ATGTTAAA------AACGTGCAC---AGTGTGT--AA-TCCTGGACA-TGTTTTGTTTG-TGGAACG-TGCAC---AGTGTGTAAAT-CCTGGACATGTTTTGTTCTGG-AACGTGTACAG-ATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCAAAC-TATCTGGACATATGTATATGCGGATCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAccg
gi|7 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAATATATAT--TTAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCAAAGAAATG-TTGGGCCTGGATCTGTA-GTT-TGGCAA-TG-CTACATGTAGTTTC-GCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATC-CG-CAAGTTA-ACCAA-TCTTTACCAAATCCAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTACAC-AT-TTCAATAACAAGCCT-CAACTCCCTATAC-GTGGAGGGG-GGGGGCGC----ATATGTTTTTTTTTCTCTGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGT
gi|8 : TCAT-GG-CG--AGTCCATCGTATC--ATGTGCTGATGGGAC-GGACCA-GGGGA-A--A-TAAAAGGAATATTTG----------------CCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGATAGAGGG-CTGTTACAAA-G--TGGTGGCC---ACGTT-A-GGC-CGGT-AAATTGTCTACACTTGTCTGTACGGTA-C-ATGTA--TCA-TTCG-ATTGGAGATTCCGCTAG-CTCAG-CATGGGCCTTCGTTTTCTTCTC-TCCA-CCTCTTTGAAA-C-GTAGAGGGGAGACTGTGC-------TGCCTC-AGTTG-GTACATGGAT------GT--A-TG-
gi|9 : TTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATATATT-AA--CTTG-TTACCAACCTCAAAA-TA-CATAA-TCATA-AAATG-TGGGGCCTG-AT-TGTA-GTTCTGATAA-TG-CTACATGTAGTTTC-ACACA---CACCATAACAAGCTTAG---------TGTAGAACATAGGT-CTCCATCACG-CAAGTTA-AACAA-TCTTCACCAAATGAAACTATT--GGC-AGGGTTACTGGGACAg
Alignments
lowQualScore : 222 1 1 1 1 1 2222 111 3333 1 2 11 11 2222 1 11 1 111 2 1 11 1 1 444 11111 1 1 1 333333 22 333333333333333 22 1 1 1 1 1 11 11 11 1 1 22 11 111 222222 1 11 111 1 11 1 1 1 1 1 11 2222222 222222 3333333 22222222 11 1111111 111111 2222222 1111111 111111 111 111 111 11 222 11 1111 111111 1 4444444444 11 1 11 1 11 11 11 11 11 1111111 11 11 1 11111 1 11 1 11 11 222 1 1 22 1 1 1 666666666666666666 1 22222222 111 2222222 2222 11 1 1 1 1 222 11 111 1 11 1 22 1 1 1 11 1 11111 1111
lowQualScore : 111 5 1 5 5 1 5 5 1 4444 666 0000 0 8 0 8 8 11 3 11 8 8 4444 3 88 7 7 7 3 777 6 3 88 2 3 333 77777 3 6 3 7 3 333333 11 00 6 777777777777777 7 00 7 3 2 7 1 1 5 5 5 11 8 8 0 11 8 11 0 8 0 0 8 8 6 6 8 8 8 11 8 8 33 111 0 44 0 0 8 0 0 8 555555 88 5 0 11 8 3 777 2 0 33 0 0 0 0 0 22 5555555 2 444444 2222222 99999999 00 8 6 6 99 0 9999999 99 6 9 888888 6 55 4444444 33 77 00 5 77 5 2222222 111111 5 222 3 777 5 5 5 5 5 1 4 22 555 999 0 5 5 77 22 66 6 6 111 1 99 66 5 5 5 77 88 6 5555 5 999999 99 6 3 8 6666666666 8 6 11 0 88 11 0 0 11 8 11 8 11 0 00 11 8 7777777 8 11 8 88 0 6 77777 0 33 0 88 88 6 6 333 6 66 0 0 333 2 55 2 0 0 3 6 999999999999999999 6 6 6 3 7 44444444 999 6 1111111 0000 3 33 3 2 0 0 0 3 333 88 666 7 0 3 7 44 7 6 3 00 3 7 6 3 7 6 3 6 11 3 1 7 44444 3333 9 22
lowQualScore : ... . . . . . . . . .... ... .... . . . . . .. . .. . . .... . .. . . . . ... . . .. . . ... ..... . . . . . ...... .. .. . ............... . .. . . . . . . . . . .. . . . .. . .. . . . . . . . . . . . .. . . .. ... . .. . . . . . . ...... .. . . .. . . ... . . .. . . . . . .. ....... . ...... ....... ........ .. . . . .. . ....... .. . . ...... . .. ....... .. .. .. . .. . ....... ...... . ... . ... . . . . . . . .. ... ... . . . .. .. .. . . ... . .. .. . . . .. .. . .... . ...... .. . . . .......... . . .. . .. .. . . .. . .. . .. . .. .. . ....... . .. . .. . . ..... . .. . .. .. . . ... . .. . . ... . .. . . . . . .................. . . . . . ........ ... . ....... .... . .. . . . . . . ... .. ... . . . . .. . . . .. . . . . . . . . .. . . . ..... .... . ..
lowQualScore : 000 0 0 5 5 0 5 0 0 0000 333 0000 6 0 4 0 0 00 2 00 0 0 0000 3 77 3 3 3 3 777 7 3 33 0 3 333 33333 3 7 3 3 3 777777 77 00 7 777777777777777 3 00 3 3 0 3 0 0 0 5 5 00 0 0 8 00 0 00 8 0 8 6 0 0 0 0 0 0 0 22 0 0 22 777 8 88 8 8 0 8 8 0 000000 88 0 0 00 0 2 555 5 0 22 0 0 0 0 0 55 8888888 5 000000 4444444 00000000 66 0 7 7 22 8 4444444 22 7 3 555555 7 00 7777777 77 00 99 7 99 7 6666666 333333 7 111 6 999 7 7 7 7 0 6 3 00 000 111 1 7 0 99 44 44 7 7 000 4 22 55 7 7 7 99 33 7 4444 7 222222 22 7 3 0 2222222222 0 0 00 0 88 00 0 8 00 0 00 0 00 8 22 00 0 0000000 0 00 0 66 8 0 22222 0 88 0 33 33 7 7 333 7 88 0 0 555 5 00 5 0 0 3 7 000000000000000000 7 7 7 3 3 77777777 777 7 7777777 8888 2 88 2 5 0 0 0 3 333 33 777 3 7 3 3 00 3 7 3 77 3 3 7 3 3 7 3 7 00 3 0 3 33333 3333 8 88
consensus : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
Reference ( family-3026 ) : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGGTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
gi|1 : GTCAAGTGTTTCAGACATGC-TGTATAGCGTTTTTAATCGTTAAA-TCAACTCGATTTATACAGATTTATCG-T-TGATTG----CAGAAAA--GCTA-TCTCC-GTCAATCAATGAGGTG--T--CGCTTGCCTC--AACACACCAAACTG-TCTACAGTTTTG-TTT-TTC-CATCCATTTT-ATTACATCCT-ATTA-ACTCGTGGTTGCTAAAGCATCC-AACTTTATTACATCCGAG-CTCGAATCAGTTGGATTG-TTGTTTCATA-ATG-TGCTTACTGTGAATACATTTCAAA-TTAACGATTTTTTGCATT-CAGAATTCCAACGTTTTCACCGC--TTTTTGATATGC-TATCCAATCAATAGTTTTCGCCTTTTTTTTGATCCAGAGCAGTGAACA-CCTATTAACTTGGTTACAACGCACGT-CTACTCCGATTAGGATATAT--T-AAAGCTTGGTTAC-AACCTCATAGATAATATAAATCA-A-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAAGTG-CTACATGTAGTTTTCG-ACAAAGCGCCATAACAAGCTTAAGAGGCCCAGTGT-GAGCATAGGTACTCCATCACG-CAAGTTGTA-TAAATCTTTACAAAGTCAAA-TATTTGGGCTAGGGTAGCTGGGGAAATGTTAAT---C-A-CCCAAAATGCTA-AA-AT-TTCAAT-ACTAGCGT-CAACTCCCTATACTGTGGA--GG-TGGG-CGC----ATATGTTTTTT------