lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111 22222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 2 222 1111 11 3333333 11111 111111 1111 2222222 333 3333333333333 1 1111111 11 1 11 111 555555555555555555555555555555555555555555555555555555555555555555555555555555555 22 222222 1 1 333333333333333 11 333333 3333333333333 1 2 1 2 22 222222222 4444444444 1 1 777777777777777 333 2222 333 22222222222222 1 888888 1 2222222 11111111111111111111111111 11 2 22 44 2 1 22222 44 2 333333 2 555555555 1 555555 3333 4444444444444 555555555555555555555555555555555555555555555555555555555555555555 22 3333333 1 1 2 1 2222222222 2222 2 11 88888888888888888888888888888888888888888888888 222222 222222 2222222 1 1 1 3333333333333333333333333333333333333333333333333333333 1 333333 22 44444444444444444444444
lowQualScore : 111 0 66 0 5 222 1 66 1 2222 3 33 7777777 3 6 55555 55 777777 7777 9999999 1 2 000 8888888888888 0 55 99 4 4 4 6666666 1 4 77 55 4 4 4 4 2 2 4 4 00 777 4 8888 555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 1 3 11 444444 0 0 5 222222222222222 33 444444 5 66 3333333333333 0 3 3 3 3 77 9999 666666666 3 4 2222222222 3 7 3 8 666666666666666 111 3 2222 000 6 66666666666666 3 6 222222 6 2 3333333 44444444444444444444444444 88 0 4 77 22 0 3 5 66666 3 2 3 77 0 444444 7 000000000 1 0 0 3 0 7 777777 3333 0000000000000 2 777777777777777777777777777777777777777777777777777777777777777777 0 22 66 4444444 0 0 0 0 8888888888 3333 9 2 0 44 77777777777777777777777777777777777777777777777 999999 6 333333 5 7777777 8 3 3 3 2 5555555555555555555555555555555555555555555555555555555 3 7 444444 0 00 66666666666666666666666 6
lowQualScore : ... . .. . . ... . .. . .... . .. ....... . . ..... .. ...... .... ....... . . ... ............. . .. .. . . . ....... . . .. .. . . . . . . . . .. ... . .... ................................................................................. . . . .. ...... . . . ............... .. ...... . .. ............. . . . . . .. .... ......... . . .......... . . . . ............... ... . .... ... . .............. . . ...... . . ....... .......................... .. . . .. .. . . . ..... . . . .. . ...... . ......... . . . . . . ...... .... ............. . .................................................................. . .. .. ....... . . . . .......... .... . . . .. ............................................... ...... . ...... . ....... . . . . . ....................................................... . . ...... . .. ....................... .
lowQualScore : 777 8 44 0 0 888 4 11 1 5555 7 66 0000000 0 6 88888 55 000000 0000 2222222 0 1 888 0000000000000 0 55 55 0 0 0 2222222 4 0 11 55 0 0 0 0 1 0 0 0 66 666 4 6666 111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 0 5 88 000000 6 8 0 333333333333333 00 666666 6 00 5555555555555 0 2 7 3 7 55 0000 000000000 0 0 3333333333 3 0 3 3 333333333333333 000 7 3333 777 7 00000000000000 3 7 777777 7 0 7777777 33333333333333333333333333 00 0 0 55 55 0 0 0 00000 0 5 0 55 0 000000 5 777777777 0 7 7 3 7 3 333333 3333 4444444444444 5 000000000000000000000000000000000000000000000000000000000000000000 8 55 22 8888888 0 0 0 0 2222222222 5555 8 5 0 22 55555555555555555555555555555555555555555555555 000000 6 000000 0 4444444 0 2 3 3 0 3333333333333333333333333333333333333333333333333333333 3 3 333333 7 00 22222222222222222222222 0
consensus : GGCG---CGCTTACC-ATTGCGGT-CC-TAGGAA--TCACATAAA----TAGTATTA-ACAAA-C-A-GTGTAGAATAAAGCTTNC---GAT--AC----T-AAATTCTT-T--ATCA--T---GTTGAGTTTTAACC-GGTTGTAT---------TAT-ATCTATG--AT--A-AA-A-GCAA-G-----GTTCA-GTG-TCT--TCGATT-T-T-GTGGAG-AANAC-T-TT-T--AAA-TCGTAC-AATTTCGNCAAATTGT-AGAGTTGGAGAA--A-GGAGGGGG--GG--------------A------------G-----G---------------CGA-ATTCGATGTTTATTTCTGT-CCAAA--T---TAAAATGCAATTAATACCAA-ANCTTTATTTTT--AAC-AAAAGACACTAGAA-T---AAAAAGCACAATNA-ATCAGCATGTGA-TATAAT-CAAGCA-AGTA-GCATCGTTCTTAAAAAGGGGGGGGGGGGGGGGTTGACTTCNCNAT----C-TT--TAAT-CCAAGGC-TTTAAAAATTCGTA-AT-----A--GTG-AGTG-AAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAA-TTTTTATATTTCCACTACAATTCA-CGACCA------TGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGG--GGGGGGG-----------TATCCAAAGGTCCACCTCTGTTTGTAAANATTAAACACAACTCATGCGTGTACTGNATAAAANGTNGACAAACNCATCCGTTTGCTACGTGGCNTGATAAGTATTTCTGTGTA--CAT---TTCAGTAATCGCAGCGC-AAAAAGAGCTGTA-A-A--TTGATTT-ACGCAAAAT-TTTATT--TC--AAANGATTGAAT-A-ACGAAGGAGGGGGGGTATGTCGGT---TA-TATTTACANTATAAAT-A--CCAA---TTC--GAAATAATTAAANACGTTCTGTT------TA-TT-GGCA-CCTGATNTAC-ATATAGCAAC-AGGTAGATTAATTTGTCCAA-TGTAAA-TGATNAGTTATTTTTA-AAAACT-TTAAAG-TACGCTATA---ATTG--G-TTGCACATGTGATTTCAGGCATATC------TAGTTGTGTTTN------G-GTTGTCGAAAATA-TTGA-TAAAAGTAATAA-TAC-C---GA----AGAATTGCTG-ATA-TAC-CAAA-GTCA--TAGA-AT--TCCTGATTC-TGATTTGAANA-A--GTCGAGC-ACTA-G-T--AA-TATT---TAATACTATATTTG
Reference ( gi|2 ) : GGCG---CGGTTACC-AT-GCGGT-C--TAGGAA--TCACATAAA----TAGCATTA-GCAAA-G-A-G-GTAGAATAAAGCTTTT---GAT--AC----T-AAATTCTT-C--ATT---T---GCTGAGTTTTAAGC-GGTTGTAT---------TA--ATCTCTG--AT--A-AA-A-GCAA-G-----GTTCA-GTG-TCT--TCGATT-T-T-GTGGAG-AAAAC-T-TT-T--AAA-TCGTAC-AATTTCAACAAAT-G--AGAGTTAGAAAAAAAAGGAGGGGG--GG--------------G------------G-----G---------------CGA-ATTCGATGTTTATTTCTGT-ACAAA--T---TAAAATGCAATTACTACCAA-AACTTTATTTTT--AAG-AAAAGACACTAGAA-A---GAAAAGCACAACTA-ATCAGTAT-TGA-TATAATTCAAGCA-AGTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTAT----C-TT--TAAT-CCAATGC-TTTAAAATTTCGTA-A------A--GTGGAGTG-A-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATAT--AACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGC-AAGAAGAGCTGTATAAA-TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGTCATT---TA-TATTTACATT-TAAAT-AC-CCAA---TTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-G-CA-CCTGATCTAC-ATCTAGCAAC-A-GTAGATTAATTTGT-CAG-TGT-AGTTGATTAGTTATTTTT--AAAACT-TTAAAG-TACGCTATA---ATTG--G-T-GCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA-TAC-TACTGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAAGAT-TTCCTGATTC-TGATTTGAATA-A--GCCGAGG-ACTA-A-T--AA-TATT---TAATACTATATTCGCCTA
gi|1 : GGCG---CGGTTACA-AT-GCGGT-CCCTATGAA--TCAC-TAGA----TAGCATTAAGCAAA-G-A-G-TTAGA-TAAAGCTTTC---GATTTACA---T-AAAT-CTT-C--ATTATTT---GCTAAGTTTTAAACAGGTTGTAT---------TATAATCTCTG--ATT-A-AACA-GCAAAG-----GTTCA-GTGGTCT--TCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-AAA-TCG-AC-AATT--AACAAATTG--TGA-TTA----ACAAAGG--GGGG--GG--------------G------------G-----G---------------CGA-ATTCGATGTTTATTTCTGTTACAAA--T---TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AAG-AAAAGACACTAAGA-ATTTAAAAAGCA-AATGATATCA-TGG-TAA-TATA-TTCAAGCA-AGTA-GCATCGTTTTTAAAAAGGGGGGGGGGGGGGG--T-ACTTCACTAT----CCTT--TAATTCCAATGCCTTTAAAATTTCGTG-A------ATAGTG-AGTG-AAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTTAATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATAT--AACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAG-GCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAAT---AT-AAGGGGGGGGGGTC-GTCG-----TAGTA-TTACATTATAATT-A--CCAA---TTCGGGAAATAATT-AAAATGTTCTGTT------TA-TTGG-CA-CCTGATCTACGATATAGCAAC-AGGTAGATTAATTTGT-CAGTTGTAAATTGATTAGTTATTTTTAAAAAACT-TTAAAGTTACGC-ATAG--ATTGCTT-T-GCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAGTACATA-TGGTG-TAGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAATCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|5 : cagtacttcccttaacaacggatattaggaGACA---CGTTTACC-ATTGCAGT-CC-TAGGAA--TCACATAAA----TAGTATTA-ACAAA-C-A-GTGTAGAATAAATCTTTC---GAT--AC----T-AAATTCTT-T--ATCA--T---ATTGAGTTTTAACA-GGTTGTAT---------TATAATTTATG--AT--A-GA-A-GCAA-G-----GTTCA-GTG-TTA--TCGATT-T-C-ATGGAG-AAAACTT-TT-T--AAA-CTGTAC-AATTTAACCATTT-GT-AGAGTTGGAGAA-----GAGGGGG--GG--------------A------------GT----GATCAGTATATATAGCCGA-ATTCGATGTTTATTTCTGT-CCAAA--T---TAAAATGCAATCAATACCAA-AAC-TTA-------AAC-AAAAGACACTAGAATA---AAAACACACAA-TA-AT-ATCATGTGA-TATAATacactttacatttgttatacgactatactgttgcg
