lowQualScore : 111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222 888888 4 222 11 22 99999999999999999 4444444444 1 777777777777777777777777777777777777777777777777777777 33333 3 44444 2222222 1 8888888888888888 1 2222 666666666666 1 1111 3333333333333333333333333333333333333 11111 1 11 11 1 22222 1 4444444444444444444444444444444444444444444444444 22222 1 111 1111 111 111 11111 11 11 2222222222 66666666666666666666 999999999999999999999999999999999999999999999
lowQualScore : 7 6 6 7 22 6 111 222222 6 0 6 999 22 6 77 55555555555555555 2 4444444444 3 7 1 777777777777777777777777777777777777777777777777777777 44444 0 44444 9 4444444 5 6666666666666666 0 2 5555 8 9 444444444444 99 1 6 5555 4444444444444444444444444444444444444 4 8 0 88888 4 0 8 33 00 77 0 8 8 8 00000 6 2 1111111111111111111111111111111111111111111111111 0 44444 5 5 1 777 5 0000 555 2 000 11111 4 4 0 9 77 44 00 8888888888 44 8 99999999999999999999 0 4 444444444444444444444444444444444444444444444 66 5 0 5 5
lowQualScore : . . . . .. . ... ...... . . . ... .. . .. ................. . .......... . . . ...................................................... ..... . ..... . ....... . ................ . . .... . . ............ .. . . .... ..................................... . . . ..... . . . .. .. .. . . . . ..... . . ................................................. . ..... . . . ... . .... ... . ... ..... . . . . .. .. .. .......... .. . .................... . . ............................................. .. . . . .
lowQualScore : 0 0 0 0 00 0 000 000000 0 0 0 000 00 0 55 55555555555555555 5 5555555555 3 3 0 333333333333333333333333333333333333333333333333333333 33333 0 22222 0 2222222 5 8888888888888888 0 0 8888 0 0 666666666666 22 0 2 7777 6666666666666666666666666666666666666 8 0 8 66666 6 0 8 88 22 00 0 8 0 2 77777 7 7 2222222222222222222222222222222222222222222222222 7 22222 7 7 7 666 6 7777 777 9 444 99999 4 4 7 0 11 00 66 6666666666 66 9 00000000000000000000 1 4 888888888888888888888888888888888888888888888 99 7 6 7 7
consensus : NNTAAAAGTGATTACTAAGTCTACTGATGATAAAGTCAAATTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCAATGTAATGACAGTTGAGTGTCTCAAACACTGNNNTCTGGCGCCGCCACAAAACACTTGCTAGAGTAGTCNGATGCTGCNACTAAC-ACTGATAGCCCG--G---TT--GCC-A-CC-G--T------CCTCCAA-ANAA--------CCATAATT--TG-ATCGCAAAACAGCATN--AATAACATCATTTNA-A-TGTGATAGAACGTTTC-TTT---CTTT-ACGTT-TATCTA--TAAAGATA-TGTTATNTA---TATTT-AAATC--TTCTTGTATN---AGCTGAAATTGT---T-AAA---------ATAT--------------GGTCCG-TATTTTGGTCCGATTTGGT-AGTTT--TGTG-GGGGCGA-TTTTAAAGAT-AATTGAAAA---NATC-AAGCAACTGCAT-----------G-------------AT--ATAG---AA-----------ACGTCT--TTAAAATT-CCG-TAACGTAAA--GCTTTTNT---GAAAAAGT--ATTNAAG--TATAACGCCAAAGA-AG-AAAATTTGTG-AGACACNTA--CCT---TA----TCGATTTC-CT-A-C-AT------ACCA-ACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAA---ACGC----GG--------------------AAAANAACAC-GGAAAG-TCC-GTCCCCA
Reference ( gi|2 ) : TTTAAAAGTGATTACTTAGTCTACTAATAATAAAGTCAAAATTTCAATTGAATAGTAAT---GTACCCA-ATTAAAACAATGACAGTTAGGTGTCTCAAACACTGATATTTGGT--TACCATTAA-CAC--A------TAGTCCGGTGT--CAATTAAC-ACTGATAGTC----G---T---GCC-A-CC-G--T------CCTTCAA-AAAA--------CC-TAATT-ATG-ATCGCAAA-CAGC-TT--AATAACATAATATCA-A-TGTGATATAACGTTTC-TCT--TTTTTCATATT-TGTCTA--GAAAGATA-TATTATATA---TACAGTAAATC--TTCTAGTATA---AGCTGAAATT-------------------ATAT--------------GATCCG-TATTTTCGTTTGGTTTGGT-ACTTT--TGTG-GGGATGA-TTGTAAAAAT-AATTGACAA---TGTC-AAGCTACTGTAT-----------G-------------AT--ATAG---AT-----------ACGTCT--TACAAATT-CCG-TATCGTAAA--CCTTTTAT---GAAAAAGA--ATTCAAA--TATAACGCTGAAAA-AG-AAGACTTGTA-AGACAACTA--CCA---TC----TCGATTTC-CT-A-C-A-------ACCAAACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAA---ACGC----TG--------------------AAAATAACAC-GGAAAG-TCC-GTCCCCA
gi|11 : TAAAAGTGATTACTAAGTCTACTGATGATAAAGTCAAATTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCAATGTAATGACAGTTGAGTGTCTCAAACACTG
gi|3 : cttaatattttttttaaagacagacatagaaaaaatgctaacatgtataatacTCTGGC--TGCCACAAAACACTTG------TAGTCCG-TGTTGCCACTAACCACTGATAGCCTGGTG---TTCTGCC-A-CC-AAAT------TTTCCAA-AAAAAAAAATAACCATAATT-TAG-ATCGCAAAACAGCATG--AATAACATCAT-TCAGA-TGTATTAGAACGTTTC-TTT--GTTTT-AC-TT-TATCT---TAAAGATAATGTTATTTA---TTTTG-AAATC--TTCTTGTATT---AGCTGGAATT-------------------GT-----------------------TATT---------TTTGGT-AGTTT--TGTGTGGGGCGT-TTTTAAAGAT-AATTGAAAA---GATCAAAGCAACTGCAT-----------GTAGGAAATGTTTAAT--GCAA---AA-----------ACATCT--TTAAAATTCCCGTTAACGTAAA--GCTTTT
gi|1 : gggaaagtgggggaggggactgccccccagcttcctaccatcgcccatgtttacgttatatttatatctaaatagttatacgtaataagcctacttaatattgttttagaggggacaggcttagaaaattgcttatgtataaagtgattaaaaagtctattgatataattgtttagtggccaaatcaatataatgtagtccggatttagttTGGTGCCACCA--AA-CAC--ACTAGAGTAGTCGGATGC--CA-CTAAC-ACTG-TAGCC----AGGCT---GCC-AGCC-A--TAATATTCCCCCAA-ATA---------TA-TAATTCATG-TTCAGAAA-CAGC-ATGGAATAACATCATTTAA-AATGTGATCACACGTTTC-TTTGGTCTTTTACATTGTATCTAATGAAAGATA-TGTTAT-TC---TATTTGAAATTCTTTTTAGCATT---AACTGGAATTGTTACTTAAAAGCAAATTCATAT--------------GGTCCGATATTTTGGTCCGATTTGGTGAGTTT--TGTG-TGGGTGAATTTTAAAAGTTAATTGATAAACAGATC-AAGCAACTGCAT-----------GTAGAATT------ATTAATGGCAAAA-----------ACATCT--T-TAAAAT-CCG-TAACGTAAAAGTTTTTTTT---TAAAAAGT--ATTGAAGATTATAACGCCAAAAAGAA-AAAATTTGGAGAGAC-ATTA--CC----TCGTTATTGATTTG-CTAA-T-AT------ACC--ACGAAAAAATCC-TTGCCTGAGC---------------------------G--------------------AAAAAAACACAGGATAG-TCCTGTCCCCAtt
gi|10 : gggagaggggggggcgactggcctctcccggctcctatacggcaccatgtttaacgttatatcatcttatagtaagtgttgtacacttaacgctttacttaactattgtttttaaagacagcttagcaaaaatttgccttaaattgtacttaaaagtgattaaagatctagttgatattaaattgtttaagtggccaaatcacattgactacagtagtttgtattagcc-ACTGATAGTCCG--G---TT--GCCTA-CCAG--T------CCT-CAATACAA--------CCATAGTT--TACATCGCAAAACAGCATT--AATAACAAAATTGCA-A-TGTGATAGAACGTTTCATC------TTAACGTT-TGTCTA--TAAAGATA-TAT--TACA---CACTTTAAATC--TTCT-GTATA---AGCTGAAATttccac
gi|12 : -ATCGCAAAACAGCATG--AATAACATCGTTTGA-A-TGTGATAGAACGTTT-----------------T-TATCTA--TAAAGATA-TGTAATTTA---TTTG--AAATC--TTCTTGCATT---AGCTGAAATTGTATTTAAAACAA------ATAT--------------GGTCCG-TATTTTGGTCCGATTTGa
gi|5 : tAGATA-TATCATATACTTTA----AAATC--TT---GTGTA---AGCTGAAATT-------------------ATATTCTAAAACAAATATGATCCG-TATTTCCGTCAGGTTTGTT-ACTTT--TGTT-AGGATGA-TTGTAAAAAT-AATTGACGA---TATC-AAGCTACTGTATCTACAAAAGTTA-------------AT--TCAT---AA-----------ACGTCT--TAAGAATT-CCA-TAAGATAAA--ACTTTTAT---GAAAAAGA--ATTCAAG--TATAACGCTTGGTA-AG-AAGATTTGTA-AGACGCCTA--CCT---TC----TCGATTTC-CT-A-C-A----------------------CCGTTG-CTGAGCACGCTTAGTCTGGAA---ATGC----GG--------------------AAAATTGCAC-GGAAAG-TCT-GTCCCC
