lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555555 11 1 555555 11 33333333 111 111 1 11 22222222 22222 1 33333 11111 11111111111111111111111111111111 1111111 222 11 222 11 111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222 11 11 222222222 111 222 1 11111 44444444444 44444444 1
lowQualScore : 6 6 6 888888 22 5 777777 2 8 7 6 9 55 5 1 00000000 6 4444 444 5 000 5 6 0 6 00 7 5 11111111 00000 2 77 77 22222 99999 4 0 55555555555555555555555555555555 6666666 222 33 0 5 1 9 555 11 444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 0 8 99 9 8 11 444 8 3 444444444 6 333 222 0 33333 0 3 7 2 1 22222222222 3 88888888 3 6 6 6
lowQualScore : . . . ...... .. . ...... . . . . . .. . . ........ . .... ... . ... . . . . .. . . ........ ..... . .. .. ..... ..... . . ................................ ....... ... .. . . . . ... .. ...... ............................................................................... . . . .. . . .. ... . . ......... . ... ... . ..... . . . . . ........... . ........ . . . .
lowQualScore : 0 0 0 000000 00 0 555555 5 0 8 7 5 88 3 0 00000000 7 5555 000 3 000 7 3 8 0 22 8 2 88888888 33333 6 44 99 11111 77777 4 7 88888888888888888888888888888888 2222222 999 22 2 0 4 2 666 44 000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000 2 8 0 00 0 0 00 888 0 2 888888888 5 555 000 0 88888 8 5 0 5 0 33333333333 7 33333333 3 0 0 0
consensus : CACAATCTTAAGTCGGAAGTCCCGAGATACAGGCATNTCCCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGATACAAGGACACCG---G-ATTCAAGAACTATGA-CATTTCATTCGGAGCG----AC-AACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTTGAA---TATANAGAAT-TAAATTCA-ATATA-----TAAACATT---TGTA-ACA-AAACC-------AAAACAC-GAGGATTC-AAATAAATCC-AGAGAATTCG-TTGACAAAT-GGAAAC----CAT---G-----ATGC----ACTA--TGA-----TAC----TTA-----TAT-----A-----AGTA-TAT-ATATCTATATATACAAA-AAGT--AGAAGAAACAATACACCG-AAAAT--CACCATTCTGTT-TCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGACGACCAATAGAAACTAATT-TATNTGCGATTTCGTTACA--------GCTA-TTGTTTAGGGAACCTGC
Reference ( gi|3 ) : CATAACCTTGAAACG--AGCTCCCAGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATGA-TATTTCATTCGAAGCG----AT-GACCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG-----TATAAAGGGT-TAAATCCAAATATA-----TAAACATT-TGTGTA-ACA-GAACC-------AAAACA--AAGGATTC-AAATAAATCC-AGATAATTCG-CCGACAAAT-GGAAGC----CAT---G-----ATAC----ACTA--TGA-----TAC----TTA-----TAT-----A-----AATA-TAT-ATATATACACACACAAA-AAGT--AGAAGGAACAATACACTG-AAAAT--CATTATTCTGCT-TCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGC
gi|1 : CACAATCTTAAGTCGGAAGTCCCGAGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATGA-CATTTCATGCGGAGCG----AC-AAC------------TTGGCAT-ACT-CT--TGAGGTTG-----AATAA----------TCCATATGCAGTTGGTTAACATT-ATTGTA-----GAACC-------AAAATA--GACGATTC-AAATTAATAC-A-----TTCG-C-----AAT-TGAAAT----CAT---GGCATTATGCGTGTACTA--TTT-----TAC----TGT-----TAT-----AGTTGCAGTACTAT-ATACCTATAGATGCAAA-AAGT--AGAAGAGAAAATACACTG-AAAAT--TACCATTCTATT-TCTAAC-AATAAGT-TATGACA---AGTGT-TCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|4 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatAGATA------TCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATGA-TA-TTCATTCGAAGCG----AT-GACCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG-----TATAAAGGGT-TAAATCCAAATATA-----TAAACA-T-TGTTTA-A-A-GAA-C-------AAAAC---AAGGATTC--AATAAATCCAAGATAATTCG-CCGACAAAT-GGAAGC----CAT---GA----ATAA----TCTC--TGA-----TAC----TTA-----TAT-----A-----AAT--TAT-AT-TTTACA-ACAC-AA-AAGTA-AGAAGG-ACAATACACTG-CAAAT--C-TAATTCTGCT-T-TAGT-CATGGATGTATGACAAC-AGTGT-T-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : CTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTC-AAGCG----ACCAATCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTGAAATATATAAA---T-TAAATTCA----TA-----TAA--------TGTA--CATAAACC-------AAAACACGGAGGATTCCAAATAAATCC-AGAGAATTCATTTGACAAATGGGAAAT----CAT---G-----
gi|16 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgggaaattccccagtaaccgtcaataaCTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAggcatttagggtacactgatatgcgggtatcatgttactgctatcaattttgcaattctaata
gi|2 : TAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTGA-CATTTTATTCAGAGCG----AC-AATCTGAC-ATTCA-TTGGTATGACT-CT--TGAGATTGAAA--TATATAGAATATAAATTCA--TATA-----CA---------TGTC-ATA--AACC-------AAAACAC-GAGGATTC-AAATAAATCC-AGAGAATTCA-TTGACAAAT-G--AAT----CAT---G-------GC----ATTATTTGG-----TAC----gacttgaattc
gi|10 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaaatcttgaggtgggaaattcccagtaaccgtcaactaaaaA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATAC-CATGTTATTCGAAGCG----AC-AACCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-----AATATAGAAT-GAAATTCATATactgatatgcgagtatcatgttatgcttatcattgcaattctataaatgtgatttc
gi|8 : tagaattatttacagatAGGATATAAGGACAC-GCTTG-ATACAAGAACTATGA-CATT--ATTTTGGGCGGACCAT--ACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTCA-----TAT--ATGAT-TAAATT----TATA-----TCAA---------TA-ATA-AAACCAATTTTGAAAGCA--GA-TATTC-AAATAATGCG-AAATCATT-G---AACAAAT--GAAGC----tt
gi|14 : atatacTTCATTTGGTATGACT-CT--TGAGGTTGAA---TATATATAAT-TAAATTC--ATAT------T--ACAT-------------AAACC-------AAAATA--GAGGATTC----------------AATTCA-TTGACAAAT-GGAAaaggcaatttnnnnnnnnnnnnnnnnnnnnnnnnnatggtacactgatatgctatttccatgttactgcttatcattgcaattccaacacgcg
gi|6 : gacaGT-GAAATCCAAATACA-----CGTATATTGTACATATACA--AACC-------AAAATA--GAGGATTC-AAATAACTTT-AGAAAGTTAA-TTGACAAAT-AGAATCAAGGCATTCAG-----TTAC----ACTAA-TAAAATTTTACCATGTTACTGCTTATTGTTGA-----AGTA-CAGGATAT-TA-ATAAACAAATAAGT--AGAAGAAACAATACGCCG-AAAAT--CACCATTCTGTT-TCTAAT-C--------ATAATAAT-AGCGT-------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCt
gi|13 : tT-TAAATTCA----TA-----TAA--------TGTA--CATAAACC-------AAAACACGGAGGATTCCAAATAAATCC-AGAGAATTCATTTGACAAATGGGAAAT----CAT---G-----agattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
gi|12 : aaTATATATACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATCCCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTCCAAACTGCTGACAGAATGGAGATTGA-GA-CAATggcatttagggtacactgatatgcgggta
gi|11 : AAA-AGGT--AGAAGATACAATACACCGAAAAAT--CATTGTTCTGTT-TTT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC
Alignments
lowQualScore : 11 11111 11 22222222 11 1111 1111 77777777777777777777777777777777 11111 2222 1111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 111111 1 111 3 33333333 1
lowQualScore : 4 88 2 99999 1 11 6 5 0 33 44444444 5 33 2 6 3 888 5 1 5 5 3 33 5 5 3 0 5 66 3333 0000 4 4 88888888888888888888888888888888 11111 3333 4 66 2 444 2 99 4 8 1 0000 888 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 55 44 0 6 666666 6 1 8 0 6 3 0 8 333 8 8 8 1 9 0 44 999 0 66666666 0
lowQualScore : . .. . ..... . .. . . . .. ........ . .. . . . ... . . . . . .. . . . . . .. .... .... . . ................................ ..... .... . .. . ... . .. . . . .... ... ................................................................................................. . .. .. . . ...... . . . . . . . . ... . . . . . . .. ... . ........ .