gi|12 : atttttgcagatattccacttacaatggatgtagggGGCGACTCGCTTACAGAT-GCAGC-C---ATGAGCTTCAGATAAAA---TAGTCTCA-TCAAA-TTA-G-GTATTGTAGAAATCAA---GGT--AT----C-AAATCCTG----ATT---TTGTGTTGATTTTT-------TTTTAT----------A--ATTTCTATCAT--A-AA-ATAAAA-A-----GTTAA-GTT-TGT--TCGATT-T-T-GTGGAT-AACAC-T-TT-ca
gi|11 : ttataatttttgtagttttttctttacgccaaaagtaGCG---CGCTTACC-ATTGCGGT-CC-TAAGAA--T---ATTAA----TAGT-----------------GTAGAATAAAG-----------------------ATTCTT-T--ATTA--T---GTTGCGTTTTAACA-GGTTGCATTACATTGTATA--ATTTATC--AT--A-AA-A-GCAA-G-----GTTCA-GTG-TCT--TCGATT-T-T-GTGGAG-AAAACTT-TT-T--GAA-TTGTAC-AA-TTCAACAAAT-AGTAGACTTCGA--------GAGGGGG--ct
gi|18 : ttcatttttgcagttacaccccttacaacggatgtagggatGTG---CGCTTAAC-ATTGGGGT-CC-TAGAAC--TCGCATAAA----TAGTATTA-ACAAATA-A-T-GCGCATTAAAG--TTTAAGGAA--AC----T-AATTTCTT-T--ATT---
gi|15 : gatgtagagaG---CGCTTACC-ATTGCGGT-C--CTCGAA--T----------------ATTA-ACCAA-T-A-GTGTAGAATAAAACATAC---GAT--ACTAATT-AAATTCTT-CA-ATC---A---ATTGAGTTTT-AGCAAGTTGTataatttatgttttgaca
gi|6 : gctacatttctgcagttgctccccttacaacggatgtacgggatTTACA-TT-GCAGT-C--CAGGAA--TCACATAAA----TAGTATGA-ACAAA-C-A-T-GTAGAATAAACGTTTC---GAT--AC----TAAAATTCTTAT--ATC---TA--GATGA-TTTTAAA--GGTCGTATA--------TA--ATTTA-A--AT--AGAA-A-GGCA-G-----G--CA-GT--TTA--TCGATT-CAT-GGGAAG-AACAC-T-TT-A--AAACTGGTA--AATGTAACCATGT-G--AG---TGGAGAA-----GAGGTGG--AG--------------ATCTAGTAAATATG-----C---------------CGA-ATTCGA---TTA--GCTGT-CCAAA------TAAAA-GCAACAAATACCAATAAC---A----G--AAC-AAAAGACATCAGAA-T---AAAA-----AACCA-AT-AATAT-CGAGTGGAAT--AAGCATAGCAAG
gi|3 : T-GCGGTAT--TAGGAA--TCACATAAA----TAGTATTA--CAAA-C-A-TTGTAGAATAAAACTTTT---GAT--AC----A-AAATTCTT-TTTATTA--T---ATTGAGTTTTAACT-GTTTGTAT---------TATAAACTATG--AT--A-AA-A-GCAA-T-----GTTTA-GTG-TCG--TCCATA-A-T-GTTGAG-AAAAC-TGTT-T--TGA-TTGTGC-CATT-CAACAAATTGT-AGAGTTAGAGAAGAAGGGTGGGGG--TGTAATTAGTATAAATA------------G-----C---------------CGA-TTTCGAAGTTTATATTCGT-CCAAA--G---TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAAC-AAACGGCACTAGAA-T---AAAAAGCTCAA-TG-AT-AGCATGTGA-TATAAT-CAGGCA-AGTA-GCATCGTTC--AAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAATAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGTAATA--GT-GAGTGAA-GACAACA-AAAGTTAATCTTTG-GATTCAA--------------TTTTTATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTAGGGAGAGGGG--------------------TATCCAAAAGTCTAC--CTGTTTGT-AAAATTAAAC--AACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCA-TCG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGC-AAAAAGAGCTGTA-A----TTGATTT-ACGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAACAGT---TA-TA-TTACACTATAAAT-A--CCAA---TTC--GAAATGATT-AACACATTTTGTT------TA-TT-GACA-CCTA----------TAACAACAA-GTAAATTAATTTGTCCAA-TGTAAAATGATAAGGTGTTTTTA-AAAACG-ATCAAG-TACGCTAT----ATTG--GTT-GCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAagatcgatt
gi|10 : accgt--TCACACAAAAGTATGGTATTA-ACA-------GTGTACAGTAA-GTTTAC---GAT--AC----C-GAATTCTT-T--GTTA--T---GCTGAGATTCAACA-GGTTGCGC---------TAT-ATCTAGG--AT--A-GA-A-ACAA-T-----GTGTA-GTT-TCTCTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--AAA--AATATGAATTTCGTCAAA-----A----TATAAGGACAAGGAAGAAG--GG--------------T------------T-----G---------------TAT-GTT--ATATCTATTTCTGT--CAAAGGTATATAAAA--CAATTAATA
gi|8 : agctAAA----CAGCATTA-ACAAA-C-ATA-GTATAGAAAAGCTTAC---AGT--GC----C-AAACTCTT-T--GTCA--T---GTTGAGTTT--ATCTGGTTGTAG---------AAT-ATCTATG--AT--G-AA-A-ACAA-G-----ATTTAAGT--TCT--TTGATT-T-T-GTGGAG-AACAC-T-TT-TTGAAA-T-GTAC-A-TTTTGTTAAATTGT-AGGGTTGGGAAAGGA-GGAGTGGGATGG--------------G------------GTTACAG---------------CCATATTTAATGTTTATTTCTGT-CCAAA--T---TAaagcgaatttcaaaagta
gi|19 : acatttctgtagttattccccttacatcagaagttgggggggggggggggggcacttatctttgtgatccttacttcattataTTCTT-C--ATCA--T---ACCGAGTTATAA-C------TAA---------TA---TCTATG--AT--A-AA-A-ACGATG-----CCTGA-ATATTCT--TTTATA-T-T-TTGGAG-AGCACAT-TT-T--AAA-AGGTAC-Ataca
gi|14 : ---T---GCTGAGTTTTAATT-GGTTGTGT---------TAT-ATCTATG--ATTAA-AA-A-GTGA-AATTATGTTTA-TTT-TTT--T--ATT-T-A-ATGGAA-AAGGC-T-TTCT--AAA-ACGTGC-tgtcgtcaagttatagggtcg
gi|9 : TTTTT--AAGCAAAGGACACTAGAA-T---AAAAAGCACAATGA-ATCAGcttttgttaaatattgaaaggttggggaggggttacatacgtattttat
gi|9 : T----T-TT--TAAT-TCAAGGC-TTTAAAAATTTGTA-AT-----A--GTG-AGTG-AAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTTATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGGAGGGGAGGGGGGgcaagtgtcagagttttgttgttgttgttttttttttaaaagggggggggggggtgacttcacaatattgcccaataactcttgcagttctttttaattcaaggctttaaaaatttgtaatagtgagtgaagatcgcaaaggttaatctttcggtccaatttatcggttaaaattttatatttccactacaatttacgacaatgtgacaagcactgtatttagaaaggaggggaggggggtgtccagatatccatct
gi|4 : tttttaagcaaaggacactagaataaaaagcacaatgaatcaggcaagtgtcagagttttgttgttgttgttttttttttaaaagggggggggggggtgacttcacaatattgcccaataactcttgcagttcTATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGC-AAAAACAACTGTA---A-GTTGATTTA---CAAAACATTTATTATTC--AAACGATTGAATCACACGCAGAA--------------------A-TATCTACAGG-TATATTGCGCTAA---------AGATAATCAACA-TGTTCTGTTACAATGTAGTT-GGCA-CCTGATGTGC-CTATAGGATC-A---AG--TAGTTT---CAT-TGT-A----ATGAGTTA----------A----TAAA--TATGC-------ACTG--G-TTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA-TAC-C---GA----AGAACT-CTG-ATA-TAC-CA---------TAGACAT-T--CTGATTC-TGG-TTGAACACA--GTCGAGC-ACCAGG-T--AA-TATT---TA----TATATTTtgtccagatatccatct
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGTCAGTAAATA-TATT-ACA----AAAG-AG-ACAAAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TG-G-GAACCTAAAATAC-ATCAAGCAAC-AAGTAGTTCAATTTGTTCAA-TAT-----GA--AATGATT------AAGCTATCAGTG-TACG-TATATTCATTG--G-TTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA-T-------GA----AGAATCGCGG-ATA-TAC--AAA-ATCA-----------TCCTGATTC-TGATTTGAAGC-T--GTCGAAC-ACTA-GTT--GA-TATT---TAttacatcatgaccatacat
gi|13 : TTG--G-TTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAATcaaatt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GCTACATATTTCTAGGTTCTCGCCCTTACAAACGATGTACGGGGCGGCGCCTACCCATTGCGGTCTCGGATATTAACCAAAATGAGAATAAAATCTTTATTTGATTGGGTTTTAACAGTTAATTGATTTA
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|20 ): AAACAAATATCTTGTTGCTTAGATTTTATAGAGGACACTTTTTTAATTGTGCATTTCGTCAAATTGAATGGCAGGG
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111
lowQualScore : 1111 1111111111 111111 111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 22222222222 11 11 1 3333333 222222222222222222222222222222 11 1 1 222222 1 1 11111 1 1 1 5555555 11 111 999999999999999999 11 33333333 2 22 1 111 2 1 111 111 33333333 1 1 1 11 111111 1111111 5555555555555555555 1 11 222222 111 1 11 111 66666666666666666666666666666666 111111 2222222 1111 666666666666666666 9999999999999999999999999 1111 222222 1 111 11111
lowQualScore : 888 0 4 99999 1 1111 3 3333333333 3 4 77 55 444444 44 3 77 44444 444 3 7 3 3 33333333 88 3 3 3 2222222 3 0 3 55 11 3 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 1 0 2222222 6 6 99 6 3 7 33333333333 6 6 11 0 8 3 99 0 2 9999999 1 1 222222222222222222222222222222 33 0 0 0 4 888888 0 3 0 3 22 6 99 3 55 6 3 0 00000 0 0 0 2 3333333 2 6 33 777 555555555555555555 33 22 2 22222222 6 3 77 6 44 7 4 1 1 888 7 7 6 77 3 5 777 777 2 0 00000000 0 0 0 33 666666 1 4444444 9999999999999999999 8 0 0 99 0 8 8 0 11 44 99 2 333333 8 3 0 44 88 0 6 111 4 3 66 111 1 6 22222222222222222222222222222222 6 4 999999 3 0000000 6 1 0000 8 8 8 000000000000000000 3 8 8 2222222222222222222222222 8 0 1 5555 8 5 222222 0 777 11111
lowQualScore : ... . . ..... . .... . .......... . . .. .. ...... .. . .. ..... ... . . . . ........ .. . . . ....... . . . .. .. . . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . . ........... . . .. . . . .. . . ....... . . .............................. .. . . . . ...... . . . . .. . .. . .. . . . ..... . . . . ....... . . .. ... .................. .. .. . ........ . . .. . .. . . . . ... . . . .. . . ... ... . . ........ . . . .. ...... . ....... ................... . . . .. . . . . .. .. .. . ...... . . . .. .. . . ... . . .. ... . . ................................ . . ...... . ....... . . .... . . . .................. . . . ......................... . . . .... . . ...... . ... .....
