lowQualScore : 88888888888888888888 33333 1 333333 1 2222222222 444444 1 333 4 1 1 1 111 6666666666666666666666 222 111111 111 444444444 1 3333
lowQualScore : 0 6 44444444444444444444 00000 1 55 6 3 6 111111 3 0000000000 000000 6 555 0 5 6 7 2 88 7 8 7 2 777 9999999999999999999999 222 8 1 999999 999 66 4 55 88 5 3 666666666 5 5 8888 4 5 4444
lowQualScore : . . .................... ..... . .. . . . ...... . .......... ...... . ... . . . . . .. . . . . ... ...................... ... . . ...... ... .. . .. .. . . ......... . . .... . . ....
lowQualScore : 8 0 55555555555555555555 33333 7 88 7 3 7 222222 3 6666666666 888888 6 000 0 0 7 3 3 33 3 3 3 3 555 0000000000000000000000 000 0 0 222222 000 11 4 33 22 7 0 333333333 7 9 0000 7 0 0000
consensus : AATACAAAGGTCAAGCATAAGAAATATTGTACAAAGATAT------TAATG--AA-AA--AATAT--TTGTTGGGAATGTGACAG-TAT-TG-TAT--AGAGTTTTAC-ATGAATAG-----AGTTAAATTAAAGTTTGCCAAGTAATGCTACATGTATGTATGCAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGTAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTACGAACGTAAGAAATTGATTTTGCAA---TTAAAATCCGTAT--GTATAT-----TCAGAACTG-CCAT-TTAAAATA------TAGTTTATT--TGAA--AAGGGAC-ACC-GATGTCAAGAAATCGC-TGTCGAA-GTAT--ATCTC-TNTGCTGAGTA-AA-TTTNGACATTNNAGGAAATAT
Reference ( gi|3 ) : AATACAAAGGTCAAGCATAAGAAGTATTGTACAAAGATAT------TAATG--AACAA--AATAT--T--TTAGGAATGCAACAG-TAT-TG-TAT--AATTTTTTAC-ATGAATAG-----AATTTAAT-----TTTGCCTAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATAT-TCAATCCACCCCATGGAAAAAGGAACATATATCAAAAACGCTTAGTGGATTTAATGTAATTATGTACATAAGAAATTAATTTTGCAA---TTAATCTCCATAT--GTA-AT-----TCAGAACTG-C-AT-TTAAAATA------TAGTTTATT--AGAA--AAGGGAC-ACC-GATGTCAAGAAATTGC-TGTCG-A-GTATA-ATCTC-TATGCTGAGTA-AA-TTTAGAAATTTCGTGAAATATGGCAGCA
gi|7 : AATACAAAGGTCAAGCATAAGAAATATTGTACAAAGATATCAATGATAATG--AACAA--AATAT--T--TTAGGAATGCAACAG-CAT-TG-TATTAAACTTTTTAC-ATGAACAG-----AATTGAAT-----TTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTT
gi|10 : aAATATAAAGGTCAAGCTTAAGAAATATTGTACAAAGATAT--------------------AATAT--TTGTTGAGAATGTAACAG-TAT-TG-TAT--AGAGTTTTAC-ATGAATAGAGTTAAATTAAAT-----TTTGCCAAGTAATGCTACATATATGTATGCAACTGGTTCcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataactatatatcaatccaccccatg
gi|9 : AATATAAAGGTCAAGCTTAAGAAATATTGTACAAAGATAT--------------------AATAT--TTGTTGAGAATGTGACAG-TATATG-TAT--AGAGTTTTACGATGAATAG-----AGTTAAATTAAAGTTTGCCAAGTAATGCTACATcacgcacgcatgcacatacaatatagatcaatccagcccattgacagaacagaaaggagaagatgatgcaaaaag
gi|8 : aaaatcacaaaaccgtttgagtaaaatggattattacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATATAAAGGTCAAGCTTAAGAAATATTGTACAAAGATAT--------------------AATAT--TTGTTGAGAATGTGACAG-TATATG-TAT--AGAGTTTTACGATGAATAG-----AGTTAAATTAAAGTTTGCCAAGTAATGCTACATaca
gi|17 : aaaatcacaaaaccgtttgagtaaaatggattatttacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATACAAAGGTCAAGCATAAAAAATATTGTACAAAGATATGAATGATAATG--AACAA--AATAT--T--TTAGGAAaca
gi|2 : aAATACAAAGGTCAAGCATAAGAAACCTTATACAAAAATAT------TATTG--ATAAC--AGTATCAT--TTGGAAATGTGACAA-TAT-TATTAT--AA-GGTTTAC-ATGAACA----------TAGT--------------TAATACTACATGTA
gi|19 : AATACAAATGTCAAGCATAAGAAATATTGTACAAAGATAT------GAATgtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaattcgaatgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|15 : AATACAAAGGTCAAGCATAAGAAATA---TACTAAGATAA------GAGTGATAATAAATAGTATTAT--TTGGAAATTAGATAGTTAT-TA-TAA--AGAGTTTTAC-ATGAATA
gi|7 : ACTATATATCAATCCACCCCATGca
gi|11 : aaatacaaaggtcaagcataagaaatattgtacaaagatatcaatgataatgaacaaaatattttaggaatgcaacagcattgtattaaactttttacatgaacagaattgaattttgccaagtaatgctacatgtatggtaactggttcttcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataATGCAAAAAGGAATATATATCAAAAACGTTTAGTGGATTTAATGTAATTATGTTCATAAGAAA-TGATTTTGCAA---TTAAAGT-CATAT--GTATCT-----TCAGAACTGCC-AT-TTAAAATA------TAGTTTATT--TGAA--AAGGGAC-ACC-GCTGTCGAG
gi|4 : tcatacataacaatagatcaattcagttcaaggagaatgaactgataggacgaaatgAAAAATTAACA-ATATCAAAAGCGCTTAGAAGATTTAATGTAATTATGAACAAAAGAAATT-ATTTTACAA---TTAAAAT-TATATGGGT--AT-----TCTGAACTGTC-AT-TTATAATATACATGTAGTTCATT--TGGA--AAGGGCC-ACT-ACTGTC-AGAAATTGC-TGTCG-ACGTAT--ATCTC-TTTGCAGAGTA-AA-TTTTGGCAATCCAGGAAATAgtatatc
gi|1 : acatcacacacatataatagagatcaatccagcccgttggaaggaaagatcagaaaaaagaaaatagttcAATAGTAACATGCATCAAAG-CACCAGGCCGCTTTA-TGTAATAGCGAACGTAAGAAATTATTTTGGCAAACTTCAAGATTAGAAT--G-A-ATACGCCTTA-AACGC-C-ATGTTACGGTA------TAG-TTATC--TGAA--AAGAGAC-GAC-AATGTCACCAAATTGT-TGTAGAA-GAATA-TCTTC-TTTGCTCACTA-TA-TTTatgcaatatttctttcacaatccatggcacaaatgcaaaacagtgtgggtaatcagtcaagtaaatctttcaatatatgagcatctaaattactaagatgtattcgtaaagggcaagaaaacataatatatttt