lowQualScore : 0 00 5 77777 0 33 7 7 7 66 33333333 7 44 6 5 4 888 0 2 7 3 0 66 7 0 8 1 0 99 2222 4444 4 0 66666666666666666666666666666666 11111 0000 4 33 0 777 9 66 0 0 6 6666 888 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 88 55 7 7 555555 7 0 0 8 0 2 8 0 888 0 0 2 0 6 0 00 000 2 22222222 0
consensus : CACAACCTTGAGNCGGAAGCCCCNAGATACAGGCATCTTTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCGA--CG-ACCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAA-ATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTG-ACAAAT-GGAAAT----CAT---G-----ATGC----A-CTA--TG--G-----T--AC----TNA-----TAT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
Reference ( family-2967 ) : CACAATCTTAAGTCGGAAGTCCCGAGATACAGGCATNTCCCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGATACAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCGA--CA-ACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTTG-AA-TATANAGAAT-TAA-ATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTG-ACAAAT-GGAAAC----CAT---G-----ATGC----A-CTA--TG--A-----T--AC----TTA-----TAT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGACGACCAATAGAAACTAATT-TATNTGCGATTTCGTTACA--------GCTA-TTGTTTAGGGAACCTGC
gi|1 : CACAATCTTAAGTCGGAAGTCCCGAGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATG-ACATTTCATGCGGAGCGA--CA-ACTTGGC-AT------------ACT-CT--TGAGGTTG-AA-TA------AT-CCATATGC-AG-TTGGTTAACAT-TATTGT--A---G----AACCAA-----AATA--G-ACGATT-C-AAATTAATAC-A-----TTCG-C------AAT-TGAAAT----CAT---GGCATTATGCGTGTA-CTA--TT--T-----T--AC----TGT-----TAT-----AGTTGCAGTACT-AT-AT--------ACCTATA----GA--TGCAAA-AAGT--AGAAGAGAAAATACACTG-AAAATTACC---ATTCTA-TTTCTAAC-AATAAGT-TATGACA---AGTGT-TCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|10 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATA-CCATGTTATTCGAAGCGA--CA-ACCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-AA-TAT--AGAAT-GAA-ATTC--A-TAT
gi|11 : tagaattatttacagatTG-ACAAAT-T-AAAT----CAT---G-----AT------A-TGA--TG--G-----TGCAC----TGA-----TATTC---G-----AGCA-TCAT-GTTACTGCTTGTCAATGCGTTTAATTAAAAA-AGGT--AGAAGATACAATACACCGAAAAATCATT---GTTCTG-TTTTTtt
gi|12 : TATA----TA--TACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATC-CCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTCCAAACTGCTGACAGAATGGAGATTGA-GA-CAATtatcgt
gi|13 : AAT-TAA-ATTC-A----TATAA--------TGT--A----CATAAACCAA-----AACAC-GGAGGATT-CCAAATAAATCC-AGAGAATTCATTTG-ACAAATGGGAAAT----CAT---G-----G-GC----ATTTA--GG--G-----T--AC----
gi|14 : GAC-ATTCATTTGGTATGACT-CT--TGAGGTTG-AA-TATATATAAT-TAA-ATTC--A-TAT-T--ACAT-----------------AAACCAA-----AATA--G-AGGATT-C----------------AATTCA-TTG-ACAAAT-GGAAactgatatgcgggta
gi|16 : CTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAGAt
gi|2 : TAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTG-ACATTTTATTCAGAGCGA--CA-ATCTGAC-ATTCATT-GGTATGACT-CT--TGAGATTG-AAATATATAGAATATAA-ATTC-A--TATACA---------TGT-------CATAAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCA-TTG-ACAAAT-G--AAT----CAT---G-------GC----A-TTATTTGGTA-----C--AC----TGA-----TATGC---G-----AGTA-T-cttgaattc
gi|3 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaaatcttgaggtgggaaattcccagtaaccgtcaactaaaaCATAACCTTGAAACG--AGCTCCCAGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATG-ATATTTCATTCGAAGCGA--TG-ACCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG----TATAAAGGGT-TAA-ATCC-AAATATATAAACAT-T--TGTGTA---ACA-GAACCAA-----AACA--A-AGGATT-C-AAATAAATCC-AGATAATTCG-CCG-ACAAAT-GGAAGC----CAT---G-----ATAC----A-CTA--TG--A-----T--AC----TTA-----TAT-----A-----AATA-T-AT-AT--------ATATACA----CA--CACAAA-AAGT--AGAAGGAACAATACACTG-AAAATCATT---ATTCTG-CTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGCcatgttatgcttatcattgcaattctataaatgtgatttc
gi|4 : AGATATCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATG-ATA-TTCATTCGAAGCGA--TG-ACCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG----TATAAAGGGT-TAA-ATCCAAA-TATATAAACAT-TG-TTT--A---A-A-GAA-CAA-----AACA----AGGATT-C--AATAAATCCAAGATAATTCG-CCG-ACAAAT-GGAAGC----CAT---GA----ATAA----T-CTC--TG--A-----T--AC----TTA-----TAT-----A-----AAT--T-AT-AT---------TTTACA-----A--CAC-AA-AAGTA-AGAAG-GACAATACACTG-CAAATC-TA---ATTCTG-CTT-TAGT-CATGGATGTATGACAAC-AGTGT-T-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : CTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTC-AAGCGAC-CA-ATCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTGAAA-TATATA-AAT-TAA-ATTC-----ATATAA--------TGT------ACATAAACCAA-----AACACGG-AGGATTCC-AAATAAATCC-AGAGAATTCATTTG-ACAAATGGGAAAT----CAT---G-----G-GC----ATTTA--GG--G-----T--AC----
gi|6 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgggaaattccccagtaaccgtcaataaAA-ATCC-AA--ATACACGTATAT--TGT--ACATATACAAACCAA-----AATA--G-AGGATT-C-AAATAACTTT-AGAAAGTTAA-TTG-ACAAAT-AGAATCAAGGCATTCAG-----TTAC----A-CTAA-TA--AAATTTT--ACCATGTTACTGCTTATTGTTGA-----AGTA-C-AGGAT--------AT-TA-A----TA--AACAAATAAGT--AGAAGAAACAATACGCCG-AAAATCACC---ATTCTG-TTTCTAAT-C--------ATAATAAT-AGCGT-------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCactgatatgcgggtatcatgttactgctatcaattttgcaattctaata
gi|8 : tgtgAGGATATAAGGACAC-GCTTG-ATACAAGAACTATG-ACATT--ATTTTGGGCGGACCATACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTC---A-TATAT--GAT-TAA-ATT-----TATATCAA---------T--A---ATA-AAACCAATTTTGAAAGC-A-GATATT-C-AAAT-AAT----GCGAAATCA-TTGAACAAAT-GAAagattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC
Alignments
lowQualScore : 22 11111 11 22222222 1111 77777777777777777777777777777777 11111 2222 8888888888888888888888888888888888888888888888 44444444444444444444444444444444444444444444444 11 111111 1 111 33333333 1
lowQualScore : 0 1 00 11 1 22222 88 6 5 0 33 44444444 5 33 2 4 3 888 5 1 5 5 3 5 5 2 77 5 7 5 66 9999 88 4 88888888888888888888888888888888 11111 3333 4 66 2 444 2 99 4 8 1 0 9999999999999999999999999999999999999999999999 1 5 33333333333333333333333333333333333333333333333 6 55 44 0 6 666666 6 1 8 0 6 3 0 8 333 8 8 8 1 3 8 22 999 0 66666666 0
lowQualScore : . . .. .. . ..... .. . . . .. ........ . .. . . . ... . . . . . . . . .. . . . .. .... .. . ................................ ..... .... . .. . ... . .. . . . . .............................................. . . ............................................... . .. .. . . ...... . . . . . . . . ... . . . . . . .. ... . ........ .