lowQualScore : 888 8 0 44444 2 4444 6 5555555555 6 3 22 00 666666 66 3 99 66666 888 5 3 6 6 22222222 66 6 6 6 5555555 6 4 6 00 00 3 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 0 6 5555555 7 7 22 7 5 5 88888888888 7 7 00 8 0 2 88 5 5 2222222 0 0 222222222222222222222222222222 88 0 0 2 0 888888 0 2 0 2 22 5 88 2 00 5 2 2 22222 0 0 0 5 2222222 5 5 88 555 888888888888888888 88 22 5 33333333 7 3 33 7 33 3 0 0 0 333 3 3 7 77 3 0 000 555 0 2 22222222 0 0 5 22 000000 0 6666666 6666666666666666666 0 6 8 00 8 0 0 8 00 66 66 8 000000 0 2 8 88 66 6 0 777 7 3 88 777 0 7 22222222222222222222222222222222 7 0 222222 0 2222222 7 0 8888 0 2 0 222222222222222222 8 0 0 2222222222222222222222222 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACCATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--ATTAT--G--CTGAGTTTTAACN-GGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACT-AGAA--TAAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGGGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----CTT--TAA-TCCAA-GGCTTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTT-AA-TTTTT-ATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGA-GGGGGG-----------GGGGGGGGGG--TATCCAAAGATCCACCTCTGTTTGTAAATAT-AA-CACAACT-ATGAATGTACT-TATAAAA-GTGGACAAACTCATCCGTTTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTAT-AA---TT-GATTTA-CGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGTCAGT---TA-TATTTACAN-TATAA-ATACC-AATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTT-AAAAAC-TTAAAG-TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA-TAC------C---GA----AGAATTGCTG-ATA-TAC-TAAA-GTCAG-TA--GA-AT--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACCATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--ATCAT--G--TTGAGTTTTAACC-GGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-ANCTTTATTTTT--AA-CAAAAGACACT-AGAA--TAAAAA-GCACAATNA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTCTTAAAAAGGGGGGGGGGGGGGGGTTGACTTCNCNA-------------------------T----CTT--TAA-TCCAA-GGCTTTAAAAATTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTT-AA-TTTTT-ATATTTCCACTACAATTCA-CGACCA------TGTGAGCCAGGCACTG--TT---TAGAGGGGGGG-----------GGGGGGGGGG--TATCCAAAGGTCCACCTCTGTTTGTAAANATTAAACACAACTCATGCGTGTACTGNATAAAANGTNGACAAACNCATCCGTTTGCTACGTGGCNTGATAAGTATTTCTGTGTA--CAT---TTCAGTAATCGCAGCGCAAAAAGAGCTGTA--AA---TT-GATTTA-CGCAAAAT-TTTATT--TC--AAANGATTGAAT-A-ACGAAGGAGGGGGGGTATGTCGGT---TA-TATTTACAN-TATAA-ATACC-AATTC--GAAATAATTAAANACGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAGGTAGATTAATTTGTCC--AATGT-AAA-TGA---TNA-GTTATTTTT-AAAAACTTTAAAG-TACGCTATA---ATTG-GTTGCACATGTGATTTCAGGCATATC------TAGTTGTGTTTN------G-GTTGTCGAAAATA-TTGA-TAAAAGTAATAA-TAC------C---GA----AGAATTGCTG-ATA-TAC-CAAA-GTCA--TA--GA-AT--TCCTGATTC-TGATTTGAANA-A--GTCGA-GCACTA-G-T--AA-TATT---TAATACTATATTTG
gi|1 : GGCG---CGGTTACAAT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--ATTATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GT-TCA-G--TGGT-CTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGC-ATTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCATG----GTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAA-GGGGGGGGGGGGGGGT--ACTTCACTA-------------------------TC---CTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATC-TTGCGGT-CAATTTATCGCGTT-AATTTTTT-ATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGA------G-----------GGGGGGGGGG--TATCCAAAGATCCACCTCTGTTTGTAAATAT--AACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTAT-AAATTTT-GATTTA-CACAAAAT-TTTATT--TTCAAAAGGATTGAAT-A---TAAGGGGGGGGGGT-CGTCG-----TAGTA-TTACAT-TATAA-TTACC-AATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA-GTTATTTTTAAAAAACTTTAAAGTTACGC-ATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAGTACATATGGT---GT----AGAATTGCTGAATATTACTTAAATGTCAGTTA--AAGATAATCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GTTAT--G--CTGAGATTCAACA-GGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GT-GTA-GTTTC-T-CTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACCATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--ATTAT--G--TTGCGTTTTAACA-GGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACAGATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---TTGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GT-TAA-G--TT-T-GTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA-GTTAAT-------AA--TTACA--TGCG---------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA-T------------GA----AAAA-TGCTG-ATT-GAT-TAAA------------A-A-------GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAATT-GGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGT-TTA-T--TT-T-TTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACCATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-ATCA---A--TTGAGTTTTAGCA-AGTTGTttacatacgtattttat
gi|18 : gctacatttctgcagttgctccccttacaacggatgtacgggatGTG---CGCTTAACATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--ATTAT--AATTTATGTTTTGAC
gi|19 : gatgtagagaTTCT--T-C--ATCAT--A--CCGAGTTATAAC-------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGA-T-----GCCTGA-A--TA-TTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCGa
gi|2 : GGCG---CGGTTACCAT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--ATT-T--G--CTGAGTTTTAAGC-GGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACT-AGAA--AGAAAA-GCACAACTA-ATCA-G-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTT--TAAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----CTT--TAA-TCCAA-TGCTTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTT-AA-TTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGTAA-TAT-AACCA-AACT-ATGAATGTACT-TATAAAA-GTGGACAAACTC--TCGTT-GCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAA---TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGTCATT---TA-TATTTACAT-T-TAA-ATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TTG-CACCTGATCTAC-ATCTAGCAACAG-TAGATTAATTTGTC---AGTGT-AGT-TGA---TTA-GTTATTTTT-AAAA-CTTTAAAG-TACGCTATA---ATTG-GT-GCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA-TAC------TACTGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAAGA-TT--TCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : -CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACCGTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTATTAT--A--TTGAGTTTTAACT-GTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GT-TTA-G--TG-T-CGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACT-AGAA--TAAAAA-GCTCAATGA---TA-G-CATGTGATATAAT-CA-GGCAA--GTA-GCATCGTTC--AAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGCCTAATAA-TCCAA-GACTCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTC--------------AA-TTTTT-ATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA------------------GGGAGAGGGG--TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAA--ACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTGT---AA---TT-GATTTA-CGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAACAGT---TA-TA-TTACAC-TATAA-ATACC-AATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAA-GGTGTTTTT-AAAAACGATCAAG-TACGCTAT----ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA--AG---TT-GATTTA-C--AAAACATTTATTATTC--AAACGATTGAATCACACGCAGAA--------------------A-TATCTACAGGTATATTGCGCT-AA------AGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA-GTTA----------A---TAAA--TATGC-------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA-TAC------C---GA----AGAACT-CTG-ATA-TAC--------CA--TA--GACAT--T-CTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACCATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--ATCAT--A--TTGAGTTTTAACA-GGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GT-TCA-G--TG-T-TATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACT-AGAA--TAAAAACACACAAT-A-AT-A-T-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC-ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA--G--ATGA-TTTTAA-A-GGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G---CA-G--T--T-TATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATC-AGAA--TAAAAA-AC-CAATAATATCG-A----GTGGAATAAG-CATAGCAA--G-A-G-ATCG
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGTCAGTAAATA-TATT-ACAA-AAGAG-ACAAA-AATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAAGCTATC-------------AGTG-TACG-TATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA-T------------GA----AGAATCGCGG-ATA-TAC--AAA-ATCA--T-----------CCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TAatt
gi|8 : GGGG---CACTTATCTTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GTCAT--G--TTGAGTTT-ATCT-GGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----AT-TTAAG--T--T-CTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACT-AGAA--TAAAAA-GCACAATGA-ATCA-GGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAAGGGGGGGGGGGGG-----TGACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----TTT--TAA-TTCAA-GGCTTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAA-ATTTT-ATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGA-AAGGAG-----------GGGAGGGGGG--TGTCCAGATATCCATCTtaca
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GCTACATATTTCTAGGTTCTCGCCCTTACAAACGATGTACGGGGCGGCGCCTACCCATTGCGGTCTCGGATATTAACCAAAATGAGAATAAAATCTTTATTTGATTGGGTTTTAACAGTTAATTGATTTA
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 111 11111 1111 1111111111 1111111111111111111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 22222222222 11 1111 22 11111111111111111111111111111111 11 1 1 222222 1 1 111 11111 2 1 333333 11 111 33333 44444444444 1 1 1 111 2 1 2 111 111 333 1 1 11 111111 1111111 222222222 111 111 11 222222 1 11 111 666666666666666666666666666666666 111111 2222222 1111 5555555555555555555 11 777777777777777777 1111 222222 1 111 11111
lowQualScore : 222 3 66 1 22222 33 0000 3 5555555555 3 5555555555555555555 44 3 77 3 33 777 666 3 7 3 3 33333333 88 3 3 3 3333333 0 3 55 44 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 0 0 2222222 6 6 99 6 3 5 33333333333 6 6 11 0 8 3 6 44 7777 2 00 44 1 66666666666666666666666666666666 33 0 2 0 1 888888 0 3 0 3 22 6 99 222 55 0 00000 0 0 2 777777 2 6 33 777 66 22222 77777777777 0 2 7 7 3 6 3 3 888 3 6 6 3 0 777 777 0 333 111 0 0 33 666666 4444444 666666666 8 0 444 222 1 66 1 8 11 44 55 333333 8 0 44 88 0 0 6 5 99 1 3 66 111 1 6 555555555555555555555555555555555 6 1 999999 1 0000000 6 1 0000 8 8 9999999999999999999 3 8 8 11 0 888888888888888888 8 0 1 5555 8 1 222222 0 777 11111
lowQualScore : ... . .. . ..... .. .... . .......... . ................... .. . .. . .. ... ... . . . . ........ .. . . . ....... . . .. .. . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . . ........... . . .. . . . . .. .... . .. .. . ................................ .. . . . . ...... . . . . .. . .. ... .. . ..... . . . ...... . . .. ... .. ..... ........... . . . . . . . . ... . . . . . ... ... . ... ... . . .. ...... ....... ......... . . ... ... . .. . . .. .. .. ...... . . .. .. . . . . .. . . .. ... . . ................................. . . ...... . ....... . . .... . . ................... . . . .. . .................. . . . .... . . ...... . ... .....
lowQualScore : 222 6 55 2 22222 44 4444 3 4444444444 3 5555555555555555555 22 1 33 1 99 777 222 5 3 6 6 22222222 66 6 6 6 8888888 4 6 00 66 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 6 6 5555555 7 7 22 7 5 2 88888888888 7 7 00 8 0 2 0 00 0000 5 55 22 0 22222222222222222222222222222222 88 0 5 0 0 888888 0 2 0 2 22 5 88 000 88 2 22222 0 0 5 888888 5 5 88 555 88 88888 55555555555 2 5 3 3 3 7 3 3 333 7 7 7 3 0 000 555 2 555 222 0 5 22 000000 6666666 000000000 0 8 000 222 0 44 0 0 00 66 88 000000 0 8 88 66 6 8 0 2 22 0 3 88 777 0 7 222222222222222222222222222222222 7 0 222222 0 2222222 7 0 8888 0 2 2222222222222222222 8 0 0 88 8 000000000000000000 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTT-AATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAAT-TTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--TT-TAAAG-TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAGT-A-AGA-ATTCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--CTGAGTTTTAA-CNGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGGGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAAGGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTT-AATTTTT-ATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCGTTTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAA---TTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACANTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--CT-TAAAG-TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAGT---AGA-ATTCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
gi|1 : GGCG---CGGTTACA-AT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--AT-TATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GTTCA-G--TGGTCTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCATG----GTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAA-GGGGGGGGGGGGGGGT--ACTTCACTA-------------------------T----CCTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTT-AATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAAT-A---TAAGGGGGGGGGGT-CGT-C-GT---AGTA-TTACATTATAATTA-CCAATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA-GTTATTTTTAAAAAACTT-TAAAGTTACGC-ATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAG--TACATATGGTGT----AGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAATCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GT-TAT--G--CTGAGATTCAA-CAGGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GTGTA-GTTTC-TCTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACC-ATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--AT-TAT--G--TTGCGTTTTAA-CAGGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACA-GATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---T-TGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GTTAA-G--TT-TGTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA-GTTAAT------AA---T-TACA--TGCG---------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA---T---------GA----AAAA-TGCTG-ATT-GAT-TAAA------------A-A-----GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAA-TTGGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGTTTA-T--TT-TTTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACC-ATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-AT-CA---A--TTGAGTTTTAG-CAAGTTGTttacatacgtattttat
gi|16 : gctacatttctgcagttgctccccttacaacggatgtacgggatGGCGG--CGCCTACCCATTGCGGTC--TCGGA---------------------TATTAA-CCAA--A--A----TG-AGAA-TAAAA-----------------------TCT--T-T--AT-T-T--GA-TTGGGTTTTAA-CAG
