lowQualScore : 111111 111111111111 111 1111111111111111111 2222222222222222 1 11111 2222222
lowQualScore : 2 555 2 6666 2 000000 2 3 555555 2 33 2 5555 33 999999999999 4444 1 222 1 555555 7 7 8888888888888888888 1 33 1111111111111111 22 555 4 1 2 11111 777777 6 5 6666666
lowQualScore : . ... . .... . ...... . . ...... . .. . .... .. ............ .... . ... . ...... . . ................... . .. ................ .. ... . . . ..... ...... . . .......
lowQualScore : 9 888 9 1111 9 333333 7 7 333333 1 22 4 0000 55 777777777777 0000 9 555 8 222222 3 3 8888888888888888888 9 33 5555555555555555 88 555 0 8 1 11111 222222 0 8 0000000
consensus : AAACGC-A-C-AT-T----T-CTA------A-CANT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AAT-TTCG--TT-G------TTTTC-T-TCC-------------------GGA-CAC-GAAAATA-A--CGAA---G--A-TTT--AAT-C-C-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
Reference ( gi|6 ) : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AAT-TTCG--CT-G------TTTTC-T-TCC-------------------AGA-CAC-GAAAATACA--CAAA---G--A-TTT--AAT-T-C-AACAAG-AA-----ATT------AAATACGTTTACATTA---AATGAAATTAGA
gi|7 : AAATGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---TT---CGTGTTGGATTT---AAT-TTCG--CT-G------TTTTT-T-TCC-------------------AGA-CAC-GAAAATACA--AAAA---A--A-ATT--AAT-C-C-AACATG-AA-----ACT------AAATACGTCTACATTA---AATGAAA
gi|2 : cagAAACGC-A-C-AT-T----T-CTA------A-CACT---------AAA--GACTTT-CTGA----AAA-TAAA---A---TT---CGTGTTGGATTT---AAT-TTCG--CT-G------TTTTC-T-TCC-------------------AGA-CAC-GTAAATACA--CAAA---A--A-TTT--AAT-T-C-AACATG-AATTTGTATT------AAATACGTCTACATTA---A---AAATT
gi|8 : agAAACGCCA-C-AT-T----T-CTA------ATCACT---------AAA--GACTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGA-TT---AAT-TTCG--CT-G------TTTCT-T-TCC-------------------GAC-CAC-GTAAATACA--CGAA---A--ACTTT--AAT-T-C-AACATG-AATTTGTATT------AAATACGTCTACAtaattcgatttaattttttggaacatttgtatattt
gi|11 : cagAAACAC-A-G-AT-T----T-CTA------A-CATT---GA-AATAAG--GAGTTT-CTGT----AAA-TAAA---A---TGCGACGTGTTAAATTT---AAT-TTTG--TT-G------TTTTC-T-TCA-------------------AGA-CAC-GAATATA-A--TGAA------A-TTT--AAT-C-C-AACACA-AA-----ATG------AAACAC
gi|4 : agAACCAC-A-CCAT-T----T-CTACATGTAA-CACT---GA-AA-ATA--GATTTTTCTGA----AAAATAAA---A---TT---CGTGTTG-ATTT---AAC-TTCG---T-G------TTTT--T-CCC-------------------AGA-CAC-GAAAATTAA--CAAA---T--A--TT--AAT-TCC-AACACGAAA-----ATC------AAATACGTCTACAATAC--AATAAAAT
gi|12 : cgaaAGACAC-A-G-AT-T----T-TTA------A-TATT---GA-AATAAT--GATTTT-CTGA----AA--TAAA---AAATT----CATGTTGGATTT---TAT-GTCT--TT-G------TTTTC-T-CCT-------------------GGA-CAC-GAAAGTAC-----GA---A--A-TTT--AAT-C-C-AATACG-AA-----
gi|9 : cagAAACGC-G-C-AT-T----T-CTA------A-CAGT---GA-GATAAA--GATTTT-CTGG----GGA-AAAA---A---T----CCCGTTGGGTTA---AAT-TTCG--TT-G------TCTTT-T-TTTTTTTTTTTTTTTTTTTGGGGGA-CAC-GAAAATAAA--GAAA---G-----TT--AAT-C-C-AACACG-AA-----A
gi|16 : cagAGACAC-A-G-AT-T----TTCTA------A-AAAT---AA-AATAGA--GATTTT--TGA----AAT-TAAA---AAT-T----CAAGTAGGATTT---AAT-TT-G-----G------TTTTC-T-
gi|1 : gAACAC-A-C-ATAT----T-CTA------A-CAAT---GA-AATAGATAGATTTT-CTGA----AA--TACA---A---TT---CGTGTTGGACATGGAAAT-TTTG--TT-G------TTTTC-T-TCC-------------------AGA-CTCAGAAAATAGA--CAAA---A--A-TTT--AAT-T-CAAATACG-AG-----ATTTTTCTAAAATACATCTACAGTATCTAAT--AATTAacaa