lowQualScore : 7 0 00 33 0 77777 22 7 7 7 66 33333333 7 44 2 5 4 888 0 2 7 3 0 7 7 7 99 0 6 0 99 4444 99 4 66666666666666666666666666666666 11111 0000 4 33 0 777 9 66 0 0 6 9 1111111111111111111111111111111111111111111111 0 0 99999999999999999999999999999999999999999999999 7 88 55 7 7 555555 7 0 0 8 0 2 8 0 888 0 0 2 0 8 8 00 000 2 22222222 0
consensus : CACAATCTTGAGNCGG-AAGTTCCCAGATACAGNCATCTTTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTG-ACAAAT-GGAAATCATG-----G--------TGC----A-CTA--------------TGGTACACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
Reference ( family-2967 ) : CACAACCTTGAGNCGG-AAGCCCCNAGATACAGGCATCTTTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTG-ACAAAT-GGAAATCATG-----A--------TGC----A-CTA--------------TGGT--ACTNAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
gi|1 : CACAATCTTAAGTCGG-AAGTCCCGAGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATG-ACATTTCATGCGGAGCG-A-CAA--CTTGGC-AT------------ACT-CT--TGAGGTTG-AA-TA-AT----C-CATATGC-AG-TTGGTTAACAT-TATTGT--A---G----AACCAA-----AATA--G-ACGATT-C-AAATTAATAC-A-----TTCG-C------AAT-TGAAATCATGGCATTA--------TGCGTGTA-CTA--------------TTTT--ACTGTT-AT-----AGTTGCAGTACT-AT-AT--------ACCTATA----GA--TGCAAA-AAGT--AGAAGAGAAAATACACTG-AAAATTACC---ATTCTA-TTTCTAAC-AATAAGT-TATGACA---AGTGT-TCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|10 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATA-CCATGTTATTCGAAGCG-A-CAA--CCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-A---ATATAGAAT-GAAATTC--A-TAT
gi|11 : tagaattatttacagatTG-ACAAAT-T-AAATCATG-----A--------T------A-TGA--------------TGGTGCACTGAT-ATTC---G-----AGCA-TCAT-GTTACTGCTTGTCAATGCGTTTAATTAAAAA-AGGT--AGAAGATACAATACACCGAAAAATCATT---GTTCTG-TTTTTtt
gi|12 : TATA----TA--TACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATC-CCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTCCAAACTGCTGACAGAATGGAGATTGA-GA-CAATtatcgt
gi|13 : AAT-TAAATTC-A----TATAA--------TGT--A----CATAAACCAA-----AACAC-GGAGGATT-CCAAATAAATCC-AGAGAATTCATTTG-ACAAATGGGAAATCATG-----G---------GC----ATTTA--------------GGGTACACTGAT-AT-----
gi|14 : GAC-ATTCATTTGGTATGACT-CT--TGAGGTTG-AA-TATATATAAT-TAAATTC--A-TAT-T--ACAT-----------------AAACCAA-----AATA--G-AGGATT-C----------------AATTCA-TTG-ACAAAT-GGAAgcgggta
gi|16 : CTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAGAt
gi|2 : AATCTTGAGGTGGGAAATTCCCAGTAACCGTCAACTA-AAATAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTG-ACATTTTATTCAGAGCG-A-CAA--TCTGAC-ATTCA-TTGGTATGACT-CT--TGAGATTG-AAATATATAGAATATAAATTC-A--TATACA---------TGT-------CATAAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCA-TTG-ACAAAT-G--AATCATG---------------GC----A-TTATT------------TGGTACACTGAT-ATGC---G-----AGTA-T-cttgaattc
gi|3 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaCATAACCTTGAAACG---AGCTCCCAGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATG-ATATTTCATTCGAAGCG-A-TGA--CCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG----TATAAAGGGT-TAAATCC-AAATATATAAACAT-T--TGTGTA---ACA-GAACCAA-----AACA--A-AGGATT-C-AAATAAATCC-AGATAATTCG-CCG-ACAAAT-GGAAGCCATG-----A--------TAC----A-CTA--------------TGAT--ACTTAT-AT-----A-----AATA-T-AT-AT--------ATATACA----CA--CACAAA-AAGT--AGAAGGAACAATACACTG-AAAATCATT---ATTCTG-CTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGCcatgttatgcttatcattgcaattctataaatgtgatttc
gi|4 : AGATATCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATG-ATA-TTCATTCGAAGCG-A-TGA--CCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG----TATAAAGGGT-TAAATCCAAA-TATATAAACAT-TG-TTT--A---A-A-GAA-CAA-----AACA----AGGATT-C--AATAAATCCAAGATAATTCG-CCG-ACAAAT-GGAAGCCATGA----A--------TAA----T-CTC--------------TGAT--ACTTAT-AT-----A-----AAT--T-AT-AT---------TTTACA-----A--CAC-AA-AAGTA-AGAAG-GACAATACACTG-CAAATC-TA---ATTCTG-CTT-TAGT-CATGGATGTATGACAAC-AGTGT-T-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : CTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTC-AAGCG-ACCAA--TCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTGAAA-TATATA-AAT-TAAATTC-----ATATAA--------TGT------ACATAAACCAA-----AACACGG-AGGATTCC-AAATAAATCC-AGAGAATTCATTTG-ACAAATGGGAAATCATG-----G---------GC----ATTTA--------------GGGTACACTGAT-AT-----
gi|6 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgggaaattccccagtaaccgtcaataaAAATCC-AA--ATACACGTATAT--TGT--ACATATACAAACCAA-----AATA--G-AGGATT-C-AAATAACTTT-AGAAAGTTAA-TTG-ACAAAT-AGAA-TCAAG-----GCATTCAGTTAC----A-CTAATAAAATTTTACCATGTT--ACTGCTTATTGTTGA-----AGTA-C-AGGAT--------AT-TA-A----TA--AACAAATAAGT--AGAAGAAACAATACGCCG-AAAATCACC---ATTCTG-TTTCTAAT-C--------ATAATAAT-AGCGT-------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCgcgggtatcatgttactgctatcaattttgcaattctaata
gi|8 : tgtgAGGATATAAGGACAC-GCTTG-ATACAAGAACTATG-ACATT--ATTTTGGGCGGA-CCATACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTC---A-TATAT--GAT-TAAATT-----TATATCAA---------T--A---ATA-AAACCAATTTTGAAAGC-A-GATATT-C-AAAT-AAT----GCGAAATCA-TTGAACAAAT-GAAagattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC
Alignments
lowQualScore : 11 1 1111111 11 22222222 1111 77777777777777777777777777777777 11111 2222 1111111 2222222222222222 444444444444444444444444444444444444444 44444444444444444444444444444444444444444444444 11 111111 1 111 33333333 1
lowQualScore : 1 22 0 9999999 88 6 5 0 33 44444444 5 33 2 4 3 888 5 1 5 5 3 5 5 2 77 5 7 5 66 9999 8 4 88888888888888888888888888888888 11111 3333 4 66 1 0 66666 99 4 8 1 3333333 9999999999999999 777777777777777777777777777777777777777 4 11111111111111111111111111111111111111111111111 6 55 44 0 6 666666 6 1 8 0 6 3 0 8 333 8 8 8 1 3 8 22 999 0 66666666 0
lowQualScore : . .. . ....... .. . . . .. ........ . .. . . . ... . . . . . . . . .. . . . .. .... . . ................................ ..... .... . .. . . ..... .. . . . ....... ................ ....................................... . ............................................... . .. .. . . ...... . . . . . . . . ... . . . . . . .. ... . ........ .