gi|4 : AAATC--TTCTTGTATATAAAGC---AA---------------------ATAT--------------GGTCCG-TGTTTTGGTCCGATTTGGC-AGTTTGTTGTG-GG--CGA-CTTTAAAGAT-AATTGAAAA---TATA-AAGCAACTGTAT-------------------------AT--ATAG---ATGATAACGAAAAACATCT--TTAAAATT-TCG-TACCGTAAA--GCTTTTCTTTTGAAAAAAAGTATCCAGG--TATAACGCCAAGGA-AG-AAAATTTGTG-AGACACTTA--TCT---TA----TCGATACC-CT-A-CTAT------ACCA--CG-AAAAGTCAGTTG-CTGAGCACGCCTAGTCTGGAA---ACGCGTAATG--------------------AA---AACAC-GGAAAG-TCC-ATCCACAcattccgc
gi|16 : atgttatttacttgAAGAT-AATTGAAAA---GATC-AAGCAACTGCAT-----------G-------------Atttcaca
gi|7 : A---TATC-AAGCAACTGTAT-----------------------------ATAA---AA-----------ATGT-TAATGCAAAAA-CGG-CTTTAAAAA--C----TAT---GAAAACGT--ATTCAAG--TATTACGCTTAGTA-AG-AAGATTTGTG-AGATATCCA--CCC---TC----TTTATCTC-CT-A-C-A-------ACTACA----------CGTTG-CTGAGCACG-----------A---ACGC----GA--------------------AAAATAACAC-GGGAAG-TCC-GTCCCCAagaaatattaatgcaa
gi|8 : gatagatc-----------ACATCT--TTAAAATT-CCG-TAACGGAAA--GCTTTTTT---TAAAAAGT--ATTGAAA--TATAACGCCAAAGA-AG-AAAAATTGTG-AGACATATA--CCT---TA----TTGATTTG-CTAA-T-AT------ACCAG--G-AAAAGTCCGTCG-CTGAGCA------------AA---A-----------------------------AAA--AACAT-GGAGAG-TCC-GTCCCCAttccg
gi|6 : tgcaaaa-CCG-TAACGTAAA--GCTTTTTT---TAAAAAGT--ATTTAAG--TATAACGTCAAAGA-AG-AAAATTTGTG-AGACACTTA--TCT---TA----TCAATTCC-CT-A-CTACATGTATACC--ACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAA---ACACG---CGCAAAAAAAAACCAAAAAAAAAAAAAAACAC-GGATAGATCC-GTCCCCttccaca
gi|13 : AA--ACTTTTAT---GAAAACCT--ATTCAAG--TATTACGCTTA-----GTAAGATTTGTG-AGACACCCAT-CCACCCTC----TCTATTTC-CT-A-C-A-------ACTA----------TACGTTG-CTGAGCACG-----------A---ACGC----GA--------------------AAAATTACAC-GGAAAT-TCC-GTCCCCA
gi|14 : --ATTGAAG--TATAACGCCAAAGA-AG-AAAAATTGTG-AGACAAATATACCT---TA----TCGATTTTGCT-AAC-T-------ATTACACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAAAACACGC----AA--------------------AAAAAAAttccgca
gi|15 : gt--ATTGAAG--TATAACGCCAAAGA-AG-AAAAAT-GTG-AGACATATA--CCT---TA----TCGACTTG-CT-AAT-AC------ACCA--CG-AAAAGTCCGTCG-CTGAG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): CTTTATATTATATTTATTATCCAATAATACACGTAATACTTAATATTTTTTAAAGACAGGCTTGGAAAAATTGCTAAATGTATAAAAGTGACTAAAAAGTATATTGATATCAATTGTTTAGTGGCAAAATCAATGATACATGTAGTCTGGTGTCACAAACACTA
Alignments
lowQualScore : 1111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 11 99999999999999999999999999999 11 1 222 111 33333 11 888888888 1 333 1 1 22222 111 44444444444 333333333 222222 4444444444444444 1111 2 0000000000000000000000000000 11 000000000000000000000000000000000000000000000000 111111 111111 333333333333333333333 5555555555555555555555555555555555555555
lowQualScore : 66 8 1 3 77 44444444444444444444444444444 5 9 8 44 8 0 111 1 0 666 22222 99 7 000000000 1 2 111 1 0 3 2 44444 111 11111111111 1 999999999 3 666666 0 0 99 1 8 4444444444444444 8 2222 5 6 2 5 1 77 5 1 2222222222222222222222222222 6 2 1 8 11 8 0 6 99 5 1 5 111111111111111111111111111111111111111111111111 1 66 5 0 66 222222 1 222222 1 55 0 0 4 0 99999 8888 777 0 4 8 888888888888888888888 0 4 0000000000000000000000000000000000000000 4 1 5 5 5
lowQualScore : .. . . . .. ............................. . . . .. . . ... . . ... ..... .. . ......... . . ... . . . . ..... ... ........... . ......... . ...... . . .. . . ................ . .... . . . . . .. . . ............................ . . . . .. . . . .. . . . ................................................ . .. . . .. ...... . ...... . .. . . . . ..... .... ... . . . ..................... . . ........................................ . . . . .
lowQualScore : 22 0 4 2 22 66666666666666666666666666666 0 6 0 44 0 6 888 0 8 000 00000 77 3 777777777 0 3 000 0 0 2 8 55555 000 55555555555 0 555555555 2 888888 8 8 00 0 0 0000000000000000 0 6666 7 6 7 7 3 99 7 0 3333333333333333333333333333 7 5 0 0 22 0 6 7 22 7 0 7 999999999999999999999999999999999999999999999999 9 44 0 1 11 888888 0 555555 0 55 3 7 0 3 44444 5555 000 6 0 0 555555555555555555555 7 0 7777777777777777777777777777777777777777 4 0 0 0 0
consensus : NNTAAAAGTGATTANNAAG-TCTACTGATGATAAAGTCAAATTT--AGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-GGTGTCTCAAACACTGGT-TCTGGT--TACCAC-AAACAC--G-----GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-A-CC-G--T------CCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCATG-AATAACATCATTTNAA-TGTGATAGAACGTTTCTTTG---TTTT--ACGTT-TATCTA-T-AAAGAT-ATGTTATNTAC-T-TTAAA--TCTTCTT-GTATNAGCTGAAATTGT----TA----------AA---A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCGA-TTTTAAA-GATAATTGA--AA-ATATC-AAGCAACTGCAT-----------G-------------AT--ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
Reference ( family-3001 ) : NNTAAAAGTGATTACTAAG-TCTACTGATGATAAAGTCAAATTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCA-ATG-TA-ATGACAGTTGAGTGTCTCAAACACTGNNNTCTGGCGCCGCCACAAAACACTTGCTAGAGTAGTCNGATGCTGCNACTAAC-ACTGATAGCCCGGT----TGCC-A-CC-G--T------CCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCATN-AATAACATCATTTNAA-TGTGATAGAACGTTTCTTT----CTTT--ACGTT-TATCTA-T-AAAGAT-ATGTTATNTATAT-TTAAA--TCTTCTT-GTATNAGCTGAAATTGT----TA----------AA---A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-GGGGCGA-TTTTAAA-GATAATTGA--AA-ANATC-AAGCAACTGCAT-----------G-------------AT--ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTNAAG--TATAACGCCAAAGA-AGAAAATTTGTGAGACA--C-NTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
gi|1 : TAAAAGTGATTA--AAGATCTAGT--TGATA---TTAAATT----GTTTA----------AGTGGCCAAATCACAT--TG-ACTACAGT--AGTTTGT-----ATTAGC--CTGGTGCCACCA---AACAC--ACTAGAGTAGTCGGATGC---CACTAAC-ACTG-TAGCCAGGC----TGCC-AGCC-A--TAATATTCCCCCAAATA----------TATAATTCAT-G-TTCA-GAAACAGCATGGAATAACATCATTTAAAATGTGATCACACGTTTCTTTGGTCTTTT--ACATTGTATCTAATGAAAGAT-ATGTTAT-TCTAT-TTGAAATTCTTTTTAGCATTAACTGGAATTGT----TACTTAAAAGCAAATTCA----TATGGTCCGATATTTTGGTCCGATTTGGTGAGTTTTGTG-TGGGTGAATTTTAAAAGTTAATTGATAAACAGATC-AAGCAACTGCAT-----------GTAGAATT------ATTAATGGCAAA-----------AACATCTTTAAAAT--CCG-TAACGTAAAAGTTTTT------TTT-----TAAAAAGTATTGAAGATTATAACGCCAAAAAGAAAAAATTTG-GAGAGA--CATTA----CCTCGTTATTGATTTG-CTAAT-------ATAC-C--A-CGAAAAAATCC-TTGCCTGAGC------------------------------------------GAA-AAAAACACAGGATAG-TCCTGTCCCCA