TGGGGA--------TT-TGTTACTCGG-GTCAT-GGGCG--AGTCCATCATATTCGATTGGCTGATGG--C-GGACCAGGAGGATG--ACT-AAAGGAATATTTGGACCATCA-TTCTGGCTCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGATGGAGGGGCTG-TGCAAA-GATTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGCACGGTA-CAATGTA--AAG-ATGT-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTTATCCA-GCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGTCTC-AG-TGTGTACATGGAA------GT--A-TG-C-TCA----------GT-GGTACATGGAAG--TA-CGGC--C--TATTA-CCAGCAGCAATCCCCCGGAG--GAATAGGGAACA--TC-AG--ATGGGTCCAAA--CAATTCCAAGTCCTTAAATG-TCA---TGCACACATT-TAGACTTCCGGC--GCCT-GTG---ATACACACGG-GG--CGACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTAT-CGGTCTA---TCTCCTGGTTCAGA-TTTGCTAATTGCGG---CATGA-CATCGCTCTCTCCCA-ATTAGACTCGG--CGGTCTTTTGTGACATGTGCGTGGCATTGGTTGTGTAACTGATATTAAAACGTGCAACAGTGTTGTAAAT-CTGGACATG--TAG-TGTGGACAGTGCAC----GTG-GTTGAAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--TAAT-C-TGG-CGTGTTTTGTTCTGG-AACGTGTACA-TATGTAAATCT-GGACATGTTTTGTTATGTTAC-TTGCAGCAT---AATATCA-AT-AATGGT-T-GCACT-TATACATCTTGTAATTAGTATGCAAG-AGG-AACCTACGCG-AC-TATCTGGGAATATATA-ATGCGG-TCGTATTCATTTAAGTAGCTATTTAGTGTTTGTTAAATTAA
gi|10 : gGATCG--C-GACCCAGGTGGA-GCGA-T-AAAG--ATAATTCGACCATCACTTCTG--CCCGTTGTTTTTCCCCTG--TCCTGTCCTT-G--TACGACGGAGGA-C-A-TGTGAA-G-TTGG--GCCCGCAAGTTTA-GTC-GGGT-AAAATGTCTTTG---GTTTG--CGA-A-C--TGTA--AAATATGGGATTGGAGA
gi|11 : cctcgtcacattgccgtgttga-TG-GTACATGGAATTGGAAGT--A-TG-CCTCA---------GGT-GGTACATGGAAG--TA-CGGC-AC--TATTACCCAGCAGCAA-ATCCCGGAA--AAACTGGG-ACAGTTCAAG--ATGGGTCCTAAACC-TTTCCAAGTCTTT--ATG-TCA-TTTGC-CGCATT-TGGACTTCCGGC--GCCTAGTGAAAATGC-CACGG-GG--
gi|12 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-CTGGGCCTG-AT-TGT-AGTTCTGGCAA-CG-CTACATGTAGTTT-CGCACA---CACCATAACA
gi|13 : TACAG--TTATCGTTTTGTATT---GCAGAAAAAAGTTA-TC-CC-GCAGATCAA-GAGATGGTT--CACTTGCCTC--AACACAC-AAACTG-TC
gi|14 : AGAAGGTTAATCTCCCGTATATTGA-GAGGTGGTTTTCGTTGGCCTCGAAACATAC-AGACTG-TCTAC
gi|15 : aaagTTT--CTTT-ATCCA-CCTCTTTTAAA-C-G--G---GGAGACTGTGTATGGAG-TGCCTTGGG-TG-TTAC
gi|16 : t-TCGTATACATTTAAGTGGATATCTAGTGTTTGTTAGATTAA
gi|17 : CGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTAGTT-G-TGtatg
gi|18 : TCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTG
gi|2 : cGTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTAC-----TATCA-TCGGTTTGTATGCAGAAAA-GGTTA-TC--C-GCAGATCAA-GA--TGGTT--C--TTGCCTC--AA---AC-AAACTGGTCTACAGTT--G-TTTGTTCGTATCCATTTTTATCAC---CT-AT-A-ACCACTGGTTG-TAAAGCATCCTAACTTT--TACACCCGAGTCTCGAAT---CTAGCTTAGTTGTT-CATACATGATGCTTAC-GT-AATACATTTCAAAATT--TGTTTTTATGCATTTCAGAATCC-A-CGTTTCC--CACGTTTTTTGA-ATA---ATCCA-TCAATAGTTT-CGTTCTTGTTTTG-CCCTGATCA-TGAACAACTTAT-AACTTG-TTACAAC--ACGTGCTACTCC-ATTAAT-TATAT--T-AA--CT-G-T-ACCAACCTCAAAA-TA-CATAA-TCATATAAATGATTGGGCCTG-AT-T-TA-GTTCTGGACA-TGACTACATGTA-TTTCCGCACA---CACC-TAACA--CTTAGATTGCACAGT--AGAGC-TAGGT-T--CATCACGGCAAGT-A-A-CA---CTTTAC-AAATCAAA-TATT--G-C-AGAGGTACTG--ACAA-GTTAATAATCCA-CCCAA--TGCTA-AA-ACATTCAAT-ACAAGCCTTCAACTCCTCATAC--TGA-------GGGGC---------TATTGTTT------CTGGAG--------TT---TTACTCGATGTCAT-G--CG--AGTCCATCATA--CGATGGGCTGATT---C-GAACCAGGGGAA------T-AAAGGAATATT-GGACCATCA-TT---GCC--GTC--TCCTCCCC-G--TC-TGTC--C-AGTTAC-ATGGAGG--CTG-TGCAAACG---GGTGGCC---AAGTT-ATAGC-CGGTTAAATT-TCTACA--TGTCTGTACGGTA-CATT-----AAC-ATGG-ATGGGA---C-CGCTAGCCTCAG-CACG---CTTA---T--CTCTCATCCAACCTCTTTTTAA-C-G--GAGGA---ACGGTG---GAAG-TGC-TC-G------TACTTG--A------GCTCA-TG-C-TCATGAAGCCTCAGT-G-TACATGGTAG--TACCGGC-AC--TATTACC-AGCAGCAATGCCCCCAAAGGAAGTAGGG-ACA--TC-AGGTATGGGTCCAAAAACAATTCCAA-TCCTA--ATG-TCA-TTGCA-CACATTCTTGACTTC-GGCCTGGCT-GCG-AA-TACGCACCG-----C-ACCGT--TTC-CCTTTATAAATA--TTAT--GTCGGTATCCG-TCTA---TCCCCT--TTC--A-ATTGC-AATTGCGGCC--ATGA-CATC-CACTCTCCCAGATTA-AC-CGGGCC--TCTTTTGTCACAA--GCGT-GCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAATCCTGGACATGTTTTGTTGTGGAACGTGCACAATAGTGTGG--TAATCCT-GACATTGTTTTGTT-GTTGGAAAGTTGCACAGTAGTGT--AAATCC-TGGACATGTTTTGTTCTGGTAACGTG-ACAGTATGT-AATCTGGGACATGTTTTGTTATGTTTCTTTGCAGCATAAAAATATCAGATAAATGGTGTGGCACTATATACATCTGTTAATTATTATGCAAGCAGGAAACCTA-GCCAATACATCTGGATA-A---A-ATG--------AT-------AGTA-TTATCTAGTGTTTGTTAAA
gi|3 : AGAAAAAGGTTA-TC-CA-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTTCAGTTT-GTTTT-TTCG-ATCCA-TTTTATTACATCCTCAT-AGATCAGTGGTTGATAAGGCATCA-AGCTTT--TACA-CTGAG-CTCGAATACGCTAGG--GATTGTT-CATACATG-TTCTTGCTGT-AATACATTTCAAA-T----GTTTTCCCACATT------TCCCA-------C--CG---TTTCTAATATGCATATCTAATCAATAGTTT-CGT-CTTGTTTTGA
gi|3 : caaaCA---CACCATTACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAG------CAA-TGTTCACCAAATCAAACTATT--GGC-AGAGTTACTGGGACAATGTTAAT---CCACCCCAAA-TGCTA-AACAT-TTCAAT-ATAAGCCT-CAATTCCCTATAC-GTGGG--GGCGGGGGCACATATATATGTTTTTTG-----GGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCTATTGTA-TCGA-TGGCTGATGG--C-GGACCA-GGGGA-G--A-T-AAAGGAATATTT----------------CCCCGT---------CT-G--TC----C--T-G--TACGATGGAGGG-CTG-TGCAAA-G-TTGGTGGCC---AAATT-A-GGC-CGGT-AAATTGTCTACAT-TGTCTGTACGGCA-CAATGTA--AAC-ATAG-ATTGGAGATT-CGCTAGCCTCAG-CACGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacaccattacaagcttagatggcccagtgtagagcataggtctccatcacgcaagcaatgttcaccaaatcaaactattggcagagttactgggacaatgttaatccaccccaaatgctaaacatttcaatataagcctcaattccctatacgtgggggcgggggcacatatatatgttttttggggggattgtgttactcgggtcatggcgagtctattgtatcgatggctgatggcggaccaggggagataaaggaatatttccccgtctgtcctgtacgatggagggctgtgcaaagttggtggccaaattaggccggtaaattgtctacattgtctgtacggcacaatgtaaacatagattggagattcgctagcctcagcacg