lowQualScore : 0 55 0 3333333 22 7 7 7 66 33333333 7 44 2 5 4 888 0 2 7 3 0 7 7 7 99 0 6 0 99 4444 8 4 66666666666666666666666666666666 11111 0000 4 33 8 1 66666 66 0 0 6 0000000 4444444444444444 444444444444444444444444444444444444444 4 00000000000000000000000000000000000000000000000 7 88 55 7 7 555555 7 0 0 8 0 2 8 0 888 0 0 2 0 8 8 00 000 2 22222222 0
consensus : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATG-G--------TGCA-TTA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
Reference ( family-2967 ) : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTTTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATG-G--------TGCA-CTA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
gi|1 : CACAATCTTAAGTCGG-AAGTCCCG-AGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATG-ACATTTCATGCGGAGCG-A-CAA--CTTGGC-AT------------ACT-CT--TGAGGTTG-AA-TA-AT----C-CATATGC-AG-TTGGTTAACAT-TATTGT--A---G----AACCAA-----AATA--G-ACGATT-C-AAATTAATAC-A-----TTCG-C------AAT-TGA-------AAT----------------CATG-G----------CA-TTA------TGCGTGTACTATTTTACTGTT-AT-----AGTTGCAGTACT-AT-AT--------ACCTATA----GA--TGCAAA-AAGT--AGAAGAGAAAATACACTG-AAAATTACC---ATTCTA-TTTCTAAC-AATAAGT-TATGACA---AGTGT-TCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|10 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATA-CCATGTTATTCGAAGCG-A-CAA--CCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-A---ATATAGAAT-GAAATTC--A-TAT
gi|11 : tagaattatttacagatTGA-CAAAT-T-A-------AAT----------------CATG-A--------T--A-TGA------TG---GTGC------ACTGAT-ATTC---G-----AGCA-TCAT-GTTACTGCTTGTCAATGCGTTTAATTAAAAA-AGGT--AGAAGATACAATACACCGAAAAATCATT---GTTCTG-TTTTTtt
gi|12 : TATA----TA--TACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATC-CCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTCCAAACTGCTGACAGAATGGAGATTGA-GA-CAATtatcgt
gi|13 : AAT-TAAATTC-A----TATAA--------TGT--A----CATAAACCAA-----AACAC-GGAGGATT-CCAAATAAATCC-AGAGAATTCATTTGA-CAAATGGGA-------AAT----------------CATG-G---------GCATTTA------GG---GTAC------ACTGAT-AT-----
gi|14 : GAC-ATTCATTTGGTATGACT-CT--TGAGGTTG-AA-TATATATAAT-TAAATTC--A-TAT-T--ACAT-----------------AAACCAA-----AATA--G-AGGATT-C----------------AATTCA-TTGA-CAAAT-GGA-------Agcgggta
gi|16 : CTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAGAt
gi|2 : AATCTTGAGGTGGGAAATTCCC-AGTAACCGTCAACTA-AAATAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTG-ACATTTTATTCAGAGCG-A-CAA--TCTGAC-ATTCA-TTGGTATGACT-CT--TGAGATTG-AAATATATAGAATATAAATTC-A--TATACA---------TGT-------CATAAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCA-TTGA-CAAAT-G---------AAT----------------CATG-----------GCA-TTATT----TG---GTAC------ACTGAT-ATGC---G-----AGTA-T-cttgaattc
gi|3 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaCATAACCTTGAAACG---AGCTCCC-AGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATG-ATATTTCATTCGAAGCG-A-TGA--CCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG----TATAAAGGGT-TAAATCC-AAATATATAAACAT-T--TGTGTA---ACA-GAACCAA-----AACA--A-AGGATT-C-AAATAAATCC-AGATAATTCG-CCGA-CAAAT-GGA-------AGC----------------CATG-A--------TACA-CTA------TG---ATAC--------TTAT-AT-----A-----AATA-T-AT-AT--------ATATACA----CA--CACAAA-AAGT--AGAAGGAACAATACACTG-AAAATCATT---ATTCTG-CTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGCcatgttatgcttatcattgcaattctataaatgtgatttc
gi|4 : AGATATCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATG-ATA-TTCATTCGAAGCG-A-TGA--CCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG----TATAAAGGGT-TAAATCCAAA-TATATAAACAT-TG-TTT--A---A-A-GAA-CAA-----AACA----AGGATT-C--AATAAATCCAAGATAATTCG-CCGA-CAAAT-GGA-------AGC----------------CATGAA--------TAAT-CTC------TG-----AT------ACTTAT-AT-----A-----AAT--T-AT-AT---------TTTACA-----A--CAC-AA-AAGTA-AGAAG-GACAATACACTG-CAAATC-TA---ATTCTG-CTT-TAGT-CATGGATGTATGACAAC-AGTGT-T-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : GG-AAATTCCCCAG---TAACCGTCAATAACTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTC-AAGCG-ACCAA--TCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTGAAA-TATATA-AAT-TAAATTC-----ATATAA--------TGT------ACATAAACCAA-----AACACGG-AGGATTCC-AAATAAATCC-AGAGAATTCATTTGA-CAAATGGGA-------AAT----------------CATG-G---------GCATTTA------GG---GTAC------ACTGAT-AT-----
gi|6 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgAAATCC-AA--ATACACGTATAT--TGT--ACATATACAAACCAA-----AATA--G-AGGATT-C-AAATAACTTT-AGAAAGTTAA-TTGA-CAAAT-AGA-------A-T----------------CAAG-GCATTCAGTTACA-CTAATAAAATT---TTACCATGTTACTGCTTATTGTTGA-----AGTA-C-AGGAT--------AT-TA-A----TA--AACAAATAAGT--AGAAGAAACAATACGCCG-AAAATCACC---ATTCTG-TTTCTAAT-C--------ATAATAAT-AGCGT-------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCgcgggtatcatgttactgctatcaattttgcaattctaata
gi|8 : tgtgAGGATATAAGGACAC-GCTTG-ATACAAGAACTATG-ACATT--ATTTTGGGCGGA-CCATACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTC---A-TATATG--AT-TAAATT-----TATATCAA---------T--A---ATA-AAACCAATTTTGAAAGC-A-GATATT-C-AAATAA-TGC----GAAATCA-TTGAACAAAT-GAAGCAAGGCAATTTNNNNNNNNNNNNNNNNNN-N--------NNNN-NNA------TG---GTAC------ACTGAT-AT-----agattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC
Alignments
lowQualScore : 11 1 1111111 11 22222222 1111 77777777777777777777777777777777 11111 2222 1111111 2222222222222222 444444444444444444444444444444444444444 44444444444444444444444444444444444444444444444 11 111111 1 111 33333333 1
lowQualScore : 1 22 0 9999999 44 6 5 0 33 44444444 5 33 2 4 3 888 5 1 5 5 3 5 5 2 77 5 7 5 66 9999 8 4 88888888888888888888888888888888 11111 3333 4 66 1 0 66666 99 4 8 1 3333333 9999999999999999 333333333333333333333333333333333333333 4 11111111111111111111111111111111111111111111111 6 55 44 0 6 666666 6 1 8 0 6 3 0 8 333 8 8 8 1 3 8 22 999 0 66666666 0
lowQualScore : . .. . ....... .. . . . .. ........ . .. . . . ... . . . . . . . . .. . . . .. .... . . ................................ ..... .... . .. . . ..... .. . . . ....... ................ ....................................... . ............................................... . .. .. . . ...... . . . . . . . . ... . . . . . . .. ... . ........ .