gi|10 : gggagaggggggggcgactggcctctcccggctcctatacggcaccatgtttaacgttatatcatcttatagtaagtgttgtacacttaacgctttacttaactattgtttttaaagacagcttagcaaaaatttgccttaaattgtact-ACTGATAGTCCGGT----TGCCTA-CCAG--T------CCTCAATACAA--------CCATAGTT--T-ACATCGCAAAACAGCATT-AATAACAAAATTGCAA-TGTGATAGAACGTTTC-AT----CTTA--ACGTT-TGTCTA-T-AAAGAT-ATATTACACAC-T-TTAAA--TCTTC-T-GTATAAGCTGAAATttccac
gi|11 : TAAAAGTGATTACTAAG-TCTACTGATGATAAAGTCAAATTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCA-ATG-TA-ATGACAGTTGAGTGTCTCAAACACTGa
gi|12 : cttaatattttttttaaagacagacatagaaaaaatgctaacatgtataatac-ATCGCAAAACAGCATG-AATAACATCGTTTGAA-TGTGATAGAACGTTT------------------T-TATCTA-T-AAAGAT-ATGTAATTTAT-T-TGAAA--TCTTCTT-GCATTAGCTGAAATTGTATT-TA----------AA---ACAAATATGGTCCG-TATTTTGGTCCGATTTG
gi|13 : tAAA--CTTT------TAT-----GAAAACCTATTCAAG--TATTACGCTTAGTA-AGA---TTTGTGAGACA--C-CCATCCACC---CTCTCTATTTC-CT-AC-------A-AC-TA-----------TACGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATTACAC-GGAAAT-TCC-GTCCCCA
gi|14 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAATTGTGAGACAAAT-ATA----CC---TTATCGATTTTGCT-AA-------CTAT-TACA-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAAAACACG---------------------CAA-AAAAAttccgca
gi|15 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAAT-GTGAGACA--T-ATA----CC---TTATCGACTTG-CT-A--------ATACACC-A-CG-AAAAGTCCGTCG-CTGAGaa
gi|16 : AA-GATAATTGA--AA-AGATC-AAGCAACTGCAT-----------G-------------A-----AG---A-----------AAaaaaaaacac
gi|2 : TAAAAGTGATTACTTAG-TCTACTAATAATAAAGTCAAAATTTCAATTGAATAGTAAT---GTACCCA-ATTA-AAA-CA-ATGACAGTTAGGTGTCTCAAACACTGATATTTGGT--TACCATTAA-CAC--------ATAGTCCGGTGT--CAATTAAC-ACTGATAGTC--GT-----GCC-A-CC-G--T------CCTTCAAAAAA--------CC-TAATTA-T-G-ATCGCAAA-CAGC-TT-AATAACATAATATCAA-TGTGATATAACGTTTCTCT----TTTTTCATATT-TGTCTA-G-AAAGAT-ATATTATATATACAGTAAA--TCTTCTA-GTATAAGCTGAAATT-----------------------A----TATGATCCG-TATTTTCGTTTGGTTTGGT-ACTTTTGTG-GGGATGA-TTGTAAA-AATAATTGA--CA-ATGTC-AAGCTACTGTAT-----------G-------------AT--ATAG---A-----------TACGTCTTACAAATT-CCG-TATCGTAAAC--CTTT------TAT-----GAAAAAGAATTCAAA--TATAACGCTGAAAA-AGAAGACTTGTAAGACA--A-CTA----CC---ATCTCGATTTC-CT-AC-------A-AC-CA-AACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCT---------------------GAA-AATAACAC-GGAAAG-TCC-GTCCCCAtattaatgcaa
gi|3 : ttAAAGTGATTAAAAAG-TCTATTGAT-ATAA----------------------TTGTTTAGTGGCCAAATCA-ATA-TA-ATG-TAGTC--------CGGAT-TTAGTTTCTGGC--TGCCACAAAACACTTG------TAGTCCG-TGTTGCCACTAACCACTGATAGCCTGGTGTTCTGCC-A-CC-AAAT------TTTCCAAAAAAAAAAATAACCATAATT--TAG-ATCGCAAAACAGCATG-AATAACATCATTCAGA-TGTATTAGAACGTTTCTTTG---TTTT--AC-TT-TATCT--T-AAAGATAATGTTATTTATTT-TGAAA--TCTTCTT-GTATTAGCTGGAATTGT------------------------------------TATT---------TTTGGT-AGTTTTGTGTGGGGCGT-TTTTAAA-GATAATTGA--AA-AGATCAAAGCAACTGCAT-----------GTAGGAAATGTTTAAT--GCAA---A-----------AACATCTTTAAAATTCCCGTTAACGTAAAG--CTTT------TTT-----
gi|4 : gggaaagtgggggaggggactgccccccagcttcctaccatcgcccatgtttacgttatatttatatctaaatagttatacgtaataagcctacttaatattgttttagaggggacaggcttagaaaattgcttatgtat-ATGTTATTTAC-T-TGAAA--TCTTCTT-GTATA---TAAAGC-------------------AA---A----TATGGTCCG-TGTTTTGGTCCGATTTGGC-AGTTTGTTG-TGGGCGA-CTTTAAA-GATAATTGA--AA-ATATA-AAGCAACTGTAT-------------------------AT--ATAG---ATGATAACGAAAAACATCTTTAAAATT-TCG-TACCGTAAAG--CTTT------TCTTTTGAAAAAAAGTATCCAGG--TATAACGCCAAGGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCGATACC-CT-ACT------ATAC-C--A-CG-AAAAGTCAGTTG-CTGAGCACGCCTAGTCTGG-AAACGCG---------------------TAATGAAAACAC-GGAAAG-TCC-ATCCACA
gi|5 : AGAT-ATATCATATAC-T-TTAAA--A--TCTT-GTGTAAGCTGAAATTATATTCTA----------AA---ACAAATATGATCCG-TATTTCCGTCAGGTTTGTT-ACTTTTGTT-AGGATGA-TTGTAAA-AATAATTGA--CG-ATATC-AAGCTACTGTATCTACAAAAGTTA-------------AT--TCAT---A-----------AACGTCTTAAGAATT-CCA-TAAGATAAAA--CTTT------TAT-----GAAAAAGAATTCAAG--TATAACGCTTGGTA-AGAAGATTTGTAAGACG--C-CTA----CC---TTCTCGATTTC-CT-AC-------A------------------CCGTTG-CTGAGCACGCTTAGTCTGG-AAATGCG---------------------GAA-AATTGCAC-GGAAAG-TCT-GTCCCCtttcaca
gi|6 : -CCG-TAACGTAAAG--CTTT------TTT-----TAAAAAGTATTTAAG--TATAACGTCAAAGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCAATTCC-CT-ACTACATGTATAC-CA---CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACACGCGCAAAAAAAAACCAAAAAAAAAA-AAAAACAC-GGATAGATCC-GTCCCCcattccgc
gi|7 : -ATATC-AAGCAACTGTAT-----------------------------ATAA---A-----------AATGTT-----AATG-CAA-AAACG----G--CTTTAAAAACTAT-----GAAAACGTATTCAAG--TATTACGCTTAGTA-AGAAGATTTGTGAGATA--T-CCA----CC---CTCTTTATCTC-CT-A-------------CA-A-CT-ACA----CGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATAACAC-GGGAAG-TCC-GTCCCCA
gi|8 : gatagatcAA---A-----------AACATCTTTAAAATT-CCG-TAACGGAAAG--CTTT------TTT-----TAAAAAGTATTGAAA--TATAACGCCAAAGA-AGAAAAATTGTGAGACA--T-ATA----CC---TTATTGATTTG-CTAAT-------ATAC-CA-G--G-AAAAGTCCGTCG-CTGAGCA-----------------------------------------AAA-AAAAACAT-GGAGAG-TCC-GTCCCCAttccg
gi|9 : tgcTAAAAGTGACTAAAAAG-TATATTGATA------TCAA----------------TTGTTTAGTGGCAAAATCA-ATGATACATG-TAGTCTGGTGTCACAAACACTttccaca
Alignments
lowQualScore : 1111111111111111111111111111111 11111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 0000000000000000000000000000000 11 1 2222 222 1 555555 1 222 1 1 22222 111 55555555 333333333 222222 2222222222222 1111 00000000000000000000000000000000 000000000000000000000000000000000000000000000000000 111111 111111 11111 333333333333333333333 5555555555555555555555555555555555555555
lowQualScore : 22 1 3 0000000000000000000000000000000 0 8 44 8 0 8888 88 0 3 444 1 3 3 222222 2 555 0 3 2 44444 111 00000000 1 999999999 3 666666 0 0 8 99 0 1 9999999999999 8 2222 5 5 1 77 77 5 5 1 22222222222222222222222222222222 6 2 1 8 99 8 0 8 6 77 5 111111111111111111111111111111111111111111111111111 1 5 5 0 66 222222 1 222222 1 55 7 0 4 0 00000 8888 777 0 4 8 888888888888888888888 0 4 0000000000000000000000000000000000000000 4 1 5 5 5
lowQualScore : .. . . ............................... . . .. . . .... .. . . ... . . . ...... . ... . . . ..... ... ........ . ......... . ...... . . . .. . . ............. . .... . . . .. .. . . . ................................ . . . . .. . . . . .. . ................................................... . . . . .. ...... . ...... . .. . . . . ..... .... ... . . . ..................... . . ........................................ . . . . .