gi|5 : atataaagggtaagcataataataaaccttgatatagaaaaaaaaaaccccggggataattaacagtattagttgcgagattgtgacactattgtaatgaagtttgtttgaagtattatgcttatgaaattattttttaagatcagctggtttctaccaaacagcaccggacatttagagaccctttcactagaaaaacacacatacatacatcacatgtatcatagagttcaatccaacccgttgaagaaaataaaagagagggaaaaccatagtgcaaaacatactatatATTTTGCAA---TTAAAATC-GTGT--GTATAT-----TTAGAACTG-CCAT-TTAAGATA------TAGTTTATT--TGAA--AAGGGAC-ACC-GATGTtggcacatctttcaagaactaatatacatgtcttttcgaattctggtcaaatgcaaatagtgtgggtcatcagttaatcttttaatagat
gi|6 : -AT-----GCAGAACTG-CCAT-TTAAAACA------TAGTTTATT--TGAA--AAGGGAC-ACT-TATGCCAAGAAATTGT-TG-------------TCTC-TATGCTGAGTA-AATTTTGGACATTGAAGGAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatgcatatttcattcgaatttatggccacagtgcaaacggtgtgggtcatcagtcaagtaccggtaatttttcaataaatgagcatttaaattacttgctttatttcgtaattaacagagaataatattttcttttctattgccaaaattatctagtactttatgactttcggaat
gi|14 : tatgaacagaaatggtcggattactttaaaat------TGGTTCATTTGAGAA--AAGG--C-AAC-AATGTCAAGAAATTGC-TGTTGAA-GAAT--ATTTC-CTTGCTGAGTATAT-TTTAGACATTtaaatgcatttttccttcaaattcatgaccacaatgcaaacagtgtgggtcatcagtcaagtaatctttcaataaatgagcatttttaaaaattacttggcaatgctttattttgcaattgatagaaaacaatattttcttttctattgccaacattaaagtgctttttgactttcggaat
gi|2 : ATT--CGAATGAAGGGAC-ACC-CATGTTACGAAATTGC-TGTGG-A--TAAATATTTC-TTTGCTGGGTA-CA-TTTcaaaggaaaacatgtaatgccactttgctt
gi|18 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaTT--GAAA--AAGGGAC-ACCGGATGTC-AGAAATCGCTTCTCGAA-GTAT--ATCTC-TATtggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|16 : GAA--AAGGGACCACC-GATGTCA--GAATCGC-TCTCGAA-GTAT--ATCTCATATG--AAGGA-AA-T
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CATAGCCTATGTAGGCCCCCTCCCAAATACAATGGTCAAGCATAAGAAACCTTACAGAAAATATGACTGATAACAGTATTTTTTGATGTGACAATGAAAATGGTTCATACGAGTTTGTTGAA
Unaligned ( gi|13 ): TCACATGCATACATACATTTAATCAATTCAGCCCGCTGGGAGAAAAGAAAGAAGAAGAAAAAAAAATGCAACAGTTTTAGCGCTTCTAAGAATGTAGCTATATATGAACAAAAGAAA
Alignments
lowQualScore : 777777777777777777777 11 1111 1 1 22222222 333 777777777777777777777777777777777777777777777777777777777777777777777777777 1 1111 111 111 2 111 111111 1 1111
lowQualScore : 4 222222222222222222222 77 0 5 0000 0 5 66 55 66 1 6 22222222 777 0 555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 0 0 77 0 0 2 3333 2 999 6 111 5 1 111 6 666666 2 55 4 4 4 8 2 5 1 00 3 5 5 5 1 5 1 1 4444 888
lowQualScore : . ..................... .. . . .... . . .. .. .. . . ........ ... . ........................................................................... . . . . .. . . . .... . ... . ... . . ... . ...... . .. . . . . . . . .. . . . . . . . . .... ...
lowQualScore : 0 888888888888888888888 11 9 0 6666 0 0 99 22 99 4 7 00000000 777 7 000000000000000000000000000000000000000000000000000000000000000000000000000 5 6 8 8 88 8 8 8 8888 8 666 7 777 0 0 777 7 444444 3 55 0 0 0 9 0 0 4 44 8 0 0 0 0 7 4 0 2222 777
consensus : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATTT-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGTAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGTA--CATAAGAAATTGATTTTG-CAA---TTAAAATC-GTATGTATAT---TCAGAACTGCCAT-TTAAAATATA------GTTTATTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
Reference ( family-2976 ) : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATTTGTTGGGAATGTGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATGTATGCAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGTAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTACGAA--CGTAAGAAATTGATTTTG-CAA---TTAAAATCCGTATGTATAT---TCAGAACTGCCAT-TTAAAATATA------GTTTATTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATCGCTG-TCGAAGTAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
gi|1 : AATAGTAACATGCATCAAA-GCACCAGGCCGCTTTA-TGTAATAGCGAA--CGTAAGAAATT-ATTTTGGCAAACTTCAAGATTAGAATGAATACGCCTTA-AAC-GCCATGTTACGGTATA------GTT-ATCTGAA--AA-GAGAC-GACA-ATGTCACCAAATTGTTG-TAGAAGAAT-ATCTTC-TTTGCTCACTA-TA-TTTTGGCACATCTT-TCAAGAACTA
gi|10 : atataaagggtaagcataataataaaccttgatatagaaaaaaaaaaccccggggataattaacagtattagttgcgagattgtgacactattgtaatgaagtttgtttgaagtattatgcttatgaaattattttttaagatcagctggtttctaccaaacagcaccggacatttagagaccctttcactagaaaaacacacatacatacatcacatgtatcatagagttcaatccaacccgttgaagaaaataaaagagagggaaaaccatagtgcaaaacatactatatAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATTTGTTGAGAATGTAACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---ATTTTGCCAAGTAATGCTACATATATGTATGCAACTGGTTCatatacatgtcttttcgaattctggtcaaatgcaaatagtgtgggtcatcagttaatcttttaatagat
gi|11 : ATGCAAAAAGGAATATATATCAAAAACGTTTAGTGGATTTAATGTAATTATGTT--CATAAGAAAT-GATTTTG-CAA---TTAAAGTC-ATATGTATCT---TCAGAACTGCCAT-TTAAAATATA------GTTTATTTGAA--AA-GGGAC-ACCG-CTGTCGAGcacgcacgcatgcacatacaatatagatcaatccagcccattgacagaacagaaaggagaagatgatgcaaaaag
gi|12 : tcatacataacaatagatcaattcagttcaaggagaatgaactgataggacgaaatgAATACAATGGTCAAGCATAAGAAACCT--TACAGAAAATAT------GACTGAT---A-AC-AGTATTTTTTG---ATGTGACAA-TGAAAAT-GG-TTCATACGAG--TTTgtatatc