lowQualScore : 0 55 0 3333333 88 7 7 7 66 33333333 7 44 2 5 4 888 0 2 7 3 0 7 7 7 99 0 6 0 99 4444 8 4 66666666666666666666666666666666 11111 0000 4 33 8 1 66666 66 0 0 6 0000000 4444444444444444 888888888888888888888888888888888888888 4 00000000000000000000000000000000000000000000000 7 88 55 7 7 555555 7 0 0 8 0 2 8 0 888 0 0 2 0 8 8 00 000 2 22222222 0
consensus : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATGG--------TGCA-T-TA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
Reference ( family-2967 ) : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATGG--------TGCA-T-TA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
gi|1 : CACAATCTTAAGTCGG-AAGTCCCG-AGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATG-ACATTTCATGCGGAGCG-A-CAA--CTTGGC-AT------------ACT-CT--TGAGGTTG-AA-TA-AT----C-CATATGC-AG-TTGGTTAACAT-TATTGT--A---G----AACCAA-----AATA--G-ACGATT-C-AAATTAATAC-A-----TTCG-C------AAT-TGA-------AAT----------------CATGG----------CA-T-TA------TGCGTGTACTATTTTACTGTT-AT-----AGTTGCAGTACT-AT-AT--------ACCTATA----GA--TGCAAA-AAGT--AGAAGAGAAAATACACTG-AAAATTACC---ATTCTA-TTTCTAAC-AATAAGT-TATGACA---AGTGT-TCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|10 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATA-CCATGTTATTCGAAGCG-A-CAA--CCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-A---ATATAGAAT-GAAATTC--A-TAT
gi|11 : tagaattatttacagatTGA-CAAAT-T-A-------AAT----------------CATGA--------T--A-T-GA------TG---GTGC------ACTGAT-ATTC---G-----AGCA-TCAT-GTTACTGCTTGTCAATGCGTTTAATTAAAAA-AGGT--AGAAGATACAATACACCGAAAAATCATT---GTTCTG-TTTTTtt
gi|12 : TATA----TA--TACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATC-CCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTCCAAACTGCTGACAGAATGGAGATTGA-GA-CAATtatcgt
gi|13 : AAT-TAAATTC-A----TATAA--------TGT--A----CATAAACCAA-----AACAC-GGAGGATT-CCAAATAAATCC-AGAGAATTCATTTGA-CAAATGGGA-------AAT----------------CATGG---------GCATT-TA------GG---GTAC------ACTGAT-AT-----
gi|14 : GAC-ATTCATTTGGTATGACT-CT--TGAGGTTG-AA-TATATATAAT-TAAATTC--A-TAT-T--ACAT-----------------AAACCAA-----AATA--G-AGGATT-C----------------AATTCA-TTGA-CAAAT-GGA-------Agcgggta
gi|16 : CTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAGAt
gi|2 : AATCTTGAGGTGGGAAATTCCC-AGTAACCGTCAACTA-AAATAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTG-ACATTTTATTCAGAGCG-A-CAA--TCTGAC-ATTCA-TTGGTATGACT-CT--TGAGATTG-AAATATATAGAATATAAATTC-A--TATACA---------TGT-------CATAAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCA-TTGA-CAAAT-G---------AAT----------------CATG----------GCA-T-TATT----TG---GTAC------ACTGAT-ATGC---G-----AGTA-T-cttgaattc
gi|3 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaCATAACCTTGAAACG---AGCTCCC-AGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATG-ATATTTCATTCGAAGCG-A-TGA--CCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG----TATAAAGGGT-TAAATCC-AAATATATAAACAT-T--TGTGTA---ACA-GAACCAA-----AACA--A-AGGATT-C-AAATAAATCC-AGATAATTCG-CCGA-CAAAT-GGA-------AGC----------------CATGA--------TACA-C-TA------TG---ATAC--------TTAT-AT-----A-----AATA-T-AT-AT--------ATATACA----CA--CACAAA-AAGT--AGAAGGAACAATACACTG-AAAATCATT---ATTCTG-CTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGCcatgttatgcttatcattgcaattctataaatgtgatttc
gi|4 : AGATATCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATG-ATA-TTCATTCGAAGCG-A-TGA--CCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG----TATAAAGGGT-TAAATCCAAA-TATATAAACAT-TG-TTT--A---A-A-GAA-CAA-----AACA----AGGATT-C--AATAAATCCAAGATAATTCG-CCGA-CAAAT-GGA-------AGC----------------CATGA--------ATAA-TCTC------TG-----AT------ACTTAT-AT-----A-----AAT--T-AT-AT---------TTTACA-----A--CAC-AA-AAGTA-AGAAG-GACAATACACTG-CAAATC-TA---ATTCTG-CTT-TAGT-CATGGATGTATGACAAC-AGTGT-T-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : GG-AAATTCCCCAG---TAACCGTCAATAACTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTC-AAGCG-ACCAA--TCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTGAAA-TATATA-AAT-TAAATTC-----ATATAA--------TGT------ACATAAACCAA-----AACACGG-AGGATTCC-AAATAAATCC-AGAGAATTCATTTGA-CAAATGGGA-------AAT----------------CATGG---------GCATT-TA------GG---GTAC------ACTGAT-AT-----
gi|6 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgAAATCC-AA--ATACACGTATAT--TGT--ACATATACAAACCAA-----AATA--G-AGGATT-C-AAATAACTTT-AGAAAGTTAA-TTGA-CAAAT-AGA-------A-T----------------CAAGGCATTCAGTTACA-C-TAATAAAATT---TTACCATGTTACTGCTTATTGTTGA-----AGTA-C-AGGAT--------AT-TA-A----TA--AACAAATAAGT--AGAAGAAACAATACGCCG-AAAATCACC---ATTCTG-TTTCTAAT-C--------ATAATAAT-AGCGT-------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCgcgggtatcatgttactgctatcaattttgcaattctaata
gi|8 : tgtgAGGATATAAGGACAC-GCTTG-ATACAAGAACTATG-ACATT--ATTTTGGGCGGA-CCATACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTC---A-TATATG--AT-TAAATT-----TATATCAA---------T--A---ATA-AAACCAATTTTGAAAGC-A-GATATT-C-AAATAA-TGC----GAAATCA-TTGAACAAAT-GAAGCAAGGCAATTTNNNNNNNNNNNNNNNNNNN--------NNNN-N-NA------TG---GTAC------ACTGAT-AT-----agattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC
Alignments
lowQualScore : 11 1 1111111 11 22222222 1111 77777777777777777777777777777777 11111 2222 1111111 2222222222222222 444444444444444444444444444444444444444 44444444444444444444444444444444444444444444444 11 111111 1 111 33333333 1
lowQualScore : 1 22 0 9999999 44 6 5 0 33 44444444 5 33 2 4 3 888 5 1 5 5 3 5 5 2 77 5 7 5 66 9999 8 4 88888888888888888888888888888888 11111 3333 4 66 1 0 66666 99 4 8 1 3333333 9999999999999999 333333333333333333333333333333333333333 4 11111111111111111111111111111111111111111111111 6 55 44 0 6 666666 6 1 8 0 6 3 0 8 333 8 8 8 1 3 8 22 999 0 66666666 0
lowQualScore : . .. . ....... .. . . . .. ........ . .. . . . ... . . . . . . . . .. . . . .. .... . . ................................ ..... .... . .. . . ..... .. . . . ....... ................ ....................................... . ............................................... . .. .. . . ...... . . . . . . . . ... . . . . . . .. ... . ........ .
