lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 111 111111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 11 11 2222 111 1111111 1111 1 11 2222222 1 33333333333333333333333333333333333333333333333333333333333333333 222 222 1 33 1 111 77777777777777777 1 1 4 1 1 111 666666 4 5555555555555555555555555555555555555 4444444444 222222 1 666666666666666666666666666666666666666666666666 11
lowQualScore : 888 0 5 444444 888 0000 3 5 6 0 2 6 99 6 2 1 99 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 00 1 5 55 5 5 99 2222 6 5 1 111 6666666 3333 1 0 33 3333333 2 0 11111111111111111111111111111111111111111111111111111111111111111 444 111 3 3 0 0 9 0 0 0 00 8 6 444 66666666666666666 0 1 0 2 0 0 0 9 3 111 2 666666 0 9 5555555555555555555555555555555555555 2222222222 888888 6 4 4 0 2 666666666666666666666666666666666666666666666666 77
lowQualScore : ... . . ...... ... .... . . . . . . .. . . . .. .................................................................................................. .... .. . . .. . . .. .... . . . ... ....... .... . . .. ....... . . ................................................................. ... ... . . . . . . . . .. . . ... ................. . . . . . . . . . ... . ...... . . ..................................... .......... ...... . . . . . ................................................ ..
lowQualScore : 888 7 7 444444 888 6666 4 0 0 3 2 7 22 7 5 0 22 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 33 0 7 44 7 7 22 0000 7 2 7 777 8888888 7777 0 0 88 0000000 0 0 77777777777777777777777777777777777777777777777777777777777777777 888 222 5 0 2 2 0 2 2 5 00 0 0 000 88888888888888888 0 0 0 5 0 0 2 5 0 000 5 000000 0 2 4444444444444444444444444444444444444 0000000000 888888 0 0 2 0 5 222222222222222222222222222222222222222222222222 22
consensus : TTAATGCCGGTTTATCAA--TATGGATAAACCATG-TTA------TTT---CATGCATATA----GTC-TTAGTAATTAG-GTAA--AG-AACGACAAC--TCTTAAA-AG---TNA-----TCATA-NA--A---NCN----CTTCT------TATTT----AAAACAAAC-TACA-AT------A-AT---NCCCC--C---TTCTTA----TCGCTTCC-GAGCA-TGCGCGTCATTCACTT-CC-TTTN-CGN---CT-CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-----TTATGCTTCATAGGAAAAATGCAGAGCTTT-AAGCT-TCGT-AG-AAAA-AATGCTG-A-GGGCAAAAAT-TCAACGAGCTTCAAAGTCAAGAAGCCCGTATTCTAC-ACAGCCGGCCT-CCCGAC---GTGTGTCTTCAAAAA-GTGT------ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCACG-TCGGGGCAGTCTCCGTTGGCTGATAGGCNTTCAGCTNA-TGATCC--ACCCATCGCTGCAGTCAACACAA---AACA-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCC-AGCCATACCCTTTG------TCCCAGNTAATGCCGGCG-CCGATCTCGGA--C--GAAACGGAAA--CGGAGATGC---ACAACTTCC-TCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( gi|3 ) : TTAATGCCGGTTTATCAT--TATGGATAAACCATG-TTA------TTT---CATGCATATA----GTC-TCAGTAATCAG-GTAA--AG-AACGACAAC--TCTTAAA-AG---TTA-----TCATA-AA--A---ACA----CTACA------TATTC----AAAAAAAAC-TACA-AT------A-AT---ACCCC--C---TACTTA----TCGCTTCC-GAGCA-TGCGCGTCATCAACTT-CC-TTTC-TGC---CT-CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAAT-AAGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGT-AAGCTGTCAT-AG-AAAA-AATGCAG-A-GGGCAAAA-T-TCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCT-CC-GAC---GTGTGTCTT---AAA-GTG-------ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCACG-TCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAA---AACTCCTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-C-AGCT---CCCTTTG------TTCCAGTTAATGCCGGCG-CCGATCTCGGA--C--GGAACGAAAAATCAAGAATGCCCAACAACTT-C-TGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|18 : TTAATGCCGGTTTATCAA--TATAGATAAACCATG-TTA------TTT---TATGCACATA----GTC-TTA
gi|7 : TAATGCCGGTTTATTAA--TATGGATAAACCATG-TTACATGTATTA---CATGCATATA----GGC-TTAATAATTAG-GTAA--AG-AACGACAAC--TCTTAAA-CG---TAA-----TCATA-CATCACCCACC----CTTCT------CATTT----GAAACAAAC-TACA-AT------ACACCC-ACCCC--C---CCTTTA----TCGCTTCT-GAGCA-TGCGTGTCATTCACTT-CC-TTTC-TGG---CT-CAGCATACAATCTTGATACAAGAAAAA--A----AA-A--TTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAAT-AAACTT-----TTATGCTTCATAGGAAAAATGCAGAG------AGC----------AAAA-AA-----------------T-TCAACGACCTTCAAAGTCAATAAGCCCGTATTCTA-CACAGTCGGCCTCCC-GAC---GTGTGTCTT---CAA-----------AACAGCTCGGGGGAGAGCGGGCCATGATGagttagtaacaaga
gi|4 : taTATTGCCGGTTTATCAA--TATGGATAAACCATG-TTA------TTT---CATGCATATA----GTC-TTAAAAATTAG-GTAA--CG-AACGACAAC--TCCTAAA-AG---TAA-----TCATA-CATCG---CCACCCCCTTCT------TCTTT----AAAACAAAC-------T------A-AT---CCCCC--C---TTCTTA----TCGCTTCC-GAGCA-TGCGCGTCATCCACTT-CC-TTTc
gi|8 : aTTTATCACAATATGAATAAACCATG-TTG------CTT---CATGGATATG----GTC-TTAACATACGG-G-AA--AG-AAATATAAT--TCTTAACTAA---TTG-----T-ATA-TG--T---ACG----C--CC------TATCC----ATTACAAGC-GACATATCTTATCA-AT---AACCCTTC---TTCATA----TTACTTC----GT----CGTATTAT----TT-CA-TTTA-CGT---TT-CAGCGTTTAACTTT--TGTACG---GACCA----AC-C--TTATTGAATTGattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|12 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaAT--TATGGAT-AACGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGTG-GTAAATAG-AA-GA-AACATTCTTGAA-AGAAATAA-----TCACA-TA--A---TCC----C--CC------TCTTCTTTTTAACAAAAC-T-CA-AT------A-A----ATTCC--T---T-CTTATAATTCGCTACC-GA-CA-TGCGATTCATTCACTT-CCTTTTC-TGG---CT-AAGCAT-CAG--TTGATACACG---GA--G----AA-A--ATAtgcgacataaacgttgtttaaacaaatgttaagccggcgcgaaaatattgccgatggcaaa
gi|6 : atatgttttccttatcaaattg--TATGGATAAAC-ATG-TTA------TTT---CATGCATATA----GTCTTTAGTAATCAGCGTAA--AGAAACGACAAC--T-TTAAA-AG---TTA------CAC--AC--A---CCC----CTTCT------TATTA----AAATCAAACTTACA-AT------A-ATTCCCCCCC--C---TTCTTA----TCGCTTCCAGAGCATTGCGCATCATCAACTTCCC-TTTCGTGCT--CTCCCGCATCCAATCCTGATACACG---GA--A----AACAATTTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAAAGCTTat
gi|21 : ATAAACCATG-TTA------TTT---CATGCATATA----GTC-ttaagctatcattagaaaaaatactgcatgggcaaaaattcaacccttaatctacacagccggcctcccgcacggtgtgtctttaaagtatatttacattagctcggggagagctggccatgatgtcggaatgcaggtcacggtcgggacagtctccgttggctaatagtcattcagcttattgatccactatcgctgcagtcaacacaagcaatatgca
gi|5 : TA------TTT---CATGCATATACAAAAAC-TTAGCAATTAG-TTAA--AG-AACGACAAC--TCATA--------TCGCCCCTTCGTATAA--A---ACAAA--CTACAANGATATATTT----AGAA----C-TACC-A-------A-AT---GGTCA--AGAGTANNNN----NNNNNNNN-NNNNN-NNNNNNNNNNNNNNNN-NN-NNTA-TGCTGGCT-CAGCATCCAATCCTGATACACG---GA--A----AA-AA-TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT
gi|16 : ------A-AT---CCCCC--C---T-CTCA----TTGCTCCA-AAACA-TGCACGTTAATTATTT-CC-TTTG-CGT---CT-CAACATCTAATCTTGGTACACG---CA--AAAAGAA-A--TTATCttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|4 : -A--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTATAAAAT-AAGCTT