gi|14 : catagcctatgtaggccccctcccaTG------GTTCATTTGAG--AA-AAGGC-AACA-ATGTCAAGAAATTGCTG-TTGAAGAAT-ATT-TC-CTTGCTGAGTATAT-TTTAGACA----TTCAAAGGAAAgttgaa
gi|15 : AATACAAAGGTCAAGCATAAGAAATA---TACT-AAGATAA------GAGTGATAATA-AATAGTATTATTTGGAAATTAGATAGTT----AT-TA-T--AAA-GAG--TTTTAC-ATGAATAacatgtaatgccactttgctt
gi|16 : TTGAA--AA-GGGACCACCG-ATGTCAG--AATCGCTC-TCGAAGTAT-ATC-TCATATG--AAGGA-AA-Tca
gi|17 : AATACAAAGGTCAAGCATAAAAAATATTGTACA-AAGATATGAATGATAATGA----ACAA-AATATT--TTAGGAAaatgtatatttccttcaaa
gi|18 : aTTGAA--AAAGGGAC-ACCGGATGTCA-GAAATCGCTTCTCGAAGTAT-ATC-TC-TAT
gi|19 : AATACAAATGTCAAGCATAAGAAATATTGTACA-AAGATAT------GAAT
gi|2 : AATACAAAGGTCAAGCATAAGAAACCTTATACA-AAAATAT------TATTGAT---A-AC-AGTATCATTTGGAAATGTGACAA-T----AT-TATT--ATA--AG--GTTTAC-ATGAACATAGTTAATACTACATGTAGTTTGCTGAATTGTGCTGC
gi|2 : TGCAAAAATTGTCATGTAT-GAAAGCGCTTCGAAGATTTAATGTA--CATGTAGTTATAAGCAA--GAATTTA-CAA---TTCGAATgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaattcgaatgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|2 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatatATTCGAATGAA-GGGAC-ACCC-ATGTTACGAAATTGCTG-TGGATAAAT-ATT-TC-TTTGCTGGGTA-CATTTTGGACA----AT-CAAGGAAATAgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|3 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaAATACAAAGGTCAAGCATAAGAAGTATTGTACA-AAGATAT------TAATGA----ACAA-AATATTT--TAGGAATGCAACAG-T----AT-TG-T--ATA-ATT--TTTTAC-ATGAATAGAATTTA-ATT---------TTGCCTAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATAT-TCAATCCACCCCATGGAAAAAGGAACATATATCAAAAACGCTTAGTGGATTTAATGTAATTATGTA--CATAAGAAATTAATTTTG-CAA---TTAATCTCCATATGTA-AT---TCAGAACTGC-AT-TTAAAATATA------GTTTATTAGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCG-AGTATAATC-TC-TATGCTGAGTA-AA-TTTAGAAA----TT-TCGTGAAATATgtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|4 : CAAAAATTAACA-ATATCAAAAGCGCTTAGAAGATTTAATGTAATTATGAA--CAAAAGAAATT-ATTTTA-CAA---TTAAAATT-ATATGGGTAT---TCTGAACTGTCAT-TTATAATATACATGTAGTTCATTTGGA--AA-GGGCC-ACTA-CTGTCA-GAAATTGCTG-TCGACGTAT-ATC-TC-TTTGCAGAGTA-AA-TTTTGGCA----AT-CCAGGAAATAggcagca
gi|5 : acatcacacacatataatagagatcaatccagcccgttggaaggaaagatcagaaaaaagaaaatagttATTTTG-CAA---TTAAAATC-GTGTGTATAT---TTAGAACTGCCAT-TTAAGATATA------GTTTATTTGAA--AA-GGGAC-ACCG-ATGTatgcaatatttctttcacaatccatggcacaaatgcaaaacagtgtgggtaatcagtcaagtaaatctttcaatatatgagcatctaaattactaagatgtattcgtaaagggcaagaaaacataatatatttt
gi|6 : ATAT---GCAGAACTGCCAT-TTAAAACATA------GTTTATTTGAA--AA-GGGAC-ACTT-ATGCCAAGAAATTGTTG------------TC-TC-TATGCTGAGTA-AATTTTGGACA----TT-GAAGGAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatgcatatttcattcgaatttatggccacagtgcaaacggtgtgggtcatcagtcaagtaccggtaatttttcaataaatgagcatttaaattacttgctttatttcgtaattaacagagaataatattttcttttctattgccaaaattatctagtactttatgactttcggaat
gi|7 : tatgaacagaaatggtcggattactttaaaAATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATATCAATGATAATGA----ACAA-AATATT--TTAGGAATGCAACAG-C----AT-TG-T--ATT-AAACTTTTTAC-ATGAACAGAATTGA-AT---------TTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTtaaatgcatttttccttcaaattcatgaccacaatgcaaacagtgtgggtcatcagtcaagtaatctttcaataaatgagcatttttaaaaattacttggcaatgctttattttgcaattgatagaaaacaatattttcttttctattgccaacattaaagtgctttttgactttcggaat
gi|7 : aACTATATATCAATCCACCCCATGcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataactatatatcaatccaccccatg
gi|8 : aaatacaaaggtcaagcataagaaatattgtacaaagatatcaatgataatgaacaaaatattttaggaatgcaacagcattgtattaaactttttacatgaacagaattgaattttgccaagtaatgctacatgtatggtaactggttcttcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATTTGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACAT
gi|9 : aaaatcacaaaaccgtttgagtaaaatggattatttacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATTTGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACATGCATACATACATTTAATCAATTCAGCCCGCTGGGAGAAAAGAAAGAAGAAGAAAAAAAAATGCAACAGTTTTAGCGCTTCTAAGAATGTAGCTATATATGAACAAAAGAAA
Alignments
lowQualScore : 777777777777777777777 1 1111 1 1 22222222 222 777777777777777777777777777777777777777777777777777777777777777777777777777 1 222 111 111 22222222222 111 1111 111111 1 1111
lowQualScore : 4 222222222222222222222 1 8 3 3 5 0000 0 5 66 55 66 1 6 22222222 333 555555555555555555555555555555555555555555555555555555555555555555555555555 5 3 3 3 44 3 4 222 6 111 111 6 11111111111 77 000 77 7777 5 444444 66 0 888 55 4 4 4 8 5 1 00 2 5 5 5 1 5 1 1 4444 888
lowQualScore : . ..................... . . . . . .... . . .. .. .. . . ........ ... ........................................................................... . . . . .. . . ... . ... ... . ........... .. ... .. .... . ...... .. . ... .. . . . . . . .. . . . . . . . . .... ...