gi|13 : cagagAACAT-A-C-AT-T----T-GTAG-----A-TACTTCTGACAGTAAA--AATTC-----A----AAA-T----------T----TGTGTTGGATTT---AAT-TTCA--GT-G------TTTTC-T-CCT-------------------TGA-CAT-GAAAA-A-----AAA---A--A-TAT--AAT-C-G-AGCACA-AA-----ATT------AAATattttaaccaaatttatctgcagaatgataaaatccacgggtgaca
gi|20 : gtACGC-AGT-AT-T----T-CTA------A-AATT---GA-AACAAA--GAGTGT-CTGT----AAA-TA
gi|17 : acagggCAC-A-G-AT-T----T-CTA------A---------------AA--GATTTT-CTGACATAAAA-AAAA---A---T----CGTGTTGGA---------------------------TTTC-T-CCC-------------------CGA-CAC-GGAAATA
gi|10 : agcagtC-A-G-AT-T----T-CCA------A-CATT---GT-AGTAGA--GA---------------A-T----------T----C----TGGATTT---AAT-TTTTT-CC-G------TTTTC-T-CCC-------------------AGA-CAT-GAAAATA-A--T-GA---T--A-TTT--AAT-C-C-AACATG-AA-----ATT------AAATacg
gi|19 : aC-A-C-AT-TATTAT-CTA------A-T-TT---GA-A-TACA--GATT---CTGA----AAA-TAAA---AT--T----CGTGTTGGAgtctgaaacttttgaaaactaattctttctaattt
gi|14 : cagagaA------A-CAGC---AA-ATTAAA--GATTTT-G-GA----AAT-TAAACAAA---T----CTTATTAGATTT---AAT-TTCT--TT-GGTTTTATTTTC-T-T---------------------AAT-CAC-GAAAATA-A--TGAA------A-TTT--AAT-C-C-AACACG-AT-----ATT------TAGTA
gi|3 : gACAAA--GATTTT-CT------ATA-TAAA---AAATT----TGTGTTGGATTT---AAG-TTTA--TT-G------TTTTT-T-CCC-------------------AGG-AAC-GAAAATTGA--TAAATTTT--T-TTT--AATCC-C-AACAAG-AA-----ATT------AAATACGTCTACAGTA---t
gi|15 : TAAA--GATTTC-CTGA----AAT-GAAA---AGTTT----CTTGTTGGATTT---AA----------------------C-T-TCT-------------------AGA-CAC-GAAAATA-A--CGA----G--A-TTT--AAT-C-C-AACACG-AC-----ATT------AAATAtctttgattaagtgaagcatgaaaatgagaaatgcagggtgata
gi|15 : -TAAT---G---T----CGTGTTGGATTA---AAT-CTCG--TT-A------TTTTCGTGTCT-------------------AG-------------------AA---G----TTA--AAT-C-C-AACAAG-AA-----ACT------
gi|14 : taaagatttcctgaaatgaaa-TAAAT--A---T----CGTGTTGGATTA---AAT-TTCA--TT-A------TTTTC-G-T----------------------GATTAA-GAAAATAAAACCAAA---GAAA-TTA--AAT-C-T-AATAAG-Aaata
gi|11 : gaacagcaaattaaagattttggaaattaaacaaa---T----TGTGTTGGATTA---AAT-TTCA--TT-A------TATTCGTGTCT-------------------TGA--A--GAAAACA-A--CAAA------A-TTA--AAT-T-T-AACAgtat
gi|4 : agaaacacagatttctaacattgaaataaggagtttctgtaaataaaatgcgacg---T----CGTGTTGGAATT---AATATTTG--TTAA------TTTTCGTGTCT-------------------GG------GAAAA-ACA--CGAA---G-----TT--AAA-T-C-AACACG-AA-----TTT------aatgaaacac
gi|12 : cgaaaaccacaccatttctacatgtaacactgaaaatagatttttctgaaaaata---T----CGTATTGGATTA---AAT-TTCG---T-A------CTTTCGTGTCC-------------------AGG--A--GAAA----A--CAAA---G--A-CATAAAAT-C-C-AACATG-AA-----TTT------aaatcaaatacgtctacaatacaataaaat
gi|5 : cagagacacagatttttaatattgaaataatgattttctgaaataaaTGGATT----AAT-TTTTTTCC-G------TTTTC-T-TCCTCCC---------------AGA-CAT-GAAAATATA--TGAT---A--A-TTT--AAT-C-CAAACATG-AA-----ATT------AAATa
gi|18 : cacagatttccaacattgtagttagaagaattcG--TT-G------GTTTC-T-CCC-------------------AGA-CAT-TACACTA-A--CGAA------A-TTT--AAT-C-C-AACACG-AG-----ATT------AAAAACGTCTACAgtcttgaaaacttgaaaacctaattctttctaactttgatattt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): AAAATTTACTTCGATTTAATTTTGGAACCATGTTTG
Alignments
lowQualScore : 22222222 22222222222222222222 1 1 11111 111
lowQualScore : 2 444 2 5555 2 999999 2 1 444 2 1 33 2 4444 33 444 55555555 444 777777 33 88888888888888888888 2 2 2 4 0 2 5 88888 2 5 22222 2 888888 1 888 0 8
lowQualScore : . ... . .... . ...... . . ... . . .. . .... .. ... ........ ... ...... .. .................... . . . . . . . ..... . . ..... . ...... . ... . .