gi|6 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttTAAAGCTTTTAAGCTATCATTAG-AAAA-AATACTGCATGGGCAAAAAT-TCAAC--------------------CCTTAATCTAC-ACAGCCGGCCT-CC-CGCACGGTGTGTCTTT--AAA-GTATATTTACATTAGCTCGGGG-AGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACACAA---taagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|4 : tatggataaacatgttatttcatgcatatagtctttagtaatcagcgtaaagaaacgacaactttaaaagttacacacaccccttcttattaaaatcaaacttacaataattccccccccttcttatcgcttccagagcattgcgcatcatcaacttccctttcgtgctctcccgcatccaatcctgatacacggaaaacaatttatcggagtgatcaaaatctgccataacatcgactctgtctcatgacaAGCTTT-AAGTT-TCGT-AG-AAAATAATGCTG-A-GGGCAAAAAC-TCAACGAGCTTCCAAGTCAAGAAGTCCATTTTCCAC-ACAGCCGGCCT-CCCGAC---GTGTGTCATCAAAAA-GTGT------GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAGG-TCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--ACC-ATCACTGCAGTCAACCCAACCAAA-----GGCAGAACC-------GATCCA-ACAGATCTACAGG-CCAGCCATACCCTTGGCCTCACTCCCAGTTAATGCCGGCG-CCGATCTAGGGCCC--GAAACGGA--------AATG-CCAACTTCCT-C-TG--GGGC-ATCAATCAATCAAGGTACGGATACTAAgcaatatgca
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataT-AAGCT--CAT-AGGAAAA-AATG----A-GGGCAAAA-TCTCAACGAGCATCAAAATTAAGAAGCCCGTATTCTAC-ATAGTCGGTCT-CCCGAC---GTGCATCTCCA-AAACGTGT------ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCACG-TCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAAC-CCA---AGCAGATG-CAGAACCTT-------TTCA-ACATATCAACATGCC-AGCtta
gi|9 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttt-CC-GAT---GTGTGTCTTCAAAAA-GTGT------ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCACG-TCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGAT-TCA--TCATCGCTGCAGTCAACAC-A---AACATATG-CAGAACTT-------ATTCA-ACAGATCAACATACC-AGCCATACCCTTTG------TCCCAGATAATGCTGGCG-CCGATCTCGGA--C------CGGAAA--CGGAGATGC----CAACTTCC-TCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAAcat
gi|2 : c---CCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGA--CCGGAAACGAA---TCAG--ATGC---ACAACTT-CCTGACA-----TCAATCAATCAAGGTACGAGTGCTAAttt
gi|1 : ccaaccaata---CCCTTTG------TCCCAGATAATGCTGGCG-CCGATCTCGGA--C------CGGAAA--CGGAGATGC----CAACTTCC-TCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAAtttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222 111111 111 33333333333333333333 111111111111 1111 111 111 1111111 11 11 11111 77777777777777777777777777777777777777777777777777777777777777777777777777 11111 2222 1 111 1 3333333 1 222222 6666 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 0 3 000 3 33333333333333333333 0 1 0 888 5 999999999999 5 9999 77 1 2222 5 3 5 5 1 1 5 66 000 3 0 000 3333333 5 11 8 11 66666 00000000000000000000000000000000000000000000000000000000000000000000000000 5 5 3 0 5 8 1 8 4 2 1 7 77777 3 8 8 3 1 1 8 5555 6 5 5 1 999 0 2222222 0 6 333333 1 1 8 3333 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . . ... . .................... . . . ... . ............ . .... .. . .... . . . . . . . .. ... . . ... ....... . .. . .. ..... .......................................................................... . . . . . . . . . . . . ..... . . . . . . . .... . . . . ... . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 7 6 000 0 66666666666666666666 3 4 7 666 7 888888888888 0 8888 99 7 1111 7 0 7 7 7 0 7 77 000 0 1 000 1111111 0 99 0 00 00000 44444444444444444444444444444444444444444444444444444444444444444444444444 0 6 2 8 0 0 0 0 6 5 0 5 33333 7 0 0 2 0 0 0 2222 4 6 4 8 888 0 5555555 0 7 000000 0 4 0 6666 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TAATCATACA-----A-CCC---C----TTCTTATTTAAAACAAAC-TACA-AT------A-----A-T---CCCCC--CTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATGAAAT-AAGCTT-----TTA-GCT-TCA-TAGGAAAAATACAGAGCTTT-AAGCT-TCGTAGAAAA-AATGC-TGAGGGCAAAAATTCAACGAGCTTCAAAGTCAANA-AGCCCGTATTCTA-CACAGTCGGCCTCCCGACGTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--A-CCATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGCG-CCGATCTCGGAC----CGGAAA--CGGA---GATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TNATCATANA-----A-NCN---C----TTCTTATTTAAAACAAAC-TACA-AT------A-----A-T---NCCCC--CTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-TCACTTCCTTTNC-G-NCT---CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-----TTATGCT-TCA-TAGGAAAAATGCAGAGCTTT-AAGCT-TCGTAGAAAA-AATGC-TGAGGGCAAAAATTCAACGAGCTTCAAAGTCAAGA-AGCCCGTATTCTA-CACAGCCGGCCTCCCGACGTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCNTTCAGCTNA-TGATCC--ACCCATCGCTGCAGTCAACACAAAAC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGNTAATGCCGGCG-CCGATCTCGGACGAAACGGAAA--CGGA---GATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGCG-CCGATCTCGGAC----CGGAAA--CGGA---GATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAATAATCACATA-----A-TCC---CCCTCTTCTT-TTTAACA-AAAC-T-CA-AT------A-----AAT---TCC-----TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACG---GA--G----AA-A--ATAtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttcc------A-----A-T---CCCCC--CT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACG---CA--AAAAGAA-A--TTATCat
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TTATCATAAA-----A-ACA---C----TACATATTCAAAAAAAAC-TACA-AT------A-----A-T---ACCCC--CTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAAT-AAGCTTGNNNNNNNNNNN-NNN-NNNNNNNNNNNTAGAGCTGT-AAGCTGTCATAGAAAA-AATGC-AGAGGGC-AAAATTCAACGGACTTCAAAGTCAATA-AGCCCGTAATCTACCACAGTCGGCCT-CCGACGTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGCG-CCGATCTCGGACGGAACGAAAAATCAAG---AATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAG---TAATCATACATCGCCACCCC---C----TTCTTCTTTAAAACAAAC-------T------A-----A-T---CCCCC--CTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : a-A--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTAT----------------------------------AAAATA---AGCTTT-AAGTT-TCGTAGAAAATAATGC-TGAGGGCAAAAACTCAACGAGCTTCCAAGTCAAGA-AGTCCATTTTCCA-CACAGCCGGCCTCCCGACGTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--A-CCATCACTGCAGTCAACCCAACCA-A-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGCG-CCGATCTAGGGC----CCGAAA--CGGA---AATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC-----------------TCATATC-----G-CCC---C----TTCGTA--TAAAACAAAC-TACA-AN------G-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACG---GA--A----AA-AA-TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCAT----------------------------------AAAATA---AGCTTTTAAGCT--CATAGGAAA-AA--A-TGAGGGCAAAATCTCAACGAGCATCAAAATTAAGA-AGCCCGTATTCTA-CATAGTCGGTCTCCCGACGTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--A-CCATCACTGCGGTAAAC-CCAAGC-AGATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---TTA-CACAC------A-CCC---C----TTCTTATTAAAATCAAACTTACA-AT------A-----A-TTCCCCCCC--CTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACG---GA--A----AACAATTTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAAAGCTT-----TTAAGCTATCATTAGAAAAAATAC----------------------------TGCATGGG--CAAAAATTCAAC---CCTTAA--TCTACACAGCCGGCCTCCCG-CACG--------------GTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--A-CTATCGCTGCAGTCAACAC-AAGC-A-AT