lowQualScore : 0 888888888888888888888 9 9 3 1 0 6666 0 0 99 22 99 4 7 00000000 333 000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 2 55 2 0 888 7 777 333 7 77777777777 99 000 44 9999 7 444444 99 9 888 55 0 0 0 9 0 4 44 8 0 0 0 0 7 4 0 2222 777
consensus : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATTAATTTTG-CAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATATA------G--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
Reference ( family-2976 ) : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGTAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGTACATAAGAAATTGATTTTG-CAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATATA------G--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
gi|1 : AATAGTAACATGCATCAAA-GCACCAGGCCGCTTTA-TGTAATAGCGAACGTAAGAAATT-ATTTTGGCAAACTTCAAGAT-TAGA-ATGAATA-------CGCCTT--A-A---AC-GC-CATG---TTA-CGGTATA------G--TT-A---TCTGAA--AA-GAGAC-GACA-ATGTCACCAAATTGTTG-TAGAAGAAT-ATCTTC-TTTGCTCACTA-TA-TTTTGGCACATCTT-TCAAGAACTA
gi|10 : atataaagggtaagcataataataaaccttgatatagaaaaaaaaaaccccggggataattaacagtattagttgcgagattgtgacactattgtaatgaagtttgtttgaagtattatgcttatgaaattattttttaagatcagctggtttctaccaaacagcaccggacatttagagaccctttcactagaaaaacacacatacatacatcacatgtatcatagagttcaatccaacccgttgaagaaaataaaagagagggaaaaccatagtgcaaaacatactatatAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTAACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---ATTTTGCCAAGTAATGCTACATATATGTATGCAACTGGTTCatatacatgtcttttcgaattctggtcaaatgcaaatagtgtgggtcatcagttaatcttttaatagat
gi|11 : ATGCAAAAAGGAATATATATCAAAAACGTTTAGTGGATTTAATGTAATTATGTTCATAAGAAAT-GATTTTG-CAA---TTAAAGT-C-AT-ATGTATC-------T---TC--AGA---ACTGC-CAT----TTA-AAATATA------G--TTTA---TTTGAA--AA-GGGAC-ACCG-CTGTCGAGcacgcacgcatgcacatacaatatagatcaatccagcccattgacagaacagaaaggagaagatgatgcaaaaag
gi|12 : tcatacataacaatagatcaattcagttcaaggagaatgaactgataggacgaaatgAATACAATGGTCAAGCATAAGAAACCT--TACAGAAAATAT------GACTGAT---A-AC-AGTATT-T-TTTG--ATGTGACAA-TGAAAAT-GG-TTCATACGAG--TTTgtatatc
gi|14 : catagcctatgtaggccccctcccaTG------G--TTCA---TTTGAG--AA-AAGGC-AACA-ATGTCAAGAAATTGCTG-TTGAAGAAT-ATT-TC-CTTGCTGAGTATAT-TTTAGACA----TTCAAAGGAAAgttgaa
gi|15 : AATACAAAGGTCAAGCATAAGAAATA---TACT-AAGATAA------GAGTGATAATA-AATAGTATTAT-TTGGAAATTAGATAGTT----AT-TA-T--AAA-GAG--TTTTAC-ATGAATAacatgtaatgccactttgctt
gi|16 : TTGAA--AA-GGGACCACCG-ATGTCAG--AATCGCTC-TCGAAGTAT-ATC-TCATATG--AAGGA-AA-Tca
gi|17 : AATACAAAGGTCAAGCATAAAAAATATTGTACA-AAGATATGAATGATAATGA----ACAA-AATA-T-T-TTAGGAAaatgtatatttccttcaaa
gi|18 : aTTGAA--AAAGGGAC-ACCGGATGTCA-GAAATCGCTTCTCGAAGTAT-ATC-TC-TAT
gi|19 : AATACAAATGTCAAGCATAAGAAATATTGTACA-AAGATAT------GAAT
gi|2 : AATACAAAGGTCAAGCATAAGAAACCTTATACA-AAAATAT------TATTGAT---A-AC-AGTATCAT-TTGGAAATGTGACAA-T----AT-TATT--ATA--AG--GTTTAC-ATGAACATAGTTAATACTACATGTAGTTTGCTGAATTGTGCTGC
gi|2 : ATATAAGAAA--AATATTG-CAA------AAAT-T-GTCATGTATGAAAGCGCT---TCGAAGATTTAATGTACATGTAGTTATAAGCA-A------GAATTTACAATTCGAATGAA-GGGAC-ACCC-ATGTTACGAAATTGCTG-TGGATAAAT-ATT-TC-TTTGCTGGGTA-CATTTTGGACA----AT-CAAGGAAATAgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaattcgaatgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|3 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaAATACAAAGGTCAAGCATAAGAAGTATTGTACA-AAGATAT------TAATGA----ACAA-AATATT-T-T-AGGAATGCAACAG-T----AT-TG-T--ATA-ATT--TTTTAC-ATGAATAGAATTTA-ATT---------TTGCCTAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATAT-TCAATCCACCCCATGGAAAAAGGAACATATATCAAAAACGCTTAGTGGATTTAATGTAATTATGTACATAAGAAATTAATTTTG-CAA---TTAATCTCC-AT-ATGTA-A-------T---TC--AGA---ACTG--CAT----TTA-AAATATA------G--TTTA---TTAGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCG-AGTATAATC-TC-TATGCTGAGTA-AA-TTTAGAAA----TT-TCGTGAAATATgtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|4 : CAAAAATTAACA-ATATCAAAAGCGCTTAGAAGATTTAATGTAATTATGAACAAAAGAAATT-ATTTTA-CAA---TTAAAAT-T-AT-ATGGGTA-------T---TC--TGA---ACTGT-CAT----TTA-TAATATACATGTAG--TTCA---TTTGGA--AA-GGGCC-ACTA-CTGTCA-GAAATTGCTG-TCGACGTAT-ATC-TC-TTTGCAGAGTA-AA-TTTTGGCA----AT-CCAGGAAATAggcagca
gi|5 : acatcacacacatataatagagatcaatccagcccgttggaaggaaagatcagaaaaaagaaaatagttATTTTG-CAA---TTAAAAT-C-GT-GTGTATA-------T---TT--AGA---ACTGC-CAT----TTA-AGATATA------G--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTatgcaatatttctttcacaatccatggcacaaatgcaaaacagtgtgggtaatcagtcaagtaaatctttcaatatatgagcatctaaattactaagatgtattcgtaaagggcaagaaaacataatatatttt
gi|6 : ATA-------T---GC--AGA---ACTGC-CAT----TTA-AAACATA------G--TTTA---TTTGAA--AA-GGGAC-ACTT-ATGCCAAGAAATTGTTG------------TC-TC-TATGCTGAGTA-AATTTTGGACA----TT-GAAGGAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatgcatatttcattcgaatttatggccacagtgcaaacggtgtgggtcatcagtcaagtaccggtaatttttcaataaatgagcatttaaattacttgctttatttcgtaattaacagagaataatattttcttttctattgccaaaattatctagtactttatgactttcggaat
gi|7 : tatgaacagaaatggtcggattactttaaaAATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATATCAATGATAATGA----ACAA-AATA-T-T-TTAGGAATGCAACAG-C----AT-TG-T--ATT-AAACTTTTTAC-ATGAACAGAATTGA-AT---------TTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTtaaatgcatttttccttcaaattcatgaccacaatgcaaacagtgtgggtcatcagtcaagtaatctttcaataaatgagcatttttaaaaattacttggcaatgctttattttgcaattgatagaaaacaatattttcttttctattgccaacattaaagtgctttttgactttcggaat
gi|7 : aACTATATATCAATCCACCCCATGcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataactatatatcaatccaccccatg
gi|8 : aaatacaaaggtcaagcataagaaatattgtacaaagatatcaatgataatgaacaaaatattttaggaatgcaacagcattgtattaaactttttacatgaacagaattgaattttgccaagtaatgctacatgtatggtaactggttcttcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACAT
gi|9 : aaaatcacaaaaccgtttgagtaaaatggattatttacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACATGCATACATACATTTAATCAATTCAGCCCGCTGGGAGAAAAGAAAGAAGAAGAAAAAAAAATGCAACAGTTTTAGCGCTTCTAAGAATGTAGCTATATATGAACAAAAGAAA
Alignments
lowQualScore : 777777777777777777777 1 1111 1 1 22222222 222 777777777777777777777777777777777777777777777777777777777777777777777777777 1 111 111 111 22222222222 111 1111 111111 1 1111
lowQualScore : 4 222222222222222222222 1 8 3 3 5 0000 0 5 66 55 66 1 6 22222222 333 555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 3 3 44 3 1 000 111 111 6 11111111111 77 000 77 7777 5 444444 66 0 888 55 4 4 4 3 5 1 00 2 5 5 5 1 5 1 1 4444 888
lowQualScore : . ..................... . . . . . .... . . .. .. .. . . ........ ... ........................................................................... . . . . .. . . ... ... ... . ........... .. ... .. .... . ...... .. . ... .. . . . . . . .. . . . . . . . . .... ...