lowQualScore : 00 4 2 4444444444444444444444444444444 6 0 44 0 6 4444 88 8 7 333 0 7 3 333333 0 777 0 2 8 55555 000 55555555 0 555555555 2 888888 8 8 0 00 8 0 4444444444444 0 6666 7 7 0 99 00 7 7 0 33333333333333333333333333333333 7 5 0 0 00 0 6 0 7 99 7 999999999999999999999999999999999999999999999999999 9 0 0 1 11 888888 0 555555 6 55 1 7 0 3 77777 5555 000 6 0 0 555555555555555555555 7 0 7777777777777777777777777777777777777777 4 0 0 0 0
consensus : NNTAAAAGTGATTAAAAAGTCTACTGATGATAAAGTCAAA--TT---AGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAA-CAC---A-GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-A-CC-G-A----TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
Reference ( family-3001 ) : NNTAAAAGTGATTANNAAGTCTACTGATGATAAAGTCAAA--TT--TAGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGGT-TCTGGTTACCACAAA-CAC---G-GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-A-CC-G------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
gi|1 : TAAAAGTGATTAAAGA-TCTAGT--TGATA---TTAAA--TT----GTTTA----------AGTGGCCAAATCACAT--TG-ACTACAGTA-GTTTGTATT-AGC-CTGGT-----GCCACCAAACA-CACTAGA-GTAGTCGGATG---CCACTAAC-ACTG-TAGCCAGGC----TGCC-AGCC-ATAATATTCCCCCAAATA----------TATAATTCAT-G-TTCA-GAAACAGCATGGAATAACATCATTTAAAATGTGATCACACGTTTCTTTGGTCTTTT-ACATTGTATCTAATGAAAGAT-ATGTTATTCTA--TTTG-AAATTCTTTTTAGCATTAACTGGAATTG---T----TACTT-AAAAGCAAATTCA----TATGGTCCGATATTTTGGTCCGATTTGGTGAGTTTTGTG-TGGGTGAATTTTAAAAGTTAATTGATAAACAGATC-AAGCAACTGCAT-----------GTAGA---------ATTATTAATGGCAAA-----------AACATCTTTAAAA-T-CCG-TAACGTAAAAGTTTTT------TTT-----TAAAAAGTATTGAAGATTATAACGCCAAAAAGAAAAAATTTG-GAGAGA--CATTA----CCTCGTTATTGATTTG-CTAAT-------ATAC-C--A-CGAAAAAATCC-TTGCCTGAGC------------------------------------------GAA-AAAAACACAGGATAG-TCCTGTCCCCA
gi|10 : gggagaggggggggcgactggcctctcccggctcctatacggcaccatgtttaacgttatatcatcttatagtaagtgttgtacacttaacgctttacttaactattgtttttaaagacagcttagcaaaaatttgccttaaattgtact-ACTGATAGTCCGGT----TGCCTA-CCAG------TCCTCAATACAA--------CCATAGTT--T-ACATCGCAAAACAGCAT-TAATAACAAAATTG-CAATGTGATAGAACGTTTCAT-----CTTA-ACGTT-TGTCT-AT-AAAGAT-ATATTA-CACA--CTTT-AAA-TCTTC-T-GTATAAGCTGAAATttccac
gi|11 : TAAAAGTGATTACTAAGTCTACTGATGATAAAGTCAAA--TTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCA-ATG-TA-ATGACAGTT-GAGTGTCTCAAACACTGa
gi|12 : cttaatattttttttaaagacagacatagaaaaaatgctaacatgtataatac-ATCGCAAAACAGCAT-GAATAACATCGTTT-GAATGTGATAGAACGTT-----------------TT-TATCT-AT-AAAGAT-ATGTAA-TTTA--TTTG-AAA-TCTTCTT-GCATTAGCTGAAATTGTATT----TAAAACAA----------A----TATGGTCCG-TATTTTGGTCCGATTTG
gi|13 : tAAA--CTTT------TAT-----GAAAACCTATTCAAG--TATTACGCTTAGTA-AGA---TTTGTGAGACA--C-CCATCCACC---CTCTCTATTTC-CT-AC-------A-AC-TA-----------TACGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATTACAC-GGAAAT-TCC-GTCCCCA
gi|14 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAATTGTGAGACAAAT-ATA----CC---TTATCGATTTTGCT-AA-------CTAT-TACA-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAAAACACG---------------------CAA-AAAAAttccgca
gi|15 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAAT-GTGAGACA--T-ATA----CC---TTATCGACTTG-CT-A--------ATACACC-A-CG-AAAAGTCCGTCG-CTGAGaa
gi|16 : AAGATAATTGA-AAAG--ATC-AAGCAACTGCAT-----------G-------------A--------AG---A-----------AAaaaaaaacac
gi|2 : TAAAAGTGATTACTTAGTCTACTAATAATAAAGTCAAAATTT--CAATTGAATAGTAATGTA----CCCAATTA-AAA-CA-ATGACAGTTAG-GTGTCTCAAACACTGATATTTGGTTACCATTAA-CAC---A--TAGTCCGGTGT--CAATTAAC-ACTGATAGTC--GT-----GCC-A-CC-G------TCCTTCAAAAAA--------CC-TAATTA-T-G-ATCGCAAA-CAGC-T-TAATAACATAATAT-CAATGTGATATAACGTTTCTCTT---TTTTCATATT-TGTCT-AG-AAAGAT-ATATTA-TATATACAGT-AAA-TCTTCTA-GTATAAGCTGAAATT---------------------------A----TATGATCCG-TATTTTCGTTTGGTTTGGT-ACTTTTGTG-GGGATG-ATTGT-AAAAATAATTGA-CAAT--GTC-AAGCTACTGTAT-----------G-------------AT-----ATAG---A-----------TACGTCTTACAAATT-CCG-TATCGTAAAC--CTTT------TAT-----GAAAAAGAATTCAAA--TATAACGCTGAAAA-AGAAGACTTGTAAGACA--A-CTA----CC---ATCTCGATTTC-CT-AC-------A-AC-CA-AACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCT---------------------GAA-AATAACAC-GGAAAG-TCC-GTCCCCAtattaatgcaa
gi|3 : ttAAAGTGATTAAAAAGTCTATTGAT------------------------A-TAATTGTTTAGTGGCCAAATCA-ATA-TA-ATG-TAGTC-C-GGATTT-----A--GTT-TCTGGCTGCCACAAAACAC---TTGTAGTCCG-TGTTGCCACTAACCACTGATAGCCTGGTGTTCTGCC-A-CC-AAA----TTTTCCAAAAAAAAAAATAACCATAATT--TAG-ATCGCAAAACAGCAT-GAATAACATCATTC-AGATGTATTAGAACGTTTCTTTG---TTTT-AC-TT-TATCT--T-AAAGATAATGTTA-TTTA--TTTTGAAA-TCTTCTT-GTATTAGCTGGAATTG---T-------------------------------------TATT---------TTTGGT-AGTTTTGTGTGGGGCG-TTTTT-AAAGATAATTGA-AAAG--ATCAAAGCAACTGCAT-----------GTAGGAAATGTTTAAT-----GCAA---A-----------AACATCTTTAAAATTCCCGTTAACGTAAAG--CTTT------TTT-----
gi|4 : gggaaagtgggggaggggactgccccccagcttcctaccatcgcccatgtttacgttatatttatatctaaatagttatacgtaataagcctacttaatattgttttagaggggacaggcttagaaaattgcttatgtat-ATGTTA-TTTA--CTTG-AAA-TCTTCTT-GTATA---TAAAGC----------------AA----------A----TATGGTCCG-TGTTTTGGTCCGATTTGGC-AGTTTGTTG-TGGGCG-ACTTT-AAAGATAATTGA-AAAT--ATA-AAGCAACTGTAT-------------------------AT-----ATAG---ATGATAACGAAAAACATCTTTAAAATT-TCG-TACCGTAAAG--CTTT------TCTTTTGAAAAAAAGTATCCAGG--TATAACGCCAAGGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCGATACC-CT-ACT------ATAC-C--A-CG-AAAAGTCAGTTG-CTGAGCACGCCTAGTCTGG-AAACGCG---------------------TAATGAAAACAC-GGAAAG-TCC-ATCCACA
gi|5 : AGAT-ATATCA-TATA--CTTT-AAA-A--TCTT-GTGTAAGCTGAAATTA---TATTCTA----AA----------ACAAATATGATCCG-TATTTCCGTCAGGTTTGTT-ACTTTTGTT-AGGATG-ATTGT-AAAAATAATTGA-CGAT--ATC-AAGCTACTGTATCTACAAAAGTTA-------------AT-----TCAT---A-----------AACGTCTTAAGAATT-CCA-TAAGATAAAA--CTTT------TAT-----GAAAAAGAATTCAAG--TATAACGCTTGGTA-AGAAGATTTGTAAGACG--C-CTA----CC---TTCTCGATTTC-CT-AC-------A------------------CCGTTG-CTGAGCACGCTTAGTCTGG-AAATGCG---------------------GAA-AATTGCAC-GGAAAG-TCT-GTCCCCtttcaca
gi|6 : -CCG-TAACGTAAAG--CTTT------TTT-----TAAAAAGTATTTAAG--TATAACGTCAAAGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCAATTCC-CT-ACTACATGTATAC-CA---CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACACGCGCAAAAAAAAACCAAAAAAAAAA-AAAAACAC-GGATAGATCC-GTCCCCcattccgc
gi|7 : AT--ATC-AAGCAACTGTAT--------------------------------ATAA---A-----------AATGTT-----AATG-CAA-AAACG----G--CTTTAAAAACTAT-----GAAAACGTATTCAAG--TATTACGCTTAGTA-AGAAGATTTGTGAGATA--T-CCA----CC---CTCTTTATCTC-CT-A-------------CA-A-CT-ACA----CGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATAACAC-GGGAAG-TCC-GTCCCCA
gi|8 : gatagatcAA---A-----------AACATCTTTAAAATT-CCG-TAACGGAAAG--CTTT------TTT-----TAAAAAGTATTGAAA--TATAACGCCAAAGA-AGAAAAATTGTGAGACA--T-ATA----CC---TTATTGATTTG-CTAAT-------ATAC-CA-G--G-AAAAGTCCGTCG-CTGAGCA-----------------------------------------AAA-AAAAACAT-GGAGAG-TCC-GTCCCCAttccg
gi|9 : tgcTAAAAGTGACTAAAAAGTATATTGATA------TCAA------------------TTGTTTAGTGGCAAAATCA-ATGATACATG-TAGTCTG-GTGTCACAAACACTttccaca
Alignments
lowQualScore : 11111111111111111111111111111111 11111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000 11 1 2222 222 44444444 1 222 1 1 22222 1 55555555 333333333 222222 2222222222222 1111 00000000000000000000000000000000 000000000000000000000000000000000000000000000000000 111111 111111 11111 333333333333333333333 5555555555555555555555555555555555555555
lowQualScore : 22 1 3 11111111111111111111111111111111 0 8 44 8 0 8888 88 0 1 444 1 6 44444444 2 555 0 3 2 44444 0 00000000 1 999999999 3 666666 0 0 8 99 0 1 9999999999999 8 2222 5 5 1 77 77 5 5 1 22222222222222222222222222222222 6 2 1 8 99 8 0 8 6 77 5 111111111111111111111111111111111111111111111111111 1 5 5 0 66 222222 1 222222 1 55 7 0 4 0 00000 8888 777 0 4 8 888888888888888888888 0 4 0000000000000000000000000000000000000000 4 1 5 5 5
lowQualScore : .. . . ................................ . . .. . . .... .. . . ... . . ........ . ... . . . ..... . ........ . ......... . ...... . . . .. . . ............. . .... . . . .. .. . . . ................................ . . . . .. . . . . .. . ................................................... . . . . .. ...... . ...... . .. . . . . ..... .... ... . . . ..................... . . ........................................ . . . . .