gi|18 : gctacatatttctaggttctcgcccttacaaacgatgtacggGTG---CGCTTAAC-ATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--AT-TAT--AATTTATGTTTTGA-Cttaattgattta
gi|19 : gatgtagagaTTCT--T-C--AT-CAT--A--CCGAGTTATAA-C------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGATG-----CCTGA-A--TATTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCGa
gi|2 : GGCG---CGGTTACC-AT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--AT-T-T--G--CTGAGTTTTAA-GCGGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACTA-GAAA--GAAAA-GCACAACTA-ATCA-G-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----C-TT--TAAT-CCAATGC-TTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTT-AATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATATAACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAAT-TTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGT-CATT---TATATTTACATT-TAAATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-GCACCTGATCTAC-ATCTAGCAAC-AGTAGATTAATTTGT-C--AGTGT-AGT-TGA---TTA-GTTATTTTTAAAAC--TT-TAAAG-TACGCTATA---ATTG-G-TGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAATACTAC------TGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAGTAA-AGA-TTTCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACC-GTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTAT-TAT--A--TTGAGTTTTAA-CTGTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GTTTA-G--TG-TCGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACTA-GAAT--AAAAA-GCTCAATGA---TA-G-CATGTGATATAAT-CA-GGCAA--GTA-GCATCG--TTCAAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTC--------------AATTTTT-ATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA---------GGGAGAGGGG-----------TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAAACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTG--TAA---TTGATTT-ACGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAA-CAGT---TATA-TTACACTATAAATA-CCAATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAA-GGTGTTTTTAAAAA--CGATCAAG-TACGCTAT----ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : -TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA-AG---TTGATTT-AC--AAAACATTTATTATTC--AAACGATTGAATCACACGCAGAAA------TATCTACAGG---TATATT-GCGCTA----------------AAGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA-GTTA---------A-----TAAA--TATGC-------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA---TAC------CGA----AGAACT-CTG-ATA-TAC-CA--------T---AGACATT-CTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACC-ATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--AT-CAT--A--TTGAGTTTTAA-CAGGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GTTCA-G--TG-TTATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACTA-GAAT--AAAAACACACAAT-A-AT-A-T-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC--ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA---G--ATGA-TTTTAA--AGGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G--CA-G--T--TTATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATCA-GAAT--AAAAA-AC-CAATAATATCG-A----GTGGAATAAG-CATAGCAA--G-A-G-ATCGATT
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGT-CAGTAAATATATT-ACAAAAGAGACA-AAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAAGCTATC--------------AGTG-TACG-TATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA---T---------GA----AGAATCGCGG-ATA-TAC--AAA-ATCA-----------TCCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TA
gi|8 : GGGG---CACTTATC-TTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GT-CAT--G--TTGAGTTT-AT-CTGGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----ATTTAAG--T--TCTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-GGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAA----GGGGGGGGGGGGGT-GACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----T-TT--TAAT-TCAAGGC-TTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTT-ATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGG---AGGGGAGGGGGG-----------TGTCCAGATATCCATCTtaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 111 11111 1111 1111111111 1111111111111111111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 22222222222 11 1111 22 11111111111111111111111111111111 11 1 1 222222 1 1 111 1 1 333333 11 111 33333 44444444444 1 1 1 111 1 1 2 111 111 333333 1 1 11 111111 1111111 222222222 111 111 11 222222 1 11 111 555555555555555555555555555555555 111111 2222222 1111 5555555555555555555 111111 66666666666 1111 222222 1 111 11111
lowQualScore : 222 3 66 1 22222 33 0000 3 5555555555 3 5555555555555555555 44 3 77 3 33 66 444 3 7 3 3 33333333 88 3 3 3 2222222 3 0 3 55 11 3 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 0 0 2222222 6 6 99 6 3 5 33333333333 6 6 11 0 8 3 6 44 3333 2 00 44 1 66666666666666666666666666666666 33 0 1 0 1 888888 0 3 0 3 22 6 99 222 2 3 0 0 3 0 2 777777 2 6 33 777 66 22222 77777777777 0 2 7 7 3 6 3 3 888 3 6 6 3 0 777 777 0 111111 0 0 33 666666 4444444 666666666 8 0 444 222 1 66 1 8 11 44 55 333333 8 0 44 88 0 0 6 5 99 1 3 66 111 1 6 999999999999999999999999999999999 6 1 999999 1 0000000 6 1 0000 8 8 9999999999999999999 3 8 88 777777 99999999999 8 0 1 5555 8 1 222222 0 777 11111
lowQualScore : ... . .. . ..... .. .... . .......... . ................... .. . .. . .. .. ... . . . . ........ .. . . . ....... . . . .. .. . . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . . ........... . . .. . . . . .. .... . .. .. . ................................ .. . . . . ...... . . . . .. . .. ... . . . . . . . ...... . . .. ... .. ..... ........... . . . . . . . . ... . . . . . ... ... . ...... . . .. ...... ....... ......... . . ... ... . .. . . .. .. .. ...... . . .. .. . . . . .. . . .. ... . . ................................. . . ...... . ....... . . .... . . ................... . . .. ...... ........... . . . .... . . ...... . ... .....
lowQualScore : 222 6 55 2 22222 44 4444 3 4444444444 3 5555555555555555555 22 1 33 1 99 88 666 5 3 6 6 22222222 66 6 6 6 5555555 6 4 6 00 00 3 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 6 6 5555555 7 7 22 7 5 2 88888888888 7 7 00 8 0 2 0 00 5555 5 55 22 0 22222222222222222222222222222222 88 0 0 0 0 888888 0 2 0 2 22 5 88 000 5 2 2 0 5 0 5 888888 5 5 88 555 88 88888 55555555555 2 5 3 3 3 7 3 3 333 3 7 7 3 0 000 555 2 888888 0 5 22 000000 6666666 000000000 0 8 000 222 4 44 0 0 00 66 88 000000 0 8 88 66 6 8 0 2 22 0 3 88 777 0 7 333333333333333333333333333333333 7 0 222222 0 2222222 7 0 8888 0 2 2222222222222222222 8 0 88 222222 00000000000 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--TT-T-AAG-TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAGT--AAGA-A-TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--TT-TAAAG-TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAGT--AAGA-ATTCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
gi|1 : GGCG---CGGTTACA-AT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--AT-TATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GT-TCA-G--TGGT-CTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCATG----GTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAGG-GGGGGGGGGGGGGT--ACTTCACTA-------------------------T----CCTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTTAATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAAT-A---TAAGGGGGGGGGGT-CGT-C-GT---AGTA-TTACATTATAATTA-CCAATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA-GTTATTTTTAAAAAACTT-TAAAGTTACGC-ATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAG--TACATATGGTGT----AGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAATCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GT-TAT--G--CTGAGATTCAA-CAGGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GT-GTA-GTTTC-T-CTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACC-ATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--AT-TAT--G--TTGCGTTTTAA-CAGGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACA-GATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---T-TGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GT-TAA-G--TT-T-GTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA-GTTAAT------AA--TT---ACA-TGCG---------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA---T---------GA----AAAA-TGCTG-AT------------TGATT--AAAA-A-----GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAA-TTGGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGT-TTA-T--TT-T-TTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACC-ATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-AT-CA---A--TTGAGTTTTAG-CAAGTTGTttacatacgtattttat
gi|16 : gctacatttctgcagttgctccccttacaacggatgtacgggatGGCGG--CGCCTACCCATTGCGGTC--TCGGA---------------------TATTAA-CCAA--A--A----TG-AGAA-TAAAA-----------------------TCT--T-T--AT-T-T--GA-TTGGGTTTTAA-CAG
gi|18 : gctacatatttctaggttctcgcccttacaaacgatgtacggGTG---CGCTTAAC-ATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--AT-TAT--AATTTATGTTTTGA-CAttaattgattta
gi|19 : gatgtagagaTTCT--T-C--AT-CAT--A--CCGAGTTATAA-C------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGA-T-----GCCTGA-A--TA-TTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCG
gi|2 : GGCG---CGGTTACC-AT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--AT-T-T--G--CTGAGTTTTAA-GCGGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACTA-GAAA--GAAAA-GCACAACTA-ATCA-G-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----C-TT--TAAT-CCAATGC-TTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATATAACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAA-TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGT-CATT---TATATTTACATT-TAAATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-GCACCTGATCTAC-ATCTAGCAAC-AGTAGATTAATTTGT-C--AGTGT-AGT-TGA---TTA-GTTATTTTTAAAAC--TT-TAAAG-TACGCTATA---ATTG-G-TGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAATACTAC------TGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAGTA-AAGA-TTTCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : -CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACC-GTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTAT-TAT--A--TTGAGTTTTAA-CTGTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GT-TTA-G--TG-T-CGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACTA-GAAT--AAAAA-GCTCAATGA---TA-G-CATGTGATATAAT-CA-GGCAA--GTA-GCATCG--TTCAAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTCAA--------------TTTTTATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA---------GGGAGAGGGG-----------TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAAACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTGTA-A----TTGATTT-ACGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAA-CAGT---TATA-TTACACTATAAATA-CCAATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAA-GGTGTTTTTAAAAA--CGATCAAG-TACGCTAT----ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : -TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA---A-GTTGATTT-AC--AAAACATTTATTATTC--AAACGATTGAATCACACGCAGAAA------TATCTACAGG---TATATT-GCGCTA----------------AAGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA-GTTA---------A--T----AAA-TATGC-------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA---TAC------CGA----AGAACT-CTG-ATA-TAC-CATA-GACA-----------TTCTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACC-ATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--AT-CAT--A--TTGAGTTTTAA-CAGGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GT-TCA-G--TG-T-TATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACTA-GAAT--AAAAACACACAAT-A-AT-A-T-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC--ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA---G--ATGA-TTTTAA--AGGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G---CA-G--T--T-TATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATCA-GAAT--AAAAA-AC-CAATAATATCG-A----GTGGAATAAG-CATAGCAA--G-A-G-ATCGATT
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGT-CAGTAAATATATT-ACAAAAGAGACA-AAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAAGCTATC------AG--T------G-TACG-TATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA---T---------GA----AGAATCGCGG-ATA-TAC--AAA-ATCA-----------TCCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TA
gi|8 : GGGG---CACTTATC-TTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GT-CAT--G--TTGAGTTT-AT-CTGGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----AT-TTAAG--T--T-CTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-GGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAA----GGGGGGGGGGGGGT-GACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----T-TT--TAAT-TCAAGGC-TTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTTATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGG---AGGGGAGGGGGG-----------TGTCCAGATATCCATCTtaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 111 11111 1111 1111111111 1111111111111111111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 22222222222 11 1111 22 11111111111111111111111111111111 11 1 1 222222 1 1 111 1 1 333333 11 111 33333 44444444444 1 1 1 111 1 1 2 111 111 333333 1 1 11 111111 1111111 222222222 111 111 11 222222 1 11 111 66666666666666666666666666666666666 111111 2222222 1111 5555555555555555555 555555555555555555555555 1111 222222 1 111 11111
lowQualScore : 222 3 66 1 22222 33 0000 3 5555555555 3 5555555555555555555 44 3 77 3 33 66 444 3 7 3 3 33333333 88 3 3 3 3333333 0 3 55 44 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 0 0 2222222 6 6 99 6 3 5 33333333333 6 6 11 0 8 3 6 44 3333 2 00 44 1 66666666666666666666666666666666 33 0 1 0 1 888888 0 3 0 3 22 6 99 222 2 3 0 0 3 0 2 777777 2 6 33 777 66 22222 77777777777 0 2 7 7 3 6 3 3 888 3 6 6 3 0 777 777 0 111111 0 0 33 666666 4444444 666666666 8 0 444 222 1 66 1 8 11 44 55 333333 8 0 44 88 0 0 6 5 99 1 3 66 111 1 6 55555555555555555555555555555555555 6 1 999999 1 0000000 6 1 0000 8 8 9999999999999999999 3 8 88 888888888888888888888888 8 0 1 5555 8 1 222222 0 777 11111
lowQualScore : ... . .. . ..... .. .... . .......... . ................... .. . .. . .. .. ... . . . . ........ .. . . . ....... . . .. .. . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . . ........... . . .. . . . . .. .... . .. .. . ................................ .. . . . . ...... . . . . .. . .. ... . . . . . . . ...... . . .. ... .. ..... ........... . . . . . . . . ... . . . . . ... ... . ...... . . .. ...... ....... ......... . . ... ... . .. . . .. .. .. ...... . . .. .. . . . . .. . . .. ... . . ................................... . . ...... . ....... . . .... . . ................... . . .. ........................ . . . .... . . ...... . ... .....