lowQualScore : 7 777 7 7777 7 777777 5 9 444 5 4 11 2 7777 00 111 77777777 111 888888 11 00000000000000000000 4 4 4 1 6 5 8 88888 5 0 55555 7 222222 0 333 8 2
consensus : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--GTTT--TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACGAA-----A-TT------AAATACGTCTACANTA---AATGAAATTA
Reference ( family-2854 ) : AAACGC-A-C-AT-T----T-CTA------A-CANT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--GTTT--TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AGA-----TTTAAT-CC-AACACGAA-----A-TT------AAATACGTCTACANTA---AATGAAATTA
gi|1 : AACAC-A-C-ATAT----T-CTA------A-CAAT---GA-AATAGATAGATTTT-CTGA----AA--TACA---A---TT---CGTGTTGGACATGGAAATTTTGTT--GTTT--TCTTCC-------------------AGA-CTCAGAAAAT-AGACAA-AAA-----TTTAAT-TCAAATACGAG-----A-TTTTTCTAAAATACATCTACAGTATCTAAT--AATTA
gi|10 : cagagC-A-G-AT-T----T-CCA------A-CATT---GT-AGTAGA--GA---------------A-T----------T----C----TGGATTT---AATTTTTTCC-GTTT--TCTCCC-------------------AGA-CAT-GAAAAT-A-ATG--ATA-----TTTAAT-CC-AACATGAA-----A-TT------AAAT--GTCTattttaaccaaatttatctgcagaatgataaaatccacgggtgaca
gi|11 : aAAACAC-A-G-AT-T----T-CTA------A-CATT---GA-AATAAG--GAGTTT-CTGT----AAA-TAAA---A---TGCGACGTGTTAAATTT---AATTTTGTT--GTTT--TCTTCA-------------------AGA-CAC-GAATAT-A-ATGA-A-A-----TTTAAT-CC-AACACAAA-----A-TG------AAACACgaaacttttgaaaactaattctttctaattt
gi|12 : agAGACAC-A-G-AT-T----T-TTA------A-TATT---GA-AATAAT--GATTTT-CTGA----AA--TAAA---AAATT----CATGTTGGATTT---TATGTCTTT--GTTT--TCTCCT-------------------GGA-CAC-GAAAGT---ACGA-A-A-----TTTAAT-CC-AATACGAA-----
gi|13 : cagAACAT-A-C-AT-T----T-GTAG-----A-TACTTCTGACAGTAAA--AATTC-----A----AAA-T----------T----TGTGTTGGATTT---AATTTCAGT--GTTT--TCTCCT-------------------TGA-CAT-GAAAA--A-A--A-AAA-----TATAAT-CG-AGCACAAA-----A-TT------AAAT
gi|14 : gtA------A-CAGC---AA-ATTAAA--GATTTT-G-GA----AAT-TAAACAAA---T----CTTATTAGATTT---AATTTCTTTG-GTTTTATTTTCT-------------------TAATCAC-GAAAAT-A-ATGA-A-A-----TTTAAT-CC-AACACGAT-----A-TT------TAGTA
gi|15 : gTAAA--GATTTC-CTGA----AAT-GAAA---AGTTT----CTTGTTGGATTT---AA----------------CTTCT-------------------AGA-CAC-GAAAAT-A-ACGA--GA-----TTTAAT-CC-AACACGAC-----A-TT------AAATAt
gi|16 : AGACAC-A-G-AT-T----TTCTA------A-AAAT---AA-AATAGA--GATTTT--TGA----AAT-TAAA---AAT-T----CAAGTAGGATTT---AATTT-G----GTTT--TCT
gi|17 : gCAC-A-G-AT-T----T-CTA------A---------------AA--GATTTT-CTGACATAAAA-AAAA---A---T----CGTGTTGGA-------------------TT--TCTCCC-------------------CGA-CAC-GGAAAT-A-ACGacaa
gi|18 : agcagtGTT--GGTT--TCTCCC-------------------AGA-CAT-TACACT-A-ACGA-A-A-----TTTAAT-CC-AACACGAG-----A-TT------AAAAACGTCTACA
gi|19 : tcagtgatC-A-C-AT-TATTAT-CTA------A-T-TT---GA-A-TACA--GATT---CTGA----AAA-TAAA---AT--T----CGTGTTGGAg
gi|2 : cagagaAAACGC-A-C-AT-T----T-CTA------A-CACT---------AAA--GACTTT-CTGA----AAA-TAAA---A---TT---CGTGTTGGATTT---AATTTCGCT--GTTT--TCTTCC-------------------AGA-CAC-GTAAAT-ACACAA-AAA-----TTTAAT-TC-AACATGAATTTGTA-TT------AAATACGTCTACATTA---A---AAATT
gi|20 : agACGC-AGT-AT-T----T-CTA------A-AATT---GA-AACAAA--GAGTGT-CTGT----AAA-TAtaattcgatttaattttttggaacatttgtatattt
gi|3 : acagggACAAA--GATTTT-CT------ATA-TAAA---AAATT----TGTGTTGGATTT---AAGTTTATT--GTTT--TTTCCC-------------------AGG-AAC-GAAAAT----TGATAAATTTTTTTTAATCCC-AACAAGAA-----A-TT------AAATACGTCTACAGTA---