lowQualScore : 00 4 2 00000000000000000000000000000000 6 0 44 0 6 4444 88 8 0 333 0 7 33333333 0 777 0 2 8 55555 0 00000000 0 555555555 2 888888 8 8 0 00 8 0 4444444444444 0 6666 7 7 0 99 00 7 7 0 33333333333333333333333333333333 7 5 0 0 00 0 6 0 7 99 7 999999999999999999999999999999999999999999999999999 9 0 0 1 11 888888 0 555555 6 55 1 7 0 3 77777 5555 000 6 0 0 555555555555555555555 7 0 7777777777777777777777777777777777777777 4 0 0 0 0
consensus : NNTAAAAGTGATTAAAAAGTCTACTGATGATAAAGTCAAA---T---TAGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
Reference ( family-3001 ) : NNTAAAAGTGATTAAAAAGTCTACTGATGATAAAGTCAAA---T---TAGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
gi|1 : TAAAAGTGATTAAAGA-TCTAGT--TGATA---TTAAA---T---T-GTTTA----------AGTGGCCAAATCACAT--TG-ACTACAGTA-GTTTGTATT-AGC-CTGGT-----GCCACCAAACACACTAGA---GTAGTCGGATG---CCACTAAC-ACTG-TAGCCAGGC----TGCC-AGCCATAATATTCCCCCAAATA----------TATAATTCAT-G-TTCA-GAAACAGCATGGAATAACATCATTTAAAATGTGATCACACGTTTCTTTGGTCTTTT-ACATTGTATCTAATGAAAGAT-ATGTTATTCTA--TTTG-AAATTCTTTTTAGCATTAACTGGAATTG---T----TACTT-AAAAGCAAATTCA----TATGGTCCGATATTTTGGTCCGATTTGGTGAGTTTTGTG-TGGGTGAATTTTAAAAGTTAATTGATAAACAGATC-AAGCAACTGCAT-----------GTAGA---------ATTATTAATGGCAAA-----------AACATCTTTAAAA-T-CCG-TAACGTAAAAGTTTTT------TTT-----TAAAAAGTATTGAAGATTATAACGCCAAAAAGAAAAAATTTG-GAGAGA--CATTA----CCTCGTTATTGATTTG-CTAAT-------ATAC-C--A-CGAAAAAATCC-TTGCCTGAGC------------------------------------------GAA-AAAAACACAGGATAG-TCCTGTCCCCA
gi|10 : gggagaggggggggcgactggcctctcccggctcctatacggcaccatgtttaacgttatatcatcttatagtaagtgttgtacacttaacgctttacttaactattgtttttaaagacagcttagcaaaaatttgccttaaattgtact-ACTGATAGTCCGGT----TGCCTACCAG------TCCTCAATACAA--------CCATAGTT--T-ACATCGCAAAACAGCAT-TAATAACAAAATTG-CAATGTGATAGAACGTTTCAT-----CTTA-ACGTT-TGTCT-AT-AAAGAT-ATATTA-CACA--CTTT-AAA-TCTTC-T-GTATAAGCTGAAATttccac
gi|11 : TAAAAGTGATTACTAAGTCTACTGATGATAAAGTCAAA---TTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCA-ATG-TA-ATGACAGTT-GAGTGTCTCAAACACTGa
gi|12 : cttaatattttttttaaagacagacatagaaaaaatgctaacatgtataatac-ATCGCAAAACAGCAT-GAATAACATCGTTT-GAATGTGATAGAACGTT-----------------TT-TATCT-AT-AAAGAT-ATGTAA-TTTA--TTTG-AAA-TCTTCTT-GCATTAGCTGAAATTGTATT----TAAAACAA----------A----TATGGTCCG-TATTTTGGTCCGATTTG
gi|13 : tAAA--CTTT------TAT-----GAAAACCTATTCAAG--TATTACGCTTAGTA-AGA---TTTGTGAGACA--C-CCATCCACC---CTCTCTATTTC-CT-AC-------A-AC-TA-----------TACGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATTACAC-GGAAAT-TCC-GTCCCCA
gi|14 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAATTGTGAGACAAAT-ATA----CC---TTATCGATTTTGCT-AA-------CTAT-TACA-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAAAACACG---------------------CAA-AAAAAttccgca
gi|15 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAAT-GTGAGACA--T-ATA----CC---TTATCGACTTG-CT-A--------ATACACC-A-CG-AAAAGTCCGTCG-CTGAGaa
gi|16 : AAGATAATTGA-AAAG--ATC-AAGCAACTGCAT-----------G-------------A--------AG---A-----------AAaaaaaaacac
gi|2 : TAAAAGTGATTACTTAGTCTACTAATAATAAAGTCAAAATTT---CAATTGAATAGTAATGTA----CCCAATTA-AAA-CA-ATGACAGTTAG-GTGTCTCAAACACTGATATTTGGTTACCATTAACAC---A----TAGTCCGGTGT--CAATTAAC-ACTGATAGTC--GT-----GCC-ACCG-------TCCTTCAAAAAA--------CC-TAATTA-T-G-ATCGCAAA-CAGC-T-TAATAACATAATAT-CAATGTGATATAACGTTTCTCTT---TTTTCATATT-TGTCT-AG-AAAGAT-ATATTA-TATATACAGT-AAA-TCTTCTA-GTATAAGCTGAAATT---------------------------A----TATGATCCG-TATTTTCGTTTGGTTTGGT-ACTTTTGTG-GGGATG-ATTGT-AAAAATAATTGA-CAAT--GTC-AAGCTACTGTAT-----------G-------------AT-----ATAG---A-----------TACGTCTTACAAATT-CCG-TATCGTAAAC--CTTT------TAT-----GAAAAAGAATTCAAA--TATAACGCTGAAAA-AGAAGACTTGTAAGACA--A-CTA----CC---ATCTCGATTTC-CT-AC-------A-AC-CA-AACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCT---------------------GAA-AATAACAC-GGAAAG-TCC-GTCCCCAtattaatgcaa
gi|3 : ttAAAGTGATTAAAAAGTCTATTGAT-------------------------A-TAATTGTTTAGTGGCCAAATCA-ATA-TA-ATG-TAGTC-C-GGATTT-----A--GTT-TCTGGCTGCCACAAA-AC---ACTTGTAGTCCG-TGTTGCCACTAACCACTGATAGCCTGGTGTTCTGCC-ACCAAA-----TTTTCCAAAAAAAAAAATAACCATAATT--TAG-ATCGCAAAACAGCAT-GAATAACATCATTC-AGATGTATTAGAACGTTTCTTTG---TTTT-AC-TT-TATCT--T-AAAGATAATGTTA-TTTA--TTTTGAAA-TCTTCTT-GTATTAGCTGGAATTG---T-------------------------------------TATT---------TTTGGT-AGTTTTGTGTGGGGCG-TTTTT-AAAGATAATTGA-AAAG--ATCAAAGCAACTGCAT-----------GTAGGAAATGTTTAAT-----GCAA---A-----------AACATCTTTAAAATTCCCGTTAACGTAAAG--CTTT------TTT-----
gi|4 : gggaaagtgggggaggggactgccccccagcttcctaccatcgcccatgtttacgttatatttatatctaaatagttatacgtaataagcctacttaatattgttttagaggggacaggcttagaaaattgcttatgtat-ATGTTA-TTTA--CTTG-AAA-TCTTCTT-GTATA---TAAAGC----------------AA----------A----TATGGTCCG-TGTTTTGGTCCGATTTGGC-AGTTTGTTG-TGGGCG-ACTTT-AAAGATAATTGA-AAAT--ATA-AAGCAACTGTAT-------------------------AT-----ATAG---ATGATAACGAAAAACATCTTTAAAATT-TCG-TACCGTAAAG--CTTT------TCTTTTGAAAAAAAGTATCCAGG--TATAACGCCAAGGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCGATACC-CT-ACT------ATAC-C--A-CG-AAAAGTCAGTTG-CTGAGCACGCCTAGTCTGG-AAACGCG---------------------TAATGAAAACAC-GGAAAG-TCC-ATCCACA
gi|5 : AGAT-ATATCA-TATA--CTTT-AAA-A--TCTT-GTGTAAGCTGAAATTA---TATTCTA----AA----------ACAAATATGATCCG-TATTTCCGTCAGGTTTGTT-ACTTTTGTT-AGGATG-ATTGT-AAAAATAATTGA-CGAT--ATC-AAGCTACTGTATCTACAAAAGTTA-------------AT-----TCAT---A-----------AACGTCTTAAGAATT-CCA-TAAGATAAAA--CTTT------TAT-----GAAAAAGAATTCAAG--TATAACGCTTGGTA-AGAAGATTTGTAAGACG--C-CTA----CC---TTCTCGATTTC-CT-AC-------A------------------CCGTTG-CTGAGCACGCTTAGTCTGG-AAATGCG---------------------GAA-AATTGCAC-GGAAAG-TCT-GTCCCCtttcaca
gi|6 : -CCG-TAACGTAAAG--CTTT------TTT-----TAAAAAGTATTTAAG--TATAACGTCAAAGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCAATTCC-CT-ACTACATGTATAC-CA---CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACACGCGCAAAAAAAAACCAAAAAAAAAA-AAAAACAC-GGATAGATCC-GTCCCCcattccgc
gi|7 : AT--ATC-AAGCAACTGTAT--------------------------------ATAA---A-----------AATGTT-----AATG-CAA-AAACG----G--CTTTAAAAACTAT-----GAAAACGTATTCAAG--TATTACGCTTAGTA-AGAAGATTTGTGAGATA--T-CCA----CC---CTCTTTATCTC-CT-A-------------CA-A-CT-ACA----CGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATAACAC-GGGAAG-TCC-GTCCCCA
gi|8 : gatagatcAA---A-----------AACATCTTTAAAATT-CCG-TAACGGAAAG--CTTT------TTT-----TAAAAAGTATTGAAA--TATAACGCCAAAGA-AGAAAAATTGTGAGACA--T-ATA----CC---TTATTGATTTG-CTAAT-------ATAC-CA-G--G-AAAAGTCCGTCG-CTGAGCA-----------------------------------------AAA-AAAAACAT-GGAGAG-TCC-GTCCCCAttccg
gi|9 : tgcTAAAAGTGACTAAAAAGTATATTGAT------ATCAA-------------------TTGTTTAGTGGCAAAATCA-ATGATACATG-TAGTCTG-GTGTCACAAACACTttccaca
Alignments
lowQualScore : 11111111111111111111111111111111 11111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000 11 1 2222 222 44444444 1 222 1 1 22222 1 55555555 333333333 222222 2222222222222 1111 00000000000000000000000000000000 000000000000000000000000000000000000000000000000000 111111 111111 11111 333333333333333333333 5555555555555555555555555555555555555555
lowQualScore : 22 1 3 11111111111111111111111111111111 0 8 44 8 0 8888 88 0 1 444 1 6 44444444 2 555 0 3 2 44444 0 00000000 1 999999999 3 666666 0 0 8 99 0 1 9999999999999 8 2222 5 5 1 77 77 5 5 1 22222222222222222222222222222222 6 2 1 8 99 8 0 8 6 77 5 111111111111111111111111111111111111111111111111111 1 5 5 0 66 222222 1 222222 1 55 7 0 4 0 00000 8888 777 0 4 8 888888888888888888888 0 4 0000000000000000000000000000000000000000 4 1 5 5 5
lowQualScore : .. . . ................................ . . .. . . .... .. . . ... . . ........ . ... . . . ..... . ........ . ......... . ...... . . . .. . . ............. . .... . . . .. .. . . . ................................ . . . . .. . . . . .. . ................................................... . . . . .. ...... . ...... . .. . . . . ..... .... ... . . . ..................... . . ........................................ . . . . .