lowQualScore : 0 888888888888888888888 9 9 3 1 0 6666 0 0 99 22 99 4 7 00000000 333 000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 2 55 2 0 222 777 333 7 77777777777 99 000 44 9999 7 444444 99 9 888 55 0 0 0 4 0 4 44 8 0 0 0 0 7 4 0 2222 777
consensus : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATTAATTTTGCAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
Reference ( family-2976 ) : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATTAATTTTGCAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
gi|1 : AATAGTAACATGCATCAAA-GCACCAGGCCGCTTTA-TGTAATAGCGAACGTAAGAAATTATTTTGGCAAACTTCAAGAT-TAGA-ATGAATA-------CGCCTT--A-A---AC-GC-CATG---TTA-CGGTA------TAG--TT-A---TCTGAA--AA-GAGAC-GACA-ATGTCACCAAATTGTTG-TAGAAGAAT-ATCTTC-TTTGCTCACTA-TA-TTTTGGCACATCTT-TCAAGAACTA
gi|10 : atataaagggtaagcataataataaaccttgatatagaaaaaaaaaaccccggggataattaacagtattagttgcgagattgtgacactattgtaatgaagtttgtttgaagtattatgcttatgaaattattttttaagatcagctggtttctaccaaacagcaccggacatttagagaccctttcactagaaaaacacacatacatacatcacatgtatcatagagttcaatccaacccgttgaagaaaataaaagagagggaaaaccatagtgcaaaacatactatatAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTAACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---ATTTTGCCAAGTAATGCTACATATATGTATGCAACTGGTTCatatacatgtcttttcgaattctggtcaaatgcaaatagtgtgggtcatcagttaatcttttaatagat
gi|11 : ATGCAAAAAGGAATATATATCAAAAACGTTTAGTGGATTTAATGTAATTATGTTCATAAGAAAT-GATTTTGCAA---TTAAAGT-C-AT-ATGTATC-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-CTGTCGAGcacgcacgcatgcacatacaatatagatcaatccagcccattgacagaacagaaaggagaagatgatgcaaaaag
gi|12 : tcatacataacaatagatcaattcagttcaaggagaatgaactgataggacgaaatgAATACAATGGTCAAGCATAAGAAACCT--TACAGAAAATAT------GACTGAT---A-AC-AGTATT-T-TTTG--ATGTGACAA-TGAAAAT-GG-TTCATACGAG--TTTgtatatc
gi|14 : catagcctatgtaggccccctccca------TGG--TTCA---TTTGAG--AA-AAGGC-AACA-ATGTCAAGAAATTGCTG-TTGAAGAAT-ATT-TC-CTTGCTGAGTATAT-TTTAGACA----TTCAAAGGAAAgttgaa
gi|15 : AATACAAAGGTCAAGCATAAGAAATA---TACT-AAGATAA------GAGTGATAATA-AATAGTATTAT-TTGGAAATTAGATAGTT----AT-TA-T--AAA-GAG--TTTTAC-ATGAATAacatgtaatgccactttgctt
gi|16 : TTGAA--AA-GGGACCACCG-ATGTCAG--AATCGCTC-TCGAAGTAT-ATC-TCATATG--AAGGA-AA-Tca
gi|17 : AATACAAAGGTCAAGCATAAAAAATATTGTACA-AAGATATGAATGATAATGA----ACAA-AATA-T-T-TTAGGAAaatgtatatttccttcaaa
gi|18 : aTTGAA--AAAGGGAC-ACCGGATGTCA-GAAATCGCTTCTCGAAGTAT-ATC-TC-TAT
gi|19 : AATACAAATGTCAAGCATAAGAAATATTGTACA-AAGATAT------GAAT
gi|2 : AATACAAAGGTCAAGCATAAGAAACCTTATACA-AAAATAT------TATTGAT---A-AC-AGTATCAT-TTGGAAATGTGACAA-T----AT-TATT--ATA--AG--GTTTAC-ATGAACATAGTTAATACTACATGTAGTTTGCTGAATTGTGCTGC
gi|2 : ATATAAGAAA--AATATTGCAA------AAAT-T-GTCATGTATGAAAGCGCT---TCGAAGATTTAATGTACATGTAGTTATAAGCA-------AGAATTTACAATTCGAATGAA-GGGAC-ACCC-ATGTTACGAAATTGCTG-TGGATAAAT-ATT-TC-TTTGCTGGGTA-CATTTTGGACA----AT-CAAGGAAATAgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaattcgaatgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|3 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaAATACAAAGGTCAAGCATAAGAAGTATTGTACA-AAGATAT------TAATGA----ACAA-AATATT-T-T-AGGAATGCAACAG-T----AT-TG-T--ATA-ATT--TTTTAC-ATGAATAGAATTTA-ATT---------TTGCCTAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATAT-TCAATCCACCCCATGGAAAAAGGAACATATATCAAAAACGCTTAGTGGATTTAATGTAATTATGTACATAAGAAATTAATTTTGCAA---TTAATCTCC-AT-ATGTA-A-------T---TC--AGA---ACTG--CAT----TTA-AAATA------TAG--TTTA---TTAGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCG-AGTATAATC-TC-TATGCTGAGTA-AA-TTTAGAAA----TT-TCGTGAAATATgtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|4 : CAAAAATTAACA-ATATCAAAAGCGCTTAGAAGATTTAATGTAATTATGAACAAAAGAAATT-ATTTTACAA---TTAAAAT-T-AT-ATGGGTA-------T---TC--TGA---ACTGT-CAT----TTA-TAATATACATGTAG--TTCA---TTTGGA--AA-GGGCC-ACTA-CTGTC-AGAAATTGCTG-TCGACGTAT-ATC-TC-TTTGCAGAGTA-AA-TTTTGGCA----AT-CCAGGAAATAggcagca
gi|5 : acatcacacacatataatagagatcaatccagcccgttggaaggaaagatcagaaaaaagaaaatagttATTTTGCAA---TTAAAAT-C-GT-GTGTATA-------T---TT--AGA---ACTGC-CAT----TTA-AGATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTatgcaatatttctttcacaatccatggcacaaatgcaaaacagtgtgggtaatcagtcaagtaaatctttcaatatatgagcatctaaattactaagatgtattcgtaaagggcaagaaaacataatatatttt
gi|6 : ATA-------T---GC--AGA---ACTGC-CAT----TTA-AAACA------TAG--TTTA---TTTGAA--AA-GGGAC-ACTT-ATGCCAAGAAATTGTTG------------TC-TC-TATGCTGAGTA-AATTTTGGACA----TT-GAAGGAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatgcatatttcattcgaatttatggccacagtgcaaacggtgtgggtcatcagtcaagtaccggtaatttttcaataaatgagcatttaaattacttgctttatttcgtaattaacagagaataatattttcttttctattgccaaaattatctagtactttatgactttcggaat
gi|7 : tatgaacagaaatggtcggattactttaaaAATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATATCAATGATAATGA----ACAA-AATA-T-T-TTAGGAATGCAACAG-C----AT-TG-T--ATT-AAACTTTTTAC-ATGAACAGAATTGA-AT---------TTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTtaaatgcatttttccttcaaattcatgaccacaatgcaaacagtgtgggtcatcagtcaagtaatctttcaataaatgagcatttttaaaaattacttggcaatgctttattttgcaattgatagaaaacaatattttcttttctattgccaacattaaagtgctttttgactttcggaat
gi|7 : aACTATATATCAATCCACCCCATGcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataactatatatcaatccaccccatg
gi|8 : aaatacaaaggtcaagcataagaaatattgtacaaagatatcaatgataatgaacaaaatattttaggaatgcaacagcattgtattaaactttttacatgaacagaattgaattttgccaagtaatgctacatgtatggtaactggttcttcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACAT
gi|9 : aaaatcacaaaaccgtttgagtaaaatggattatttacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACATGCATACATACATTTAATCAATTCAGCCCGCTGGGAGAAAAGAAAGAAGAAGAAAAAAAAATGCAACAGTTTTAGCGCTTCTAAGAATGTAGCTATATATGAACAAAAGAAA
Alignments
lowQualScore : 777777777777777777777 1 1111 1 1 22222222 222 777777777777777777777777777777777777777777777777777777777777777777777777777 1 111 111 111 22222222222 111 1111 111111 1 1111
lowQualScore : 4 222222222222222222222 1 8 3 3 5 0000 0 5 66 55 66 1 6 22222222 333 555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 3 3 44 3 1 000 111 111 6 11111111111 77 000 77 7777 5 444444 66 0 888 55 4 4 4 3 5 1 00 2 5 5 5 1 5 1 1 4444 888
lowQualScore : . ..................... . . . . . .... . . .. .. .. . . ........ ... ........................................................................... . . . . .. . . ... ... ... . ........... .. ... .. .... . ...... .. . ... .. . . . . . . .. . . . . . . . . .... ...