gi|4 : AACCAC-A-CCAT-T----T-CTACATGTAA-CACT---GA-AA-ATA--GATTTTTCTGA----AAAATAAA---A---TT---CGTGTTG-ATTT---AACTTCGT---GTTT--T-TCCC-------------------AGA-CAC-GAAAATTA-ACAA-ATA-----TTAATT-CC-AACACGAA-----AATC------AAATACGTCTACAATAC--AATAAAATtctttgattaagtgaagcatgaaaatgagaaatgcagggtgata
gi|5 : cgaaTGGATT----AATTTTTTTCCGTTT--TCTTCCTCCC---------------AGA-CAT-GAAAAT-ATATGA-TAA-----TTTAAT-CCAAACATGAA-----A-TT------AAAT--GTCT
gi|6 : cacagatttccaacattgtagttagaagaattcAAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGCT--GTTT--TCTTCC-------------------AGA-CAC-GAAAAT-ACACAA-AGA-----TTTAAT-TC-AACAAGAA-----A-TT------AAATACGTTTACATTA---AATGAAATTAtgaaaacttgaaaacctaattctttctaactttgatattt
gi|7 : AAATGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGATTT---AATTTCGCT--GTTT--TTTTCC-------------------AGA-CAC-GAAAAT-ACAAAA-AAA-----ATTAAT-CC-AACATGAA-----A-CT------AAATACGTCTACATTA---AATGAAAga
gi|8 : cagAAACGCCA-C-AT-T----T-CTA------ATCACT---------AAA--GACTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGA-TT---AATTTCGCT--GTTT--CTTTCC-------------------GAC-CAC-GTAAAT-ACACGA-AAAC----TTTAAT-TC-AACATGAATTTGTA-TT------AAATACGTCTACA
gi|9 : cagAAACGC-G-C-AT-T----T-CTA------A-CAGT---GA-GATAAA--GATTTT-CTGG----GGA-AAAA---A---T----CCCGTTGGGTTA---AATTTCGTT--GTCT--TTTTTTTTTTTTTTTTTTTTTTGGGGGA-CAC-GAAAAT-A-AAGA-A-A-----GTTAAT-CC-AACACGAA-----A-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAAATTTACTTCGATTTAATTTTGGAACCATGTTTG
Alignments
lowQualScore : 22222222 22222222222222222222 1 11111 111
lowQualScore : 2 444 2 5555 2 999999 2 2 444 2 1 33 2 4444 33 444 55555555 444 555555 33 2 88888888888888888888 2 2 2 4 0 22 999999 2 5 2 22222 888888 1 888 0 8
lowQualScore : . ... . .... . ...... . . ... . . .. . .... .. ... ........ ... ...... .. . .................... . . . . . .. ...... . . . ..... ...... . ... . .
lowQualScore : 7 777 7 7777 7 777777 5 8 444 5 4 11 2 7777 00 111 77777777 111 666666 11 2 00000000000000000000 4 4 4 1 6 77 999999 5 0 5 55555 222222 0 333 8 2
consensus : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
Reference ( family-2854 ) : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
gi|1 : AACAC-A-C-ATAT----T-CTA------A-CAAT---GA-AATAGATAGATTTT-CTGA----AA--TACA---A---TT---CGTGTTGGACATGGAAATTTTGTT--G--TTT-TCTTCC-------------------AGA-CTCAGAAAAT-AGACAA-AAA-----TTTAAT-TCAAATACG-AG-----ATTTTTCTAAAATACATCTACAGTATCTAAT--AATTA
gi|10 : cagagC-A-G-AT-T----T-CCA------A-CATT---GT-AGTAGA--GA---------------A-T----------T----C----TGGATTT---AATTTTTTCC-G--TTT-TCTCCC-------------------AGA-CAT-GAAAAT-A-ATG--ATA-----TTTAAT-CC-AACATG-AA-----ATT------AAAT--GTCTattttaaccaaatttatctgcagaatgataaaatccacgggtgaca
gi|11 : aAAACAC-A-G-AT-T----T-CTA------A-CATT---GA-AATAAG--GAGTTT-CTGT----AAA-TAAA---A---TGCGACGTGTTAAATTT---AATTTTGTT--G--TTT-TCTTCA-------------------AGA-CAC-GAATAT-A-ATG--AAA-----TTTAAT-CC-AACACA-AA-----ATG------AAACACgaaacttttgaaaactaattctttctaattt
gi|12 : agAGACAC-A-G-AT-T----T-TTA------A-TATT---GA-AATAAT--GATTTT-CTGA----AA--TAAA---AAATT----CATGTTGGATTT---TATGTCTTT--G--TTT-TCTCCT-------------------GGA-CAC-GAAAGT---ACG--AAA-----TTTAAT-CC-AATACG-AA-----
gi|13 : cagAACAT-A-C-AT-T----T-GTAG-----A-TACTTCTGACAGTAAA--AATTC-----A----AAA-T----------T----TGTGTTGGATTT---AATTTCAGT--G--TTT-TCTCCT-------------------TGA-CAT-GAAAA--A-A--A-AAA-----TATAAT-CG-AGCACA-AA-----ATT------AAAT