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACG---TAATCATACATC---A-CCCACCC----TTCTCATTTGAAACAAAC-TACA-AT------ACACCCA-C---CCCCC--CTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAAAAA--A----AA-A--TTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAAT-AAACTT-----TTATGCT-TCA-TAGGAAAAATGCAGAG------AGC--------AA-----------------AAAATTCAACGACCTTCAAAGTCAATA-AGCCCGTATTCTA-CACAGTCGGCCTCCCGACGTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATGatgca
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AAC---TAATTGTATA-----T-GTA---C----GCCCTATCCATTACAAGC-GACATATCTTATCA-----A-T---AACCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACG---GACCA----AC-C--TTATTGAATTGc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCGATGTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--ATC-ATCGCTGCAGTCAACAC-AAAC-ATATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGCG-CCGATCTCGGAC----CGGAAA--CGGA---GATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAAtgcgacataaacgttgtttaaacaaatgttaagccggcgcgaaaatattgccgatggcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 222222222 111111 111 333333333 111 222222222 11111111111 1111 111 111 1111111 11 11 11111 999999999999999999999999999999999999999 2222222 11111111 11111 11 22222 1 3333333 1 222222 1111 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 0 3 000 1 888888888 5 000 0 00 5 111111111 66666666666 1 2222 5 3 5 666 1 5 66 000 3 0 000 3333333 5 11 8 11 66666 6 0 222222222222222222222222222222222222222 5555555 0 8 66666666 6 3 1 0 3 1 8 6 6 1 7 77777 3 8 8 1 0 1 8 11 8 5 5 33333 0 2222222 0 6 333333 1 1 8 7777 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . . ... . ......... . ... . .. . ......... ........... . .... . . . ... . . .. ... . . ... ....... . .. . .. ..... . . ....................................... ....... . . ........ . . . . . . . . . . . ..... . . . . . . . .. . . . ..... . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 7 6 000 9 666666666 7 000 3 99 7 666666666 22222222222 7 1111 7 0 7 666 0 7 44 000 0 1 000 1111111 0 99 0 00 00000 4 6 444444444444444444444444444444444444444 8888888 8 0 66666666 0 2 0 6 8 4 0 7 7 0 5 33333 7 0 0 0 6 0 0 00 0 6 6 00000 0 5555555 0 7 000000 4 4 0 0000 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TAATCATACAT----A-C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATGAAATAA-CTT--------A-GCTT-------AAAATG-AGAGCTTTAAGCT-TCAT-AGAAAA-AATGCTG-A-GGGCAAAAATTCAACGAGCTTCAAAGTCAANAAGCCCGTATTCTAC-ACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TAATCATACA-----A-C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATGAAATAAGCTT------TTA-GCTTCATAGGAAAAATACAGAGCTTTAAGCT-TCGT-AGAAAA-AATGCTG-A-GGGCAAAAATTCAACGAGCTTCAAAGTCAANAAGCCCGTATTCTAC-ACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAATAATCACATA-----ATC-CC---CCTCTTCTTTTTAACAAAAC-T-------CAATA-----AAT---TCC---TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACG---GA--G----AA-A--ATAtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttccA-----A-T---CCCCCCT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACG---CA--AAAAGAA-A--TTATCat
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TTATCATAAA-----A-A-CA---CTACATATTCAAAAAAAA-C-TA------CAATA-----A-T---ACCCCCTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACG---GA--A----AA-A--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAATAAGCTTGNNNNNNNN-NNNNNNNNNNNNNNNNNTAGAGCTGTAAGCTGTCAT-AGAAAA-AATGCAG-A-GGGCAAAA-TTCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCTCC-G-AC-GTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGC-GCCGATCTCGGACGGAACGAAAAATCAA---GAATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAG---TAATCATACATCGCCACC-CC---CTTCTTCTTTAAAACAAA-C------------TA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : a-A--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTAT--------------------------------AAAATA---AGCTTTAAGTT-TCGT-AGAAAATAATGCTG-A-GGGCAAAAACTCAACGAGCTTCCAAGTCAAGAAGTCCATTTTCCAC-ACAGCCGGCCTCCCG-AC-GTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--AC-CATCACTGCAGTCAACCCAACCA-A-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGC-GCCGATCTAGGGC----CCGAAA--CGG---AAATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC-----------------TCATATC-----G-C-CC---CTTCGTA--TAAAACAAA-C-TA------CAANG-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACG---GA--A----AA-AA-TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAATAA--------------GCTT--------------------TTAAGCT--CAT-AGGAAA-AA--ATG-A-GGGCAAAATCTCAACGAGCATCAAAATTAAGAAGCCCGTATTCTAC-ATAGTCGGTCTCCCG-AC-GTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAAC-CCAAGC-AGATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---TTA-CACAC------A-C-CC---CTTCTTATTAAAATCAAA-CTTA------CAATA-----A-TTCCCCCCCCTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACG---GA--A----AACAATTTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAA------------A-GCT--------------------TTTAAGCTATCATTAGAAAA-AATACTGCATGGGCAAAAATTCAA--------------------CCCTTAATCTAC-ACAGCCGGCCTCCCGCACGGTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACAC-AAGC-A-AT
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACG---TAATCATACATC---A-C-CCACCCTTCTCATTTGAAACAAA-C-TA------CAATACACCCA-C---CCCCCCTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAAAAA--A----AA-A--TTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAATAAACTT------TTATGCTTCATAGGAAAAATGCAGAG-----AGC---------AA------------------AAAATTCAACGACCTTCAAAGTCAATAAGCCCGTATTCTAC-ACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATGatgca
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AAC---TAATTGTATATGT--A-CGCC---CTATCCATTACAAGCGAC-A-TATCTTATCAATA-----A-----CCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACG---GACCA----AC-C--TTATTGAATTGc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCG-AT-GTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--AT-CATCGCTGCAGTCAACACAAA-C-ATATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAAtgcgacataaacgttgtttaaacaaatgttaagccggcgcgaaaatattgccgatggcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 2222222222222222222222222222222222222