lowQualScore : 0 888888888888888888888 9 9 3 1 0 6666 0 0 99 22 99 4 7 00000000 333 000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 2 55 2 0 222 777 333 7 77777777777 99 000 44 9999 7 444444 99 9 888 55 0 0 0 4 0 4 44 8 0 0 0 0 7 4 0 2222 777
consensus : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATTAATTTTGCAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
Reference ( family-2976 ) : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATTAATTTTGCAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
gi|1 : AATAGTAACATGCATCAAA-GCACCAGGCCGCTTTA-TGTAATAGCGAACGTAAGAAATTATTTTGGCAAACTTCAAGAT-TAGA-ATGAATA-------CGCCTT--A-A---AC-GC-CATG---TTA-CGGTA------TAG--TT-A---TCTGAA--AA-GAGAC-GACA-ATGTCACCAAATTGTTG-TAGAAGAAT-ATCTTC-TTTGCTCACTA-TA-TTTTGGCACATCTT-TCAAGAACTA
gi|10 : atataaagggtaagcataataataaaccttgatatagaaaaaaaaaaccccggggataattaacagtattagttgcgagattgtgacactattgtaatgaagtttgtttgaagtattatgcttatgaaattattttttaagatcagctggtttctaccaaacagcaccggacatttagagaccctttcactagaaaaacacacatacatacatcacatgtatcatagagttcaatccaacccgttgaagaaaataaaagagagggaaaaccatagtgcaaaacatactatatAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTAACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---ATTTTGCCAAGTAATGCTACATATATGTATGCAACTGGTTCatatacatgtcttttcgaattctggtcaaatgcaaatagtgtgggtcatcagttaatcttttaatagat
gi|11 : ATGCAAAAAGGAATATATATCAAAAACGTTTAGTGGATTTAATGTAATTATGTTCATAAGAAAT-GATTTTGCAA---TTAAAGT-C-AT-ATGTATC-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-CTGTCGAGcacgcacgcatgcacatacaatatagatcaatccagcccattgacagaacagaaaggagaagatgatgcaaaaag
gi|12 : tcatacataacaatagatcaattcagttcaaggagaatgaactgataggacgaaatgAATACAATGGTCAAGCATAAGAAACCT--TACAGAAAATAT------GACTGAT---A-AC-AGTATT-T-TTTG--ATGTGACAA-TGAAAAT-GG-TTCATACGAG--TTTgtatatc
gi|14 : catagcctatgtaggccccctccca------TGG--TTCA---TTTGAG--AA-AAGGC-AACA-ATGTCAAGAAATTGCTG-TTGAAGAAT-ATT-TC-CTTGCTGAGTATAT-TTTAGACA----TTCAAAGGAAAgttgaa
gi|15 : AATACAAAGGTCAAGCATAAGAAATA---TACT-AAGATAA------GAGTGATAATA-AATAGTATTAT-TTGGAAATTAGATAGTT----AT-TA-T--AAA-GAG--TTTTAC-ATGAATAacatgtaatgccactttgctt
gi|16 : TTGAA--AA-GGGACCACCG-ATGTCAG--AATCGCTC-TCGAAGTAT-ATC-TCATATG--AAGGA-AA-Tca
gi|17 : AATACAAAGGTCAAGCATAAAAAATATTGTACA-AAGATATGAATGATAATGA----ACAA-AATA-T-T-TTAGGAAaatgtatatttccttcaaa
gi|18 : aTTGAA--AAAGGGAC-ACCGGATGTCA-GAAATCGCTTCTCGAAGTAT-ATC-TC-TAT
gi|19 : AATACAAATGTCAAGCATAAGAAATATTGTACA-AAGATAT------GAAT
gi|2 : AATACAAAGGTCAAGCATAAGAAACCTTATACA-AAAATAT------TATTGAT---A-AC-AGTATCAT-TTGGAAATGTGACAA-T----AT-TATT--ATA--AG--GTTTAC-ATGAACATAGTTAATACTACATGTAGTTTGCTGAATTGTGCTGC
gi|2 : ATATAAGAAA--AATATTGCAA------AAAT-T-GTCATGTATGAAAGCGCT---TCGAAGATTTAATGTACATGTAGTTATAAGCA-------AGAATTTACAATTCGAATGAA-GGGAC-ACCC-ATGTTACGAAATTGCTG-TGGATAAAT-ATT-TC-TTTGCTGGGTA-CATTTTGGACA----AT-CAAGGAAATAgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaattcgaatgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|3 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaAATACAAAGGTCAAGCATAAGAAGTATTGTACA-AAGATAT------TAATGA----ACAA-AATATT-T-T-AGGAATGCAACAG-T----AT-TG-T--ATA-ATT--TTTTAC-ATGAATAGAATTTA-ATT---------TTGCCTAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATAT-TCAATCCACCCCATGGAAAAAGGAACATATATCAAAAACGCTTAGTGGATTTAATGTAATTATGTACATAAGAAATTAATTTTGCAA---TTAATCTCC-AT-ATGTA-A-------T---TC--AGA---ACTG--CAT----TTA-AAATA------TAG--TTTA---TTAGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCG-AGTATAATC-TC-TATGCTGAGTA-AA-TTTAGAAA----TT-TCGTGAAATATgtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|4 : CAAAAATTAACA-ATATCAAAAGCGCTTAGAAGATTTAATGTAATTATGAACAAAAGAAATT-ATTTTACAA---TTAAAAT-T-AT-ATGGGTA-------T---TC--TGA---ACTGT-CAT----TTA-TAATATACATGTAG--TTCA---TTTGGA--AA-GGGCC-ACTA-CTGTC-AGAAATTGCTG-TCGACGTAT-ATC-TC-TTTGCAGAGTA-AA-TTTTGGCA----AT-CCAGGAAATAggcagca
gi|5 : acatcacacacatataatagagatcaatccagcccgttggaaggaaagatcagaaaaaagaaaatagttATTTTGCAA---TTAAAAT-C-GT-GTGTATA-------T---TT--AGA---ACTGC-CAT----TTA-AGATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTatgcaatatttctttcacaatccatggcacaaatgcaaaacagtgtgggtaatcagtcaagtaaatctttcaatatatgagcatctaaattactaagatgtattcgtaaagggcaagaaaacataatatatttt
gi|6 : ATA-------T---GC--AGA---ACTGC-CAT----TTA-AAACA------TAG--TTTA---TTTGAA--AA-GGGAC-ACTT-ATGCCAAGAAATTGTTG------------TC-TC-TATGCTGAGTA-AATTTTGGACA----TT-GAAGGAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatgcatatttcattcgaatttatggccacagtgcaaacggtgtgggtcatcagtcaagtaccggtaatttttcaataaatgagcatttaaattacttgctttatttcgtaattaacagagaataatattttcttttctattgccaaaattatctagtactttatgactttcggaat
gi|7 : tatgaacagaaatggtcggattactttaaaAATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATATCAATGATAATGA----ACAA-AATA-T-T-TTAGGAATGCAACAG-C----AT-TG-T--ATT-AAACTTTTTAC-ATGAACAGAATTGA-AT---------TTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTtaaatgcatttttccttcaaattcatgaccacaatgcaaacagtgtgggtcatcagtcaagtaatctttcaataaatgagcatttttaaaaattacttggcaatgctttattttgcaattgatagaaaacaatattttcttttctattgccaacattaaagtgctttttgactttcggaat