lowQualScore : 222 6 55 2 22222 44 4444 3 4444444444 3 5555555555555555555 22 1 33 1 99 88 666 5 3 6 6 22222222 66 6 6 6 8888888 4 6 00 66 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 6 6 5555555 7 7 22 7 5 2 88888888888 7 7 00 8 0 2 0 00 5555 5 55 22 0 22222222222222222222222222222222 88 0 0 0 0 888888 0 2 0 2 22 5 88 000 5 2 2 0 5 0 5 888888 5 5 88 555 88 88888 55555555555 2 5 3 3 3 7 3 3 333 3 7 7 3 0 000 555 2 888888 0 5 22 000000 6666666 000000000 0 8 000 222 4 44 0 0 00 66 88 000000 0 8 88 66 6 8 0 2 22 0 3 88 777 0 7 22222222222222222222222222222222222 7 0 222222 0 2222222 7 0 8888 0 2 2222222222222222222 8 0 88 888888888888888888888888 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAGT--AAA--AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAGT--AAG--AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
gi|1 : GGCG---CGGTTACA-AT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--AT-TATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GTTCA-G--TGGTCTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCATG----GTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAGG-GGGGGGGGGGGGGT--ACTTCACTA-------------------------T----CCTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTTAATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAAT-A---TAAGGGGGGGGGGT-CGT-C-GT---AGTA-TTACATTATAATTA-CCAATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA-GTTATTTTTAAAAAACT--TT-AAAGTTACGC-ATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAG--TACATATGGTGT----AGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAA--TCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GT-TAT--G--CTGAGATTCAA-CAGGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GTGTA-GTTTC-TCTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACC-ATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--AT-TAT--G--TTGCGTTTTAA-CAGGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACA-GATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---T-TGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GTTAA-G--TT-TGTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA-GTTAAT------AA--T--T--ACA--TGCG---------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA---T---------GA----AAAA-TGCTG-AT------------TGATT--AAA--AA------GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAA-TTGGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGTTTA-T--TT-TTTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACC-ATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-AT-CA---A--TTGAGTTTTAG-CAAGTTGTttacatacgtattttat
gi|16 : gctacatttctgcagttgctccccttacaacggatgtacgggatGGCGG--CGCCTACCCATTGCGGTC--TCGGA---------------------TATTAA-CCAA--A--A----TG-AGAA-TAAAA-----------------------TCT--T-T--AT-T-T--GA-TTGGGTTTTAA-CAG
gi|18 : gctacatatttctaggttctcgcccttacaaacgatgtacggGTG---CGCTTAAC-ATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--AT-TAT--AATTTATGTTTTGA-CAttaattgattta
gi|19 : gatgtagagaTTCT--T-C--AT-CAT--A--CCGAGTTATAA-C------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGATG-----CCTGA-A--TATTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCG
gi|2 : GGCG---CGGTTACC-AT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--AT-T-T--G--CTGAGTTTTAA-GCGGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACTA-GAAA--GAAAA-GCACAACTA-ATCA-G-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----C-TT--TAAT-CCAATGC-TTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATATAACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAA-TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGT-CATT---TATATTTACATT-TAAATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-GCACCTGATCTAC-ATCTAGCAAC-AGTAGATTAATTTGT-C--AGTGT-AGT-TGA---TTA-GTTATTTTTAAAAC--T--TTAAAG--TACGCTATA---ATTG-G-TGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAATACTAC------TGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAGT--AAA--GATTTCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACC-GTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTAT-TAT--A--TTGAGTTTTAA-CTGTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GTTTA-G--TG-TCGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACTA-GAAT--AAAAA-GCTCAATGA---TA-G-CATGTGATATAAT-CA-GGCAA--GTA-GCATCG--TTCAAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTCAA--------------TTTTTATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA---------GGGAGAGGGG-----------TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAAACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTGTA-A----TTGATTT-ACGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAA-CAGT---TATA-TTACACTATAAATA-CCAATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAA-GGTGTTTTTAAAAA--CGATC-AAG--TACGCTAT----ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : -TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA---A-GTTGATTT-AC--AAAACATTTATTATTC--AAACGATTGAATCACACGCAGAAA------TATCTACAGG---TATATT-GCGCTA----------------AAGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA-GTTA---------A--T-----AAA--TATGC-------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA---TAC------CGA----AGAACT-CTG-ATA-TAC-CATA-GAC-----------A--TTCTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACC-ATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--AT-CAT--A--TTGAGTTTTAA-CAGGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GTTCA-G--TG-TTATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACTA-GAAT--AAAAACACACAAT-A-AT-A-T-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC--ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA---G--ATGA-TTTTAA--AGGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G--CA-G--T--TTATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATCA-GAAT--AAAAA-AC-CAATAATATCG-A----GTGGAATAAG-CATAGCAA--G-A-G-ATCGATT
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGT-CAGTAAATATATT-ACAAAAGAGACA-AAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAAGCTATC------AG--T-------G--TACG-TATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA---T---------GA----AGAATCGCGG-ATA-TAC--AAA-ATC-----------A--TCCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TA
gi|8 : GGGG---CACTTATC-TTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GT-CAT--G--TTGAGTTT-AT-CTGGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----ATTTAAG--T--TCTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-GGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAA----GGGGGGGGGGGGGT-GACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----T-TT--TAAT-TCAAGGC-TTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTTATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGG---AGGGGAGGGGGG-----------TGTCCAGATATCCATCTtaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 111 11111 1111 1111111111 1111111111111111111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 22222222222 11 1111 22 11111111111111111111111111111111 11 1 1 222222 1 1 111 1 1 333333 11 111 33333 44444444444 1 1 1 111 1 1 2 111 111 333333 1 1 11 111111 1111111 222222222 111 111 11 222222 1 11 111 66666666666666666666666666666666666 111111 2222222 1111 5555555555555555555 555555555555555555555555 1111 222222 1 111 11111
lowQualScore : 222 3 66 1 22222 33 0000 3 5555555555 3 5555555555555555555 44 3 77 3 33 66 444 3 7 3 3 33333333 88 3 3 3 3333333 0 3 55 44 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 0 0 2222222 6 6 99 6 3 5 33333333333 6 6 11 0 8 3 6 44 3333 2 00 44 1 66666666666666666666666666666666 33 0 1 0 1 888888 0 3 0 3 22 6 99 222 2 3 0 0 3 0 2 777777 2 6 33 777 66 22222 77777777777 0 2 7 7 3 6 3 3 888 3 6 6 3 0 777 777 0 111111 0 0 33 666666 4444444 666666666 8 0 444 222 1 66 1 8 11 44 55 333333 8 0 44 88 0 0 6 5 99 1 3 66 111 1 6 55555555555555555555555555555555555 6 1 999999 1 0000000 6 1 0000 8 8 9999999999999999999 3 8 88 000000000000000000000000 8 0 1 5555 8 1 222222 0 777 11111
lowQualScore : ... . .. . ..... .. .... . .......... . ................... .. . .. . .. .. ... . . . . ........ .. . . . ....... . . .. .. . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . . ........... . . .. . . . . .. .... . .. .. . ................................ .. . . . . ...... . . . . .. . .. ... . . . . . . . ...... . . .. ... .. ..... ........... . . . . . . . . ... . . . . . ... ... . ...... . . .. ...... ....... ......... . . ... ... . .. . . .. .. .. ...... . . .. .. . . . . .. . . .. ... . . ................................... . . ...... . ....... . . .... . . ................... . . .. ........................ . . . .... . . ...... . ... .....
lowQualScore : 222 6 55 2 22222 44 4444 3 4444444444 3 5555555555555555555 22 1 33 1 99 88 666 5 3 6 6 22222222 66 6 6 6 8888888 4 6 00 66 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 6 6 5555555 7 7 22 7 5 2 88888888888 7 7 00 8 0 2 0 00 5555 5 55 22 0 22222222222222222222222222222222 88 0 0 0 0 888888 0 2 0 2 22 5 88 000 5 2 2 0 5 0 5 888888 5 5 88 555 88 88888 55555555555 2 5 3 3 3 7 3 3 333 3 7 7 3 0 000 555 2 888888 0 5 22 000000 6666666 000000000 0 8 000 222 4 44 0 0 00 66 88 000000 0 8 88 66 6 8 0 2 22 0 3 88 777 0 7 22222222222222222222222222222222222 7 0 222222 0 2222222 7 0 8888 0 2 2222222222222222222 8 0 88 888888888888888888888888 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
gi|1 : GGCG---CGGTTACA-AT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--AT-TATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GTTCA-G--TGGTCTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCATG----GTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAGG-GGGGGGGGGGGGGT--ACTTCACTA-------------------------T----CCTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTTAATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAAT-A---TAAGGGGGGGGGGT-CGT-C-GT---AGTA-TTACATTATAATTA-CCAATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA-GTTATTTTTAAAAAACT--TT-AAAGTTACGC-ATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAG--TACATATGGTGT----AGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAA--TCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GT-TAT--G--CTGAGATTCAA-CAGGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GTGTA-GTTTC-TCTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACC-ATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--AT-TAT--G--TTGCGTTTTAA-CAGGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACA-GATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---T-TGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GTTAA-G--TT-TGTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA-GTTAAT------AA--T--T--ACA--TGCG---------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA---T---------GA----AAAA-TGCTG-AT------------TGAT-TAAA---AA------GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAA-TTGGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGTTTA-T--TT-TTTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACC-ATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-AT-CA---A--TTGAGTTTTAG-CAAGTTGTttacatacgtattttat
gi|16 : gctacatttctgcagttgctccccttacaacggatgtacgggatGGCGG--CGCCTACCCATTGCGGTC--TCGGA---------------------TATTAA-CCAA--A--A----TG-AGAA-TAAAA-----------------------TCT--T-T--AT-T-T--GA-TTGGGTTTTAA-CAG
gi|18 : gctacatatttctaggttctcgcccttacaaacgatgtacggGTG---CGCTTAAC-ATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--AT-TAT--AATTTATGTTTTGA-CAttaattgattta
gi|19 : gatgtagagaTTCT--T-C--AT-CAT--A--CCGAGTTATAA-C------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGATG-----CCTGA-A--TATTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCG
gi|2 : GGCG---CGGTTACC-AT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--AT-T-T--G--CTGAGTTTTAA-GCGGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACTA-GAAA--GAAAA-GCACAACTA-ATCA-G-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----C-TT--TAAT-CCAATGC-TTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATATAACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAA-TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGT-CATT---TATATTTACATT-TAAATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-GCACCTGATCTAC-ATCTAGCAAC-AGTAGATTAATTTGT-C--AGTGT-AGT-TGA---TTA-GTTATTTTTAAAAC--T--TTAAAG--TACGCTATA---ATTG-G-TGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAATACTAC------TGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---GATTTCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACC-GTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTAT-TAT--A--TTGAGTTTTAA-CTGTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GTTTA-G--TG-TCGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACTA-GAAT--AAAAA-GCTCAATGA---TA-G-CATGTGATATAAT-CA-GGCAA--GTA-GCATCG--TTCAAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTCAA--------------TTTTTATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA---------GGGAGAGGGG-----------TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAAACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTGTA-A----TTGATTT-ACGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAA-CAGT---TATA-TTACACTATAAATA-CCAATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAA-GGTGTTTTTAAAAA--CGATC-AAG--TACGCTAT----ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : -TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA---A-GTTGATTT-AC--AAAACATTTATTATTC--AAACGATTGAATCACACGCAGAAA------TATCTACAGG---TATATT-GCGCTA----------------AAGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA-GTTA---------A--T-----AAA--TATGC-------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA---TAC------CGA----AGAACT-CTG-ATA-TAC-CA---------TAGA---CA--TTCTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACC-ATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--AT-CAT--A--TTGAGTTTTAA-CAGGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GTTCA-G--TG-TTATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACTA-GAAT--AAAAACACACAAT-A-AT-A-T-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC--ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA---G--ATGA-TTTTAA--AGGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G--CA-G--T--TTATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATCA-GAAT--AAAAA-AC-CAATAATATCG-A----GTGGAATAAG-CATAGCAA--G-A-G-ATCGATT
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGT-CAGTAAATATATT-ACAAAAGAGACA-AAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAAGCTATC------AG--T-------G--TACG-TATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA---T---------GA----AGAATCGCGG-ATA-TAC--AAA-ATC-----------A--TCCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TA
gi|8 : GGGG---CACTTATC-TTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GT-CAT--G--TTGAGTTT-AT-CTGGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----ATTTAAG--T--TCTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-GGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAA----GGGGGGGGGGGGGT-GACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----T-TT--TAAT-TCAAGGC-TTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTTATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGG---AGGGGAGGGGGG-----------TGTCCAGATATCCATCTtaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 111 11111 1111 1111111111 1111111111111111111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 22222222222 11 1111 22 11111111111111111111111111111111 11 1 1 222222 1 1 111 1 1 333333 11 111 33333 44444444444 1 1 1 111 1 1 2 111 111 333333 1 1 11 111111 1111111 222222222 111 111 11 222222 1 11 111 66666666666666666666666666666666666 111111 2222222 1111 5555555555555555555 555555555555555555555555 1111 222222 1 111 11111
lowQualScore : 222 3 66 1 22222 33 0000 3 5555555555 3 5555555555555555555 44 3 77 3 33 66 444 3 7 3 3 33333333 88 3 3 3 3333333 0 3 55 44 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 0 0 2222222 6 6 99 6 3 5 33333333333 6 6 11 0 8 3 6 44 3333 2 00 44 1 66666666666666666666666666666666 33 0 1 0 1 888888 0 3 0 3 22 6 99 222 2 3 0 0 3 0 2 777777 2 6 33 777 66 22222 77777777777 0 2 7 7 3 6 3 3 888 3 6 6 3 0 777 777 0 111111 0 0 33 666666 4444444 666666666 8 0 444 222 1 66 1 8 11 44 55 333333 8 0 44 88 0 0 6 5 99 1 3 66 111 1 6 55555555555555555555555555555555555 6 1 999999 1 0000000 6 1 0000 8 8 9999999999999999999 3 8 88 000000000000000000000000 8 0 1 5555 8 1 222222 0 777 11111
lowQualScore : ... . .. . ..... .. .... . .......... . ................... .. . .. . .. .. ... . . . . ........ .. . . . ....... . . .. .. . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . . ........... . . .. . . . . .. .... . .. .. . ................................ .. . . . . ...... . . . . .. . .. ... . . . . . . . ...... . . .. ... .. ..... ........... . . . . . . . . ... . . . . . ... ... . ...... . . .. ...... ....... ......... . . ... ... . .. . . .. .. .. ...... . . .. .. . . . . .. . . .. ... . . ................................... . . ...... . ....... . . .... . . ................... . . .. ........................ . . . .... . . ...... . ... .....