lowQualScore : 00 4 2 00000000000000000000000000000000 6 0 44 0 6 4444 88 8 0 333 0 7 33333333 0 777 0 2 8 55555 0 00000000 0 555555555 2 888888 8 8 0 00 8 0 4444444444444 0 6666 7 7 0 99 00 7 7 0 33333333333333333333333333333333 7 5 0 0 00 0 6 0 7 99 7 999999999999999999999999999999999999999999999999999 9 0 0 1 11 888888 0 555555 6 55 1 7 0 3 77777 5555 000 6 0 0 555555555555555555555 7 0 7777777777777777777777777777777777777777 4 0 0 0 0
consensus : NNTAAAAGTGATTAAAAAGTCTACTGATGATAAAGTCAAA---T---TAGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
Reference ( family-3001 ) : NNTAAAAGTGATTAAAAAGTCTACTGATGATAAAGTCAAA---T---TAGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
gi|1 : TAAAAGTGATTAAAGA-TCTAGT--TGATA---TTAAA---T---T-GTTTA----------AGTGGCCAAATCACAT--TG-ACTACAGTA-GTTTGTATT-AGC-CTGGT-----GCCACCAAACACACTAGA---GTAGTCGGATG---CCACTAAC-ACTG-TAGCCAGGC----TGCC-AGCCATAATATTCCCCCAAATA----------TATAATTCAT-G-TTCA-GAAACAGCATGGAATAACATCATTTAAAATGTGATCACACGTTTCTTTGGTCTTTT-ACATTGTATCTAATGAAAGAT-ATGTTATTCTA--TTTG-AAATTCTTTTTAGCATTAACTGGAATTG---T----TACTT-AAAAGCAAATTCA----TATGGTCCGATATTTTGGTCCGATTTGGTGAGTTTTGTG-TGGGTGAATTTTAAAAGTTAATTGATAAACAGATC-AAGCAACTGCAT-----------GTAGA---------ATTATTAATGGCAAA-----------AACATCTTTAAAA-T-CCG-TAACGTAAAAGTTTTT------TTT-----TAAAAAGTATTGAAGATTATAACGCCAAAAAGAAAAAATTTG-GAGAGA--CATTA----CCTCGTTATTGATTTG-CTAAT-------ATAC-C--A-CGAAAAAATCC-TTGCCTGAGC------------------------------------------GAA-AAAAACACAGGATAG-TCCTGTCCCCA
gi|10 : gggagaggggggggcgactggcctctcccggctcctatacggcaccatgtttaacgttatatcatcttatagtaagtgttgtacacttaacgctttacttaactattgtttttaaagacagcttagcaaaaatttgccttaaattgtact-ACTGATAGTCCGGT----TGCCTACCAG------TCCTCAATACAA--------CCATAGTT--T-ACATCGCAAAACAGCAT-TAATAACAAAATTG-CAATGTGATAGAACGTTTCAT-----CTTA-ACGTT-TGTCT-AT-AAAGAT-ATATTA-CACA--CTTT-AAA-TCTTC-T-GTATAAGCTGAAATttccac
gi|11 : TAAAAGTGATTACTAAGTCTACTGATGATAAAGTCAAA---TTTCTAGTTTACTAGTCGTTTAGTGCCCAGATCA-ATG-TA-ATGACAGTT-GAGTGTCTCAAACACTGa
gi|12 : cttaatattttttttaaagacagacatagaaaaaatgctaacatgtataatac-ATCGCAAAACAGCAT-GAATAACATCGTTT-GAATGTGATAGAACGTT-----------------TT-TATCT-AT-AAAGAT-ATGTAA-TTTA--TTTG-AAA-TCTTCTT-GCATTAGCTGAAATTGTATT----TAAAACAA----------A----TATGGTCCG-TATTTTGGTCCGATTTG
gi|13 : tAAA--CTTT------TAT-----GAAAACCTATTCAAG--TATTACGCTTAGTA-AGA---TTTGTGAGACA--C-CCATCCACC---CTCTCTATTTC-CT-AC-------A-AC-TA-----------TACGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATTACAC-GGAAAT-TCC-GTCCCCA
gi|14 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAATTGTGAGACAAAT-ATA----CC---TTATCGATTTTGCT-AA-------CTAT-TACA-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAAAACACG---------------------CAA-AAAAAttccgca
gi|15 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAAT-GTGAGACA--T-ATA----CC---TTATCGACTTG-CT-A--------ATACACC-A-CG-AAAAGTCCGTCG-CTGAGaa
gi|16 : AAGATAATTGA-AAAG--ATC-AAGCAACTGCAT-----------G-------------A--------AG---A-----------AAaaaaaaacac
gi|2 : TAAAAGTGATTACTTAGTCTACTAATAATAAAGTCAAAATTT---CAATTGAATAGTAATGTA----CCCAATTA-AAA-CA-ATGACAGTTAG-GTGTCTCAAACACTGATATTTGGTTACCATTAACAC---A----TAGTCCGGTGT--CAATTAAC-ACTGATAGTC--GT-----GCC-ACCG-------TCCTTCAAAAAA--------CC-TAATTA-T-G-ATCGCAAA-CAGC-T-TAATAACATAATAT-CAATGTGATATAACGTTTCTCTT---TTTTCATATT-TGTCT-AG-AAAGAT-ATATTA-TATATACAGT-AAA-TCTTCTA-GTATAAGCTGAAATT---------------------------A----TATGATCCG-TATTTTCGTTTGGTTTGGT-ACTTTTGTG-GGGATG-ATTGT-AAAAATAATTGA-CAAT--GTC-AAGCTACTGTAT-----------G-------------AT-----ATAG---A-----------TACGTCTTACAAATT-CCG-TATCGTAAAC--CTTT------TAT-----GAAAAAGAATTCAAA--TATAACGCTGAAAA-AGAAGACTTGTAAGACA--A-CTA----CC---ATCTCGATTTC-CT-AC-------A-AC-CA-AACG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCT---------------------GAA-AATAACAC-GGAAAG-TCC-GTCCCCAtattaatgcaa
gi|3 : ttAAAGTGATTAAAAAGTCTATTGAT-------------------------A-TAATTGTTTAGTGGCCAAATCA-ATA-TA-ATG-TAGTC-C-GGATTT-----A--GTT-TCTGGCTGCCACAAA-AC---ACTTGTAGTCCG-TGTTGCCACTAACCACTGATAGCCTGGTGTTCTGCC-ACCAAA-----TTTTCCAAAAAAAAAAATAACCATAATT--TAG-ATCGCAAAACAGCAT-GAATAACATCATTC-AGATGTATTAGAACGTTTCTTTG---TTTT-AC-TT-TATCT--T-AAAGATAATGTTA-TTTA--TTTTGAAA-TCTTCTT-GTATTAGCTGGAATTG---T-------------------------------------TATT---------TTTGGT-AGTTTTGTGTGGGGCG-TTTTT-AAAGATAATTGA-AAAG--ATCAAAGCAACTGCAT-----------GTAGGAAATGTTTAAT-----GCAA---A-----------AACATCTTTAAAATTCCCGTTAACGTAAAG--CTTT------TTT-----
gi|4 : gggaaagtgggggaggggactgccccccagcttcctaccatcgcccatgtttacgttatatttatatctaaatagttatacgtaataagcctacttaatattgttttagaggggacaggcttagaaaattgcttatgtat-ATGTTA-TTTA--CTTG-AAA-TCTTCTT-GTATA---TAAAGC----------------AA----------A----TATGGTCCG-TGTTTTGGTCCGATTTGGC-AGTTTGTTG-TGGGCG-ACTTT-AAAGATAATTGA-AAAT--ATA-AAGCAACTGTAT-------------------------AT-----ATAG---ATGATAACGAAAAACATCTTTAAAATT-TCG-TACCGTAAAG--CTTT------TCTTTTGAAAAAAAGTATCCAGG--TATAACGCCAAGGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCGATACC-CT-ACT------ATAC-C--A-CG-AAAAGTCAGTTG-CTGAGCACGCCTAGTCTGG-AAACGCG---------------------TAATGAAAACAC-GGAAAG-TCC-ATCCACA
gi|5 : AGAT-ATATCA-TATA--CTTT-AAA-A--TCTT-GTGTAAGCTGAAATTA---TATTCTA----AA----------ACAAATATGATCCG-TATTTCCGTCAGGTTTGTT-ACTTTTGTT-AGGATG-ATTGT-AAAAATAATTGA-CGAT--ATC-AAGCTACTGTATCTACAAAAGTTA-------------AT-----TCAT---A-----------AACGTCTTAAGAATT-CCA-TAAGATAAAA--CTTT------TAT-----GAAAAAGAATTCAAG--TATAACGCTTGGTA-AGAAGATTTGTAAGACG--C-CTA----CC---TTCTCGATTTC-CT-AC-------A------------------CCGTTG-CTGAGCACGCTTAGTCTGG-AAATGCG---------------------GAA-AATTGCAC-GGAAAG-TCT-GTCCCCtttcaca
gi|6 : -CCG-TAACGTAAAG--CTTT------TTT-----TAAAAAGTATTTAAG--TATAACGTCAAAGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCAATTCC-CT-ACTACATGTATAC-CA---CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACACGCGCAAAAAAAAACCAAAAAAAAAA-AAAAACAC-GGATAGATCC-GTCCCCcattccgc
gi|7 : AT--ATC-AAGCAACTGTAT--------------------------------ATAA---A-----------AATGTT-----AATG-CAA-AAACG----G--CTTTAAAAACTAT-----GAAAACGTATTCAAG--TATTACGCTTAGTA-AGAAGATTTGTGAGATA--T-CCA----CC---CTCTTTATCTC-CT-A-------------CA-A-CT-ACA----CGTTG-CTGAGCACG------------AACGCG---------------------AAA-AATAACAC-GGGAAG-TCC-GTCCCCA
gi|8 : gatagatcAA---A-----------AACATCTTTAAAATT-CCG-TAACGGAAAG--CTTT------TTT-----TAAAAAGTATTGAAA--TATAACGCCAAAGA-AGAAAAATTGTGAGACA--T-ATA----CC---TTATTGATTTG-CTAAT-------ATAC-CA-G--G-AAAAGTCCGTCG-CTGAGCA-----------------------------------------AAA-AAAAACAT-GGAGAG-TCC-GTCCCCAttccg
gi|9 : tgcTAAAAGTGACTAAAAAGTATATTGAT------ATCAA-------------------TTGTTTAGTGGCAAAATCA-ATGATACATG-TAGTCTG-GTGTCACAAACACTttccaca
blockSeqs : CT C G GATAAAGTCAAATTTCTAGTTTACTAGTC . GA C A TGA CA A ATT T C ACTTG G TTG C A C GTTCT T AAA C AAAAAATAA A TAC . C A TTTTTTCATA . AT A . A TA TG . . A ATATTCTAAAACAAA . G C . TG . . . . A GTAGGAAATGTTTAATGCAAA A C T . AAAAAC A TTTGAA C . T . AATA TCCA . G A CTACATGTATACCACG . CTTAGTCTGGAAACACGCGCAAAAAAAAACCAAAAAAAA T T . A .