lowQualScore : 0 55 0 3333333 88 7 7 7 66 33333333 7 44 2 5 4 888 0 2 7 3 0 7 7 7 99 0 6 0 99 4444 8 4 66666666666666666666666666666666 11111 0000 4 33 8 1 66666 66 0 0 6 0000000 4444444444444444 888888888888888888888888888888888888888 4 00000000000000000000000000000000000000000000000 7 88 55 7 7 555555 7 0 0 8 0 2 8 0 888 0 0 2 0 8 8 00 000 2 22222222 0
consensus : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATGG--------TGCA-T-TA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
Reference ( family-2967 ) : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATGG--------TGCA-T-TA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
gi|1 : CACAATCTTAAGTCGG-AAGTCCCG-AGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATG-ACATTTCATGCGGAGCG-A-CAA--CTTGGC-AT------------ACT-CT--TGAGGTTG-AA-TA-AT----C-CATATGC-AG-TTGGTTAACAT-TATTGT--A---G----AACCAA-----AATA--G-ACGATT-C-AAATTAATAC-A-----TTCG-C------AAT-TGA-------AAT----------------CATGG----------CA-T-TA------TGCGTGTACTATTTTACTGTT-AT-----AGTTGCAGTACT-AT-AT--------ACCTATA----GA--TGCAAA-AAGT--AGAAGAGAAAATACACTG-AAAATTACC---ATTCTA-TTTCTAAC-AATAAGT-TATGACA---AGTGT-TCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|10 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATA-CCATGTTATTCGAAGCG-A-CAA--CCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-A---ATATAGAAT-GAAATTC--A-TAT
gi|11 : tagaattatttacagatTGA-CAAAT-T-A-------AAT----------------CATGA--------T--A-T-GA------TG---GTGC------ACTGAT-ATTC---G-----AGCA-TCAT-GTTACTGCTTGTCAATGCGTTTAATTAAAAA-AGGT--AGAAGATACAATACACCGAAAAATCATT---GTTCTG-TTTTTtt
gi|12 : TATA----TA--TACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATC-CCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTCCAAACTGCTGACAGAATGGAGATTGA-GA-CAATtatcgt
gi|13 : AAT-TAAATTC-A----TATAA--------TGT--A----CATAAACCAA-----AACAC-GGAGGATT-CCAAATAAATCC-AGAGAATTCATTTGA-CAAATGGGA-------AAT----------------CATGG---------GCATT-TA------GG---GTAC------ACTGAT-AT-----
gi|14 : GAC-ATTCATTTGGTATGACT-CT--TGAGGTTG-AA-TATATATAAT-TAAATTC--A-TAT-T--ACAT-----------------AAACCAA-----AATA--G-AGGATT-C----------------AATTCA-TTGA-CAAAT-GGA-------Agcgggta
gi|16 : CTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAGAt
gi|2 : AATCTTGAGGTGGGAAATTCCC-AGTAACCGTCAACTA-AAATAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTG-ACATTTTATTCAGAGCG-A-CAA--TCTGAC-ATTCA-TTGGTATGACT-CT--TGAGATTG-AAATATATAGAATATAAATTC-A--TATACA---------TGT-------CATAAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCA-TTGA-CAAAT-G---------AAT----------------CATG----------GCA-T-TATT----TG---GTAC------ACTGAT-ATGC---G-----AGTA-T-cttgaattc
gi|3 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaCATAACCTTGAAACG---AGCTCCC-AGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATG-ATATTTCATTCGAAGCG-A-TGA--CCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG----TATAAAGGGT-TAAATCC-AAATATATAAACAT-T--TGTGTA---ACA-GAACCAA-----AACA--A-AGGATT-C-AAATAAATCC-AGATAATTCG-CCGA-CAAAT-GGA-------AGC----------------CATGA--------TACA-C-TA------TG---ATAC--------TTAT-AT-----A-----AATA-T-AT-AT--------ATATACA----CA--CACAAA-AAGT--AGAAGGAACAATACACTG-AAAATCATT---ATTCTG-CTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGCcatgttatgcttatcattgcaattctataaatgtgatttc
gi|4 : AGATATCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATG-ATA-TTCATTCGAAGCG-A-TGA--CCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG----TATAAAGGGT-TAAATCCAAA-TATATAAACAT-TG-TTT--A---A-A-GAA-CAA-----AACA----AGGATT-C--AATAAATCCAAGATAATTCG-CCGA-CAAAT-GGA-------AGC----------------CATGA--------ATAA-TCTC------TG-----AT------ACTTAT-AT-----A-----AAT--T-AT-AT---------TTTACA-----A--CAC-AA-AAGTA-AGAAG-GACAATACACTG-CAAATC-TA---ATTCTG-CTT-TAGT-CATGGATGTATGACAAC-AGTGT-T-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : GG-AAATTCCCCAG---TAACCGTCAATAACTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTC-AAGCG-ACCAA--TCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTGAAA-TATATA-AAT-TAAATTC-----ATATAA--------TGT------ACATAAACCAA-----AACACGG-AGGATTCC-AAATAAATCC-AGAGAATTCATTTGA-CAAATGGGA-------AAT----------------CATGG---------GCATT-TA------GG---GTAC------ACTGAT-AT-----
gi|6 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgAAATCC-AA--ATACACGTATAT--TGT--ACATATACAAACCAA-----AATA--G-AGGATT-C-AAATAACTTT-AGAAAGTTAA-TTGA-CAAAT-AGA-------A-T----------------CAAGGCATTCAGTTACA-C-TAATAAAATT---TTACCATGTTACTGCTTATTGTTGA-----AGTA-C-AGGAT--------AT-TA-A----TA--AACAAATAAGT--AGAAGAAACAATACGCCG-AAAATCACC---ATTCTG-TTTCTAAT-C--------ATAATAAT-AGCGT-------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCgcgggtatcatgttactgctatcaattttgcaattctaata
gi|8 : tgtgAGGATATAAGGACAC-GCTTG-ATACAAGAACTATG-ACATT--ATTTTGGGCGGA-CCATACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTC---A-TATATG--AT-TAAATT-----TATATCAA---------T--A---ATA-AAACCAATTTTGAAAGC-A-GATATT-C-AAATAA-TGC----GAAATCA-TTGAACAAAT-GAAGCAAGGCAATTTNNNNNNNNNNNNNNNNNNN--------NNNN-N-NA------TG---GTAC------ACTGAT-AT-----agattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
blockSeqs : G GG C TAACCGT TT A A AT GATCT A TG T C C CTT A T A T G G C A TA T T G TC AAA G A AAATACACGTATATTGTACATATAC TTTTG CGG C CA A AAGAT AT A G G GCAAGGC TTNNNNNNNNNNNNNN GCATTCAGTTACACTAATAAAATTTTACCATGTT T TCGAGCATCATGTTACTGCTTGTCAATGCGTTTAATT T TT AT A CCAGT C T C C C A GTC C G G A T C AG CAT AATATTGG G
blockSeqs : A G . TAAC TT . . G GATCG . CG T T C . . A . T A . . A . . T . . AAA T . AAATATATAAACATTTGTGTAACA . CGG . A A AGAG AT . G G . . GGCATTTAGGGTAC . TGTTGAAGTACAGGATATTAATAA . A GA . ATT . C . G C . TC . . G A T C CG GA . .