gi|4 : caaaagaaaaaggttatccagcagatcgagaggtggttcgcttgcctcaacacacaaactgtcttcagtttgttttttcgatccattttattacatcctcatagatcagtggttgataaggcatcaagcttttacactgagctcgaatacgctagggattgttcatacatgttcttgctgtaatacatttcaaatgttttcccacatttcccaccgtttctaatatgcatatctaatcaatagtttcgtcttgttttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTT------CGGGGGGGGGTAGTTCGGGTTA----G-GTCATTGG-CGTTAGTCCA-CGTAT-CG-CTGGCTGTTGG--CTGGACCCAGGGGA-G--A-T-AAAGGAAGATTTGGACCATCA-T-CTGGCCGGGTTGTTTTTCCCT-GGTTC-TGTC--TTG--TACGACGGAGGA--TG-TGTGAA-G-T----GGCCGC-AAGCT-A-GGTTCGGT-A---TCTTTG-----GTCT---TGGTATCAAAGTACAAAT-ATGG-ATTGGAGATT-CGCTAGCATCAGGCACG---CTAGGTTT--C-CTC-TCCA-CCTTCTTTAAA-CTG--GAGGGGAGACTGTGTCTGGAGATGCCTCAGG-TG-GTACATGGAA------GT--A-TGAC-TCACC-------GGTTGGTACATGGAAGCTTACCGGC-ACAATATTACC-AGCAGCAATCCCC--GGA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATG-TCA-TT--C-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GAGCC-ACCGG--TTGCCGTTTTTACATGTCTTATAGGTTGGTATCCGGCTTATTCTCCCCTGGTTCGGATTTTGC-A--TGTGGCCACAT---CCTC-CATTTTC
gi|5 : cccaatcctaatccagtttaattttaactcgTCTTGCCTGTTTGTTTTCCCCT-G--CC-TGTC--TTG--TACGACGGAGGG-AT--TGTGAA-G-TTGGCCGC----AAGCT-A-GGT-CGGT-A---------TA--TGTCTTT--GGTA-CAATGTA--AAATATG--ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTAGGTT---CTCTC-TCCA-CCTCTTTTAAAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-AG-TG-GTACATGGAA------GT--ATTGCC-TCA---------GGT-GGTACATGG-AG--TACCGGCAAC--TATTACCCAGCA-CAATCCCCCGGAA--AAACA-GG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATGATCATTTTCC-CGCATT-TGGACTTCCGGC--GCCT-GTG--AATAC-CACGGCGG--C-ACCGGGTTTG-C
gi|6 : caGAA-TTTGC-AAT-GCGGCC--ATGAACATC-CACTCTCCCA-ATTAGAC--------------------AAGTGCGTGGCATT--------------TGTT---------------G-TGTAA---CTG---ATGTTAAA------AACGTGCAC---AGTGTGT--AA-TCCTGGACA-TGTTTTGTTTG-TGGAACG-TGCAC---AGTGTGTAAAT-CCTGGACATGTTTTGTTCTGG-AACGTGTACAG-ATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCAAAC-TATCTGGACATATGTATATGCGGATCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAccg
gi|7 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAATATATAT--TTAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCAAAGAAATG-TTGGGCCTGGATCTGTA-GTT-TGGCAA-TG-CTACATGTAGTTTC-GCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATC-CG-CAAGTTA-ACCAA-TCTTTACCAAATCCAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTACAC-AT-TTCAATAACAAGCCT-CAACTCCCTATAC-GTGGAGGGG-GGGGGCGC----ATATGTTTTTTTTTCTCTGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGT
gi|8 : TCAT-GG-CG--AGTCCATCGTATC--ATGTGCTGATGGGAC-GGACCA-GGGGA-A--A-TAAAAGGAATATTTG----------------CCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGATAGAGGG-CTGTTACAAA-G--TGGTGGCC---ACGTT-A-GGC-CGGT-AAATTGTCTACACTTGTCTGTACGGTA-C-ATGTA--TCA-TTCG-ATTGGAGATTCCGCTAG-CTCAG-CATGGGCCTTCGTTTTCTTCTC-TCCA-CCTCTTTGAAA-C-GTAGAGGGGAGACTGTGC-------TGCCTC-AGTTG-GTACATGGAT------GT--A-TG-
gi|9 : TTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATATATT-AA--CTTG-TTACCAACCTCAAAA-TA-CATAA-TCATA-AAATG-TGGGGCCTG-AT-TGTA-GTTCTGATAA-TG-CTACATGTAGTTTC-ACACA---CACCATAACAAGCTTAG---------TGTAGAACATAGGT-CTCCATCACG-CAAGTTA-AACAA-TCTTCACCAAATGAAACTATT--GGC-AGGGTTACTGGGACAg
Alignments
lowQualScore : 222 1 1 1 1 1 2222 111 3333 1 2 11 11 2222 1 11 1 111 2 1 11 1 1 444 11111 1 1 1 333333 22 333333333333333 22 1 1 1 1 1 11 11 11 1 1 22 11 111 222222 1 11 111 1 11 1 1 1 1 1 11 2222222 222222 3333333 22222222 11 1111111 111111 2222222 1111111 111111 111 111 111 11 222 11 1111 111111 1 4444444444 11 1 11 1 11 11 11 11 11 1111111 11 11 1 11111 1 11 1 11 11 222 1 1 22 1 1 1 666666666666666666 1 22222222 111 2222222 2222 11 1 1 1 1 222 11 111 1 11 1 22 1 1 1 11 1 11111 1111
lowQualScore : 111 5 1 5 5 1 5 5 1 4444 666 0000 0 8 0 8 8 11 3 11 8 8 4444 3 88 7 7 7 3 777 6 3 88 2 3 333 44444 3 6 3 7 3 333333 11 00 6 777777777777777 7 00 7 3 2 7 1 1 5 5 5 11 8 8 0 11 8 11 0 8 0 0 8 8 6 6 8 8 8 11 8 8 33 111 0 44 0 0 8 0 0 8 555555 88 5 0 11 8 3 777 2 0 33 0 0 0 0 0 22 5555555 2 444444 2222222 99999999 00 8 6 6 99 0 9999999 99 6 9 888888 6 55 4444444 33 77 00 5 77 5 2222222 111111 5 222 3 777 5 5 5 5 5 1 4 22 555 999 0 5 5 77 22 66 6 6 111 1 99 66 5 5 5 77 88 6 5555 5 999999 99 6 3 8 6666666666 8 6 11 0 88 11 0 0 11 8 11 8 11 0 00 11 8 7777777 8 11 8 88 0 6 77777 0 33 0 88 88 6 6 333 6 66 0 0 333 2 55 2 0 0 3 6 999999999999999999 6 6 6 3 7 44444444 999 6 1111111 0000 3 33 3 2 0 0 0 3 333 88 666 7 0 3 7 44 7 6 3 00 3 7 6 3 7 6 3 6 11 3 1 7 44444 3333 9 22
lowQualScore : ... . . . . . . . . .... ... .... . . . . . .. . .. . . .... . .. . . . . ... . . .. . . ... ..... . . . . . ...... .. .. . ............... . .. . . . . . . . . . .. . . . .. . .. . . . . . . . . . . . .. . . .. ... . .. . . . . . . ...... .. . . .. . . ... . . .. . . . . . .. ....... . ...... ....... ........ .. . . . .. . ....... .. . . ...... . .. ....... .. .. .. . .. . ....... ...... . ... . ... . . . . . . . .. ... ... . . . .. .. .. . . ... . .. .. . . . .. .. . .... . ...... .. . . . .......... . . .. . .. .. . . .. . .. . .. . .. .. . ....... . .. . .. . . ..... . .. . .. .. . . ... . .. . . ... . .. . . . . . .................. . . . . . ........ ... . ....... .... . .. . . . . . . ... .. ... . . . . .. . . . .. . . . . . . . . .. . . . ..... .... . ..