lowQualScore : 222222222 111111 22222222 111 222222222 11111111111 1111 111 1111111 222 11 11111 4444444444444444444444444444444444444 11 11111 11 22222 1 3333333 1 222222 1111 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 7 66 77 5 88888888 5 000 0 00 5 111111111 66666666666 1 2222 5 3 5 666 1 5 66 000 3 0 3333333 5 000 8 11 66666 7777777777777777777777777777777777777 66 8 8 0 1 8 8 0 8 3 1 0 3 1 8 6 6 1 7 77777 3 8 8 1 0 1 8 11 8 5 5 33333 0 2222222 0 6 333333 1 1 8 7777 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . .. .. . ........ . ... . .. . ......... ........... . .... . . . ... . . .. ... . . ....... . ... . .. ..... ..................................... .. . . . . . . . . . . . . . . . . . . ..... . . . . . . . .. . . . ..... . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 1 77 99 7 11111111 7 000 3 99 7 666666666 22222222222 7 1111 7 0 7 666 0 7 44 000 0 1 1111111 0 666 0 00 00000 0000000000000000000000000000000000000 88 0 0 8 4 0 0 8 0 2 0 6 8 4 0 7 7 0 5 33333 7 0 0 0 6 0 0 00 0 6 6 00000 0 5555555 0 7 000000 4 4 0 0000 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA--A----AA-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAATAA-----GCTT-------------------------GCTTTAAGCT-TCA-TAGAAAA-AATGCTG-A-GGGCAAAA-ATTCAACGAGCTTCAAAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA--A----AA-A---TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATGAAATAA-CTTAGCTTAAAATG----------------AGAGCTTTAAGCT-TCA-TAGAAAA-AATGCTG-A-GGGCAAAA-ATTCAACGAGCTTCAAAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAAT--AATCACAT----AATC-CC---CCTCTTCTTTTTAACAAAAC-T-------CAATA-----AAT---TCC---TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACGGA--G----AA-A---ATAtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttccA-----A-T---CCCCCCT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACGCA--AAAAGAA-A---TTATCat
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTTAT--CAT-AAA-----A--A-CA---CTACATATTCAAAAAAAA-C-TA------CAATA-----A-T---ACCCCCTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACGGA--A----AA-A---TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAATAAGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTAAGCTGTCA-TAGAAAA-AATGCAG-A-GGGC-AAA-ATTCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCT-CCG-AC-GTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGC-GCCGATCTCGGACGGAACGAAAAATCAA---GAATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAGTAAT--CAT-ACATCGCCAC-C-CC---CTTCTTCTTTAAAACAAA-C------------TA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : a-A---TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTATAAAATAA----------------------------------GCTTTAAGTT-TCG-TAGAAAATAATGCTG-A-GGGCAAAA-ACTCAACGAGCTTCCAAGTCAAGAAGTCCATTTTCCA-CACAGCCGGCCTCCCG-AC-GTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--AC-CATCACTGCAGTCAACCCAACCA-A-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGC-GCCGATCTAGGGC----CCGAAA--CGG---AAATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC--TCAT-------AT--C-----------G--C-CC---CTTCGTA--TAAAACAAA-C-TA------CAANG-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACGGA--A----AA-AA--TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAATAA-----GCTT----------------------------TTAAGCT--CA-TAGGAAA-AA--ATG-A-GGGCAAAA-TCTCAACGAGCATCAAAATTAAGAAGCCCGTATTCTA-CATAGTCGGTCTCCCG-AC-GTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAAC-CCAAGC-AGATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---T--TAC-ACAC----A--C-CC---CTTCTTATTAAAATCAAA-CTTA------CAATA-----A-TTCCCCCCCCTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACGGA--A----AACAAT-TTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAA----AGCT----------------------------TTTAAGCTATCATTAGAAAA-AATACTGCATGGGCAAAA-ATTCAA--------------------CCCTTAATCTA-CACAGCCGGCCTCCCGCACGGTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACAC-AAGC-A-AT
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACGTAAT--CAT-ACATC---A--C-CCACCCTTCTCATTTGAAACAAA-C-TA------CAATACACCCA-C---CCCCCCTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAA--A----AA-AAAATTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAATAA-----ACTT----------------------------TTATGCT-TCA-TAGGAAA-AATGCAG-A-GAGCAAAAAATTCAACGACCTTCAAAGTCAATAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATGatgca
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AACTAATTGTAT-ATGT----A--CGCC---CTATCCATTACAAGCGAC-A-TATCTTATCAATA-----A-----CCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACGGACCA----AC-C---TTATTGAATTGc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCG-AT-GTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--AT-CATCGCTGCAGTCAACACAAA-C-ATATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAAtgcgacataaacgttgtttaaacaaatgttaagccggcgcgaaaatattgccgatggcaaa
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 222222222 111111 22222222 111 222222222 11111111111 1111 111 111 11 11111 444 11 5555555555555555555555555555555555555 11111 11 22222 1 3333333 1 222222 1111 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 7 66 77 5 88888888 5 000 0 00 5 111111111 66666666666 1 2222 5 3 5 666 1 5 66 000 3 0 5 000 5 11 6 99 11111 1 6 444 88 6 6 0 6 6 6666666666666666666666666666666666666 3 1 0 3 1 8 6 6 1 7 77777 3 8 8 1 0 1 8 11 8 5 5 33333 0 2222222 0 6 333333 1 1 8 7777 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . .. .. . ........ . ... . .. . ......... ........... . .... . . . ... . . .. ... . . . ... . .. . .. ..... . . ... .. . . . . . ..................................... . . . . . . . . . . ..... . . . . . . . .. . . . ..... . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 1 77 99 7 11111111 7 000 3 99 7 666666666 22222222222 7 1111 7 0 7 666 0 7 44 000 0 1 7 000 7 99 7 22 88888 0 7 777 22 7 7 8 7 7 4444444444444444444444444444444444444 2 0 6 8 4 0 7 7 0 5 33333 7 0 0 0 6 0 0 00 0 6 6 00000 0 5555555 0 7 000000 4 4 0 0000 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT---TTAAGCT-TCG-TAGAAAA-AATGCTG-A-GGGC----------------AAAA-AT--------------TCAACGAGCTTCAAAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTTGCTTTAAGCT-TCA-TAGAAAA-AATGCTG-A-GGGC----------------AAAA-AT--------------TCAACGAGCTTCAAAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAAT--AATCACAT----AATC-CC---CCTCTTCTTTTTAACAAAAC-T-------CAATA-----AAT---TCC---TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACGGA-GA---A-AA--TAATtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttccA-----A-T---CCCCCCT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACGCA-AAAAGA-AA--TTATC