lowQualScore : 222 6 55 2 22222 44 4444 3 4444444444 3 5555555555555555555 22 1 33 1 99 88 666 5 3 6 6 22222222 66 6 6 6 8888888 4 6 00 66 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 6 6 5555555 7 7 22 7 5 2 88888888888 7 7 00 8 0 2 0 00 5555 5 55 22 0 22222222222222222222222222222222 88 0 0 0 0 888888 0 2 0 2 22 5 88 000 5 2 2 0 5 0 5 888888 5 5 88 555 88 88888 55555555555 2 5 3 3 3 7 3 3 333 3 7 7 3 0 000 555 2 888888 0 5 22 000000 6666666 000000000 0 8 000 222 4 44 0 0 00 66 88 000000 0 8 88 66 6 8 0 2 22 0 3 88 777 0 7 22222222222222222222222222222222222 7 0 222222 0 2222222 7 0 8888 0 2 2222222222222222222 8 0 88 888888888888888888888888 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
gi|1 : GGCG---CGGTTACA-AT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--AT-TATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GTTCA-G--TGGTCTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCATG----GTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAGG-GGGGGGGGGGGGGT--ACTTCACTA-------------------------T----CCTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTTAATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAAT-A---TAAGGGGGGGGGGT-CGT-C-GT---AGTA-TTACATTATAATTA-CCAATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA-GTTATTTTTAAAAAACT--TT-AAAGTTACGC-ATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAG--TACATATGGTGT----AGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAA--TCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GT-TAT--G--CTGAGATTCAA-CAGGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GTGTA-GTTTC-TCTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACC-ATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--AT-TAT--G--TTGCGTTTTAA-CAGGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACA-GATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---T-TGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GTTAA-G--TT-TGTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA-GTTAAT------AA--T--T--ACA--TGCG---------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA---T---------GA----AAAA-TGCTG-AT------------TGAT-TAAA---AA------GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAA-TTGGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGTTTA-T--TT-TTTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACC-ATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-AT-CA---A--TTGAGTTTTAG-CAAGTTGTttacatacgtattttat
gi|16 : gctacatttctgcagttgctccccttacaacggatgtacgggatGGCGG--CGCCTACCCATTGCGGTC--TCGGA---------------------TATTAA-CCAA--A--A----TG-AGAA-TAAAA-----------------------TCT--T-T--AT-T-T--GA-TTGGGTTTTAA-CAG
gi|18 : gctacatatttctaggttctcgcccttacaaacgatgtacggGTG---CGCTTAAC-ATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--AT-TAT--AATTTATGTTTTGA-CAttaattgattta
gi|19 : gatgtagagaTTCT--T-C--AT-CAT--A--CCGAGTTATAA-C------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGATG-----CCTGA-A--TATTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCG
gi|2 : GGCG---CGGTTACC-AT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--AT-T-T--G--CTGAGTTTTAA-GCGGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACTA-GAAA--GAAAA-GCACAACTA-ATCA-G-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----C-TT--TAAT-CCAATGC-TTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATATAACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAA-TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ATGAAGGGGGGGGGGTCTGT-CATT---TATATTTACATT-TAAATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-GCACCTGATCTAC-ATCTAGCAAC-AGTAGATTAATTTGT-C--AGTGT-AGT-TGA---TTA-GTTATTTTTAAAAC--T--TTAAAG--TACGCTATA---ATTG-G-TGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAATACTAC------TGGTGTTAGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---GATTTCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACC-GTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTAT-TAT--A--TTGAGTTTTAA-CTGTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GTTTA-G--TG-TCGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACTA-GAAT--AAAAA-GCTCAATGA---TA-G-CATGTGATATAAT-CA-GGCAA--GTA-GCATCG--TTCAAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTCAA--------------TTTTTATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA---------GGGAGAGGGG-----------TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAAACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTGTA-A----TTGATTT-ACGCAAAAT----------------GGATTGAAT-A-ACG--GGAGGAAAAAAATAA-CAGT---TATA-TTACACTATAAATA-CCAATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAA-GGTGTTTTTAAAAA--CGATC-AAG--TACGCTAT----ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : -TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA---A-GTTGATTT-AC--AAAACATTTATTATTC--AAACGATTGAATCACACGCAGAAA------TATCTACAGG---TATATT-GCGCTA----------------AAGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA-GTTA---------A--T-----AAA--TATGC-------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA---TAC------CGA----AGAACT-CTG-ATA-TAC-CA---------TAGA---CA--TTCTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACC-ATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--AT-CAT--A--TTGAGTTTTAA-CAGGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GTTCA-G--TG-TTATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACTA-GAAT--AAAAACACACAAT-A-AT-A-T-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC--ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA---G--ATGA-TTTTAA--AGGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G--CA-G--T--TTATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATCA-GAAT--AAAAA-AC-CAATAATATCG-A----GTGGAATAAG-CATAGCAA--G-A-G-ATCGATT
gi|7 : --TC--AAACGACTGAAT-C-ACAAAAGA-------TATGT-CAGTAAATATATT-ACAAAAGAGACA-AAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAAGCTATC------AG--T-------G--TACG-TATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA---T---------GA----AGAATCGCGG-ATA-TAC--AAA-ATC-----------A--TCCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TA
gi|8 : GGGG---CACTTATC-TTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GT-CAT--G--TTGAGTTT-AT-CTGGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----ATTTAAG--T--TCTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-GGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAA----GGGGGGGGGGGGGT-GACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----T-TT--TAAT-TCAAGGC-TTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTTATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGG---AGGGGAGGGGGG-----------TGTCCAGATATCCATCTtaca
blockSeqs : ACT C C A CTTCA AC AGTA . TTAGGTAT A CATACGATACTAATT GA A TT C . AT CA C A . A GTATAATT TA G . T AATTAT A TT AT G A . . A T G C TGA CTG GA C T AT AG AAAA TG T TGTAATTAGTATAAATAGCCGA T . GGT TA T A T T TTTTTTA G . . C A T ATCAGGCAA T T TT A C T TC AAAA G TG T TATTGCCCAATAACTCTTGCAGTTCTT AA . T . T GTACAT . T G A TG G GA CGC C T . T . C GTATAT G G TA . GG GGGGG GGGGGGGGGCA C A T . G . A AT . G C G T ATG ATT TAAAT A A AT ATTC CACACGC GGGGGGGTC A AAA TTT T AT A C . TA AA ACAATG G TC A A C GC G A AG GAA A A TTTTTAAAACTTTAAAGTACGCTATA . A GACATG T GTGTTTT . T ATT . G TACTACTGGTGTT T . A TAAAGTCAGTAAAGATTT . G CA . G GGT . . ATACT
blockSeqs : G . A G A AT A . CATAG . TTTAAGGAAACT . . A . . A CA T A . . . . . . . TG . . C . . . . A A . . TT TT A C A . AA A . . AGTGATCAGTATATATAGCCGA T . . T T C . T TTTTT . . . . T G ATCAGTAT . . . . C A TT AAGA G T A TAATGC . . G . A . . T . A CA A AA TG C T . A . C . G A . . AA AG . C . . . G . . T . . C . G A . AG . G T TC AATGA GGAAAAAAA . . TT C AG A . . CA AC . . TG C A C . G G T . T . TTTTTAAAAACGATCAAGTACGCTAT . T . G T . C ATA . A TACCGA C . A TGATTAAAAA . T A . G GTT . . T
blockSeqs : . . C C T AT . . TAG . GTTTCGATACTA . . . . . . TT T . . . . . . . . T . . G . . . . C T . . A AC A T T . AG G . . ATCTAGTAAATATGCCGA A . . G T A . . TTTTT . . . . A A ATATCAT . . . . T T . . . G A TC . . G . A . . . . . TC . G TC C . . . . . . . G . . . . . . . . . A . . . TC CACAA ATA . . TT C T A . . T AC . . AA A T T . A . A . A . TCAGTGTACGTATATTC . T . G A . A AAT . . TGA T . A CATAGACAT . C A . C AT . .
blockSeqs : . . C C C AT . . TAA . TTTACGATACC . . . . . . CA T . . . . . . . . G . . T . . . . G . . . G AG A C T . AG A . . ATGGGGTTACAGCCAT T . . T . A . . G . . . . A G TAGCAT . . . . . . . AACG TA . . TT A A . . . A C . . . . . . . T . A . G . ATAATTACATGCG . A . T A . G . . . TGA . . . AAAATCAT . G T . C
blockSeqs : . . T A A AT . . GAG . CTTTTGATACT . . . . . . CA T . . . . . . . . A . . T . . . . C . . . A TC C C A . AG . . . TTGTAT T . . T . . . . . . . . . TATCGA . . . . A . . . T . ATAAATATGC . A . T T . C
blockSeqs : . . C A A AT . . CAT . CTTTTGATACA . . . . . . CA T . . . . . . . . G . . G . . . . A . . . A TT A C T . A . . . GGGCGA . . . .
blockSeqs : . . C A A AT . . CAG . CTTTCGATACT . . . . . . GC T . . . . . . . . T . . G . . . . C . . . A TT A C A . G . . .
blockSeqs : . . C A A A . . AA . CTTACAGTGCC . . . . . . CT G . . . . . . . . G . . G . . . . A . . . T CT . A A . . .
blockSeqs : . . A . . . . CA . GTATC . . . . . . CA . . . . . . . . . G . . . . . . . A . . . A A . T C .
blockSeqs : . . . . . . . G . . . . . . . . CT . . . . . . . . . G . . . . . . . C . . . A T . . T .
blockSeqs : . . . G . . . . . . . . C . . . . C . . .
blockSeqs : . . . . . . A
blockSeqs : . . .