lowQualScore : 000 0 0 5 5 0 5 0 0 0000 333 0000 6 0 4 0 0 00 2 00 0 0 0000 3 77 3 3 3 3 777 7 3 33 0 3 333 77777 3 7 3 3 3 777777 77 00 7 777777777777777 3 00 3 3 0 3 0 0 0 5 5 00 0 0 8 00 0 00 8 0 8 6 0 0 0 0 0 0 0 22 0 0 22 777 8 88 8 8 0 8 8 0 000000 88 0 0 00 0 2 555 5 0 22 0 0 0 0 0 55 8888888 5 000000 4444444 00000000 66 0 7 7 22 8 4444444 22 7 3 555555 7 00 7777777 77 00 99 7 99 7 6666666 333333 7 111 6 999 7 7 7 7 0 6 3 00 000 111 1 7 0 99 44 44 7 7 000 4 22 55 7 7 7 99 33 7 4444 7 222222 22 7 3 0 2222222222 0 0 00 0 88 00 0 8 00 0 00 0 00 8 22 00 0 0000000 0 00 0 66 8 0 22222 0 88 0 33 33 7 7 333 7 88 0 0 555 5 00 5 0 0 3 7 000000000000000000 7 7 7 3 3 77777777 777 7 7777777 8888 2 88 2 5 0 0 0 3 333 33 777 3 7 3 3 00 3 7 3 77 3 3 7 3 3 7 3 7 00 3 0 3 33333 3333 8 88
consensus : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
Reference ( family-3026 ) : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
gi|1 : GTCAAGTGTTTCAGACATGC-TGTATAGCGTTTTTAATCGTTAAA-TCAACTCGATTTATACAGATTTATCG-T-TGATTG----CAGAAAA--GCTA-TCTCC-GTCAATCAATGAGGTG--T--CGCTTGCCTC--AACACACCAAACTG-TCTACAGTTTTG-TTT-TTC-CATCCATTTT-ATTACATCCT-ATTA-ACTCGTGGTTGCTAAAGCATCC-AACTTTATTACATCCGAG-CTCGAATCAGTTGGATTG-TTGTTTCATA-ATG-TGCTTACTGTGAATACATTTCAAA-TTAACGATTTTTTGCATT-CAGAATTCCAACGTTTTCACCGC--TTTTTGATATGC-TATCCAATCAATAGTTTTCGCCTTTTTTTTGATCCAGAGCAGTGAACA-CCTATTAACTTGGTTACAACGCACGT-CTACTCCGATTAGGATATAT--T-AAAGCTTGGTTAC-AACCTCATAGATAATATAAATCA-A-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAAGTG-CTACATGTAGTTTTCG-ACAAAGCGCCATAACAAGCTTAAGAGGCCCAGTGT-GAGCATAGGTACTCCATCACG-CAAGTTGTA-TAAATCTTTACAAAGTCAAA-TATTTGGGCTAGGGTAGCTGGGGAAATGTTAAT---C-A-CCCAAAATGCTA-AA-AT-TTCAAT-ACTAGCGT-CAACTCCCTATACTGTGGA--GG-TGGG-CGC----ATATGTTTTTT------TGGGGA--------TT-TGTTACTCGG-GTCAT-GGGCG--AGTCCATCATATTCGATTGGCTGATGG--C-GGACCAGGAGGATG--ACT-AAAGGAATATTTGGACCATCA-TTCTGGCTCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGATGGAGGGGCTG-TGCAAA-GATTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGCACGGTA-CAATGTA--AAG-ATGT-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTTATCCA-GCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGTCTC-AG-TGTGTACATGGAA------GT--A-TG-C-TCA----------GT-GGTACATGGAAG--TA-CGGC--C--TATTA-CCAGCAGCAATCCCCCGGAG--GAATAGGGAACA--TC-AG--ATGGGTCCAAA--CAATTCCAAGTCCTTAAATG-TCA---TGCACACATT-TAGACTTCCGGC--GCCT-GTG---ATACACACGG-GG--CGACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTAT-CGGTCTA---TCTCCTGGTTCAGA-TTTGCTAATTGCGG---CATGA-CATCGCTCTCTCCCA-ATTAGACTCGG--CGGTCTTTTGTGACATGTGCGTGGCATTGGTTGTGTAACTGATATTAAAACGTGCAACAGTGTTGTAAAT-CTGGACATG--TAG-TGTGGACAGTGCAC----GTG-GTTGAAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--TAAT-C-TGG-CGTGTTTTGTTCTGG-AACGTGTACA-TATGTAAATCT-GGACATGTTTTGTTATGTTAC-TTGCAGCAT---AATATCA-AT-AATGGT-T-GCACT-TATACATCTTGTAATTAGTATGCAAG-AGG-AACCTACGCG-AC-TATCTGGGAATATATA-ATGCGG-TCGTATTCATTTAAGTAGCTATTTAGTGTTTGTTAAATTAA
gi|10 : gGATCG--C-GACCCAGGTGGA-GCGA-T-AAAG--ATAATTCGACCATCACTTCTG--CCCGTTGTTTTTCCCCTG--TCCTGTCCTT-G--TACGACGGAGGA-C-A-TGTGAA-G-TTGG--GCCCGCAAGTTTA-GTC-GGGT-AAAATGTCTTTG---GTTTG--CGA-A-C--TGTA--AAATATGGGATTGGAGA
gi|11 : cctcgtcacattgccgtgttga-TG-GTACATGGAATTGGAAGT--A-TG-CCTCA---------GGT-GGTACATGGAAG--TA-CGGC-AC--TATTACCCAGCAGCAA-ATCCCGGAA--AAACTGGG-ACAGTTCAAG--ATGGGTCCTAAACC-TTTCCAAGTCTTT--ATG-TCA-TTTGC-CGCATT-TGGACTTCCGGC--GCCTAGTGAAAATGC-CACGG-GG--
gi|12 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-CTGGGCCTG-AT-TGT-AGTTCTGGCAA-CG-CTACATGTAGTTT-CGCACA---CACCATAACA
gi|13 : TACAG--TTATCGTTTTGTATT---GCAGAAAAAAGTTA-TC-CC-GCAGATCAA-GAGATGGTT--CACTTGCCTC--AACACAC-AAACTG-TC
gi|14 : AGAAGGTTAATCTCCCGTATATTGA-GAGGTGGTTTTCGTTGGCCTCGAAACATAC-AGACTG-TCTAC
gi|15 : aaagTTT--CTTT-ATCCA-CCTCTTTTAAA-C-G--G---GGAGACTGTGTATGGAG-TGCCTTGGG-TG-TTAC
gi|16 : t-TCGTATACATTTAAGTGGATATCTAGTGTTTGTTAGATTAA
gi|17 : CGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTAGTT-G-TGtatg
gi|18 : TCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTG
gi|2 : cGTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTAC-----TATCA-TCGGTTTGTATGCAGAAAA-GGTTA-TC--C-GCAGATCAA-GA--TGGTT--C--TTGCCTC--AA---AC-AAACTGGTCTACAGTT--G-TTTGTTCGTATCCATTTTTATCAC---CT-AT-A-ACCACTGGTTG-TAAAGCATCCTAACTTT--TACACCCGAGTCTCGAAT---CTAGCTTAGTTGTT-CATACATGATGCTTAC-GT-AATACATTTCAAAATT--TGTTTTTATGCATTTCAGAATCC-A-CGTTTCC--CACGTTTTTTGA-ATA---ATCCA-TCAATAGTTT-CGTTCTTGTTTTG-CCCTGATCA-TGAACAACTTAT-AACTTG-TTACAAC--ACGTGCTACTCC-ATTAAT-TATAT--T-AA--CT-G-T-ACCAACCTCAAAA-TA-CATAA-TCATATAAATGATTGGGCCTG-AT-T-TA-GTTCTGGACA-TGACTACATGTA-TTTCCGCACA---CACC-TAACA--CTTAGATTGCACAGT--AGAGC-TAGGT-T--CATCACGGCAAGT-A-A-CA---CTTTAC-AAATCAAA-TATT--G-C-AGAGGTACTG--ACAA-GTTAATAATCCA-CCCAA--TGCTA-AA-ACATTCAAT-ACAAGCCTTCAACTCCTCATAC--TGA-------GGGGC---------TATTGTTT------CTGGAG--------TT---TTACTCGATGTCAT-G--CG--AGTCCATCATA--CGATGGGCTGATT---C-GAACCAGGGGAA------T-AAAGGAATATT-GGACCATCA-TT---GCC--GTC--TCCTCCCC-G--TC-TGTC--C-AGTTAC-ATGGAGG--CTG-TGCAAACG---GGTGGCC---AAGTT-ATAGC-CGGTTAAATT-TCTACA--TGTCTGTACGGTA-CATT-----AAC-ATGG-ATGGGA---C-CGCTAGCCTCAG-CACG---CTTA---T--CTCTCATCCAACCTCTTTTTAA-C-G--GAGGA---ACGGTG---GAAG-TGC-TC-G------TACTTG--A------GCTCA-TG-C-TCATGAAGCCTCAGT-G-TACATGGTAG--TACCGGC-AC--TATTACC-AGCAGCAATGCCCCCAAAGGAAGTAGGG-ACA--TC-AGGTATGGGTCCAAAAACAATTCCAA-TCCTA--ATG-TCA-TTGCA-CACATTCTTGACTTC-GGCCTGGCT-GCG-AA-TACGCACCG-----C-ACCGT--TTC-CCTTTATAAATA--TTAT--GTCGGTATCCG-TCTA---TCCCCT--TTC--A-ATTGC-AATTGCGGCC--ATGA-CATC-CACTCTCCCAGATTA-AC-CGGGCC--TCTTTTGTCACAA--GCGT-GCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAATCCTGGACATGTTTTGTTGTGGAACGTGCACAATAGTGTGG--TAATCCT-GACATTGTTTTGTT-GTTGGAAAGTTGCACAGTAGTGT--AAATCC-TGGACATGTTTTGTTCTGGTAACGTG-ACAGTATGT-AATCTGGGACATGTTTTGTTATGTTTCTTTGCAGCATAAAAATATCAGATAAATGGTGTGGCACTATATACATCTGTTAATTATTATGCAAGCAGGAAACCTA-GCCAATACATCTGGATA-A---A-ATG--------AT-------AGTA-TTATCTAGTGTTTGTTAAA
gi|3 : AGAAAAAGGTTA-TC-CA-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTTCAGTTT-GTTTT-TTCG-ATCCA-TTTTATTACATCCTCAT-AGATCAGTGGTTGATAAGGCATCA-AGCTTT--TACA-CTGAG-CTCGAATACGCTAGG--GATTGTT-CATACATG-TTCTTGCTGT-AATACATTTCAAA-T----GTTTTCCCACATT------TCCCA-------C--CG---TTTCTAATATGCATATCTAATCAATAGTTT-CGT-CTTGTTTTGA