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTTAT--CAT-AAA-----A--A-CA---CTACATATTCAAAAAAAA-C-TA------CAATA-----A-T---ACCCCCTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACGG--AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAAT-AAGCTTGNNNNNNNNN-NNN-NNNNNNN-NNNNNNT-A-GAGCTGTAAGCTGTCATAGAAAAA-ATGCAGAGGGCAAAATTCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCT-CCG-AC-GTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGC-GCCGATCTCGGACGGAACGAAAAATCAA---GAATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAGTAAT--CAT-ACATCGCCAC-C-CC---CTTCTTCTTTAAAACAAA-C------------TA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : aA--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTATAAAAT-AAGCTT----TAAGTT-TCG-TAGAAAATAATGCTG-A-GGGC----------------AAAA-AC--------------TCAACGAGCTTCCAAGTCAAGAAGTCCATTTTCCA-CACAGCCGGCCTCCCG-AC-GTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--AC-CATCACTGCAGTCAACCCAACCA-A-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGC-GCCGATCTAGGGC----CCGAAA--CGG---AAATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC--TCAT-------AT--C-----------G--C-CC---CTTCGTA--TAAAACAAA-C-TA------CAANG-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACGGA-AA---A-AA--TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT---TTAAGCT--CA-TAGGAAA-AA--ATG-A-GGGC----------------AAAA-TC--------------TCAACGAGCATCAAAATTAAGAAGCCCGTATTCTA-CATAGTCGGTCTCCCG-AC-GTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAAC-CCAAGC-AGATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---T--TAC-ACAC----A--C-CC---CTTCTTATTAAAATCAAA-CTTA------CAATA-----A-TTCCCCCCCCTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACGGA-AA---ACAAT-TTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAAAGCT---TTTAAGCTATCATTAGAAAA-AATACTGCATGGGC----------------AAAA-AT--------------TCAA--------------------CCCTTAATCTA-CACAGCCGGCCTCCCGCACGGTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACAC-AAGC-A-AT
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACGTAAT--CAT-ACATC---A--C-CCACCCTTCTCATTTGAAACAAA-C-TA------CAATACACCCA-C---CCCCCCTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAA-AA---A-AAAATTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAAT-AAACTT---TTATGCT-TCA-TAGGAAA-AATGCAG-A-GAGC----------------AAAAAAT--------------TCAACGACCTTCAAAGTCAATAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATGatgca
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AACTAATTGTAT-ATGT----A--CGCC---CTATCCATTACAAGCGAC-A-TATCTTATCAATA-----A-----CCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACGGACCA---A-CC--TTATTGAATTG---------TG-C--GACATAAACGT---T-GTTT----AAAC-AAA--TG--TTAAGCCGGCG-CGAAAAT-ATTGCCG-A-TGGC----------------AAAc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCG-AT-GTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--AT-CATCGCTGCAGTCAACACAAA-C-ATATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 222222222 111111 22222222 111 222222222 11111111111 1111 111 111 11 11111 2222222 11 111 222222222 444444444444444444 11111 11 22222 1 3333333 1 222222 1111 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 7 66 77 5 88888888 5 000 0 00 5 111111111 66666666666 1 2222 5 3 5 666 1 5 66 000 3 0 5 000 5 11 6 99 11111 1 6 1111111 0 88 6 6 111 888 666666666 8 5 444444444444444444 3 1 8 6 6 1 7 77777 3 8 8 1 0 1 8 11 8 5 5 33333 0 2222222 0 6 333333 1 1 8 7777 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . .. .. . ........ . ... . .. . ......... ........... . .... . . . ... . . .. ... . . . ... . .. . .. ..... . . ....... . .. . . ... ... ......... . . .................. . . . . . . . ..... . . . . . . . .. . . . ..... . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 1 77 99 7 11111111 7 000 3 99 7 666666666 22222222222 7 1111 7 0 7 666 0 7 44 000 0 1 7 000 7 99 7 22 88888 0 7 7777777 8 22 7 7 777 777 777777777 0 0 444444444444444444 8 4 0 7 7 0 5 33333 7 0 0 0 6 0 0 00 0 6 6 00000 0 5555555 0 7 000000 4 4 0 0000 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAAT--AATCACAT----AATC-CC---CCTCTTCTTTTTAACAAAAC-T-------CAATA-----AAT---TCC---TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACGGA-GA---A-AA--TAATtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttccA-----A-T---CCCCCCT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACGCA-AAAAGA-AA--TTATC
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTTAT--CAT-AAA-----A--A-CA---CTACATATTCAAAAAAAA-C-TA------CAATA-----A-T---ACCCCCTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACGG--AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAAT-AAGCTTGNNNNNNNNNNNNN-NNN-NNNNNNN-NNTAGAGCTG-T-AAGCTGTCATAGAAAAA-ATGCAGAGGGCAAAATTCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCT-CCG-AC-GTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGC-GCCGATCTCGGACGGAACGAAAAATCAA---GAATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAGTAAT--CAT-ACATCGCCAC-C-CC---CTTCTTCTTTAAAACAAA-C------------TA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : aA--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTATAAAAT-AAGCTT-------T-AAGTT-TCG-TAGAAAATAAT---GCTG-A-GGGC---------AAAA-ACTCAACGAGC----TTCC----------AAGTCAAGAAGTCCATTTTCCA-CACAGCCGGCCTCCCG-AC-GTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--AC-CATCACTGCAGTCAACCCAACCA-A-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGC-GCCGATCTAGGGC----CCGAAA--CGG---AAATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC--TCAT-------AT--C-----------G--C-CC---CTTCGTA--TAAAACAAA-C-TA------CAANG-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACGGA-AA---A-AA--TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT--CA-TAGGAAA-AA-----ATG-A-GGGC---------AAAA-TCTCAACGAGC----ATCA----------AAATTAAGAAGCCCGTATTCTA-CATAGTCGGTCTCCCG-AC-GTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAAC-CCAAGC-AGATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---T--TAC-ACAC----A--C-CC---CTTCTTATTAAAATCAAA-CTTA------CAATA-----A-TTCCCCCCCCTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACGGA-AA---ACAAT-TTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAAAGCTT-------TTAAGCTATCATTAGAAAA-AAT---ACTGCATGGGC---------AAAA-ATTCAA----------------------------------CCCTTAATCTA-CACAGCCGGCCTCCCGCACGGTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACAC-AAGC-A-AT
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACGTAAT--CAT-ACATC---A--C-CCACCCTTCTCATTTGAAACAAA-C-TA------CAATACACCCA-C---CCCCCCTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAA-AA---A-AAAATTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAAT-AAACTT-------TTATGCT-TCA-TAGGAAA-AAT---GCAG-A-GAGC---------AAAAAATTCAACGACC----TTCA----------AAGTCAATAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATGatgca
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AACTAATTGTAT-ATGT----A--CGCC---CTATCCATTACAAGCGAC-A-TATCTTATCAATA-----A-----CCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACGGACCA---A-CC--TTATTGAATTG---------TG-C--GACATAAACGT---T-GTTT----AAAC-AAA-TG-------TTAAGCCGGCG-CGAAAAT-ATT---GCCG-A-TGGC---------AAAc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCG-AT-GTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--AT-CATCGCTGCAGTCAACACAAA-C-ATATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 222222222 111111 22222222 111 222222222 11111111111 1111 111 111 11 11111 2222222 11 111 222222222 444444444444444444 11111 11 22222 1 3333333 1 222222 1111 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 7 66 77 5 88888888 5 000 0 00 5 111111111 66666666666 1 2222 5 3 5 666 1 5 66 000 3 0 5 000 5 11 6 99 11111 1 6 1111111 0 88 6 6 111 888 666666666 8 5 444444444444444444 3 1 8 6 6 1 7 77777 3 8 8 1 0 1 8 11 8 5 5 33333 0 2222222 0 6 333333 1 1 8 7777 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . .. .. . ........ . ... . .. . ......... ........... . .... . . . ... . . .. ... . . . ... . .. . .. ..... . . ....... . .. . . ... ... ......... . . .................. . . . . . . . ..... . . . . . . . .. . . . ..... . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 1 77 99 7 11111111 7 000 3 99 7 666666666 22222222222 7 1111 7 0 7 666 0 7 44 000 0 1 7 000 7 99 7 22 88888 0 7 7777777 8 22 7 7 777 777 777777777 0 0 444444444444444444 8 4 0 7 7 0 5 33333 7 0 0 0 6 0 0 00 0 6 6 00000 0 5555555 0 7 000000 4 4 0 0000 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAAT--AATCACAT----AATC-CC---CCTCTTCTTTTTAACAAAAC-T-------CAATA-----AAT---TCC---TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACGGA-GA---A-AA--TAATtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttccA-----A-T---CCCCCCT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACGCA-AAAAGA-AA--TTATC
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTTAT--CAT-AAA-----A--A-CA---CTACATATTCAAAAAAAA-C-TA------CAATA-----A-T---ACCCCCTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACGG--AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAAT-AAGCTTGNNNNNNNNNNNNN-NNN-NNNNNNN-NNTAGAGCTG-T-AAGCTGTCATAGAAAAA-ATGCAGAGGGCAAAATTCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCT-CCG-AC-GTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGC-GCCGATCTCGGACGGAACGAAAAATCAA---GAATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAGTAAT--CAT-ACATCGCCAC-C-CC---CTTCTTCTTTAAAACAAA-C------------TA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : aA--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTATAAAAT-AAGCTT-------T-AAGTT-TCG-TAGAAAATAAT---GCTG-A-GGGC---------AAAA-ACTCAACGAGC----TTCC----------AAGTCAAGAAGTCCATTTTCCA-CACAGCCGGCCTCCCG-AC-GTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--AC-CATCACTGCAGTCAACCCAACCA-A-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGC-GCCGATCTAGGGC----CCGAAA--CGG---AAATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC--TCAT-------AT--C-----------G--C-CC---CTTCGTA--TAAAACAAA-C-TA------CAANG-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACGGA-AA---A-AA--TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT--CA-TAGGAAA-AA-----ATG-A-GGGC---------AAAA-TCTCAACGAGC----ATCA----------AAATTAAGAAGCCCGTATTCTA-CATAGTCGGTCTCCCG-AC-GTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAAC-CCAAGC-AGATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---T--TAC-ACAC----A--C-CC---CTTCTTATTAAAATCAAA-CTTA------CAATA-----A-TTCCCCCCCCTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACGGA-AA---ACAAT-TTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAAAGCTT-------TTAAGCTATCATTAGAAAA-AAT---ACTGCATGGGC---------AAAA-ATTCAA----------------------------------CCCTTAATCTA-CACAGCCGGCCTCCCGCACGGTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACAC-AAGC-A-AT
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACGTAAT--CAT-ACATC---A--C-CCACCCTTCTCATTTGAAACAAA-C-TA------CAATACACCCA-C---CCCCCCTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAA-AA---A-AAAATTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAAT-AAACTT-------TTATGCT-TCA-TAGGAAA-AAT---GCAG-A-GAGC---------AAAAAATTCAACGACC----TTCA----------AAGTCAATAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATGatgca
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AACTAATTGTAT-ATGT----A--CGCC---CTATCCATTACAAGCGAC-A-TATCTTATCAATA-----A-----CCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACGGACCA---A-CC--TTATTGAATTG---------TG-C--GACATAAACGT---T-GTTT----AAAC-AAA-TG-------TTAAGCCGGCG-CGAAAAT-ATT---GCCG-A-TGGC---------AAAc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCG-AT-GTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--AT-CATCGCTGCAGTCAACACAAA-C-ATATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
blockSeqs : CAA . CATGTA . CAAA T T GT GC . A . A TT TG . TCGCCAC G ACC . TATCTTAT CACCCAC A . A A T ATT G . TG CTC C C AAG C AA A AT AAATA T A . AT T T . CAT . A C TTCC G T . C G C A TTTAC A A G A G T . . C A GCAG . . . A CCTCAC T G G GGAA AT ATC CCAA GA A
blockSeqs : A . . . . T . AA CG . . . A TA . . TCA . . . TTA ATTCC T . . G . TT C . T . C . . . T . . C C . . GG . . . A . . C ATCA G T . . . C C T G . . G A . . . A C CAA . . . . . T C . . . . A CT .
blockSeqs : T . . . . T . GC G . . . A TA . . CA . . . TA AT T . . G . CA T . C . C . . . . . . T C . . T . . . A . . C TTCA T A . . . T T T T . . T T . . . A A GCA . . . . . T C . . . . . CG .
blockSeqs : A . . . . T . GT G . . . A TA . . TA . . . TA AT T . . G . CC C . G . C . . . . . . T C . . T . . . A . . . . . T . . . C A T G . . G T . . . . . CAT . . A T . . . . . . .
blockSeqs : A . . . . A . AT G . . . . . . . A . . . TA AT T . . G . CA A . G . A . . . . . . T . . . . . . . A . . . C . . A .
blockSeqs : . . . . T . AC G . . . . . . . G . . . . AT . . . . . TC . T . T . . . .
blockSeqs : . . . . G . . . A .
blockSeqs : . . . . T .
blockSeqCons : A******** *** ** ** TCG***** TA******* AT********* **** ******* *** ********* TTCA************** T**** ** CAA**
originalCons : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACAT----A--C-CC---CTTCTTATTTAAAACAAA-C-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAAGC-A-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
finalCons : TTAATGCCGGTTTATCAA--------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAGTAAT--CAT-ACATCG-----C-CC---CTTCTTATTTAAAACAAA-CTA-------CAATAAT---------CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGCTTCA--------------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACACAAACAA--ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT
Alignments
lowQualScore : 222222222 111111 111 33333333333 111 222222222 11111111111 1111 111 111 11 11111 2222222 11 111 222222222 444444444444444444 11111 11 11 3333333 1 222222 1111 11 111 3333
lowQualScore : 000000000 4 222222 777 9999 2 4 33 666 77 5 0 77 0 3 000 1 1 0 11111111111 555 5 1 0 0 111111111 66666666666 1 2222 5 3 5 666 1 5 66 000 3 0 5 000 5 11 6 99 11111 1 6 1111111 0 88 6 6 111 888 666666666 8 5 444444444444444444 3 1 8 6 6 1 7 77777 3 8 8 1 0 1 8 11 8 0 8 1 22 8 2222222 0 6 333333 1 1 8 7777 11 444 4444 88 8
lowQualScore : ......... . ...... ... .... . . .. ... .. . . .. . . ... . . . ........... ... . . . . ......... ........... . .... . . . ... . . .. ... . . . ... . .. . .. ..... . . ....... . .. . . ... ... ......... . . .................. . . . . . . . ..... . . . . . . . .. . . . . .. . ....... . . ...... . . . .... .. ... .... .. .