blockSeqs : CT C A AATAAAGTCAAAATTTCAATTGAATAGTA . G . A TAG CA T TC C . A . T . A T T . AG A A A ATG . G T TGTTTTAC . AT . . T . T . . T GTATTTAAAACAAA . C T . G . . . . . CTACAAAAGTTAATTCATA T . . . . A G G . A . CC . . . . ACTATTACACG . CTTAGTCTGGAAAACACGC . A . . .
blockSeqs : AA T G ATCAATT . A . . CTG CA . A . . . G A A . TAG . C T CTTAACG . AG . . A . G . . A AAA . G C . T . . . . . ATATAGATGATAACGAAA T . . . . T G G . A . TA . . . . ATACACCACG . CTTAGTCTGGAAACGCTG . T . . .
blockSeqs : AA T G ATAATT . A . . CC . . A . . . T . . T . T . . T GT . C A . A . . . . . GATATAGA A . . . . C G C . G . AC . . . . CAACCAAACG . CCTAGTCTGGAAACGCGT . A . . .
blockSeqs : . . T . G . . A A . . . . . . GAAGA T . . . . A T C . A . CT . . . . CTATACCACG . CTTAGTCTGGAAATGCGG . T . . .
blockSeqs : . . A . T . . A . . ATAAA . . . . . T G C . T . CC . . . . TATACCAGG . AACGCGA . A . . .
blockSeqs : . . . . A T T . A . CT . . . . CAACTA . AACGCGA . T . . .
blockSeqs : . . T C . T . TC . . . . CAACT . A . A
blockSeqs : G . A . TA . . . . CA .
blockSeqCons : ACTAATT************************* A* CA N* CTTACG******* AT** GTAAA*************************** ** ** ** CC*** *** CTTAGTCTGGAAACGCGA**********************
originalCons : NNTAAAAGTGATTAAAAAGTCTACTGATGATAAAGTCAAA---T---TAGTTTA-TAGTCGTTTAGTGGCCAAATCA-ATG-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTT-NAATGTGATAGAACGTTTCTTTG---TTTT-ACGTT-TATCT-AT-AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTG---T----TA----AA----------A----TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGG-AAACGCG---------------------GAA-AANAACAC-GGAAAG-TCC-GTCCCCA
finalCons : NNTAAAAGTGATTAAAAAGTCTACTGATACTAATT-------------------------GTTTAGTGGCCAAATCA-ATA-TA-ATGACAGTC-G-GTGTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA------TCCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCAT-GAATAACATCATTTN-AATGTGATAGAACGTTTCTTCTTACG-------TT-TATCTAT--AAAGAT-ATGTTA-TNTA--CTTT-AAA-TCTTCTT-GTATNAGCTGAAATTGTAAA---------------------------TATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCG-ATTTT-AAAGATAATTGA-AAAT--ATC-AAGCAACTGCAT-----------G-------------AT-----ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACACC---TA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTG-CTGAGCACGCTTAGTCTGGAAACGCGA----------------------AA-AANAACAC-GGAAAG-TCC-GTCCCCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111 111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000 1111 11 1 2222 222 44444444 1 222 1 1 22222 1 4444444444 333333333 222222 666666666666666666666 1111 000000000000000000000000000 000000000000000000000000000000000000000000000000 111111 111111 11111 333333333333333333333 222222222222222 111 333333333333333333
lowQualScore : 22 8 77777777777777777777777777777777777777777 8 7777 8 11 8 0 0000 8 3 5 0 1 444 1 6 44444444 2 555 0 3 2 44444 0 1111111111 1 999999999 3 666666 0 0 8 1 8 0 333333333333333333333 8 2222 5 66 77 77 5 5 1 1 333333333333333333333333333 6 2 1 8 99 8 0 6 6 77 5 111111111111111111111111111111111111111111111111 1 66 5 0 66 222222 1 222222 1 55 7 0 4 0 00000 8888 777 0 4 8 888888888888888888888 0 000000000000000 222 222222222222222222 5 5 5 5
lowQualScore : .. . ......................................... . .... . .. . . .... . . . . . ... . . ........ . ... . . . ..... . .......... . ......... . ...... . . . . . . ..................... . .... . .. .. .. . . . . ........................... . . . . .. . . . . .. . ................................................ . .. . . .. ...... . ...... . .. . . . . ..... .... ... . . . ..................... . ............... ... .................. . . . .