blockSeqs : . . ATA AT . . . ATCG . TG C A T . . T . C G . . G . . A . . AA G . AAATATATAAACATTGTTTAAA . CG . A A AGAG A . . G . . GCATTATTTGGTAC . AAATATATATATATACACAC . . GA . ATT . C . . T . T . . . A T . AT T . .
blockSeqs : A . . . G . TG C A C . . C . C G . . G . . A . . A G . ATATAATGTACAT . CA . A A AGAT A . . G . . ATACACTATGATAC . AAATTATATTTTACAAC . . AA . ACC . C . . . . . . . . . .
blockSeqs : . . . G . C T T G . . C . . T . . A . . A . . A G . ATATACATGTCAT . G . A A AGAG G . . G . . GGCATTTAGGGTAC . . . G . TA . .
blockSeqs : . . G . . . . T . . T . . . . . C . . T . . . . . ATATAATGTACAT . A . A C AGAA G . . G . . NNNNNNNATGGTAC .
blockSeqs : . . . . . A . . . . . . . TATATCAATAATA . G . . . G A . . A . . AATAATCTCTGAT .
blockSeqs : . ATATTACAT . . . . . . A . . . . . ATATGATGGTGC .
blockSeqs : . . . .
blockSeqCons : A*** ATATAATGTACAT******************* AGAG* GNNNTNTATGGTAC************************* TAAGTATANATNTTACATAC*************************** T**
originalCons : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-TATATAGAAT-TAAATTC-AA-TATATAAACAT-T--TGT--A---ACA-AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCC-AGAGAATTCG-TTGA-CAAAT-GGA-------AAT----------------CATGG--------TGCA-T-TA------TG---GTAC------ACTGAT-AT-----A-----AGTA-T-AT-AT--------ATCTATA----TA--TACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGT-TCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
finalCons : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATG-ACATTTCATTCGGAGCG-A-CGA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTGA---TATATAGAAT-TAAATTCATATAATGTACAT-------------------AAACCAA-----AACAC-G-AGGATT-C-AAATAAATCCAGAG-AATTCG-TTGA-CAAAT-GGA-------AAT----------------CATGGNNNTNTATGGTAC-------------------------ACTGAT-ATTAAGTATANATNTTACATAC---------------------------ACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAAC-AGTGTT--CAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC
Alignments
lowQualScore : 11 1 1111111 11 22222222 4444444444 1111 222222222 111111 11111 22 111111 111111 777777777777777777777777777777777777777777777777777777777777777777777777 11 111111 1 111 11 33333333 1
lowQualScore : 1 22 0 9999999 44 6 5 0 33 44444444 5 33 2 4 3 888 5 1 5 5 4 5 88 77 5 7 5 66 0000000000 888 4 7777 55 444444444 777 111111 11111 66 8 1 2 444 2 99 4 999 99999 1 111111 444444 66 666666666666666666666666666666666666666666666666666666666666666666666666 6 55 44 0 6 666666 6 1 8 0 6 3 0 444 99 8 8 8 1 3 8 22 999 0 66666666 0
lowQualScore : . .. . ....... .. . . . .. ........ . .. . . . ... . . . . . . .. .. . . . .. .......... ... . .... .. ......... ... ...... ..... .. . . . ... . .. . ... ..... . ...... ...... .. ........................................................................ . .. .. . . ...... . . . . . . . ... .. . . . . . . .. ... . ........ .
lowQualScore : 0 55 0 3333333 88 7 7 7 66 33333333 7 44 2 5 4 888 0 2 7 3 0 7 44 99 0 6 0 99 1111111111 666 4 0000 55 999999999 888 222222 11111 77 9 9 0 777 9 66 0 666 77777 0 222222 444444 99 999999999999999999999999999999999999999999999999999999999999999999999999 7 88 55 7 7 555555 7 0 0 8 0 2 8 000 88 0 0 2 0 8 8 00 000 2 22222222 0
consensus : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATGA-CATTTCATTCGGAGCG-AC-GA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-AA-------TATATAG--GAT-TAAATTC----A--TAT-A-A-----TGT---ACATA----AACCAA-----AACAC-GAGGATT-CAAATAAATCC-AGAGAATTCG-TTG-ACAAAT-GGAAATCATG-GCANTNT-ATG-GTAC------ACTG--AT-----------------------A-T-T----G-AGTA-TAC-ATGT-TAC---------ATAC--------ACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAACA---GTGTTCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
Reference ( family-2967 ) : CACAATCTTGAGNCGG-AAGTTCCC-AGATACAGNCATCTNTCGCTAGTGA-CAATCCA-CTGGCAAA--TCGTGACATGCATTGGAAG---G----GTGCTG-ATGCGGAGGACANAAGGACACCG---G-ATTCAAGAACTATGA-CATTTCATTCGGAGCG-AC-GA--CCTGGC-ATTCANTTGGTATGACT-CT--TGAGGTTG-A--------TATATAG--AAT-TAAATTC----A--TAT-A-A-----TGT---ACATA----AACCAA-----AACAC-GAGGATT-CAAATAAATCC-AGAGAATTCG-TTG-ACAAAT-GGAAATCATG-GNNNTNT-ATG-GTAC------ACTG--AT-----------------------A-T-T----A-AGTA-TAN-ATNT-TAC---------ATAC--------ACAAA-AAGT--AGAAGAAACAATACACCG-AAAATCACC---ATTCTG-TTTCTAGT-CATGGAT-TATGACAACA---GTGTT-CAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAACTAATTCTATNNGCGATTTCGTTACA--------GCTA-TTGTTCAGGGAACCTGC
gi|1 : CACAATCTTAAGTCGG-AAGTCCCG-AGATACAGGCATATCCCGCTAATGA-CAATCCA-CCGGCAAA--TCGTGACGTGCATTGGGAG---G----GTGATG-ACGTGGAGGGCACAGGGACACCA---G-ATTCAAGAACTATGA-CATTTCATGCGGAGCG-AC-AA--CTTGGC-AT------------ACT-CT--TGAGGTTG-AATAATCCATATGCAGTTGGT-TAA---C----A--T-T-A-T-----TGT---A---G----AACCAA-----AATA--GACGATT-CAAATTAATAC-A-----TTCG-C------AAT-TGAAATCATG-GCATTAT-GCGTGTACTATTTTACTGTTAT-----------------------AGT-T----GCAGTACTAT-ATACCTAT---------AGAT--------GCAAA-AAGT--AGAAGAGAAAATACACTG-AAAATTACC---ATTCTA-TTTCTAAC-AATAAGT-TATGACA--A---GTGTTCCAAA-TGCTGACA-AATAGGGTTTGACGACCAATAGAAACTTATCATATTTTCGATTTCCTCACC--------GATA-TTG