gi|3 : caaaCA---CACCATTACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAG------CAA-TGTTCACCAAATCAAACTATT--GGC-AGAGTTACTGGGACAATGTTAAT---CCACCCCAAA-TGCTA-AACAT-TTCAAT-ATAAGCCT-CAATTCCCTATAC-GTGGG--GGCGGGGGCACATATATATGTTTTTTG-----GGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCTATTGTA-TCGA-TGGCTGATGG--C-GGACCA-GGGGA-G--A-T-AAAGGAATATTT----------------CCCCGT---------CT-G--TC----C--T-G--TACGATGGAGGG-CTG-TGCAAA-G-TTGGTGGCC---AAATT-A-GGC-CGGT-AAATTGTCTACAT-TGTCTGTACGGCA-CAATGTA--AAC-ATAG-ATTGGAGATT-CGCTAGCCTCAG-CACGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacaccattacaagcttagatggcccagtgtagagcataggtctccatcacgcaagcaatgttcaccaaatcaaactattggcagagttactgggacaatgttaatccaccccaaatgctaaacatttcaatataagcctcaattccctatacgtgggggcgggggcacatatatatgttttttggggggattgtgttactcgggtcatggcgagtctattgtatcgatggctgatggcggaccaggggagataaaggaatatttccccgtctgtcctgtacgatggagggctgtgcaaagttggtggccaaattaggccggtaaattgtctacattgtctgtacggcacaatgtaaacatagattggagattcgctagcctcagcacg
gi|4 : caaaagaaaaaggttatccagcagatcgagaggtggttcgcttgcctcaacacacaaactgtcttcagtttgttttttcgatccattttattacatcctcatagatcagtggttgataaggcatcaagcttttacactgagctcgaatacgctagggattgttcatacatgttcttgctgtaatacatttcaaatgttttcccacatttcccaccgtttctaatatgcatatctaatcaatagtttcgtcttgttttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTT------CGGGGGGGGGTAGTTCGGGTTA----G-GTCATTGG-CGTTAGTCCA-CGTAT-CG-CTGGCTGTTGG--CTGGACCCAGGGGA-G--A-T-AAAGGAAGATTTGGACCATCA-T-CTGGCCGGGTTGTTTTTCCCT-GGTTC-TGTC--TTG--TACGACGGAGGA--TG-TGTGAA-G-T----GGCCGC-AAGCT-A-GGTTCGGT-A---TCTTTG-----GTCT---TGGTATCAAAGTACAAAT-ATGG-ATTGGAGATT-CGCTAGCATCAGGCACG---CTAGGTTT--C-CTC-TCCA-CCTTCTTTAAA-CTG--GAGGGGAGACTGTGTCTGGAGATGCCTCAGG-TG-GTACATGGAA------GT--A-TGAC-TCACC-------GGTTGGTACATGGAAGCTTACCGGC-ACAATATTACC-AGCAGCAATCCCC--GGA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATG-TCA-TT--C-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GAGCC-ACCGG--TTGCCGTTTTTACATGTCTTATAGGTTGGTATCCGGCTTATTCTCCCCTGGTTCGGATTTTGC-A--TGTGGCCACAT---CCTC-CATTTTC
gi|5 : cccaatcctaatccagtttaattttaactcgTCTTGCCTGTTTGTTTTCCCCT-G--CC-TGTC--TTG--TACGACGGAGGG-AT--TGTGAA-G-TTGGCCGC----AAGCT-A-GGT-CGGT-A---------TA--TGTCTTT--GGTA-CAATGTA--AAATATG--ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTAGGTT---CTCTC-TCCA-CCTCTTTTAAAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-AG-TG-GTACATGGAA------GT--ATTGCC-TCA---------GGT-GGTACATGG-AG--TACCGGCAAC--TATTACCCAGCA-CAATCCCCCGGAA--AAACA-GG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATGATCATTTTCC-CGCATT-TGGACTTCCGGC--GCCT-GTG--AATAC-CACGGCGG--C-ACCGGGTTTG-C
gi|6 : caGAA-TTTGC-AAT-GCGGCC--ATGAACATC-CACTCTCCCA-ATTAGAC--------------------AAGTGCGTGGCATT--------------TGTT---------------G-TGTAA---CTG---ATGTTAAA------AACGTGCAC---AGTGTGT--AA-TCCTGGACA-TGTTTTGTTTG-TGGAACG-TGCAC---AGTGTGTAAAT-CCTGGACATGTTTTGTTCTGG-AACGTGTACAG-ATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCAAAC-TATCTGGACATATGTATATGCGGATCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAccg
gi|7 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAATATATAT--TTAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCAAAGAAATG-TTGGGCCTGGATCTGTA-GTT-TGGCAA-TG-CTACATGTAGTTTC-GCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATC-CG-CAAGTTA-ACCAA-TCTTTACCAAATCCAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTACAC-AT-TTCAATAACAAGCCT-CAACTCCCTATAC-GTGGAGGGG-GGGGGCGC----ATATGTTTTTTTTTCTCTGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGT
gi|8 : TCAT-GG-CG--AGTCCATCGTATC--ATGTGCTGATGGGAC-GGACCA-GGGGA-A--A-TAAAAGGAATATTTG----------------CCCGTTGTTCCTCCCC-G--TC-TGTC--T-G--TACGATAGAGGG-CTGTTACAAA-G--TGGTGGCC---ACGTT-A-GGC-CGGT-AAATTGTCTACACTTGTCTGTACGGTA-C-ATGTA--TCA-TTCG-ATTGGAGATTCCGCTAG-CTCAG-CATGGGCCTTCGTTTTCTTCTC-TCCA-CCTCTTTGAAA-C-GTAGAGGGGAGACTGTGC-------TGCCTC-AGTTG-GTACATGGAT------GT--A-TG-
gi|9 : TTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATATATT-AA--CTTG-TTACCAACCTCAAAA-TA-CATAA-TCATA-AAATG-TGGGGCCTG-AT-TGTA-GTTCTGATAA-TG-CTACATGTAGTTTC-ACACA---CACCATAACAAGCTTAG---------TGTAGAACATAGGT-CTCCATCACG-CAAGTTA-AACAA-TCTTCACCAAATGAAACTATT--GGC-AGGGTTACTGGGACAg
blockSeqs : . . C A . A A . T AG TTT TATG A A T C . TT A GA . G TGT G GT T T A C AG A T . C T ACG CTTAG . C A T . ATTT AT TC C CGTTTCCCACGT T CA A . T A T T . A . . G . AT T . . A . . T T A G C A . A CC . AT . G TTAAC A C C . . T AAT C C A C C A A T G AGGGGG G ACATAT TTTCTCT GGGGTAGT GT T T . TT CGATG GA T G GCGA A CG CTTCTG CC TG T GT C CTTG GCTGT C TT T CGC T T T T A A G TT CTT GTA T A CA AT GG C G GGC T TC CA A A T TA TA A GGG . TTGGAA TC T A C TGAAGCCTCA T A CT C AA AA C GG . GT A GT AA . A TTTTCC C CT A AA G GAGC . GT C TC AG C G TTC G GG T . ATT C AC G A . G G CGGGCCTCTTTTGTC G G G . A ACGTG ATC G TTTTGTT AATA T . A G T T T T AGT GT CC A T T GT A G T AA G A G G A C A C CA A T T TGTAT CGGA A GA
blockSeqs : . TC G A . . . . . G . . . G . G . T . . A . . . . . . GGA . C . . . T CC . . CCG . . . . . . . . . . . . . A . . T G . . . A . . C . AT . . TTAAA A C C . . T . C . A . . . . . G GGGCG G GC GG . GG . . . . TCGAT . . G GA . GG TCTGG CC TG . . . CAGT GCTG . TT T GC . . . . A T G AC TT GTA . A . AT G . . G A . A . . . . TC . AGG . . . . C . CCG . T . C A . C . . . . . TT . . TTTGC . . . A . CGG . . . . . C . . . GA . . AT C . G . . . . . . . . . . G . . TTAAA A T . A G . . . . . . CC A . . G . G . A . A G . A C . . AA . C . A . A GC
blockSeqs : A . . . . . G . . . . . . . . . . . . . A . . . . A . . C . AT . . TAA A C C . . . . C . . . . . . . . . G . C . GT . . . . TCGCT . . A GA . GG TTG GG TG . . . TTG ACA . TT C . . . . . A T C AC T GTA . A . C G . . . A . C . . . . TC . AGT . . . . . . G . A . C A . . . . . . . TT . . TTGCA . . . A . GG . . . . . . T C . . . . A T . . . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . A . . C . . . . . . . . . . C . . . . . . TCATG . . . AA . G . TG TG . . . TTG CTG . T T . . . . . A T G AC T TT . A . C G . . . T . C . . . . C . AG . . . . . . G . . . . A . . . . . . . T . . TTC . . . . . .
blockSeqs : . . . . . . . . . . . CC C . . . TG ATG . T . . . . . . . . . G . G . . . T G . . . C . . . . . . G . . . . .
blockSeqs : . . . . . TG GAT . . . . . . . . . . . T . . . . . A . . . . . .