blockSeqCons : C* AT CTTNCGATACC******** ** CA* ** G****** G* A*** A*** ** ATCAGCAN*** TC**** AACGN** GTA****** ** AC A* A* TTAATAAAGTACGCTAT****************** ATT* TACCGA************* A* TAAAGCAT**************** A***
originalCons : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCA-G-CATGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGAAT-A-ACGAAGGAGGGGGGGTATGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTTTTAAAAA--T--TT-AAG--TACGCTATA---ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC-TAAA-GTCAG-TAAA---AA--TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
finalCons : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTTNCGATACC--------AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAACA-GGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAAG------GTTCA-G--TG-TCTTCGATT-T-T-GTGGAG-AANAC-T-TT-TA---AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGAATCAGCAN---GTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATTTC----AAAGGATTGAATAACGN--AGGAGTA------TGT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTACA-TATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA-GTTATTAATAAAGTACGCTAT------------------ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATATT-GA-TAAAAGTAATAATACCGA-------------AGAATTGCTG-ATA-TACTAAAGCAT----------------CCTGATTC-TGATTTGAANAA---GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 111 11111 1111 1111111111 1111111111111111111 11111111 1111111 11 1 111 11 1111 222222222222222222222222222222222222222222222222222222222 111 1 1111111 1111111111 11 1111 22 11111111111111111111111111111111 11 1 1 222222 1 1 111 1 1 333333 11 111 33333 44444444444 1 1 1 111 1 1 2 111 111 333333 1 1 11 111111 11 111 22222222222222222222 111 111 11 222222 1 11 111 111 7777777777777777777777777777777777777 111111 2222222 1111 5555555555555555555 7777777777777777777777777777777 1111 222222 1 111 11111
lowQualScore : 222 3 66 1 22222 33 0000 3 5555555555 3 8888888888888888888 44 3 77 3 33 66 444 3 7 3 3 33333333 88 3 3 3 2222222 3 0 3 55 11 3 3 3 3 3 1 0 3 3 9999 222 00 2 1 55 0 0 44 9999 66 5 000000000000000000000000000000000000000000000000000000000 1 5 000 77 7 7 8 0 0 2222222 6 6 99 6 3 3333333333 1 6 6 11 0 8 3 6 44 3333 2 00 44 1 66666666666666666666666666666666 33 0 1 0 1 888888 0 3 0 3 22 6 99 222 2 3 0 0 3 0 2 777777 2 6 33 777 66 22222 77777777777 0 2 7 7 3 6 3 3 888 3 6 6 3 0 777 777 0 111111 0 0 33 666666 11 111 8 1 88888888888888888888 0 444 222 1 66 1 8 11 44 55 333333 8 0 44 88 0 0 6 5 99 1 3 66 111 1 888 3333333333333333333333333333333333333 6 1 999999 1 0000000 6 1 0000 8 8 9999999999999999999 3 8 8 2222222222222222222222222222222 8 0 1 5555 8 1 222222 0 777 11111
lowQualScore : ... . .. . ..... .. .... . .......... . ................... .. . .. . .. .. ... . . . . ........ .. . . . ....... . . . .. .. . . . . . . . . . .... ... .. . . .. . . .. .... .. . ......................................................... . . ... .. . . . . . ....... . . .. . . .......... . . . .. . . . . .. .... . .. .. . ................................ .. . . . . ...... . . . . .. . .. ... . . . . . . . ...... . . .. ... .. ..... ........... . . . . . . . . ... . . . . . ... ... . ...... . . .. ...... .. ... . . .................... . ... ... . .. . . .. .. .. ...... . . .. .. . . . . .. . . .. ... . ... ..................................... . . ...... . ....... . . .... . . ................... . . . ............................... . . . .... . . ...... . ... .....
lowQualScore : 222 6 55 2 22222 44 4444 3 4444444444 3 8888888888888888888 22 1 33 1 99 88 666 5 3 6 6 22222222 66 6 6 6 5555555 6 4 6 00 00 3 3 3 3 3 0 0 3 3 4444 444 22 0 0 00 8 4 88 4444 99 0 444444444444444444444444444444444444444444444444444444444 7 7 000 11 3 2 0 6 6 5555555 7 7 22 7 5 2222222222 0 7 7 00 8 0 2 0 00 5555 5 55 22 0 22222222222222222222222222222222 88 0 0 0 0 888888 0 2 0 2 22 5 88 000 5 2 2 0 5 0 5 888888 5 5 88 555 88 88888 55555555555 2 5 3 3 3 7 3 3 333 3 7 7 3 0 000 555 2 888888 0 5 22 000000 00 888 0 0 00000000000000000000 8 000 222 4 44 0 0 00 66 88 000000 0 8 88 66 6 8 0 2 22 0 3 88 777 0 333 0000000000000000000000000000000000000 7 0 222222 0 2222222 7 0 8888 0 2 2222222222222222222 8 0 0 4444444444444444444444444444444 0 8 0 2222 0 0 888888 0 555 00000
consensus : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----T-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCAN-CANGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGA--AT-A-AC-GGA------GG---AGTAT-GT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA---GTTA---TTA------A-------TAAAG-TACGC-TAT--ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC------------TAAAGA-CA---------TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
Reference ( family-2813 ) : GGCG---CGCTTACC-ATTGCGGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAAGCTT-NCGAT--AC----C-AAATTCT--T-T--AT-TAT--G--TTGAGTTTTAA-CAGGTTGTATTAT-A-T-C--------TATGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AANAC-T-TT-T--A-AA-TCGTAC-AATTTCGNCAA--ATTGTAGAGTTGGAGAAA---GGAGGG--G-GGG----------------A------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATTAATACCAA-AACTTTATTTTT--AA-CAAAAGACACTA-GAAT--AAAAA-GCACAATGA-ATCAG-CANGTGATATAAT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAAGAGGGGGGGGGGGGGTTGACTTCACNA-------------------------T----C-TT--TAAT-CCAANGC-TTTAAAANTTC------GT-AATAGTG-AGTGAAGACGACAGAGAGTTAATCTTTGCGGTCCAATTTATCG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTAT--TGTGAGCCAGGCACTG--TT---TAGAGGGG---GGGGGGGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTCATCCG-TTGCTACGTGGCTT-ATAA-TATTTCTGTGTA--CAT---TTCAGTAACTGCAGCGCAAAAAGAGCTGTATAAA-TTTGATTT-ACGCAAAAT-TTTATT--TC--AAAGGATTGA--AT-A-AC-GNA------GG---AGTAT-GT-CAGT---TATATTTACACTATAAATA-CCAATTC--GAAATAATTAAACATGTTCTGTT------TA-TTGGCACCTGATNTAC-ATATAGCAACAAGTAGATTAATTTGTCC--ANTGT-AAA-TGA---TNA---GTTA---TTA------A-------TAAAG-TACGC-TAT--ATTG-GTTGCACNTGTGATTTCAGGCATATC------TAGTNGTGTTTN------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAA---TAC------CGA----AGAATTGCTG-ATA-TAC------------TAAAG--CA---------TCCTGATTC-TGATTTGAANA-A--GTCGA-GNACTA-G-T--AA-TATT---TAATACTATATTCG
gi|1 : GGCG---CGGTTACA-AT-GCGGTCCCTATGA----ATCAC-TAGA----TAGCATTAAGCAAAG-A--G----T-TAGA--TAAAGCTT-TCGATTTACA---T-AAAT-CT--T-C--AT-TATTTG--CTAAGTTTTAAACAGGTTGTATTAT-AAT-C--------TCTGATT-A-AACA-GCAAAG-----GT-TCA-G--TGGT-CTTCGATT-T-TTGTGGAGCGAAAC-T-TT-TT-A-AA-TCG-AC-AATT--AACAA--ATTGT-GA-TTA-ACAAA---GGGGGG--G-GGG-------------------------------G---------------CGA-------ATTCGATGTTTATTTCTGTTACAA---AT-TAAAATGCA-TTACTACCAA-ACATCTATTTTT--AA-GAAAAGACACTAAGAATTTAAAAA-GCA-AATGATATCAT---GGTAATATATT-CA-AGCAA--GTA-GCATCGTTTTTAAAAAGG-GGGGGGGGGGGGGT--ACTTCACTA-------------------------T----CCTT--TAATTCCAATGCCTTTAAAATTTC------GTGAATAGTG-AGTGAAGATGACAGA-AGTTAATCTT-GCGGTC-AATTTATCGCGTTAATTTTTTATATTTCCACTACAATTCAGCGACCAGTAT--TGTGAGCCAG--ACTG--TTGTATAGAGGGG--------GGGGGGG-----------TATCCAAAGATCCACCTCTGTTTGTAAATATAACACAACTCATGAAT-TACTGTAT-AAACGTGGACAAACTCATCCGTTTGCTACGTGG-GT-ATAA-TATTTCTGTGTA--CAT---TTCAATAACTGCAGCGCAAAGAAGGCTGTATAAATTTTGATTT-ACACAAAAT-TTTATT--TTCAAAAGGATTGAATAT-A-AG-GGG------GG---GGGGTCGT-C-GT---AGTA-TTACATTATAATTA-CCAATTCGGGAAATAATTAAA-ATGTTCTGTT------TA-TTGGCACCTGATCTACGATATAGCAACAGGTAGATTAATTTGTCA--GTTGT-AAATTGA---TTA---GTTATTTTTA------AAAAACTTTAAAGTTACGCATAG--ATTGCTTTGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------GTGTTGCCGAAAATATTTGATTAAAAGTAATAAG--TACATATGGTGT----AGAATTGCTGAATATTACTTAAATGTCAGTTAAAGATAA---------TCCTGATTCTTGATTTGAATA-AAGGCCGAGGAACTA-A-TTCAATTATTTTATAATAC-ATATT
gi|10 : cagtacttcccttaacaacggatattaggaTCACACAAAAGTATGGTATTAA-CA-------G----TGTACAG-TAA-GTTT-ACGAT--AC----C-GAATTCT--T-T--GT-TAT--G--CTGAGATTCAA-CAGGTTGCGCTAT-A-T-C--------TAGGAT--A-GA-A-ACAA-T-----GT-GTA-GTTTC-T-CTTCGATTGT-T-G-GGAG-AAAAC-A-TT-T--A-AA--AATATGAATTTCGTCAA--AATATAA----GGA-CAA---GGAAGA--A-GGG----------------T------------T-G---------------TAT-------GTT--ATATCTATTTCTGTC-AAAGGTATATAAAA--CAATTAATAacactttacatttgttatacgactatactgttgcg
