lowQualScore : 111 333 11 11 111111 111 11111 111 222222 22222 3333333333333333333333333333333333333333333333 1 1 111 111 111111111 11111 44444 2222 11 222222222 1 1 3333333333333333333333333333 11111 111 1 111111 1 1 11111 1111 1111 55555555555 3333333 1 3 1 1 2 11 2 333 1 44 2 1 2 3
lowQualScore : 777 666 33 55 333333 5 000 66666 000 3 0 888888 4 8 8 88888 55 0 3333333333333333333333333333333333333333333333 4 2 0 7 8 777 222 4 222 2 4 66 888888888 77777 5 11111 66 5 1111 66 3 77 222222222 888 1 5 9999999999999999999999999999 99999 888 0 5 777777 4 5 0 0 22222 7 55 5555 5 2222 77 5 5 5 55555555555 888 1 5 1111111 5 88 888 5 5 0 66 1 77 5 3 0 5 0 66 4 0 5 2 55 5 5 5 5 2 5 5 0 222 5 5 5 1 22 2 1 5 2 5 6 1 6 6 6
lowQualScore : ... ... .. .. ...... . ... ..... ... . . ...... . . . ..... .. . .............................................. . . . . . ... ... . ... . . .. ......... ..... . ..... .. . .... .. . .. ......... ... . . ............................ ..... ... . . ...... . . . . ..... . .. .... . .... .. . . . ........... ... . . ....... . .. ... . . . .. . .. . . . . . .. . . . . .. . . . . . . . . ... . . . . .. . . . . . . . . . .
lowQualScore : 777 000 00 66 111111 7 111 00000 000 2 2 888888 4 4 9 99999 55 8 1111111111111111111111111111111111111111111111 0 0 7 4 2 888 222 4 222 7 4 99 111111111 55555 0 88888 99 0 8888 99 2 22 555555555 888 9 0 4444444444444444444444444444 44444 888 0 0 222222 4 0 0 0 55555 6 44 6666 7 1111 99 7 7 7 00000000000 666 7 7 3333333 0 66 888 0 0 0 99 4 99 7 0 0 0 0 44 4 7 0 0 22 0 0 0 0 2 0 7 1 999 7 7 0 4 11 9 4 7 9 7 7 7 7 7 7
consensus : ATATCTTTA-T-GCTTT--AAAAGACG-TACATCTTANT----A-CATCTATAT--A--ACA---ATATGCATAC--A--TACATA-ACAAAAAT-GG----CATTGTAT--GGTGGTGTACAAATT---ACAAT----ATA--AAAGG-AG--AAC---A---------AC-T-TT-AAACAAGATGGTTATCCCGCAATCTT---AAATGCAAG---A-CG---TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA-TT--ATTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-AAAAAC-----AGA-T---GGTTTTTGCCAGATAGTA--C-TTT---------T-T---G---ATATAT-----TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----A------TTT-C-TTTAAGTAT-AT-----T-GTTAT-GG-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAAT-ACTGCAA-GGAAAAATGGTCAA-TAACATG-TT-TGTAAAT-AAT-ACACTTAGAAGAACAA-TTAATTTGCTC--AACTAAACTTT-G-AATAAAAATA-TCCGTCAACCT-TTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