lowQualScore : 999999999 4 888888 888 4444 0 4 22 222 99 7 7 99 1 6 000 9 4 4 77777777777 777 1 4 6 7 666666666 22222222222 7 1111 7 0 7 666 0 7 44 000 0 1 7 000 7 99 7 22 88888 0 7 7777777 8 22 7 7 777 777 777777777 0 0 444444444444444444 8 4 0 7 7 0 5 33333 7 0 0 0 6 0 0 00 0 6 0 8 00 0 5555555 0 7 000000 4 4 0 0000 00 000 4444 22 0
consensus : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TAATCATACA-T---CG----CCC---CTTCTTATTTAAAACAAAC-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACAC-AAGCAN-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
Reference ( family-2915 ) : TTAATGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAGTAATTA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TAATCATACA-T---CG----CCC---CTTCTTATTTAAAACAAAC-TA------CAATA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTTNC-G-GCT---CAGCATCCAATCTTGATACACGGA-AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT-TCG-TAGAAAA-AAT---GCTG-A-GGGC---------AAAA-ATTCAACGAGC----TTCA----------AAGTCAANAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAAAGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGNCATTCAGCTTA-TGATCC--AC-CATCGCTGCAGTCAACAC-AAACAA-ATG-CAGAACCT-------ATTCA-ACAGATCAACATGCCAGCCA-TACCCTTTG------TCCCAGTTAATGCCGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC---ACAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|1 : CCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
gi|12 : TTATCA--AATTGATTATGGATAA-CGATGTTTA------TTTACCCGT-CATATA----G-C-TTAGTAATGT-G-GTAAATAG-AA-GA-AACATTCTTGAAAGAAATAATCACATAAT---CC----CCCT--CTTCTT-TTTAACA-AAAC-T-------CAATA-----AAT---TCC---TTCTTATAATTCGCTACC-GA-CA-TGCGATTCAT-TCACTTCCTTTTCTG-GCT---AAGCAT-CAG--TTGATACACGGA-GA---A-AA--TAATtttcgatttatgtaccactaatcaatttaatagtgtgacctctccatcaggagctcatgtatcccagaatatcaaagcaaaaatctggaataatgaatttgttcatttgaataagctatttctccaggaccactgttctgaaaatcaaactcaaattgtctttgaagggagtgaatttctgatcaatcctaagaataagaaaaaaaaaccaattttttctcaatagcttgatgcatttttttttatttatacatcaatttatctgcaaatgcacccattacaagccattcctcttgtacgatatatttctacaatcaaaagaacaatcaaacaagaggagcgctccggaatcagtgtagggtggttgacatgatgtgccaattccgattaaaaaagtcggtcgaatgcctccgctaaaactgagggtctctgtttatgatcggagcttttggttgttttatatgcagccagcaaaatatgtcaaaccaatctcagcaaagcgcgtcccctgcttaaaccagaagtgttatgactttcaaatttatgaaggcgtttgccagaaacaaattattgcgaagtatgttgcccaatgcatcaagatgtatggcacgcctacctatcaattaaactgtcatcaacttaatcgtttggtcaaggggcaagcctatgcatcagctattagatcaactc
gi|16 : atatgttttccA-----A-T---CCCCCCT-CTCAT----TGCTCCA-AAACA-TGCACGTTAA-TTATTTCCTTTGC-G-TCT---CAACATCTAATCTTGGTACACGCA-AAAAGA-AA--TTATC
gi|18 : TTAATGCCGGTTTATCA--A------TATAGATAAACCATGTT-A------TTT---TATGCACATA----GTC-TTA--AGTTA---GTAA
gi|2 : CCAACCAATACCCTTTG------TCCCAGTTAATGCGAGCGGCCGAT-TCGGAC----CGGAAA--CGAATCAGATGC---ACAACTTCCT----GAC-ATCAATCAATCAAGGTACGAGTGCTAAcaaga
gi|21 : ATAAACCATGTT-A------TTT---CATGCATATA----GTC-tttcgatttatttaccactagtccatttaatagtttgctctccattagggcatgtgtgcccaagatctcaaaaaaaaattatgtaataatgagtttttcatttgaataacttatttcttcaggaccactgtactgaaaatcaaaatcaaaattgggtctttgaaggggggtgttttttctttatcaagcctaagaaataaagaaaataagataacaaactgaatgcaattttatttatgcatccatttacctgcaaaggcacccatcaccgagccattcctcttattatacgttaatatttctacaattcaaaagatgagcgtccagaatagtgtaagggtggttggactctgatgtacaaattccaatccgattaaaaagtccgtcgatgcctccctaagctggggttctattgattcggagcttggttgttttttattgcaccagcaaacaacatctctgcaagcgagttccttctaaccagaaagtgttatgacattcaattagaagcgcgtttgccagaaacaatattcgcacgtatttgccacgcaaggcattaaattgtaatgcaacccacacatcaaaatgactctgtaaaaatctattcaatctttcttcaaggagaaatcatgcacctaaccagctataaacagctc
gi|3 : TTAATGCCGGTTTATCA--T------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TCAGTAATCA-G-GTAAA--G-AACGACAAC--TCTTAAAAG---TTATCATAAA------A----ACA---CTACATATTCAAAAAAAAC-TA------CAATA-----A-T---ACCCCCTACTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CAACTTCCTTTCT-G-CCT---CAGCATCCAATCTTGATACACGG--AA---A-AA--TTATCGGAGTGATC-AAATCTGCC--AACATCGACCT---T-GTCTCATGAAAT-AAGCTTGNNNNNNNNNNNNN-NNN-NNNNNNN-NNTAGAGCTG-T-AAGCTGTCATAGAAAAA-ATGCAGAGGGCAAAATTCAACGGACTTCAAAGTCAATAAGCCCGTAATCTACCACAGTCGGCCT-CCG-AC-GTGTGTCTT---AAAGTG-----ATTAGCTCGGGGGAGAGCTGGCC-TGATGTCGGACATGC-GGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGTCATTCAGCTTA-TGATCCCAACTTATCGCT-CAGTCAACACAAAACTC-CTGCCAGAACTTCATGCTAATTCAGAGAGATCAACATG-CAGCT----CCCTTTG------TTCCAGTTAATGCCGGC-GCCGATCTCGGACGGAACGAAAAATCAA---GAATGCCCAACAACTT-CTGACAGTCAATCAATCAATCAAGGTACGACTGCTAA
gi|4 : TATTGCCGGTTTATCA--A------TATGGATAAACCATGTT-A------TTT---CATGCATATA----GTC-TTAAAAATTA-G-GTAAC--G-AACGACAAC--TCCTAAAAG---TAATCATACA-T---CGCCACCCC---CTTCTTCTTTAAAACAAAC------------TA-----A-T---CCCCCCTTCTTAT----CGCTTCC-GAGCA-TGCGCGTCAT-CCACTTCCTTT
gi|4 : aA--TTATAGGAGTTATG-AAATCCGCA--AGCATCGACTT---C-GTCTTATAAAAT-AAGCTT-------T-AAGTT-TCG-TAGAAAATAAT---GCTG-A-GGGC---------AAAA-ACTCAACGAGC----TTCC----------AAGTCAAGAAGTCCATTTTCCA-CACAGCCGGCCTCCCG-AC-GTGTGTCATCAAAAAGTGT----GTTAGCTCGGGGGAGAGGAGGTCATGATGTCGGCCATGC-GGTCAG-GTCGGAGCAGTCTCCATTGGCTTTTAGACCTTCAGCTGT-TGATCC--AC-CATCACTGCAGTCAACCC-AACCAA-AGG-CAGAACCG-------ATCCA-ACAGATCTACAGGCCAGCCA-TACCCTTGGCCTCACTCCCAGTTAATGCCGGC-GCCGATCTAGGGC----CCGAAA--CGG---AAATGC----CAACTTCCTCTGGGGC-ATCAATCAATCAAGGTACGGATACTAAattataggagttatgaaatccgcaagcatcgacttcgtcttataaaataagctttaagtttcgtagaaaataatgctgagggcaaaaactcaacgagcttccaagtcaagaagtccattttccacacagccggcctcccgacgtgtgtcatcaaaaagtgtgttagctcgggggagaggaggtcatgatgtcggccatgcggtcaggtcggagcagtctccattggcttttagaccttcagctgttgatccaccatcactgcagtcaacccaaccaaaggcagaaccgatccaacagatctacaggccagccatacccttggcctcactcccagttaatgccggcgccgatctagggcccgaaacggaaatgccaacttcctctggggcatcaatcaatcaaggtacggatactaatta