gi|14 : gtA------A-CAGC---AA-ATTAAA--GATTTT-G-GA----AAT-TAAACAAA---T----CTTATTAGATTT---AATTTCTTT--GGTTTTATTTTCT-------------------TAATCAC-GAAAAT-A-ATGA-AA------TTTAAT-CC-AACACG-AT-----ATT------TAGTA
gi|15 : gTAAA--GATTTC-CTGA----AAT-GAAA---AGTTT----CTTGTTGGATTT---AA-----------------CTTCT-------------------AGA-CAC-GAAAAT-A-ACGA-GA------TTTAAT-CC-AACACG-AC-----ATT------AAATAt
gi|16 : AGACAC-A-G-AT-T----TTCTA------A-AAAT---AA-AATAGA--GATTTT--TGA----AAT-TAAA---AAT-T----CAAGTAGGATTT---AATTT-G----G--TTT-TCT
gi|17 : gCAC-A-G-AT-T----T-CTA------A---------------AA--GATTTT-CTGACATAAAA-AAAA---A---T----CGTGTTGGA---------------------TT-TCTCCC-------------------CGA-CAC-GGAAAT-A-ACGacaa
gi|18 : agcagtGTT--G--GTT-TCTCCC-------------------AGA-CAT-TACACT-A-ACGA-AA------TTTAAT-CC-AACACG-AG-----ATT------AAAAACGTCTACA
gi|19 : tcagtgatC-A-C-AT-TATTAT-CTA------A-T-TT---GA-A-TACA--GATT---CTGA----AAA-TAAA---AT--T----CGTGTTGGAg
gi|2 : cagagaAAACGC-A-C-AT-T----T-CTA------A-CACT---------AAA--GACTTT-CTGA----AAA-TAAA---A---TT---CGTGTTGGATTT---AATTTCGCT--G--TTT-TCTTCC-------------------AGA-CAC-GTAAAT-ACACAA-AAA-----TTTAAT-TC-AACATG-AATTTGTATT------AAATACGTCTACATTA---A---AAATT
gi|20 : agACGC-AGT-AT-T----T-CTA------A-AATT---GA-AACAAA--GAGTGT-CTGT----AAA-TAtaattcgatttaattttttggaacatttgtatattt
gi|3 : acagggACAAA--GATTTT-CT------ATA-TAAA---AAATT----TGTGTTGGATTT---AAGTTTATT--G--TTT-TTTCCC-------------------AGG-AAC-GAAAAT----TGATAAATTTTTTTTAATCCC-AACAAG-AA-----ATT------AAATACGTCTACAGTA---
gi|4 : AACCAC-A-CCAT-T----T-CTACATGTAA-CACT---GA-AA-ATA--GATTTTTCTGA----AAAATAAA---A---TT---CGTGTTG-ATTT---AACTTCGT---G--TTT-T-TCCC-------------------AGA-CAC-GAAAATTA-ACAA-ATA-----TTAATT-CC-AACACGAAA-----ATC------AAATACGTCTACAATAC--AATAAAATtctttgattaagtgaagcatgaaaatgagaaatgcagggtgata
gi|5 : cgaaTGGATT----AATTTTTTTCCG--TTT-TCTTCCTCCC---------------AGA-CAT-GAAAAT-ATATGA-TAA-----TTTAAT-CCAAACATG-AA-----ATT------AAAT--GTCT
gi|6 : cacagatttccaacattgtagttagaagaattcAAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGCT--G--TTT-TCTTCC-------------------AGA-CAC-GAAAAT-ACACAA-AGA-----TTTAAT-TC-AACAAG-AA-----ATT------AAATACGTTTACATTA---AATGAAATTAtgaaaacttgaaaacctaattctttctaactttgatattt
gi|7 : AAATGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGATTT---AATTTCGCT--G--TTT-TTTTCC-------------------AGA-CAC-GAAAAT-ACAAAA-AAA-----ATTAAT-CC-AACATG-AA-----ACT------AAATACGTCTACATTA---AATGAAAga
gi|8 : cagAAACGCCA-C-AT-T----T-CTA------ATCACT---------AAA--GACTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGA-TT---AATTTCGCT--G--TTT-CTTTCC-------------------GAC-CAC-GTAAAT-ACACGA-AAAC----TTTAAT-TC-AACATG-AATTTGTATT------AAATACGTCTACA
gi|9 : cagAAACGC-G-C-AT-T----T-CTA------A-CAGT---GA-GATAAA--GATTTT-CTGG----GGA-AAAA---A---T----CCCGTTGGGTTA---AATTTCGTT--G--TCT-TTTTTTTTTTTTTTTTTTTTTTGGGGGA-CAC-GAAAAT-A-AAGA-AAG------TTAAT-CC-AACACG-AA-----A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAAATTTACTTCGATTTAATTTTGGAACCATGTTTG
Alignments
lowQualScore : 22222222 22222222222222222222 1 11111 111
lowQualScore : 2 444 2 5555 2 999999 2 2 444 2 1 33 2 4444 33 444 55555555 444 555555 33 2 88888888888888888888 2 2 2 4 0 22 999999 2 5 2 22222 888888 1 888 0 8
lowQualScore : . ... . .... . ...... . . ... . . .. . .... .. ... ........ ... ...... .. . .................... . . . . . .. ...... . . . ..... ...... . ... . .