blockSeqCons : ** ** A* C* *** A* ** GT TCGCG** GA**** CCTG*** ACG*** TT* G** C* AGG* CG******** A* ** TTC**** A* GG***
originalCons : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAA-TG-CTACATGTAGTTTCCGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATTCGATTGGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCA-TTCTGGCCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGG-CTG-TGCGAA-G-TTGGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTCATCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTC-GG-TG-GTACATGGAA------GT--A-TG-C-TCA---------GGT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCA-TTTNC-CGCATT-TGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
finalCons : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTA-GTTCTGGCAA-TG-CTACATGTAGTTTC-GCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTTA-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCA-CCCAAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGC----ATATGTTTTTT------CGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATCGCG--GGCTGATGG--C-GGACCAGGGGGAGA----T-AAAGGAATATTTGGACCATCACCTG---CCCCGTCGTTCCTCCCC-G--TC-TGTC--T-G--TACGACGGAGGACG---TGCGAA-GTT-GGTGGCC---AAGTT-A-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGTA--AAN-ATGG-ATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTC-TCCA-CCTCTTTTAAA-C-G--GAGGGGAGACTGTGTCTGGAG-TGCCTCAGG-TG-GTACATGGAA------GT--A-TG-C-TCACG--------GT-GGTACATGGAAG--TACCGGCA-C--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCATTC----CGCATT-TGGACTTCCGGC--GCCT-GTGA-AATAC-CACGGGG---C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
Alignments
lowQualScore : 222 1 1 1 1 1 2222 111 3333 1 2 11 11 2222 1 11 1 111 2 1 11 1 1 444 11111 1 1 1 333333 22 333333333333333 22 1 1 1 1 1 11 11 11 1 1 111 2222222 1 11 111 1 11 1 1 1 1 1 11 2222222 2222 2222222 3333333333 11 222222 111111 3333333333333 1111111 2222222 111 111111 111 1111 222 1 11 111111 1 55555555555 11 11 1 11 11 11 11 11 22222 111 11 11 1 11111 1 11 1 11 11 222 1 1 22 1 1 1 666666666666666666 1 22222222 111 2222222 2222 11 1 1 1 1 222 11 111 1 11 1 22 1 1 1 11 1 11111 1111
lowQualScore : 111 5 1 5 5 1 5 5 1 4444 666 0000 0 8 0 8 8 11 3 11 8 8 4444 3 88 7 7 7 3 777 6 3 88 2 3 333 44444 3 6 3 7 3 333333 11 00 6 777777777777777 7 00 7 3 2 7 1 1 5 5 5 11 8 8 0 11 8 11 0 8 0 0 8 8 6 6 8 8 8 8 8 8 8 111 0 0 1 0 0 8 0 0 8 5555555 88 5 0 11 8 3 777 2 0 33 0 0 0 0 0 22 5555555 2 6 1111 4444444 4444444444 00 8 6 6 99 0 111111 99 6 9 888888 6 888 8888888888888 33 00 5 77 5 5 2222222 4444444 5 222 0 555555 5 5 5 5 5 1 4 22 555 999 0 5 5 3333 1 88 6 6 111 1 3 99 1 5 5 5 77 88 6 22 5 999999 99 6 3 8 55555555555 8 6 11 88 11 0 0 11 8 11 8 11 0 00 11 8 88888 444 11 8 88 0 6 77777 0 33 0 88 88 6 6 333 6 66 0 0 333 2 55 2 0 0 3 6 999999999999999999 6 6 6 3 7 44444444 999 6 1111111 0000 3 33 3 2 0 0 0 3 333 88 666 7 0 3 7 44 7 6 3 00 3 7 6 3 7 6 3 6 11 3 1 7 44444 3333 9 22
lowQualScore : ... . . . . . . . . .... ... .... . . . . . .. . .. . . .... . .. . . . . ... . . .. . . ... ..... . . . . . ...... .. .. . ............... . .. . . . . . . . . . .. . . . .. . .. . . . . . . . . . . . . . . . ... . . . . . . . . . ....... .. . . .. . . ... . . .. . . . . . .. ....... . . .... ....... .......... .. . . . .. . ...... .. . . ...... . ... ............. .. .. . .. . . ....... ....... . ... . ...... . . . . . . . .. ... ... . . . .... . .. . . ... . . .. . . . . .. .. . .. . ...... .. . . . ........... . . .. .. .. . . .. . .. . .. . .. .. . ..... ... .. . .. . . ..... . .. . .. .. . . ... . .. . . ... . .. . . . . . .................. . . . . . ........ ... . ....... .... . .. . . . . . . ... .. ... . . . . .. . . . .. . . . . . . . . .. . . . ..... .... . ..
lowQualScore : 000 0 0 5 5 0 5 0 0 0000 333 0000 6 0 4 0 0 00 2 00 0 0 0000 3 77 3 3 3 3 777 7 3 33 0 3 333 77777 3 7 3 3 3 777777 77 00 7 777777777777777 3 00 3 3 0 3 0 0 0 5 5 00 0 0 8 00 0 00 8 0 8 6 0 0 0 0 0 0 0 0 0 0 0 777 8 8 0 8 8 0 8 8 0 0000000 88 0 0 00 0 2 555 5 0 22 0 0 0 0 0 55 8888888 5 5 2222 4444444 0000000000 66 0 7 7 22 8 888888 22 7 3 555555 7 222 7777777777777 44 99 7 99 7 7 6666666 3333333 7 111 7 000000 7 7 7 7 0 6 3 00 000 111 1 7 0 7777 0 77 7 7 000 4 2 22 4 7 7 7 99 33 7 55 7 222222 22 7 3 0 22222222222 0 0 00 88 00 0 8 00 0 00 0 00 8 22 00 0 00000 000 00 0 66 8 0 22222 0 88 0 33 33 7 7 333 7 88 0 0 555 5 00 5 0 0 3 7 000000000000000000 7 7 7 3 3 77777777 777 7 7777777 8888 2 88 2 5 0 0 0 3 333 33 777 3 7 3 3 00 3 7 3 77 3 3 7 3 3 7 3 7 00 3 0 3 33333 3333 8 88
consensus : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTA-GTTCTGGCAA-TG-CTACATGTAGTTT-CGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTT-A-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCACCC-AAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGCATAT----GTTTTTT------CGGGG-A--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATCGCG---GGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCAT--CTG-CCC-G-TCGTTCCTCCCC-G--TC-TGT-C--T-G--TACGACGGAGGG--C-G-TGCGAA-G-TTGGTGGC---C--AAG-TTA-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGT-A--AANAT-GGATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTC-TCCA-CCTCTTTT-AAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTCAGGTG-GTACATGGAA------GT--A-TG-C-TCA--G--------GT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCATTT--C-CGCA---TTTGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