gi|5 : atattgccggtttatcaatatggataaaccatgttatttcatgcatatagtcttaaaaattaggtaacgaacgacaactcctaaaagtaatcatacatcgccacccccttcttctttaaaacaaactaatccccccttcttatcgcttccgagcatgcgcgtcatccacttcctttT-A------TTT---CATGCATATACAAAAAC-TTAGCAATTA-G-TTAAA--G-AACGACAAC--TC-----------------ATA-T---CG----CCC---CTTCGTA--TAAAACAAAC-TA------CAANG-----A-T---tta
gi|5 : -G-GCT---CAGCATCCAATCCTGATACACGGA-AA---A-AA--TTATAGGAGTGATC-AAATTTGCC--AACATCGACTT---T-GTCTCATAAAAT-AAGCTT-------TTAAGCT--CA-TAGGAAA-AA-----ATG-A-GGGC---------AAAA-TCTCAACGAGC----ATCA----------AAATTAAGAAGCCCGTATTCTA-CATAGTCGGTCTCCCG-AC-GTGCATCTCCAAAACGTGT----ATTAGCTCGGGGGAGAGCGGGCCATGATGTCGGACATGC-TGTCAC-GTCGGGACAGTCTCCGTTGGCTGATAGGCCTTCAGCTAA-TGATCC--AC-CATCACTGCGGTAAACCC-AAGCAG-ATG-CAGAACCT-------TTTCA-ACATATCAACATGCCAGCCA-Tatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgctggctcagcatccaatcctgatacacggaaaaaattataggagtgatcaaatttgccaacatcgactttgtctcataaaataagcttttaagctcataggaaaaaatgagggcaaaatctcaacgagcatcaaaattaagaagcccgtattctacatagtcggtctcccgacgtgcatctccaaaacgtgtattagctcgggggagagcgggccatgatgtcggacatgctgtcacgtcgggacagtctccgttggctgataggccttcagctaatgatccaccatcactgcggtaaacccaagcagatgcagaaccttttcaacatatcaacatgccagccat
gi|6 : tatttcatgcatatacaaaaacttagcaattagttaaagaacgacaactcatatcgccccttcgtataaaacaaactacaangatatatttagaactaccaaatggtcaagagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgct------TATGGATAAAC-ATGTT-A------TTT---CATGCATATA----GTCTTTAGTAATCA-GCGTAAA--GAAACGACAAC--T-TTAAAAG---TTA-CACACA-----------CCC---CTTCTTATTAAAATCAAACTTA------CAATA-----A-TTCCCCCCCCTTCTTAT----CGCTTCCAGAGCATTGCGCATCAT-CAACTTCCCTTTC-GTGCTCTCCCGCATCCAATCCTGATACACGGA-AA---ACAAT-TTATCGGAGTGATCAAAATCTGCCATAACATCGACTC---T-GTCTCATGACATAAAGCTT-------TTAAGCTATCATTAGAAAA-AAT---ACTGCATGGGC---------AAAA-ATTCAA----------------------------------CCCTTAATCTA-CACAGCCGGCCTCCCGCACGGTGTGTCTTTAAAGTATATTTACATTAGCTC-GGGGAGAGCTGGCCATGATGTCGGA-ATGCAGGTCACGGTCGGGACAGTCTCCGTTGGCTAATAGTCATTCAGCTTATTGATCC--AC-TATCGCTGCAGTCAACAC-AAGCAATATG-CA
gi|7 : TAATGCCGGTTTATTA--A------TATGGATAAACCATGTT-ACATGTATTA---CATGCATATA----GGC-TTAATAATTA-G-GTAAA--G-AACGACAAC--TCTTAAACG---TAATCATACA-T---CA----CCCACCCTTCTCATTTGAAACAAAC-TA------CAATACACCCA-C---CCCCCCTT--TAT----CGCTTCT-GAGCA-TGCGTGTCAT-TCACTTCCTTTCT-G-GCT---CAGCATACAATCTTGATACAAGAA-AA---A-AAAATTATCGGAGTTATC-ACATCTGCC--AACATCGATTTAAATAGTCTCATAAAAT-AAACTT-------TTATGCT-TCA-TAGGAAA-AAT---GCAG-A-GAGC---------AAAAAATTCAACGACC----TTCA----------AAGTCAATAAGCCCGTATTCTA-CACAGTCGGCCTCCCG-AC-GTGTGTCTTCAAAA-----------CAGCTCGGGGGAGAGCGGGCCATGATG
gi|8 : taTTTATCACAA------TATGAATAAACCATGTT-G------CTT---CATGGATATG----GTC-TTAACA--TACG-GGAAA--G-AAATATAAT--TCTT--AAC---TAATTGTATA-TGTACG----CCC---TATC-CATTACAAGCGACA-TATCTTATCAATA-----A-----CCCTTCTTCATAT----TACTT-------------CGTCGTATTATTTCATTTAC-G-TTT---CAGCGTTTAACTTT--TGTACGGACCA---A-CC--TTATTGAATTG---------TG-C--GACATAAACGT---T-GTTT----AAAC-AAA-TG-------TTAAGCCGGCG-CGAAAAT-ATT---GCCG-A-TGGC---------AAAc
gi|9 : atatacatgatgggtggaacaaacactttaaacgcaatctggcatggaaccactaaagaaatgtttaaatgatttgaggctgctcactagttggtaaCCCG-AT-GTGTGTCTTCAAAAAGTGT----ATTTGCTCGGGG-AGAGCAGGCCATGATGTTGGACATGC-GATCAC-GTCGGGGCAGTCTCCGTTGGCTGATAGGCAGTAAGCTTA-TGATTC--AT-CATCGCTGCAGTCAACAC-AAACAT-ATG-CAGAACTT-------ATTCA-ACAGATCAACATACCAGCCA-TACCCTTTG------TCCCAGATAATGCTGGC-GCCGATCTCGGAC----CGGAAA--CGG---AGATGC----CAACTTCCTCGGAGGC-ATCAATCAATCAAGGTACGGGTGCTAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTATTGATTCAGAGCTTTGTTTGTTTTATACGCAGCCAGCAAATTTCAGCAAACGAGTCCTACTCACAAGAAATTGATCATAAAGTGCTATGACTTCAATTATGAAAGCGAATGCCAGAACCAATATTGAAAGTATTTGCACCAGTGCATTAAATGTAATGCACCCCACGCATTAATGAACTGTCAAAAATTTAATTAGTCTTTCAAGGGGAAACCATTCATCAACTATAGATCAGCTC
Unaligned ( gi|11 ): TTTATTCGGAGCTTTGGTTGTTTTATATGCAGCCAGCAAATTTCAACAAATCTCAGCAAACGCGTCCTGCTAACCAGAAGTGTTATGACTTCAATTATGAAGGCGTTTGCCAGAAACAATATTGCGAGTATTTGCACCAATGCATCAAATGTAATGCACCCTACCTATCAATTAACTGTCATCAACTTAATCAGTTTTTTCAAGGGGAACCTATGCATCAGCTATAGATCAAC
Unaligned ( gi|13 ): TATGTACTTCAGATTTTAATGAAGTGCGTCTTATGTGCGAATATTGCACCGTATGTGCACCAAGGCATTAATTGTAAGCACCCCGCCCATTCAATGAACTGCAAAAATCTTATCATGTCTTCGTCAAGGGGAAATCATGCACCTGACAGCTATAAAT
Unaligned ( gi|14 ): ATCAATTTACCTACAAAAGCATCCATTATAAGAAGAATCCTCTTAATAGATATCCATCTTTAATTTTTAAAAAAAAGTTCATTACGTTAGGGTGGTTAGGACTCTTAGTGCGCAATTCCGAAATGCTTCCCTTAGTTGAGAGTTCTA
Unaligned ( gi|15 ): CAGCTCTTTAGAAGCAACATAGCTGAAACATTCAAGTAAAGTTTATAAACAAATTATTCAGGTATTTATTCGATTTATTTACATTTTCTCTTGTCAGATAACTTGTGGCCACCCCCTTCCTGGTCTTAGCTTTAGACTGCCTTAA
Unaligned ( gi|17 ): ATATGCATATTGTACAGGTCGACAAATTTTGAAAATTGTACATAAAGTTGCATAATAAAAATTTAGATATTTGGATTGTACAT
Unaligned ( gi|19 ): AGCAAGCATACGGTAGCTGAACATTCAATTAAAGTTTATAATTATCCAGACA
Unaligned ( gi|20 ): TTGAAAATTGTGTGCTAATCTGCGTCATAAT