gi|10 : tattaatttgatctgtactttagtgggaatttgccccaaaccaagaattcttaattatattggggtttttcatctttaaaatgggtattggcatA-CTGACAAA--TCGTGACATGAATAAGAAG---G----ATGCTG-ATATGGAAGATACAAAGACACCA---G-ATTAAAAAACTATAC-CATGTTATTCGAAGCG-AC-AA--CCTGGC-ATTCATTTGGCATGACT-TT--TGAGGTTG-A---------ATATAG--AAT-GAAATTC----A--TAT-
gi|11 : tagaattatttacagatTG-ACAAAT-T-AAATCATG----ATATGATG-GTGC------ACTG--AT-----------------------A-T-TC---G-AGCA-T-C-ATGT-TACTGCTTGTCAATGCGTTTAATTAAAAA-AGGT--AGAAGATACAATACACCGAAAAATCATT---GTTCTG-TTTTTtt
gi|12 : -TAT---------ATAT--------ACAAA-AAGTTTAGAAGGAACAATACACTG-AAAATC-CCAGTATTCTGCTCTCTAGTCCATGGATCTATGA-AACAAGTGTGTC-CAAACTGCTGACAGAATGGAGATTGA-GA-CAATtatcgt
gi|13 : --AAT-TAAATTC----A--TAT-A-A-----TGT---ACATA----AACCAA-----AACACGGAGGATTCCAAATAAATCC-AGAGAATTCATTTG-ACAAATGGGAAATCATG-GGCATTT-AGG-GTAC------ACTG--AT-----------------------A-T-
gi|14 : GAC-ATTCATTTGGTATGACT-CT--TGAGGTTGAA--------TATATAT--AAT-TAAATTC----A--TAT-----------T---ACATA----AACCAA-----AATA--GAGGATT-C---------------AATTCA-TTG-ACAAAT-GGAAgcgggta
gi|16 : CTAGTGA-CAATCCA-CTGGCAAA--CCGTGGCATGCACTGGAAG---GATCTGTGCTA-ATGCGGAGGATATAAGGACACCG---G-ATACAAGAt
gi|2 : AATCTTGAGGTGGGAAATTCCC-AGTAACCGTCAACTA-AAATAGTGA-CAATCCA-CTGGAAAAG-TCGTGACATGCATGGAAAGATCG----GTGCTG-AT---------------ACACTG---G-ATTCAAGAACTTTGA-CATTTTATTCAGAGCG-AC-AA--TCTGAC-ATTCA-TTGGTATGACT-CT--TGAGATTG-AAA------TATATAG--AATATAAATTC----A--TAT-ACA-----TGT----CATA----AACCAA-----AACAC-GAGGATT-CAAATAAATCC-AGAGAATTCA-TTG-ACAAAT-G--AATCATG-GCATTAT-TTG-GTAC------ACTG--AT-----------------------A-TGC----G-AGTA-T-C-ATGT-TActtgaattc
gi|3 : gggggggggggggggggggggggggggggcaaatatcacttcaaattgaggcatatatttcacctgtactttcatgggaaactgcctcgtgctactcgaaacttgtgattatacattaaccaaaaatttttaattatacttttttttttgtcttcaaaacaggttatcattcctaCATAACCTTGAAACG---AGCTCCC-AGATA------TCTTTCGCTAGTGA-CAACCCA-CTGGAAAA--TCGTGACATGTATTGGAAG---G----GTGCTG-ATGTGGAGGACAAAAGGACACCG---G-ATCCAACAGCTATGA-TATTTCATTCGAAGCG-AT-GA--CCTAGC-TTTCAATTGGTATGACT-TT--TGAGGTTG----------TATAAAG--GGT-TAAATCCAAATA--TAT-A-AACATTTGTGTAACA-G----AACCAA-----AACA--AAGGATT-CAAATAAATCC-AGATAATTCG-CCG-ACAAAT-GGAAGCCATG-ATACACT-ATG---AT------ACTT--AT-----------------------A---T----A-AATA-TAT-ATATATAC---------ACAC--------ACAAA-AAGT--AGAAGGAACAATACACTG-AAAATCATT---ATTCTG-CTTCTAGT-CATGGAT-TATGACAACA---GTGTTCCAAA-TGCTGACA-AATGGAGATTGATGACCAATAGAAATTAATTCTATAGGCCATTTCGTTACA--------GCTA-TTGTTCAGGAAATCTGCtgcttatcattgcaattctataaatgtgatttc
gi|4 : AGATATCTTTCGCTGTCGA-CAAACCAACTGGCAAA--TCGTGACATGTATT-GAAG---G----GTGCTGAATGTGAAGGACAAAAGGACACGG---GAATCCCACAACTATGA-TA-TTCATTCGAAGCG-AT-GA--CCTAGCTTTTCAATTGGTATGACT-TTTCTGAGGTTG----------TATAAAG--GGT-TAAATCCAAATA--TAT-A-AACAT-TGT---TTAAA----GAACAA-----AACA---AGGATT-C-AATAAATCCAAGATAATTCG-CCG-ACAAAT-GGAAGCCATGAATAATCT-CTG---AT------ACTT--AT-----------------------A---T----A-AAT--TAT-ATTT-TAC---------A-AC--------AC-AA-AAGTA-AGAAG-GACAATACACTG-CAAATC-TA---ATTCTG-CTT-TAGT-CATGGATGTATGACAACA---GTGTT-CAAA-TGCTGACA-AAT-GAGATTGATGACCAATAGAAATTAATTCTATCGGC--TTTCGTTACA--------GCTA-TTG
gi|5 : GG-AAATTCCCCAG---TAACCGTCAATAACTAGTGAACAATCCA-CTGGGAAAATTCGTGACATGCATTGGAAA---GATCGGTGCTG-ATGC----------------CTG---G-ATTCAAGAACTTTGAACATTT-ATTCA-AGCG-ACCAA--TCTGAC-ATTCCATTGGTATGACTGCT--TGAGATTG-AAA------TATATA---AAT-TAAATTC----A--TAT-A-A-----TGT---ACATA----AACCAA-----AACACGGAGGATTCCAAATAAATCC-AGAGAATTCATTTG-ACAAATGGGAAATCATG-GGCATTT-AGG-GTAC------ACTG--AT-----------------------A-TGC----G-GGTA-T-C-ATGT-TAC---------
gi|6 : accaaaattttttaattatcaacttttttttggtcttcaaaacaggtattggatctctaatctggctgAAATAC----ACGTAT-A-T-----TGT---ACATATACAAACCAA-----AATA--GAGGATT-CAAATAACTTT-AGAAAGTTAA-TTG-ACAAAT-AGAA-TCAAG-GCATTCA-GT---TAC------ACTA--ATAAAATTTTACCATGTTACTGCTTA-T-TGTTGA-AGTA-CAGGATAT-TA----------ATAA--------ACAAATAAGT--AGAAGAAACAATACGCCG-AAAATCACC---ATTCTG-TTTCTAAT-C--------ATAATAATA---GCGT------------------------TTGATGACCAACAGAAACTAATT-GAAATGTGA-TTCATTACAAATATTGGGCCAGTTGTTTAGGGAACCTGCtgctatcaattttgcaattctaata
gi|8 : tgtgaaatccAGGATATAAGGACAC-GCTTG-ATACAAGAACTATGA-CATT--ATTTTGGGCGGAC-CATACCTGAC-ATTCATTTGGTATGACT-CT--TGAGGTC--A--------TATAT----GAT-TAAATTT----A--TATCA-A-----TA----ATA-A----AACCAATTTTGAAAGC-AGATATT-CAAAT-AAT----GCGAAATCA-TTGAACAAAT-G--AAGCAAG-GCAATTT-agattcttgaagtaagcctgtacaagtaatactagttctaaagaatatagttattttggcag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TCTTGTGTAGGTTAGAACTTTAGAGTAGGGTTACTTTCAGGCGTATTGCTCCCCCGCCAGACGGGGGTGTCCAGCAAATACAGCTTGATCTTGTGTAAGTTAGAAACTTTAGCTAGAGTAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAATTCAAATAAAGTTTTATTTATGTTTGATTATCTGCCTAATGCATTATCTATTCTTTTGATCCTAATTCCATATACAAAAATCAAATTTAACATTATCTTATTTATTGTAAACCACAGATTTTTTTTAACCTATG
Unaligned ( gi|9 ): CAGCAGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGCGGGGCGGGGCATAGTTTTTGGACTGCCAAATCAAACTTTCAGTTACTTTGCTGCCTTATTTGATTGATGTTATCAACAGTTGTCACTATATTGGATTCATGATATAATACAACAAAAATTGAATGATAGCTAAATAATCTTTCTTGTTAT
Unaligned ( gi|15 ): CATCGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTAACAGCTCTTTCTCAAATTAGTCTTATATTTACC