Reference ( gi|5 ) : ATATCTTTA-T-GCTTTT-AAAAGACC-TACATTCTAGT----A-CATTTATAT--A--ACA---ATATGCATA---A--TACATA-ACAAAAAT-G-----CATTGTAT--GGTGGTGTACAAATT---ATAAT----ATA--AAAGGAAG--AAC---A---------AC-T-TT-AAACAAGATGATTATCCCGCAATCTT---AAATGCAAG---A-TG---TACATATTTCC-CTAA--ACTA-C----A-AAGT-----TCA-TGTAATT--ATTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-AAAAAC-----A-A-T---GGGTTTTGCCA-ATAGTA--C-TTT---------T-T---G---A-ATAT-----TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----A------TTT-C-TTTAAGTAT-AT-----TTGTTAT-GA-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GAAG--ATAGCCTAATTCGG--C-TAATATGCCTTTTGATACATATT-AGGT-AT-AGGTTTACAAAG-GTAATGACTGCAA-GGAAAAATGGCCAA-AAACATG-TT-TGTAAAT-AAT-ACACTTAGAA-AACAA-TTAATTTGCT---AACTAAACTTT-G-AATAAAAATA-TCCGTCAACC--TTG-TTTAT-AA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCACCAC-C-AAAT-ATATCC
gi|2 : ATATCTTTAAT-GCTTTTTAAAAGACCCTACAT-CTATT----A-CATTTA-AT--A--ACA---ATATGCATAC--A--TACATA-ACAAAA-T-G-----CATGGTAT--GGTGGTGTACAA-TT---ATAAT----ATA--AAAGGAAAGAAAC---A---------CT-T-TT-AAACAAGATGATTATCC-GCA-TCTT---AA--GCAAG---ACTG---TACATATTTCCGCTTA--ACTAAC----ATAAGT-----TCA-TGTAATTTAATTAT--GAAC-ACTT---GATAATTGTAA-CAAATTTA-AAAAAC-----A-A-T---GTGTTTTGCCAGATAGTAA-C-TTT---------T-TTGAG---A-ATAT-----TTACG---ACGTA-AG------TTCCT-CGTAATG-A-GG-GCAA-----TGAATAGTAAAG----TGA-ACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----AT-----TTT-C-TTTAAGTAT-AT-----ATTTTAT-GATCGGCCTGTTT---CAATTT-CAAG-ATTGTGAGGAAG--ATAGCCT-ATTCGG--C-TAATATGCCTTTTGATACATATTGAGGT-ATAAGGTTTACAAAG---AATTACTGCAT-GGAAAAATGGC--A-AAACATG--T-TGT-AAT-AAT-ACACTTAGAAGAACAA-TTAATTTGCT---AACTAAACTTT-GAAATAAAAATACTCCGTCAACCATTTG-TTTATAAA-TAGGAAAGAAAAT-TTAGAAAGTAGCATTCTCTTGATTCACCACGC-AAATGATAT
gi|12 : tatATATCTTTA-TTGCTT-----AAGACG-TACATCTTAATTATTA-CATTTATAT--A--ACA---ATATGCATAC--A--AACATA-ACAAAAAT-GG----CATTGTAT--GGTGGTGTACAAATT---ATAAT----ATA--AAAGG-AG--AAC---A---------ACTT-TT-AAACAAGATGATTATCatc
gi|8 : atTA-T-ACTTT--AAAAGACG-TACATCTCAAT----A-TATT---AT--G--GCA---ATATGTATACATG--TACATA-ACAAAAAT-GG----CATTGTAT--GGTGGTGTACAAATT---C--AG----ATA--AAGG--AG--AAC---A---------AC-T--------------GTTATCCCGCA-TCTTTAAAAATGCAAG---A-TG---TATATATTTCC-CCAA--ACTG-C----A-AAGT-----TCG-TGTA--T--ATTAT--GAAC-ACTT---AATAACTGTA--CAAACTT--AAAAAC-----AGA-T---GGTTTTTGCCA-ATAGTA--T-TNC---------TAT---G---A-ACAC-----Tatgtagaacataattatagtaggcagattt
gi|9 : acaAAGACC-TGCATCTTATC----A-CACCAGTGT--T--AC-----T-T---TA---A--TACATT-AGAAAGAT-GGCAGACAATGCAT--GGTGCTGTACAAAT------AAC----AT----------G--TCT---ACCTCCTTTTAC-T-TT-TAA--AGAAGGTTTTCTTGCAA-CTT---AAATGCAAG---G-CA---TGAATAATTCT-CAAA--GTTA-C----A-AAGG-----ACT-TGGA--C--ATTTT--GAAC-ACTTTAAAATAGTTGTA--CAAATTTG-AAAAGA-----G-A-T---GTCTTTTGCAT-GTGGTA--C-TTT---------T-T---AT--ATATAT-----TTATG---ACG-A-AG------TTTCT-TG-AATaataactgtacaaacttaaaaacagatgtttttgccaatagtatttt