lowQualScore : 7 777 7 7777 7 777777 5 8 444 5 4 11 2 7777 00 111 77777777 111 666666 11 2 00000000000000000000 4 4 4 1 6 77 999999 5 0 5 55555 222222 0 333 8 2
consensus : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
Reference ( family-2854 ) : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
gi|1 : AACAC-A-C-ATAT----T-CTA------A-CAAT---GA-AATAGATAGATTTT-CTGA----AA--TACA---A---TT---CGTGTTGGACATGGAAATTTTGTT--G--TTT-TCTTCC-------------------AGA-CTCAGAAAAT-AGACAA-AAA-----TTTAAT-TCAAATACG-AG-----ATTTTTCTAAAATACATCTACAGTATCTAAT--AATTA
gi|10 : cagagC-A-G-AT-T----T-CCA------A-CATT---GT-AGTAGA--GA---------------A-T----------T----C----TGGATTT---AATTTTTTCC-G--TTT-TCTCCC-------------------AGA-CAT-GAAAAT-A-ATG--ATA-----TTTAAT-CC-AACATG-AA-----ATT------AAAT--GTCTattttaaccaaatttatctgcagaatgataaaatccacgggtgaca
gi|11 : aAAACAC-A-G-AT-T----T-CTA------A-CATT---GA-AATAAG--GAGTTT-CTGT----AAA-TAAA---A---TGCGACGTGTTAAATTT---AATTTTGTT--G--TTT-TCTTCA-------------------AGA-CAC-GAATAT-A-ATG--AAA-----TTTAAT-CC-AACACA-AA-----ATG------AAACACgaaacttttgaaaactaattctttctaattt
gi|12 : agAGACAC-A-G-AT-T----T-TTA------A-TATT---GA-AATAAT--GATTTT-CTGA----AA--TAAA---AAATT----CATGTTGGATTT---TATGTCTTT--G--TTT-TCTCCT-------------------GGA-CAC-GAAAGT---ACG--AAA-----TTTAAT-CC-AATACG-AA-----
gi|13 : cagAACAT-A-C-AT-T----T-GTAG-----A-TACTTCTGACAGTAAA--AATTC-----A----AAA-T----------T----TGTGTTGGATTT---AATTTCAGT--G--TTT-TCTCCT-------------------TGA-CAT-GAAAA--A-A--A-AAA-----TATAAT-CG-AGCACA-AA-----ATT------AAAT
gi|14 : gtA------A-CAGC---AA-ATTAAA--GATTTT-G-GA----AAT-TAAACAAA---T----CTTATTAGATTT---AATTTCTTT--GGTTTTATTTTCT-------------------TAATCAC-GAAAAT-A-ATGA-AA------TTTAAT-CC-AACACG-AT-----ATT------TAGTA
gi|15 : gTAAA--GATTTC-CTGA----AAT-GAAA---AGTTT----CTTGTTGGATTT---AA-----------------CTTCT-------------------AGA-CAC-GAAAAT-A-ACGA-GA------TTTAAT-CC-AACACG-AC-----ATT------AAATAt
gi|16 : AGACAC-A-G-AT-T----TTCTA------A-AAAT---AA-AATAGA--GATTTT--TGA----AAT-TAAA---AAT-T----CAAGTAGGATTT---AATTT-G----G--TTT-TCT
gi|17 : gCAC-A-G-AT-T----T-CTA------A---------------AA--GATTTT-CTGACATAAAA-AAAA---A---T----CGTGTTGGA---------------------TT-TCTCCC-------------------CGA-CAC-GGAAAT-A-ACGacaa
gi|18 : agcagtGTT--G--GTT-TCTCCC-------------------AGA-CAT-TACACT-A-ACGA-AA------TTTAAT-CC-AACACG-AG-----ATT------AAAAACGTCTACA
gi|19 : tcagtgatC-A-C-AT-TATTAT-CTA------A-T-TT---GA-A-TACA--GATT---CTGA----AAA-TAAA---AT--T----CGTGTTGGAg
gi|2 : cagagaAAACGC-A-C-AT-T----T-CTA------A-CACT---------AAA--GACTTT-CTGA----AAA-TAAA---A---TT---CGTGTTGGATTT---AATTTCGCT--G--TTT-TCTTCC-------------------AGA-CAC-GTAAAT-ACACAA-AAA-----TTTAAT-TC-AACATG-AATTTGTATT------AAATACGTCTACATTA---A---AAATT
gi|20 : agACGC-AGT-AT-T----T-CTA------A-AATT---GA-AACAAA--GAGTGT-CTGT----AAA-TAtaattcgatttaattttttggaacatttgtatattt
gi|3 : acagggACAAA--GATTTT-CT------ATA-TAAA---AAATT----TGTGTTGGATTT---AAGTTTATT--G--TTT-TTTCCC-------------------AGG-AAC-GAAAAT----TGATAAATTTTTTTTAATCCC-AACAAG-AA-----ATT------AAATACGTCTACAGTA---
gi|4 : AACCAC-A-CCAT-T----T-CTACATGTAA-CACT---GA-AA-ATA--GATTTTTCTGA----AAAATAAA---A---TT---CGTGTTG-ATTT---AACTTCGT---G--TTT-T-TCCC-------------------AGA-CAC-GAAAATTA-ACAA-ATA-----TTAATT-CC-AACACGAAA-----ATC------AAATACGTCTACAATAC--AATAAAATtctttgattaagtgaagcatgaaaatgagaaatgcagggtgata
gi|5 : cgaaTGGATT----AATTTTTTTCCG--TTT-TCTTCCTCCC---------------AGA-CAT-GAAAAT-ATATGA-TAA-----TTTAAT-CCAAACATG-AA-----ATT------AAAT--GTCT
gi|6 : cacagatttccaacattgtagttagaagaattcAAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGCT--G--TTT-TCTTCC-------------------AGA-CAC-GAAAAT-ACACAA-AGA-----TTTAAT-TC-AACAAG-AA-----ATT------AAATACGTTTACATTA---AATGAAATTAtgaaaacttgaaaacctaattctttctaactttgatattt
gi|7 : AAATGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGATTT---AATTTCGCT--G--TTT-TTTTCC-------------------AGA-CAC-GAAAAT-ACAAAA-AAA-----ATTAAT-CC-AACATG-AA-----ACT------AAATACGTCTACATTA---AATGAAAga
gi|8 : cagAAACGCCA-C-AT-T----T-CTA------ATCACT---------AAA--GACTTT-CTGA----AAA-TAAA---AT--T----CGTGTTGGA-TT---AATTTCGCT--G--TTT-CTTTCC-------------------GAC-CAC-GTAAAT-ACACGA-AAAC----TTTAAT-TC-AACATG-AATTTGTATT------AAATACGTCTACA
gi|9 : cagAAACGC-G-C-AT-T----T-CTA------A-CAGT---GA-GATAAA--GATTTT-CTGG----GGA-AAAA---A---T----CCCGTTGGGTTA---AATTTCGTT--G--TCT-TTTTTTTTTTTTTTTTTTTTTTGGGGGA-CAC-GAAAAT-A-AAGA-AAG------TTAAT-CC-AACACG-AA-----A
blockSeqs : C GT . ATTA T CATGTA T T TCT C G . T CATA AA CAA TGCGA . TTTTCC GT A TTTTTTTTTTTTTTTTGGGG T . T C AT ATTTTT C A A TTTGT . T C A
blockSeqs : . CC . . . G . T . . A . . . A . AATT . TTTCC . . TCCCA . . . T A AC . . . TTTGT . G . G
blockSeqs : . G . . . . . T . . A . . . A . GTTT . TGTT . . A . . . C A A . . . . . A . G
blockSeqs : . G . . . . . C . . G . . . A . AATT . CTTT . . A . . . C A A . . . . . T . .