Reference ( family-3026 ) : NGTCAAGTGTTTCAGACATNCATGTATAGCGTTTTTAATCGTNAAAATCAACTCGATTTNTACAG--TTATCG-TCTGTTTG---GCAGAAAAAGGTTA-TCTCC-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTACAGTTT-G-TTT-TTCGCATCCATTTTTATTACATCCT-AT-A-ACCAGTGGTTG-TAAAGCATCC-AACTTT--TACACCCGAG-CTCGAAT--GCTAGNTTGGTTGTT-CATACATG-TGCTTACTGT-AATACATTTCAAA-TT--CGTTTTTNCGCATT-CAGAATCCCA-CGTTTCC--CGC--TTTTTGATATGC-TATCCAATCAATAGTTT-CGTCCTTGTTTTGACCCNGANCAGTGAACAACCTATTAACTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-TTGGGCCTG-AT-TGTA-GTTCTGGCAA-TG-CTACATGTAGTTT-CGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAGTT-A-A-CAA-TCTTTACCAAATCAAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCACCC-AAA-TGCTA-AA-AT-TTCAAT-ACAAGCCT-CAACTCCCTATAC-GTGGA--GG-GGGGGCGCATAT----GTTTTTT------CGGGG-A--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCCATCGTATCGCG---GGCTGATGG--C-GGACCAGGGGGA-G--A-T-AAAGGAATATTTGGACCATCAC--CTG-CCCCG-TCGTTCCTCCCC-G--TC-TGT-C--T-G--TACGACGGAGGA--C-G-TGCGAA-G-TTGGTGGC---C--AAG-TTA-GGC-CGGT-AAATTGTCTACA--TGTCTGTACGGTA-CAATGT-A--AANAT-GGATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTC-TCCA-CCTCTTTT-AAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTCAGGTG-GTACATGGAA------GT--A-TG-C-TCAC-G--------GT-GGTACATGGAAG--TACCGGC-AC--TATTACCCAGCAGCAATCCCCCGGAA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCNTTTCCAAGTCTTT--ATG-TCATT---C-CGCA---TTTGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GG--C-ACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTATCCGGTCTA---TCCCCTGGTTCGGA-TTTGC-AATTGCGGCC-CATGA-CATC-CACTCTCCCA-ATTAGAC-CGG--C--TCTTTTGT-ACAAGTGCGTGGCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAAT-CTGGACATGTTTAG-TGTGGAACGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--AAAT-C-TGGACGTGTTTTGTTCTGG-AACGTGTACAGTATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCGAAC-TATCTGGANATATGTA-ATGCGG-TCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAA
gi|1 : GTCAAGTGTTTCAGACATGC-TGTATAGCGTTTTTAATCGTTAAA-TCAACTCGATTTATACAGATTTATCG-T-TGATTG----CAGAAAA--GCTA-TCTCC-GTCAATCAATGAGGTG--T--CGCTTGCCTC--AACACACCAAACTG-TCTACAGTTTTG-TTT-TTC-CATCCATTTT-ATTACATCCT-ATTA-ACTCGTGGTTGCTAAAGCATCC-AACTTTATTACATCCGAG-CTCGAATCAGTTGGATTG-TTGTTTCATA-ATG-TGCTTACTGTGAATACATTTCAAA-TTAACGATTTTTTGCATT-CAGAATTCCAACGTTTTCACCGC--TTTTTGATATGC-TATCCAATCAATAGTTTTCGCCTTTTTTTTGATCCAGAGCAGTGAACA-CCTATTAACTTGGTTACAACGCACGT-CTACTCCGATTAGGATATAT--T-AAAGCTTGGTTAC-AACCTCATAGATAATATAAATCA-A-AAATG-TTGGGCCTG-AT-TGTAAGTTCTGGCAAGTG-CTACATGTAGTTTTCG-ACAAAGCGCCATAACAAGCTTAAGAGGCCCAGTGT-GAGCATAGGTACTCCATCACG-CAAGTT-GTA-TAAATCTTTACAAAGTCAAA-TATTTGGGCTAGGGTAGCTGGGGAAATGTTAAT---C-ACCC-AAAATGCTA-AA-AT-TTCAAT-ACTAGCGT-CAACTCCCTATACTGTGGA--GG-TGGG-CGCATAT----GTTTTTT------TGGGG-A--------TT-TGTTACTCGG-GTCAT-GGGCG--AGTCCATCATATT-CGATTGGCTGATGG--C-GGACCAGGAGGATG--ACT-AAAGGAATATTTGGACCATCATT-CTGGCTCCG-TCGTTCCTCCCC-G--TC-TGT-C--T-G--TACGATGGAGGGGCT-G-TGCAAA-GATTGGTGGC---C--AAG-TTA-GGC-CGGT-AAATTGTCTACA--TGTCTGCACGGTA-CAATGT-A--AAGAT-GTATTGGAGATT-CGCTAGCCTCAG-CACGG--CTTGGTTT--CTCTTATCCA-GCTCTTTT-AAAC-G--GAGGGGAGACTGTGTCTGGAG-TGTCTCA-GTGTGTACATGGAA------GT--A-TG-C-TCA-----------GT-GGTACATGGAAG--TA-CGGC--C--TATTA-CCAGCAGCAATCCCCCGGAG--GAATAGGGAACA--TC-AG--ATGGGTCCAAA--CAATTCCAAGTCCTTAAATG-TCATG---CACACA---TTTAGACTTCCGGC--GCCT-GTG---ATACACACGG-GG--CGACCGG--TTG-CGTTTTTACATA--TTAT--GTCGGTAT-CGGTCTA---TCTCCTGGTTCAGA-TTTGCTAATTGCGG---CATGA-CATCGCTCTCTCCCA-ATTAGACTCGG--CGGTCTTTTGTGACATGTGCGTGGCATTGGTTGTGTAACTGATATTAAAACGTGCAACAGTGTTGTAAAT-CTGGACATG--TAG-TGTGGACAGTGCAC----GTG-GTTGAAATCCTGGACA-TGTTTTGTT-G-TGGAACG-TGCAC---AGTGT--TAAT-C-TGG-CGTGTTTTGTTCTGG-AACGTGTACA-TATGTAAATCT-GGACATGTTTTGTTATGTTAC-TTGCAGCAT---AATATCA-AT-AATGGT-T-GCACT-TATACATCTTGTAATTAGTATGCAAG-AGG-AACCTACGCG-AC-TATCTGGGAATATATA-ATGCGG-TCGTATTCATTTAAGTAGCTATTTAGTGTTTGTTAAATTAA
gi|10 : gGATCG--C-GACCCAGGTGGA-GCGA-T-AAAG--ATAATTCGACCATCACTTCTG-CCC-G-TTGTTTTTCCCCTG--TCCTGT-CCTT-G--TACGACGGAGGA--C-A-TGTGAA-G-TTG--GGCCCGC--AAGTTTA-GTC-GGGT-AAAATGTCTTTG---GTTTG--CGA-A-C--TGTAA--AATATGGGATTGGAGA
gi|11 : cctcgtcacattgccgtgttgaTG-GTACATGGAATTGGAAGT--A-TG-CCTCA--G--------GT-GGTACATGGAAG--TAC-GGC-AC--TATTACCCAGCAGCAA-ATCCCGGAA--AAACTGGG-ACAGTTCAAG--ATGGGTCCTAAACC-TTTCCAAGTCTTT--ATG-TCATTTG-C-CGCA---TTTGGACTTCCGGC--GCCTAGTGAAAATGC-CACGG-GG--
gi|12 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATAT--T-AA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCATA-AAATG-CTGGGCCTG-AT-TGTA-GTTCTGGCAA-CG-CTACATGTAGTTT-CGCACA---CACCATAACA
gi|13 : TACAG--TTATCGTTTTGTATT---GCAGAAAAAAGTTA-TC-CC-GCAGATCAA-GAGATGGTT--CACTTGCCTC--AACACAC-AAACTG-TC
gi|14 : AGAAGGTTAATCTCCCGTATATTGA-GAGGTGGTTTTCGTTGGCCTCGAAACATAC-AGACTG-TCTAC
gi|15 : aaagTTT--CTTTA-TCCA-CCTCTTTT-AAAC-G--G---GGAGACTGTGTATGGAG-TGCCTTGGGTG-TTAC
gi|16 : t-TCGTATACATTTAAGTGGATATCTAGTGTTTGTTAGATTAA
gi|17 : CGTGCAC---AGTGTGT--AAATCCTGGACA-TGTTTAGTT-G-TGtatg
gi|18 : C-TCCA-CCTCTTTT-AAAC-G--GAGGGGAGACTG