gi|11 : agctGCG---CGCTTACC-ATTGCGGTCC-TAAGA----AT----------------ATTAA-TA-------G----TGTAGAA-TAAAG---------------------ATTCT--T-T--AT-TAT--G--TTGCGTTTTAA-CAGGTTGCATTAC-A-T-TGTATAATTTATCAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AAAACTT-TT-T--G-AA-TTGTAC-AA-TTCAACAA--ATAGTAGACTTCGAGAGG---GGaagcgaatttcaaaagta
gi|12 : ttcatttttgcagttacaccccttacaacggatgtagggatGGCGACTCGCTTACA-GATGCAGCCA-TGAGC----TTCAGATAAAA---TAGTCTCAT-CAAATTA--GGTATTGTAGAAATCAAG-------GT--AT----C-AAATCCTGAT-T---T-TGT--G--TTGATTTTT-------TTTTATAAT-T-T-C--------TATCAT--A-AA-ATAAAA-A-----GT-TAA-G--TT-T-GTTCGATT-T-T-GTGGAT-AACAC-T-TT-g
gi|13 : ttataatttttgtagttttttctttacgccaaaagtaTATTTTGTCCGCAGTGT-AAAGTGAGAACAA---GTTA---ATA------A-------TTACA-TGCG--------TTG-GTTGCACATGTGATTTCTAGTATAAC------TACTTGTGTTTT------G-GTCGTTGAAAAT-------------TAATCA---T---------GA----AAAA-TGCTG-ATT-GAT------------TAAAA---A-------------GATCC-CAATCTAAAGA-A--ATTGA-GGACct
gi|14 : aacaacaggaagagtacattgattggaT--G--CTGAGTTTTAA-TTGGTTGTGTTAT-A-T-C--------TATGATTAA-AA-A-GTGA-AATTATGT-TTA-T--TT-T-TTT--ATT-T-A-ATGGAA-AAGGC-T-TTCT--A-AA-ACGTGC--CTTTTGTTAAATATTGAAAGGTTGG--------GGAGGG--G-g
gi|15 : G---CGCTTACC-ATTGCGGTCC-TCGAA---------------------TATTAA-CCAAT-A--G----TGTAGAA-TAAAACAT-ACGAT--ACTAATT-AAATTCT--T-CA-AT-CA---A--TTGAGTTTTAG-CAAGTTGTttacatacgtattttat
gi|16 : gctacatttctgcagttgctccccttacaacggatgtacgggatGGCGG--CGCCTACCCATTGCGGTC--TCGGA---------------------TATTAA-CCAA--A--A----TG-AGAA-TAAAA-----------------------TCT--T-T--AT-T-T--GA-TTGGGTTTTAA-CAG
gi|18 : gctacatatttctaggttctcgcccttacaaacgatgtacggGTG---CGCTTAAC-ATTGGGGTCC-TAGAA----CTCGCATAAA----TAGTATTAA-CAAAT-A--A----TGCGCAT-TAAAGTTTAAGGAA--AC----T-AATTTCT--T-T--AT-TAT--AATTTATGTTTTGA-CAttaattgattta
gi|19 : gatgtagagaTTCT--T-C--AT-CAT--A--CCGAGTTATAA-C------TA--AT-A-T-C--------TATGAT--A-AA-A-ACGA-T-----GCCTGA-A--TA-TTCTTTTATA-T-T-TTGGAG-AGCACAT-TT-T--A-AA-AGGTAC--ATGTCGTCAA--GTTATAGGGTCG
gi|2 : GGCG---CGGTTACC-AT-GCGGTC--TAGGA----ATCACATAAA----TAGCATTAG-CAAAG-A--G-----GTAGAA-TAAAGCTT-TTGAT--AC----T-AAATTCT--T-C--AT-T-T--G--CTGAGTTTTAA-GCGGTTGTATTA--A-T-C--------TCTGAT--A-AA-A-GCAA-G-----GT-TCA-G--TG-T-CTTCGATT-T-T-GTGGAG-AAAAC-T-TT-T--A-AA-TCGTAC-AATTTCAACAA--AT-G-AGAGTTAGAAAAAAAAGGAGGG--G-GGG----------------G------------G-G---------------CGA-------ATTCGATGTTTATTTCTGTA-CAA---AT-TAAAATGCAATTACTACCAA-AACTTTATTTTT--AA-GAAAAGACACTA-GAAA--GAAAA-GCACAACTA-ATCAG-TAT-TGATATAATTCA-AGCAA--GTAAGCATCGTTT--AAAAAAAAAAGGGGG-------T-ACTTCACTA-------------------------T----C-TT--TAAT-CCAATGC-TTTAAAATTTC------GT-AA-AGTGGAGTGA-GATGACAGAGAGTTAATCTTCGCGGTCCAATTTATTG-GTTAATTTTTTATATTTCCACTACAATTCA-CGACCAGTATATTGTGAGCCAGGCACTG--TT---TAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATATCCAAAGATCCACCTCTGTTTGT-AATATAACCAAACT-ATGAATGTACT-TAT-AAAAGTGGACAAACTC--TCG-TTGCTACGTGGCTT-ATAATTATTTCTGTGT---CAT---TTCAATAACTGCAGCGCAAGAAGAGCTGTATAAA-TTTGATTTAACACAAAAT-TTTATT--TC--AAAGGATTGA--AT-A-AT-GAAGGGGGGGG---GGTCT-GT-CATT---TATATTTACATT-TAAATACCCAATTC--GAAATAATTAAAAATGTTCTGTC------TA-TT-GCACCTGATCTAC-ATCTAGCAAC-AGTAGATTAATTTGT-C--AGTGT-AGT-TGA---TTA---GTTATTTTTA------AAACTT--TAAAG-TACGC-TATA-ATTG-G-TGCACTTGTGATTTCAGGCATATC------TAGTGGTGTTTA------G-GTTGCCGAAAATA-TTGA-TAAAAGTAATAATACTAC------TGGTGTTAGAATTGCTG-ATA-TAC------------TAAAGT-CAGTAAAGATTTCCTGATTC-TGATTTGAATA-A--GCCGA-GGACTA-A-T--AA-TATT---TAATACTATATTCG
gi|20 : -CTTAGATT-T-T-ATAGAG-GACAC-T-TT-T--TTAA-TTGTGC-A-TTTCGTCAA--ATTGccta
gi|3 : aaacaaatatcttgttgACC-GTTGCGGTAT-TAGGA----ATCACATAAA----TAGTATTA--CAAAC-A--T----TGTAGAA-TAAAACTT-TTGAT--AC----A-AAATTCT--T-TTTAT-TAT--A--TTGAGTTTTAA-CTGTTTGTATTAT-A-AAC--------TATGAT--A-AA-A-GCAA-T-----GT-TTA-G--TG-T-CGTCCATA-A-T-GTTGAG-AAAAC-TGTT-T--T-GA-TTGTGC-CATT-CAACAA--ATTGTAGAGTTAGAGAA----GAAGGGTGG-GGGTGTAATTAGTATAAATA------------G-C---------------CGA-------TTTCGAAGTTTATATTCGTC-CAA---AG-TAAAATGCAATTA-TACCAA-ACCTTTGTTTTTTAAA-CAAACGGCACTA-GAAT--AAAAA-GCTCAATGA---TAG-CATGTGATATAAT-CA-GGCAA--GTA-GCATCG--TTCAAAAAAGAAGGGGGGGGGAAGTTGACTTCCCAA-------------------------TAATGC-CTAATAAT-CCAAGAC-TCTAAAAAATCGTACATGT-AATAGTG-AGTGAAGACAACA-AAAGTTAATCTTTG-GATTCAA--------------TTTTTATATTTCCACTGCAATTCA-CAA-CA-------GTGCGCCAGACACTG--TT---TTTA---------GGGAGAGGGG-----------TATCCAAAAGTCTAC--CTGTTTGTAAA-ATTAAACAACT-ATGCGTGTACT-AATAAAAAGTTAACAAACGCAT-CG-TTGCTACAT-GCTTGATAAGTATTTCTTTGTA--TAT---TTCAGTAATCGCAGTGCAAAAAGAGCTGTA-A----TTGATTT-ACGCAAAAT----------------GGATTGA--AT-A-ACGGGA------GGAAAAAAAT-AA-CAGT---TATA-TTACACTATAAATA-CCAATTC--GAAATGATT-AACACATTTTGTT------TA-TTGACACC----------TATAACAACAAGTAAATTAATTTGTCC--AATGTAAAA-TGA---TAAGGTGTTT---TTAAAAACGA-------TCAAG-TACGC-TAT--ATTG-GTTGCACTTGTGATTTCAGACATATC------TAGTGGTGTTTA------G-GTTGCAGAAAaatggcaggg
gi|4 : -TATTTTTGTGTATGCATATTTTCAGTAATTGCAGTGCAAAAACAACTGTA---A-GTTGATTT-AC--AAAACATTTATTATTC--AAACGATTGA--ATCACAC-GCA------GA---AATAT-CTACAGG---TATATT-GCGCTA----------------AAGATAATCAA-CATGTTCTGTTACAATGTAGTTGGCACCTGATGTGC-CTATAGGATCAAGTAG-----TTT---C--ATTGT-AA--------TGA---GTTA------------A-------TAAA--TATGC------ACTG-GTTGCACATGTGATATCAAGCATATCGACATGTAGATGTGTTTT------G-GCTGTGGAAAATA-TAGA-TAAAA--AATAA---TAC------CGA----AGAACT-CTG-ATA-TAC------------CATAGA-CA---------TTCTGATTC-TGG-TTGAACACA--GTCGA-GCACCAGG-T--AA-TATT---TA----TATATTTG
gi|5 : GACA---CGTTTACC-ATTGCAGTCC-TAGGA----ATCACATAAA----TAGTATTAA-CAAAC-A--G----TGTAGAA-TAAATCTT-TCGAT--AC----T-AAATTCT--T-T--AT-CAT--A--TTGAGTTTTAA-CAGGTTGTATTATAA-T-T--------TATGAT--A-GA-A-GCAA-G-----GT-TCA-G--TG-T-TATCGATT-T-C-ATGGAG-AAAACTT-TT-T--A-AA-CTGTAC-AATTT-AACCA--TTTGTAGAGTTGGAGAA-----GAGGG--G-GGG----------------A------------GTGATCAGTATATATAGCCGA-------ATTCGATGTTTATTTCTGTC-CAA---AT-TAAAATGCAATCAATACCAA-AAC-TTA-------AA-CAAAAGACACTA-GAAT--AAAAACACACAAT-A-AT-AT-CATGTGATATAAT-CA-ttacatcatgaccatacat
gi|6 : atttttgcagatattccacttacaatggatgtagggTTAC--ATTGCAGTCC--AGGA----ATCACATAAA----TAGTATGAA-CAAAC-A-------TGTAGAA-TAAACGTT-TCGAT--AC----TAAAATTCT--TAT--ATCTA---G--ATGA-TTTTAA--AGGTCGTA-TATAA-T-T--------TA-AAT--AGAA-A-GGCA-G-----G---CA-G--T--T-TATCGATT-CAT-GGGAAG-AACAC-T-TT-A--A-AACTGGTA--AATGTAACCA-----TGT-GAG-TGGAGAA-----GAGGT--G-GAG----------------ATCTAGTAAATATG-C---------------CGA-------ATTCGA---TTA--GCTGTC-CAA---A--TAAAA-GCAACAAATACCAATAAC---A----G--AA-CAAAAGACATCA-GAAT--AAAAA-AC-CAAT-A-AT-AT-CGAGTGGAATAAG-CATAGCAA--G-A-G-ATCGATT
gi|7 : --TC--AAACGACTGA--AT-C-AC-AAA------AG---A-TAT-GT-CAGTAAATATATT-ACAAAAGAGACA-AAAATTC--AACACAAT-AAACATGCTCTGTT------TA-TGGGAACCTAAAATAC-ATCAAGCAACAAGTAGTTCAATTTGTTC--AATATGAAA-TGA---TTAA--GCTA---TCA------G-------T---G-TACGTATATTCATTG-GTTACACATAT-ATTTTAGATATATT------TAGTTGTGTTTGTGTTTTG-GTTGTCGAACAAA-ATGA-TAAAAATAATAA---T---------GA----AGAATCGCGG-ATA-TAC------------AAAAT--CA---------TCCTGATTC-TGATTTGAAGC-T--GTCGA-ACACTA-GTT--GA-TATT---TA
gi|8 : GGGG---CACTTATC-TTTGTGATCC-T--TACTTCATTATA-AAA----CAGCATTAA-CAAAC-ATAG----TATAGAA---AAGCTT-ACAGT--GC----C-AAACTCT--T-T--GT-CAT--G--TTGAGTTT-AT-CTGGTTGTAGAAT-A-T-C--------TATGAT--G-AA-A-ACAA-G-----AT-TTAAG--T--T-CTTTGATT-T-T-GTGGAG-AACAC-T-TT-TTGA-AA-T-GTAC--ATTTTGTTAA--ATTGTAGGGTTGG-GAAA---GGAGGA--GTGGG----------------ATGG---------G-G---------------TTACAGCCATATTTAATGTTTATTTCTGTC-CAA---AT-TAcaaatt
gi|9 : acatttctgtagttattccccttacatcagaagttgggggggggggggTTTTT--AAGCAAAGGACACTA-GAAT--AAAAA-GCACAATGA-ATCAGGCAAGTGTCAGAGT-TT-TGTTGTTGTT-GTTTTTTTTTTAAAA----GGGGGGGGGGGGGT-GACTTCACAATATTGCCCAATAACTCTTGCAGTTCT----T-TT--TAAT-TCAAGGC-TTTAAAAATTT------GT-AATAGTG-AGTGAAGATCGCAAAG-GTTAATCTTT-CGGTCCAATTTATCG-GTTAAAATTTTATATTTCCACTACAATTTA-CGACAA------TGTGA--CAAGCACTGTATT---TAGAAAGG---AGGGGAGGGGGG-----------TGTCCAGATATCCATCTtaca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTTTTTTTTCCTGTTGTTTTTTTTGGGGGGGGGGGGGGGGGGGCTTGAGAATTGCCCATAAATTTTTGAATGTAGTACACTGTTAATTCATAAATATTTAATGTTATTAAAGGTTGAAAA
Unaligned ( gi|21 ): GCTATGAGTGTATCTCTTGCCAATGGCCTACATTTTTGCAGTTACTTCCCTTAAAACCAGACATGGAAGGGGGGG
Unaligned ( gi|22 ): CCTACAGTTTCGCAGTTACTCCCCTTTCACCTGAAGTAGGGGCGATTTTACCATTACTGTCTTAA