blockSeqs : . G . . . . . G . . T . . . T . ATT . CAGT . . G . . . C A A . . . . . T .
blockSeqs : . C . . . . . A . . A . . . T . TT . CTTT . . T . . . . A A . . . . .
blockSeqs : . G . . . . . T . . A . . . T . TT . CGCT . . T . . . . A A . . . . .
blockSeqs : . G . . . . . C . . A . . . A . TT . TATT . . A . . . . A A . . . . .
blockSeqs : . C . . . . . T . . A . . . A . TT . CGCT . . C . . . . A A . . . . .
blockSeqs : . C . . . . . C . . A . . . A . TT . CGCT . . A . . . . A A . . . . .
blockSeqs : . C . . . . . C . . A . . . A . T . CGCT . . A . . . . A A . . . . .
blockSeqs : . C . . . . . C . . A . . . A . T . CGTT . . A . . . . A G . . . . .
blockSeqs : . C . . . . . C . . . . . . A . T . CGT . . A . . . . . . . . . . .
blockSeqs : . C . . . . . G . . . . . . A . T . G . . A . . . . . . . . . .
blockSeqs : . . . . . . . . . A . T . . . . A . . . . . . . . . .
blockSeqs : . . . . A . T . . . . G . . . .
blockSeqs : . . . . . .
blockSeqCons : ** A* TT****** *** ****** ***
originalCons : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---A---T----CGTGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
finalCons : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GATTTT-CTGA----AAA-TAAA---ATT------CGTGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAAT-A-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAAATTTACTTCGATTTAATTTTGGAACCATGTTTG
Alignments
lowQualScore : 22222222222222222222 1 11111 111
lowQualScore : 2 444 2 5555 2 999999 2 2 444 2 1 33 2 55555 222 55 333 6666 444 555555 33 2 88888888888888888888 2 2 2 4 0 22 999999 2 5 2 22222 888888 1 888 0 8
lowQualScore : . ... . .... . ...... . . ... . . .. . ..... ... .. ... .... ... ...... .. . .................... . . . . . .. ...... . . . ..... ...... . ... . .
lowQualScore : 7 777 7 7777 7 777777 5 8 444 5 4 11 2 88888 333 33 999 8888 111 666666 11 2 00000000000000000000 4 4 4 1 6 77 999999 5 0 5 55555 222222 0 333 8 2
consensus : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GA-TTTTCTG-A---AA-ATAAAA--T---TCG---TGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAA-TA-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
Reference ( family-2854 ) : AAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GA-TTTTCTG-A---AA-ATAAAA--T---TCG---TGTTGGATTT---AATTTCGTT--G--TTT-TCTTCC-------------------GGA-CAC-GAAAA-TA-ACGA-AAA-----TTTAAT-CC-AACACG-AA-----ATT------AAATACGTCTACANTA---AATGAAATTA
gi|1 : AACAC-A-C-ATAT----T-CTA------A-CAAT---GA-AATAGATAGA-TTTTCTG-A---AA--TACAA--T---TCG---TGTTGGACATGGAAATTTTGTT--G--TTT-TCTTCC-------------------AGA-CTCAGAAAA-TAGACAA-AAA-----TTTAAT-TCAAATACG-AG-----ATTTTTCTAAAATACATCTACAGTATCTAAT--AATTA
gi|10 : cagagC-A-G-AT-T----T-CCA------A-CATT---GT-AGTAGA--GA---------------------A--T---TC-------TGGATTT---AATTTTTTCC-G--TTT-TCTCCC-------------------AGA-CAT-GAAAA-TA-ATG--ATA-----TTTAAT-CC-AACATG-AA-----ATT------AAAT--GTCTattttaaccaaatttatctgcagaatgataaaatccacgggtgaca
gi|11 : aAAACAC-A-G-AT-T----T-CTA------A-CATT---GA-AATAAG--GA-GTTTCTG-T---AA-ATAAAA--T---GCGACGTGTTAAATTT---AATTTTGTT--G--TTT-TCTTCA-------------------AGA-CAC-GAATA-TA-ATG--AAA-----TTTAAT-CC-AACACA-AA-----ATG------AAACACgaaacttttgaaaactaattctttctaattt
gi|12 : agAGACAC-A-G-AT-T----T-TTA------A-TATT---GA-AATAAT--GA-TTTTCTG-A---AATAAAAAA--T---TCA---TGTTGGATTT---TATGTCTTT--G--TTT-TCTCCT-------------------GGA-CAC-GAAAG-T--ACG--AAA-----TTTAAT-CC-AATACG-AA-----