gi|7 : aACTATATATCAATCCACCCCATGcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataactatatatcaatccaccccatg
gi|8 : aaatacaaaggtcaagcataagaaatattgtacaaagatatcaatgataatgaacaaaatattttaggaatgcaacagcattgtattaaactttttacatgaacagaattgaattttgccaagtaatgctacatgtatggtaactggttcttcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACAT
gi|9 : aaaatcacaaaaccgtttgagtaaaatggattatttacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATATAAAGGTCAAGCTTAAGAAATATTGTACA-AAGATAT---------------------AATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATaca
blockSeqs : G GAATGATAATGAACAA T A G T T GAAA A T TC CG CT G T ACATGTAG . A G T A TG A T TTA . CC C AAAGCGCT GA TTT TA GTAG T TACATG AA CAA TG A C G A C T A A . A T T T A . CAA
blockSeqs : . CAATGATAATGAACAA T A G A . . A . . G . G . AAAG . G T A TG A T TG . C . T . . C . . . . . . . . . A . C T . . . A . T G . CA
blockSeqs : . GAGTGATAATAAAT T . . T . . . . . A . . . AAAG T . A AA A A TT . T . T . . T . . . . . . . . . G . C T . . . A . . A . TC
blockSeqs : . GACTGATAAC T . . C . . . . . A . . . . A . T . T . . C . . . . . . . . . C . G A . . . T . . T . CC
blockSeqs : . TATTGATAAC T . . C . . . . . G . . . . . C . T . . C . . . . . . . . . A . C T . . . A . . G . GA
blockSeqs : . TAATGAACAA T . . T . . . . . G . . T . . . . . . . . . . . . A . C T . . . T . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . A . . . . . . A
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ATGATAATAA*********** AAAG**** TG* *** C** T********** **** ****
originalCons : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATAT------TAATGA----A-AA-AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATTAATTTTGCAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
finalCons : AATACAAAGGTCAAGCATAAGAAATATTGTACA-AAGATATATGATAATAA-----------AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTAAAG----TTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAATG-ATTTTGCAA---TTAAAATC--GT-ATGTATAT----------TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACATGCATACATACATTTAATCAATTCAGCCCGCTGGGAGAAAAGAAAGAAGAAGAAAAAAAAATGCAACAGTTTTAGCGCTTCTAAGAATGTAGCTATATATGAACAAAAGAAA
Alignments
lowQualScore : 77777777777777777777777 1 1111 1 1 22222222 222 777777777777777777777777777777777777777777777777777777777777777777777777777 1 111 111 111111 222222222222222 111 1111 111111 1 1111
lowQualScore : 4 11111111111111111111111 8 3 1 3 5 0000 0 5 66 55 66 1 6 66666666 333 555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 3 3 44 3 1 1 999 000 5 000 222222 888888888888888 77 000 77 7777 5 444444 66 0 888 55 4 4 4 3 5 1 00 2 5 5 5 1 5 1 1 4444 888
lowQualScore : . ....................... . . . . . .... . . .. .. .. . . ........ ... ........................................................................... . . . . .. . . . ... ... . ... ...... ............... .. ... .. .... . ...... .. . ... .. . . . . . . .. . . . . . . . . .... ...
lowQualScore : 0 66666666666666666666666 9 3 9 1 0 6666 0 0 99 22 99 4 7 22222222 333 000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 2 2 55 2 0 7 555 000 7 000 777777 333333333333333 99 000 44 9999 7 444444 99 9 888 55 0 0 0 4 0 4 44 8 0 0 0 0 7 4 0 2222 777
consensus : AATACAAAGGTCAAGCATAAGAAATATTGTACAAAGATA-T--A---TGA-T-AAT----AA--AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGAACATAAGAAA-TNATT---TTG-CAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
Reference ( family-2976 ) : AATACAAAGGTCAAGCATAAGAAATATTGTACAAAGATA-T--A---TGA-T-AAT----AA--AATATT-T-TTGGGAATGCGACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATATATCAATCCACCCCATGCAAAAAGNAACATATATCAAAAGCGCTTAGCGGATTTAATGTAATTATGNACATAAGAAA-TGATT---TTG-CAA---TTAAAAT-C-GT-ATGTATA-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCGAAGNAT-ATC-TC-TNTGCTGAGTA-AA-TTTNGACA----TT-NNAGGAAATAT
gi|1 : AATAGTAACATGCATCAAA-GCACCAGGCCGCTTTA-TGTAATAGCGAACGTAAGAAA-TTATT---TTGGCAAACTTCAAGAT-TAGA-ATGAATA-------CGCCTT--A-A---AC-GC-CATG---TTA-CGGTA------TAG--TT-A---TCTGAA--AA-GAGAC-GACA-ATGTCACCAAATTGTTG-TAGAAGAAT-ATCTTC-TTTGCTCACTA-TA-TTTTGGCACATCTT-TCAAGAACTA
gi|10 : atataaagggtaagcataataataaaccttgatatagaaaaaaaaaaccccggggataattaacagtattagttgcgagattgtgacactattgtaatgaagtttgtttgaagtattatgcttatgaaattattttttaagatcagctggtttctaccaaacagcaccggacatttagagaccctttcactagaaaaacacacatacatacatcacatgtatcatagagttcaatccaacccgttgaagaaaataaaagagagggaaaaccatagtgcaaaacatactatatAATATAAAGGTCAAGCTTAAGAAATATTGTACAAAGATA-T--A---------------------ATATT-TGTTGAGAATGTAACAG-T----AT-TG-T--ATA-GAG--TTTTAC-ATGAATAGAGTTAA-ATTA-A---ATTTTGCCAAGTAATGCTACATATATGTATGCAACTGGTTCatatacatgtcttttcgaattctggtcaaatgcaaatagtgtgggtcatcagttaatcttttaatagat