gi|2 : GTTAAGTAT---AGA-ATCCATGTAT-GCGTTTTTAATCGTAAAAATCAACT-GATTTTTAC-----TATCA-TCGGTTTGTATGCAGAAAA-GGTTA-TC--C-GCAGATCAA-GA--TGGTT--C--TTGCCTC--AA---AC-AAACTGGTCTACAGTT--G-TTTGTTCGTATCCATTTTTATCAC---CT-AT-A-ACCACTGGTTG-TAAAGCATCCTAACTTT--TACACCCGAGTCTCGAAT---CTAGCTTAGTTGTT-CATACATGATGCTTAC-GT-AATACATTTCAAAATT--TGTTTTTATGCATTTCAGAATCC-A-CGTTTCC--CACGTTTTTTGA-ATA---ATCCA-TCAATAGTTT-CGTTCTTGTTTTG-CCCTGATCA-TGAACAACTTAT-AACTTG-TTACAAC--ACGTGCTACTCC-ATTAAT-TATAT--T-AA--CT-G-T-ACCAACCTCAAAA-TA-CATAA-TCATATAAATGATTGGGCCTG-AT-T-TA-GTTCTGGACA-TGACTACATGTATTTC-CGCACA---CACC-TAACA--CTTAGATTGCACAGT--AGAGC-TAGGT-T--CATCACGGCAAGT--A-A-CA---CTTTAC-AAATCAAA-TATT--G-C-AGAGGTACTG--ACAA-GTTAATAATCCACCC-AA--TGCTA-AA-ACATTCAAT-ACAAGCCTTCAACTCCTCATAC--TGA-------GGGGC-----T----ATTGTTT------CTGGA-G--------TT---TTACTCGATGTCAT-G--CG--AGTCCATCATACGATG---GGCTGATT---C-GAACCAGGGGAA------T-AAAGGAATATT-GGACCATCAT---TG-CC--G-TC--TCCTCCCC-G--TC-TGT-C--C-AGTTAC-ATGGAGGC--T-G-TGCAAACG---GGTGGC---C--AAG-TTATAGC-CGGTTAAATT-TCTACA--TGTCTGTACGGTA-CATT------AACAT-GGATGGGA---C-CGCTAGCCTCAG-CACG---CTTA---T--CTCTCATCCAACCTCTTTT-TAAC-G--GAGGA---ACGGTG---GAAG-TGC-TC------GTACTTG--A------GCTCA-TG-C-TCAT-GAAGCCTCAGT-G-TACATGGTAG--TACCGGC-AC--TATTACC-AGCAGCAATGCCCCCAAAGGAAGTAGGG-ACA--TC-AGGTATGGGTCCAAAAACAATTCCAA-TCCTA--ATG-TCATT---G-CACACATTCTTGACTTC-GGCCTGGCT-GCG-AA-TACGCACCG-----C-ACCGT--TTC-CCTTTATAAATA--TTAT--GTCGGTATCCG-TCTA---TCCCCT--TTC--A-ATTGC-AATTGCGGCC--ATGA-CATC-CACTCTCCCAGATTA-AC-CGGGCC--TCTTTTGTCACAA--GCGT-GCATTGGTTGTG-AACTGATGTTAAAACGTGC-AC-GTG-TGTAAATCCTGGACATGTTTTGTTGTGGAACGTGCACAATAGTGTGG--TAATCCT-GACATTGTTTTGTT-GTTGGAAAGTTGCACAGTAGTGT--AAATCC-TGGACATGTTTTGTTCTGGTAACGTG-ACAGTATGT-AATCTGGGACATGTTTTGTTATGTTTCTTTGCAGCATAAAAATATCAGATAAATGGTGTGGCACTATATACATCTGTTAATTATTATGCAAGCAGGAAACCTA-GCCAATACATCTGGATA-A---A-ATG--------AT-------AGTA-TTATCTAGTGTTTGTTAAA
gi|3 : AGAAAAAGGTTA-TC-CA-GCAGATCGA-GAGGTGGTT--CGCTTGCCTC--AACACAC-AAACTG-TCTTCAGTTT-GTTTT-TTCG-ATCCA-TTTTATTACATCCTCAT-AGATCAGTGGTTGATAAGGCATCA-AGCTTT--TACA-CTGAG-CTCGAATACGCTAGG--GATTGTT-CATACATG-TTCTTGCTGT-AATACATTTCAAA-T----GTTTTCCCACATT------TCCCA-------C--CG---TTTCTAATATGCATATCTAATCAATAGTTT-CGT-CTTGTTTTGA
gi|3 : caaaCA---CACCATTACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATCACG-CAAG-------CAA-TGTTCACCAAATCAAACTATT--GGC-AGAGTTACTGGGACAATGTTAAT---CCACCCCAAA-TGCTA-AACAT-TTCAAT-ATAAGCCT-CAATTCCCTATAC-GTGGG--GGCGGGGGCACATATATATGTTTTTT------GGGGGGA--------TTGTGTTACTCGG-GTCAT-GG-CG--AGTCTATTGTATCGAT---GGCTGATGG--C-GGACCA-GGGGA-G--A-T-AAAGGAATATT------------------------------TCCCC-G--TC-TGTCC--T-G--TACGATGGAGGG--CTG-TGCAAA-G-TTGGTGGC---C--AAA-TTA-GGC-CGGT-AAATTGTCTACAT-TGTCTGTACGGCA-CAATGT-A--AACAT-AGATTGGAGATT-CGCTAGCCTCAG-CACGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacaccattacaagcttagatggcccagtgtagagcataggtctccatcacgcaagcaatgttcaccaaatcaaactattggcagagttactgggacaatgttaatccaccccaaatgctaaacatttcaatataagcctcaattccctatacgtgggggcgggggcacatatatatgttttttggggggattgtgttactcgggtcatggcgagtctattgtatcgatggctgatggcggaccaggggagataaaggaatatttccccgtctgtcctgtacgatggagggctgtgcaaagttggtggccaaattaggccggtaaattgtctacattgtctgtacggcacaatgtaaacatagattggagattcgctagcctcagcacg
gi|4 : caaaagaaaaaggttatccagcagatcgagaggtggttcgcttgcctcaacacacaaactgtcttcagtttgttttttcgatccattttattacatcctcatagatcagtggttgataaggcatcaagcttttacactgagctcgaatacgctagggattgttcatacatgttcttgctgtaatacatttcaaatgttttcccacatttcccaccgtttctaatatgcatatctaatcaatagtttcgtcttgttttgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTT------CGGGG-GGGGGTAGTTCGGGTTA----G-GTCATTGG-CGTTAGTCCA-CGTATCGCT---GGCTGTTGG--CTGGACCCAGGGGA-G--A-T-AAAGGAAGATTTGGACCATCAT--CTG-GCCGGGTTGTTTTTCCCT-GGTTC-TGT-C--TTG--TACGACGGAGGA--T-G-TGTGAA-G-T----GGC---CGCAAG-CTA-GGTTCGGT-A---TCTTTG-----GTCT---TGGTATCAAAGT-ACAAATAT-GGATTGGAGATT-CGCTAGCATCAGGCACG---CTAGGTTT--C-CTC-TCCA-CCTTCTTT-AAACTG--GAGGGGAGACTGTGTCTGGAGATGCCTCAGGTG-GTACATGGAA------GT--A-TGAC-TCACCG--------GTTGGTACATGGAAGCTTACCGGC-ACAATATTACC-AGCAGCAATCCCC--GGA--AAACAGGG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATG-TCATT---C-CGCA---TTTGGACTTCCGGC--GCCT-GTG-AAATAC-CACGG-GAGCC-ACCGG--TTGCCGTTTTTACATGTCTTATAGGTTGGTATCCGGCTTATTCTCCCCTGGTTCGGATTTTGC-A--TGTGGCCACAT---CCTC-CATTTTC
gi|5 : cccaatcctaatccagtttaattttaactcgC--TTG-CCTGT-TTGTTTTCCCCT-G--CC-TGT-C--TTG--TACGACGGAGGG--A-T-TGTGAA-G-TTGGCCGC------AAG-CTA-GGT-CGGT-A---------TA--TGTCTTT--GGTA-CAATGTAA--AATAT--GATTGGAGATT-CGCTAGCCTCAG-CACGG--CTAGG-TT--CTCTC-TCCA-CCTCTTTTAAAAC-G--GAGGGGAGACTGTGTCTGGAG-TGCCTCA-GTG-GTACATGGAA------GT--ATTGCC-TCA--G--------GT-GGTACATGG-AG--TACCGGCAAC--TATTACCCAGCA-CAATCCCCCGGAA--AAACA-GG-ACA--TC-AG--ATGGGTCCAAAACCTTTTCCAAGTCTTT--ATGATCATTTTCC-CGCA---TTTGGACTTCCGGC--GCCT-GTG--AATAC-CACGGCGG--C-ACCGGGTTTG-C
gi|6 : catGAA-TTTGC-AAT-GCGGCC--ATGAACATC-CACTCTCCCA-ATTAGAC--------------------AAGTGCGTGGCATT--------------TGTT---------------G-TGTAA---CTG---ATGTTAAA------AACGTGCAC---AGTGTGT--AA-TCCTGGACA-TGTTTTGTTTG-TGGAACG-TGCAC---AGTGTGTAAAT-CCTGGACATGTTTTGTTCTGG-AACGTGTACAG-ATGTAAATCTGGGACATGTTTTGTTATGTTAC-TTGCAGCAT-AAAATATCA-ATAAATGGTGT-GCACTATATACATCTTTTAATTATTATGCAAGCAGG-AACCTACGCAAAC-TATCTGGACATATGTATATGCGGATCGTATACATTTAAGTAGCTATCTAGTGTTTGTTAAATTAccg
gi|7 : CTTGGTTACAAC--ACGT-CTACTCC-ATTAATATATAT--TTAA--CTTG-TTACCAACCTCAAAAATA-CATAA-TCAAAGAAATG-TTGGGCCTGGATCTGTA-GTT-TGGCAA-TG-CTACATGTAGTTT-CGCACA---CACCATAACAAGCTTAGATGGCCCAGTGTAGAGCATAGGT-CTCCATC-CG-CAAGTT-A-ACCAA-TCTTTACCAAATCCAACTATT--GGC-AGGGTTACTGGGACAATGTTAAT---CCACCC-AAA-TGCTACAC-AT-TTCAATAACAAGCCT-CAACTCCCTATAC-GTGGAGGGG-GGGGGCGCATAT----GTTTTTTTTTCTCTGGGG-A--------TTGTGTTACTCGG-GTCAT-GG-CG--AGT
gi|8 : TCAT-GG-CG--AGTCCATCGTATCATG---TGCTGATGGGAC-GGACCA-GGGGA-A--A-TAAAAGGAATATTTG----------------CCCG-TTGTTCCTCCCC-G--TC-TGT-C--T-G--TACGATAGAGGG--CTGTTACAAA-G--TGGTGGC---C--ACG-TTA-GGC-CGGT-AAATTGTCTACACTTGTCTGTACGGTA-C-ATGT-A--TCATT-CGATTGGAGATTCCGCTAG-CTCAG-CATGGGCCTTCGTTTTCTTCTC-TCCA-CCTCTTTG-AAAC-GTAGAGGGGAGACTGTGC-------TGCCTCAGTTG-GTACATGGAT------GT--A-TG-
gi|9 : TTGGTTACAAC--ACGT-CTACTCC-ATTAAGATATATATT-AA--CTTG-TTACCAACCTCAAAA-TA-CATAA-TCATA-AAATG-TGGGGCCTG-AT-TGTA-GTTCTGATAA-TG-CTACATGTAGTTT-CACACA---CACCATAACAAGCTT---------AGTGTAGAACATAGGT-CTCCATCACG-CAAGTTAA-A-CAA-TCTTCACCAAATGAAACTATT--GGC-AGGGTTACTGGGACAg