gi|13 : cagAACAT-A-C-AT-T----T-GTAG-----A-TACTTCTGACAGTAAA--AA-TTC--------------AAAA--T---TTG---TGTTGGATTT---AATTTCAGT--G--TTT-TCTCCT-------------------TGA-CAT-GAAAA--A-A--A-AAA-----TATAAT-CG-AGCACA-AA-----ATT------AAAT
gi|14 : gtA------A-CAGC---AA-ATTAAA--GA-TTTT--G-G---AA-ATTAAA--CAAATCT---TATTAGATTT---AATTTCTTT--GGTTTTATTTTCT-------------------TAATCAC-GAAAA-TA-ATGA-AA------TTTAAT-CC-AACACG-AT-----ATT------TAGTA
gi|15 : gTAAA--GA-TTTCCTG-A---AA-TGAAAAGTT---TCT---TGTTGGATTT---AA-----------------CTTCT-------------------AGA-CAC-GAAAA-TA-ACGA-GA------TTTAAT-CC-AACACG-AC-----ATT------AAATAt
gi|16 : AGACAC-A-G-AT-T----TTCTA------A-AAAT---AA-AATAGA--GA-TTTT-TG-A---AA-TTAAAAA-T---TCA---AGTAGGATTT---AATTT-G----G--TTT-TCT
gi|17 : gCAC-A-G-AT-T----T-CTA------A---------------AA--GA-TTTTCTG-ACATAA-AAAAAA--A---TCG---TGTTGGA---------------------TT-TCTCCC-------------------CGA-CAC-GGAAA-TA-ACGacaa
gi|18 : agcagtGTT--G--GTT-TCTCCC-------------------AGA-CAT-TACAC-TA-ACGA-AA------TTTAAT-CC-AACACG-AG-----ATT------AAAAACGTCTACA
gi|19 : tcagtgatC-A-C-AT-TATTAT-CTA------A-T-TT---GA-A-TACA--GA-TT--CTG-A---AA-ATAAAA--T---TCG---TGTTGGAg
gi|2 : cagagaAAACGC-A-C-AT-T----T-CTA------A-CACT---------AAA--GA-CTTTCTG-A---AA-ATAAAA--T---TCG---TGTTGGATTT---AATTTCGCT--G--TTT-TCTTCC-------------------AGA-CAC-GTAAA-TACACAA-AAA-----TTTAAT-TC-AACATG-AATTTGTATT------AAATACGTCTACATTA---A---AAATT
gi|20 : agACGC-AGT-AT-T----T-CTA------A-AATT---GA-AACAAA--GA-GTGTCTG-T---AA-ATAtaattcgatttaattttttggaacatttgtatattt
gi|3 : acagggACAAA--GA-TTTTCTA-T---AT-AAAAAA--T---TTG---TGTTGGATTT---AAGTTTATT--G--TTT-TTTCCC-------------------AGG-AAC-GAAAA-T---TGATAAATTTTTTTTAATCCC-AACAAG-AA-----ATT------AAATACGTCTACAGTA---
gi|4 : AACCAC-A-CCAT-T----T-CTACATGTAA-CACT---GA-AA-ATA--GATTTTTCTGAA---AA-ATAAAA--T---TCG---TGTT-GATTT---AACTTCG-T--G--TTT-T-TCCC-------------------AGA-CAC-GAAAATTA-ACAA-ATA-----TTAATT-CC-AACACGAAA-----ATC------AAATACGTCTACAATAC--AATAAAATtctttgattaagtgaagcatgaaaatgagaaatgcagggtgata
gi|5 : cgaaAGAA--T---TC-------TGGATT----AATTTTTTTCCG--TTT-TCTTCCTCCC---------------AGA-CAT-GAAAA-TATATGA-TAA-----TTTAAT-CCAAACATG-AA-----ATT------AAAT--GTCT
gi|6 : cacagatttccaacattgtagttagaAAACGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GA-TTTTCTG-A---AA-ATAAAA------TCG---TGTTGGATTT---AATTTCGCT--G--TTT-TCTTCC-------------------AGA-CAC-GAAAA-TACACAA-AGA-----TTTAAT-TC-AACAAG-AA-----ATT------AAATACGTTTACATTA---AATGAAATTAtgaaaacttgaaaacctaattctttctaactttgatattt
gi|7 : AAATGC-A-C-AT-T----T-CTA------A-CACT---GA-AATAAA--GA-TTTTCTG-A---AA-ATAAAA--T---TCG---TGTTGGATTT---AATTTCGCT--G--TTT-TTTTCC-------------------AGA-CAC-GAAAA-TACAAAA-AAA-----ATTAAT-CC-AACATG-AA-----ACT------AAATACGTCTACATTA---AATGAAAga
gi|8 : cagAAACGCCA-C-AT-T----T-CTA------ATCACT---------AAA--GA-CTTTCTG-A---AA-ATAAAA--T---TCG---TGTTGGA-TT---AATTTCGCT--G--TTT-CTTTCC-------------------GAC-CAC-GTAAA-TACACGA-AAAC----TTTAAT-TC-AACATG-AATTTGTATT------AAATACGTCTACA
gi|9 : cagAAACGC-G-C-AT-T----T-CTA------A-CAGT---GA-GATAAA--GA-TTTTCTG-G---GG-AAAAAA--T---CC----CGTTGGGTTA---AATTTCGTT--G--TCT-TTTTTTTTTTTTTTTTTTTTTTGGGGGA-CAC-GAAAA-TA-AAGA-AAG------TTAAT-CC-AACACG-AA-----A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): AAAATTTACTTCGATTTAATTTTGGAACCATGTTTG