gi|11 : ATGCAAAAAGGAATATATATCAAAAACGTTTAGTGGATTTAATGTAATTATGTTCATAAGAAA-TGATT---TTG-CAA---TTAAAGT-C-AT-ATGTATC-------T---TC--AGA---ACTGC-CAT----TTA-AAATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-CTGTCGAGcacgcacgcatgcacatacaatatagatcaatccagcccattgacagaacagaaaggagaagatgatgcaaaaag
gi|12 : tcatacataacaatagatcaattcagttcaaggagaatgaactgataggacgaaatgAATACAATGGTCAAGCATAAGAAACCT--TACAGAAA-A-T--A---TGACT-GAT----AAC-AGTATT-T-TTTG--ATGTGACAA-TGAAAAT-GG-TTCATACGAG--TTTgtatatc
gi|14 : catagcctatgtaggccccctccca------TGG--TTCA---TTTGAG--AA-AAGGC-AACA-ATGTCAAGAAATTGCTG-TTGAAGAAT-ATT-TC-CTTGCTGAGTATAT-TTTAGACA----TTCAAAGGAAAgttgaa
gi|15 : AATACAAAGGTCAAGCATAAGAAATA---TACTAAGATA----AGAGTGA-T-AAT----AAATAGTATTAT-TTGGAAATTAGATAGTT----AT-TA-T--AAA-GAG--TTTTAC-ATGAATAacatgtaatgccactttgctt
gi|16 : TTGAA--AA-GGGACCACCG-ATGTCAG--AATCGCTC-TCGAAGTAT-ATC-TCATATG--AAGGA-AA-Tca
gi|17 : AATACAAAGGTCAAGCATAAAAAATATTGTACAAAGATA-TGAA---TGA-T-AATGAACAA--AATA-T-T-TTAGGAAaatgtatatttccttcaaa
gi|18 : aTTGAA--AAAGGGAC-ACCGGATGTCA-GAAATCGCTTCTCGAAGTAT-ATC-TC-TAT
gi|19 : AATACAAATGTCAAGCATAAGAAATATTGTACAAAGATA-T--
gi|2 : AATACAAAGGTCAAGCATAAGAAACCTTATACAAAAATATT--AT--TGA-T-AAC--------AGTATCAT-TTGGAAATGTGACAA-T----AT-TATT--ATA--AG--GTTTAC-ATGAACATAGTTAATACTACATGTAGTTTGCTGAATTGTGCTGCgaat
gi|2 : ATATAAGAAA--AATA---TTG-CAA------AAAT-T-GTCATGTATGAAAGCGCT---TCGAAGATTTAATGTACATGTAGTTATAAGCA-------AGAATTTACAATTCGAATGAA-GGGAC-ACCC-ATGTTACGAAATTGCTG-TGGATAAAT-ATT-TC-TTTGCTGGGTA-CATTTTGGACA----AT-CAAGGAAATAgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaatataagaaaaatattgcaaaaattgtcatgtatgaaagcgcttcgaagatttaatgtacatgtagttataagcaagaatttacaattcgaatgaagggacacccatgttacgaaattgctgtggataaatatttctttgctgggtacattttggacaatcaaggaaatagtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|3 : aatacaaaggtcaagcataagaaaccttatacaaaaatattattgataacagtatcatttggaaatgtgacaatattattataaggtttacatgaacatagttaatactacatgtagtttgctgaattgtgctgcgagatgattttcatagatcacacgcgtattcacaacatgcatacaatatagatcagttaattcaggccgttggaagaaaAATACAAAGGTCAAGCATAAGAAGTATTGTACAAAGATA-T------TAA-TGAAC----AA--AATATT-T-T-AGGAATGCAACAG-T----AT-TG-T--ATA-ATT--TTTTAC-ATGAATAGAATTTA-ATT---------TTGCCTAGTAATGCTACATGTATG---GTAACTGGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATAT-TCAATCCACCCCATGGAAAAAGGAACATATATCAAAAACGCTTAGTGGATTTAATGTAATTATGTACATAAGAAATTAATT---TTG-CAA---TTAATCTCC-AT-ATGTA-A-------T---TC--AGA---ACTG--CAT----TTA-AAATA------TAG--TTTA---TTAGAA--AA-GGGAC-ACCG-ATGTCAAGAAATTGCTG-TCG-AGTATAATC-TC-TATGCTGAGTA-AA-TTTAGAAA----TT-TCGTGAAATATgtgcacaattccatagccacaacacaaacagtgtgggccaccaataaaataatctctcaataaatgagcattcgaattactggcttgattccgta
gi|4 : CAAAAATTAACA-ATATCAAAAGCGCTTAGAAGATTTAATGTAATTATGAACAAAAGAAA-TTATT---TTA-CAA---TTAAAAT-T-AT-ATGGGTA-------T---TC--TGA---ACTGT-CAT----TTA-TAATATACATGTAG--TTCA---TTTGGA--AA-GGGCC-ACTA-CTGTC-AGAAATTGCTG-TCGACGTAT-ATC-TC-TTTGCAGAGTA-AA-TTTTGGCA----AT-CCAGGAAATAggcagca
gi|5 : acatcacacacatataatagagatcaatccagcccgttggaaggaaagatcagaaaaaagaaaatagttATT---TTG-CAA---TTAAAAT-C-GT-GTGTATA-------T---TT--AGA---ACTGC-CAT----TTA-AGATA------TAG--TTTA---TTTGAA--AA-GGGAC-ACCG-ATGTatgcaatatttctttcacaatccatggcacaaatgcaaaacagtgtgggtaatcagtcaagtaaatctttcaatatatgagcatctaaattactaagatgtattcgtaaagggcaagaaaacataatatatttt
gi|6 : TATGAAC---AGAAA-TGGTCGGATTA-C-T---TTAAAA-----T-ATG----------------C--AGA---ACTGC-CAT----TTA-AAACA------TAG--TTTA---TTTGAA--AA-GGGAC-ACTT-ATGCCAAGAAATTGTTG------------TC-TC-TATGCTGAGTA-AATTTTGGACA----TT-GAAGGAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataatgcatatttcattcgaatttatggccacagtgcaaacggtgtgggtcatcagtcaagtaccggtaatttttcaataaatgagcatttaaattacttgctttatttcgtaattaacagagaataatattttcttttctattgccaaaattatctagtactttatgactttcggaat
gi|7 : AATACAAAGGTCAAGCATAAGAAATATTGTACAAAGATA-TCAA---TGA-T-AATGAACAA--AATATT-T-T-AGGAATGCAACAG-C----AT-TG-T--ATT-AAACTTTTTAC-ATGAACAGAATTGA-ATT---------TTGCCAAGTAATGCTACATGTATG---GTAACTGGTTCTTtaaatgcatttttccttcaaattcatgaccacaatgcaaacagtgtgggtcatcagtcaagtaatctttcaataaatgagcatttttaaaaattacttggcaatgctttattttgcaattgatagaaaacaatattttcttttctattgccaacattaaagtgctttttgactttcggaat
gi|7 : aACTATATATCAATCCACCCCATGcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataactatatatcaatccaccccatg
gi|8 : aaatacaaaggtcaagcataagaaatattgtacaaagatatcaatgataatgaacaaaatattttaggaatgcaacagcattgtattaaactttttacatgaacagaattgaattttgccaagtaatgctacatgtatggtaactggttcttcaccctcatcacacacaccacacagcacacacacaacaacacacatgcacaaccccacctacattcatacaactgtatacatacattcataAATATAAAGGTCAAGCTTAAGAAATATTGTACAAAGATA-T--A---------------------ATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACAT
gi|9 : aaaatcacaaaaccgtttgagtaaaatggattatttacttgtaatttaaacatattttatggattgggcagcagacatagctcataaagccccccccaAATATAAAGGTCAAGCTTAAGAAATATTGTACAAAGATA-T--A---------------------ATATT-TGTTGAGAATGTGACAG-T----ATATG-T--ATA-GAG--TTTTACGATGAATAGAGTTAA-ATTA-A---AGTTTGCCAAGTAATGCTACATaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCACATGCATACATACATTTAATCAATTCAGCCCGCTGGGAGAAAAGAAAGAAGAAGAAAAAAAAATGCAACAGTTTTAGCGCTTCTAAGAATGTAGCTATATATGAACAAAAGAAA