lowQualScore : 00 0 44444444444444444444444444444444444444444 0 0000 0 88 0 6 4444 0 2 6 8 0 333 0 7 33333333 0 777 0 2 8 55555 0 0000000000 0 555555555 2 888888 8 8 0 0 0 8 444444444444444444444 0 6666 7 77 99 00 7 7 0 0 888888888888888888888888888 7 5 0 0 00 0 6 7 7 99 7 999999999999999999999999999999999999999999999999 9 44 0 1 11 888888 0 555555 6 55 1 7 0 3 77777 5555 000 6 0 0 555555555555555555555 7 444444444444444 222 888888888888888888 3 0 0 0
consensus : NNTAAAAGTGATTAAAAAGTCTA-TTGAT----------------------ATTAAA-------------TTGTTTA-GTGG----CCAAATCA-AT-ATA-ATGACAGTC-G-GT-GTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA-T------CCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCATG-AATAACATCATTTNAA-TGTGATAGAACGTTTCT---TT------TT----ACGTT-TATCTA-T-AAAGAT-ATGTTATN-TA--CTTT-AAAT-CTTCTT-GTATNAGCTGAAATTGT------------A----------A---ATATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCGA-TTTTAAA-GATAATTGA-AAATA--TC-AAGCAACTGCAT-----------G-------------AT--ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTGGAA---ACGCG---AAAA------------------ANAACAC-GGAAAG-TCC-GTCCCCA
Reference ( family-3001 ) : NNTAAAAGTGATTAAAAAGTCTA-CTGAT----------------------ACTAA--------------TTGTTTA-GTGG----CCAAATCA-AT-ATA-ATGACAGTC-G-GT-GTCTCAAACACTGNT-TCTGGCTACCANAAACAC---A---GTAGTCCGGTGT--CCACTAAC-ACTGATAGCCCGGT----TGCC-ACCGA-T------CCTCCAAANAA--------CCATAATT--T-G-ATCGCAAAACAGCATG-AATAACATCATTTNAA-TGTGATAGAACGTTTCT---TC------TT----ACGTT-TATCTA-T-AAAGAT-ATGTTATN-TA--CTTT-AAAT-CTTCTT-GTATNAGCTGAAATTGT------------A----------A---ATATGGTCCG-TATTTTGGTCCGATTTGGT-AGTTTTGTG-NGGGCGA-TTTTAAA-GATAATTGA-AAATA--TC-AAGCAACTGCAT-----------G-------------AT--ATAG---A-----------AACGTCTTTAAAATT-CCG-TAACGTAAAG--CTTT------TNT-----GAAAAAGTATTCAAG--TATAACGCCGAAGA-AGAAAATTTGTGAGACA--C-CTA----CC---TTATCGATTTC-CT-AC-------ATAC-CA-A-CG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTGGAA---ACGCG---AAAA------------------ANAACAC-GGAAAG-TCC-GTCCCCA
gi|1 : TAAAAGTGATTAAAGA-TCTAGTTGAT----------------------ATTAAA-------------TTGTTTAAGTGG----CCAAATCACAT--TG-ACTACAGTA-G-TTTGTATTAG-C-CTGGT-----GCCACCAAACACACTAGA---GTAGTCGGATG---CCACTAAC-ACTG-TAGCCAGGC----TGCC-AGCCA-TAATATTCCCCCAAATA----------TATAATTCAT-G-TTCA-GAAACAGCATGGAATAACATCATTTAAAATGTGATCACACGTTTCT---TTGGTCTTTT----ACATTGTATCTAATGAAAGAT-ATGTTATTCTA--TTTG-AAATTCTTTTTAGCATTAACTGGAATTGTTACTTAAAAGCAA----------ATTCATATGGTCCGATATTTTGGTCCGATTTGGTGAGTTTTGTG-TGGGTGAATTTTAAAAGTTAATTGATAAACAGATC-AAGCAACTGCAT-----------GTAGAATT------ATTAATGGCAAA-----------AACATCTTTAAAAT--CCG-TAACGTAAAAGTTTTT------TTT-----TAAAAAGTATTGAAGATTATAACGCCAAAAAGAAAAAATTTG-GAGAGA--CATTA----CCTCGTTATTGATTTG-CTAAT-------ATAC-C--A-CGAAAAAATCC-TTGC--------------CTGA-------GCG---AAAA------------------A-AACACAGGATAG-TCCTGTCCCCA
gi|10 : gggagaggggggggcgactggcctctcccggctcctatacggcaccatgtttaacgttatatcatcttatagtaagtgttgtacacttaacgctttacttaactattgtttttaaagacagcttagcaaaaatttgccttaaattgtact-ACTGATAGTCCGGT----TGCCTACCAG-T------CCTCAATACAA--------CCATAGTT--T-ACATCGCAAAACAGCATT-AATAACAAAATTGCAA-TGTGATAGAACGTTTCA---TC------TTA---ACGTT-TGTCTA-T-AAAGAT-ATATTACA-CA--CTTT-AAAT-CTTC-T-GTATAAGCTGAAATttccac
gi|11 : TAAAAGTGATTACTAAGTCTA-CTGATGATAAAGTCAAATTTCTAGTTTACTAG--------------TCGTTTA-GTGC----CCAGATCA-AT-GTA-ATGACAGTT-GAGT-GTCTCAAACACTGa
gi|12 : cttaatattttttttaaagacagacatagaaaaaatgctaacatgtataatac-ATCGCAAAACAGCATG-AATAACATCGTTTGAA-TGTGATAGAACGTT-----------------------TT-TATCTA-T-AAAGAT-ATGTAATT-TA--TTTG-AAAT-CTTCTT-GCATTAGCTGAAATTGTATTTAAAAC---A----------A---ATATGGTCCG-TATTTTGGTCCGATTTG
gi|13 : tAAA--CTTT------TAT-----GAAAACCTATTCAAG--TATTACGCTTAGTA-AGA---TTTGTGAGACA--C-CCATCCACC---CTCTCTATTTC-CT-AC-------A-AC-TA-----------TACGTTGCTGAGCACG-----------A---ACGCG---AAAA------------------ATTACAC-GGAAAT-TCC-GTCCCCA
gi|14 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAATTGTGAGACAAAT-ATA----CC---TTATCGATTTTGCT-AA-------CTAT-TACA-CG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTGGAAAACACGCA---AAAA------------------AAAAttccgca
gi|15 : GTATTGAAG--TATAACGCCAAAGA-AGAAAAAT-GTGAGACA--T-ATA----CC---TTATCGACTTG-CT-A--------ATACACC-A-CG-AAAAGTCCGTCGCTGAG
gi|16 : AA-GATAATTGA-AAAGA--TC-AAGCAACTGCAT-----------G-------------A-----AG---A-----------AAaaaaaaacac
gi|2 : TAAAAGTGATTACTTAGTCTA-CTAAT----------------------AATAAAGTCAAAATTTCAATTGAATA-GTAATGTACCCAATTA-AA-ACA-ATGACAGTTAG-GT-GTCTCAAACACTGATATTTGGTTACCATTAACAC---A----TAGTCCGGTGT--CAATTAAC-ACTGATAGTC--GT-----GCC-ACCG--T------CCTTCAAAAAA--------CC-TAATTA-T-G-ATCGCAAA-CAGC-TT-AATAACATAATATCAA-TGTGATATAACGTTTCT---CT------TTTTTCATATT-TGTCTA-G-AAAGAT-ATATTATA-TATACAGT-AAAT-CTTCTA-GTATAAGCTGAAATT-----------------------------ATATGATCCG-TATTTTCGTTTGGTTTGGT-ACTTTTGTG-GGGATGA-TTGTAAA-AATAATTGA-CAATG--TC-AAGCTACTGTAT-----------G-------------AT--ATAG---A-----------TACGTCTTACAAATT-CCG-TATCGTAAAC--CTTT------TAT-----GAAAAAGAATTCAAA--TATAACGCTGAAAA-AGAAGACTTGTAAGACA--A-CTA----CC---ATCTCGATTTC-CT-AC-------A-AC-CA-AACG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTGGAA---ACGCT---GAAA------------------ATAACAC-GGAAAG-TCC-GTCCCCAtattaatgcaa
gi|3 : ttAAAGTGATTAAAAAGTCTA-TTGAT----------------------A-TAA--------------TTGTTTA-GTGG----CCAAATCA-AT-ATA-ATG-TAGTC-C-GG-ATTT-----A--GTT-TCTGGCTGCCACAAA-AC---ACTTGTAGTCCG-TGTTGCCACTAACCACTGATAGCCTGGTGTTCTGCC-ACCAAAT------TTTCCAAAAAAAAAAATAACCATAATT--TAG-ATCGCAAAACAGCATG-AATAACATCATTCAGA-TGTATTAGAACGTTTCTTTGTT------TT----AC-TT-TATCT--T-AAAGATAATGTTATT-TA--TTTTGAAAT-CTTCTT-GTATTAGCTGGAATTGT--------------------------------------TATT---------TTTGGT-AGTTTTGTGTGGGGCGT-TTTTAAA-GATAATTGA-AAAGA--TCAAAGCAACTGCAT-----------GTAGGAAATGTTTAAT--GCAA---A-----------AACATCTTTAAAATTCCCGTTAACGTAAAG--CTTT------TTT-----
gi|4 : gggaaagtgggggaggggactgccccccagcttcctaccatcgcccatgtttacgttatatttatatctaaatagttatacgtaataagcctacttaatattgttttagaggggacaggcttagaaaattgcttatgtat-ATGTTATT-TA--CTTG-AAAT-CTTCTT-GTATA---TAAA---GC------------A----------A---ATATGGTCCG-TGTTTTGGTCCGATTTGGC-AGTTTGTTG-TGGGCGA-CTTTAAA-GATAATTGA-AAATA--TA-AAGCAACTGTAT-------------------------AT--ATAG---ATGATAACGAAAAACATCTTTAAAATT-TCG-TACCGTAAAG--CTTT------TCTTTTGAAAAAAAGTATCCAGG--TATAACGCCAAGGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCGATACC-CT-ACT------ATAC-C--A-CG-AAAAGTCAGTTGCTGAGCACGCCTAGTCTGGAA---ACGCGT--AATG------------------AAAACAC-GGAAAG-TCC-ATCCACA
gi|5 : AGAT-ATATCATA-TA--CTTT-AAAA---TCTT-GTGTAAGCTGAAATTAT------------ATTCTAAAACAA---ATATGATCCG-TATTTCCGTCAGGTTTGTT-ACTTTTGTT-AGGATGA-TTGTAAA-AATAATTGA-CGATA--TC-AAGCTACTGTATCTACAAAAGTTA-------------AT--TCAT---A-----------AACGTCTTAAGAATT-CCA-TAAGATAAAA--CTTT------TAT-----GAAAAAGAATTCAAG--TATAACGCTTGGTA-AGAAGATTTGTAAGACG--C-CTA----CC---TTCTCGATTTC-CT-AC-------A------------------CCGTTGCTGAGCACGCTTAGTCTGGAA---ATGCG---GAAA------------------ATTGCAC-GGAAAG-TCT-GTCCCCtttcaca
gi|6 : -CCG-TAACGTAAAG--CTTT------TTT-----TAAAAAGTATTTAAG--TATAACGTCAAAGA-AGAAAATTTGTGAGACA--C-TTA----TC---TTATCAATTCC-CT-ACTACATGTATAC-C--A-CG-AAAAGTCCGTTGCTGAGCACGCTTAGTCTGGAA---ACACGCGCAAAAAAAAACCAAAAAAAAAAAAAAACAC-GGATAGATCC-GTCCCCcattccgc
gi|7 : ATA--TC-AAGCAACTGTAT-----------------------------ATAA---A-----------AATGTT-----AATG-CAA-AAACG----G--CTTTAAAAACTAT-----GAAAACGTATTCAAG--TATTACGCTTAGTA-AGAAGATTTGTGAGATA--T-CCA----CC---CTCTTTATCTC-CT-A-------------CA-A-CT-ACA----CGTTGCTGAGCACG-----------A---ACGCG---AAAA------------------ATAACAC-GGGAAG-TCC-GTCCCCA
gi|8 : gatagatcAA---A-----------AACATCTTTAAAATT-CCG-TAACGGAAAG--CTTT------TTT-----TAAAAAGTATTGAAA--TATAACGCCAAAGA-AGAAAAATTGTGAGACA--T-ATA----CC---TTATTGATTTG-CTAAT-------ATAC-CA-G--G-AAAAGTCCGTCGCTGAGCA-------------------------AAAA------------------AAAACAT-GGAGAG-TCC-GTCCCCAttccg
gi|9 : tgcTAAAAGTGACTAAAAAGTATA-TTGAT----------------------ATCAA--------------TTGTTTA-GTGG----CAAAATCA-ATGATACATG-TAGTCTG-GT-GTCACAAACACTttccaca