gi|3 : gtaatctcattattgcgtGACG-TACATCTTATT----AACATTTATAT--A--ACA---ATATGCATAC--A--TACATA-ACAAAATG-G-----CATGGTAT--GGTGGTGTCAAAATT---ATAAT----ATA--AAAGGAGA--AACCTTA---------CT-T-TT-AAACAAGATGATTATCC-GCA-TCTT---AAATG-AAG---A-TG---TACATATTTCC-CTAA---CTAAC----ATAAGT-----TCA-TGTA-TA--ATTAT--GAACTACTT---GATAATTGTAAACAAATTTA-AAAAAC-----AGA-T---GG-TTTTGCCAGATAGTAACT-TTT---------T-T---G---A-ATATAT---TTACGT--ACGTA-AG------TTCCTGCGTAATG-A-GG-GCAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTAGCACAC----AT-----TTT-C-TTTAAGTATAAT-----TGGTTATGGA-CGGCCTGTTT---C-ATTT-CAAGAATTGTGAGGAAG--ATAGCCTAATTCGGTCC-TAATATGCCTTTTG-TACATATTGAGGTAATAAGGTTTACAAAG-GTAATTACTGCAATGGAAAAAT-GTCAA-TAACATG-TTGTG-AAATAAATGACACTTAGAAGAACAATTTAATTTGCTC--AACTAAACTTTGG-AAT-AAAATACTCCGTCAACCT-TTG-TTTATAAA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCA-CAC-CAAAAT-ATATCC
gi|6 : GT----A-CATCTCTATCAATTACA---ATATGCATAC--A--TAAATACATAAAAAT-GG----CACTGGATTTGGTGGT-TACGA-TT---AAAGTCAGAATA--ACAG--AG--AAC---A---------CT-T-TT-AAATAAG-TGGTTATCCTGACAGCTT---AAATGCAAGC--A-GGC--TTTATATTTCC-TTAATAACTG-C----A-AA-T-----TCA-TGTTAT---ATTAC--GAAC-ACTTTTTGGTAA----A---AAATTTT-AAAAAC-----A-ACT---GGTTTTTGCCA-ATA-TA--TATTT---------T-T---A---ATATAT-----TTATG---ACG-A-AGC-----TTCCT-CGTAATGCG-GG-CAAA-----TTAATA-CAAAGC---TGATACTCGTC-CTCT----ATGTC--ATTGTTTACAT-AATTTA-C-CAC-------------T-A-TTTAAGTAT-AT-----T-GTTAT-GG-CGGCCTGTTT---CATTTT-CAAG-ATTGTGA-GAAGATATAGTCTAATTCGG--CTTAATATGCCTTTTG-TACATAAT-AGG--AT-AGGTTTACAAAGCGTAATAA-TGCAA-GGAAAAATGTCGAATAAACATGATT-TGTAAAT-AAT-ACACTTAGAAGAAGAA-T--ATTTGCCTCAGACTAAAC-TT-G-AATAAAAATA-TCTGTCAACCT-TTG-TTTTT-AATTAGGAAAGAAAATATCAG-AAGTAGCAtaac
gi|13 : T----A-CATCT-TAT--C--ACATCCAT-TACATA---AACTATATT-GGAATGATCG-----CATTATAT--TGCGGTGTACAGATTTAAACAGT----ATTTTAACGGT-G--AAT---A------------TATT-AAGCAAGAATATTTTCTCACAAT-TT---AGATGCAAA---A-CA---TAAATATTTCC-
gi|1 : ataatctcgttattgcattaggcatactTATACATA---AA-TACATA-A---AAAT-GG----CACTGTCT--GGTGGTGTACAAATT----CAA-----ATA--ACAG--AG--AAC---A---------AC-T-TTTAAATAAGATGGTTATCCCGCA-TCTT---AAATGCAAG---A-TG---TTTATATTTCC-CTAA--AT--------G-AAATA----TCA-TGTA-TT--ATTATTGAAAC-ACTT---AATAGTTGTGG-CAA--TTATAAAAAC-----AGA-T---GGTTTTTGCCA-ATAGT------TT---------T-T---ATATA-ATATATATATTATGG--ACG-A-AG------TTCCT-CGTAATA-A-GG-CAAT-----TAAATA-TAAAGGTAGTG-TACTCGTCACTCTGCAAATGTCCAGTT-TTAACATCAATTTA--ACAC----ACTCTATTTT-C-TTTAATTAT-AT-----T-GTTAT-GT-CGGCCTGTTT---CAATTT-CAAG-ATTATGA-GAAG--ATAGTCTAATTCAG--C-TAATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAA-----------------GGAAAAATGGTCAA-CAACATG-TT-TGTAAAT-AAT-ACACTT--AA-AACAA-TCAATTTGCTC--AACTAAACTTT-G-AATAAAAATA-TCTGTCAACCT-TTGTTTTAT-GA-TAGGAAAGGAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATAT
gi|18 : gA---A--TACACA-A--AAGATCG-----CATTGTAT--TGTGGAGTATGAATT---CCAAC----A-----ACGGGA---AAT---G---------AC-T-TTTAAACAAGATGGCTATCTAGC-ATTTT---ATGTGCGAGTGCA-TGACTTACTTATTattaaccctatctcatacaatttttcttttatgcaataggcccaattcttgctgcaattcttcaatctgtcacagctgtaatataattcgtcataacaatacaattttcac
gi|4 : atacatcttcATTGTAT--GGTGGTGTACAAATT---A--AG----ATA--AAGG--AG--AAC---A---------AC-T-TTTAAGCAACATGGTTATCCCGCA-TCTT---AAATGCAAG---A-TG---TATATATTTCC-CTTA--ACTG-C----A-AAGT-----TCA-TGTA--T--ATTAT--GAAC-ACTT---AATAATTGTA--CAAATTTA-AAAA-C-----A---T---GGTTTTTGCCA-ATAGTATTC-TTT---------T-T---A---ATATAT-----TTACG---ACG-ACAACATTTTTTTCN-CGTAATG-A-GGGCAAA-----TTAATA-CAAAG----TGATAGTCGTC-CACT----ATGCC--ATT-TTTACAC-ACGTTA-CACTCTTTTA------TTTTC-TTTAAGCAC-AT-----T-GTTAT-GG-CGGTCTGTTTTTTCATTTTTCAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C--AATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAAT-ACTGCAA-GGAAAAGTGGTCAA-TAA-ATG-TT-TGTAAAT-AAT-ACACTTGAAG-AACAA-TTAATTTGCT---CACTAAACTTT-T-AAT--AAATA-TCTGTCAACCT-TTGTTTTAT-AA-TAGGACAGAAAATATTAG-AAGCAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
gi|14 : TTCC-CTAA--ACTG-CCCTAA-GAGTACACATCAGTGTA--C--ATCAT--GCAC-ACTT----ATACTTGTA--CAA--TTA-ATGAACCATATA-A-TAGAGAGTTCT-CCAGATAGCA--T-TTTAACAAAATAC-T---G---A---AT-----TTACGAGAACA-A-AG------TT-TT-CGTACTG-AGGG-CAAGAAATTTTAATA-CAAGG----TGAtaaccctatctcatacaatttttcttttatgcaataggcccaatttttgctgcaattcttcaatctgtcacagctg
gi|11 : TACA---ACG-A-AG------TTCCT-CGTAATG-A-GGGCAAA-----TTAAGA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACGT-AATTTA-CACAC-----------TCT-A-TTTG-GTAT----------GTTAT-GG-CGGCCTGTTG---CAATTT-CAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C-TTATATGCCTTTTG-TACATATT-AGGT-AT-AG
gi|15 : ------TTCCC-CGCAATG-ATGG-CAAA-----TCAATA-CAATG----TGATACTCGAC-CTC------TGTC--A-T-TTTGCAG-AATTTA-CATATTCG-A------TTT-CATGTATGTAC-ATGTATATTGTCAT-GG-CGGTCTGTTT---CAATTT-CAAG-ATTCTGA-AAAG--ATA
gi|7 : TTAT-GG-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GA------AGTCTAATTCGG--C-TAATATACCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAAT-ACTGCAA-GGAAAAATGGTCAT-TAACATG-TT-TGTA----AGT-ACACTTAGAAGAACAA-TTAATTTGCTC--AACTAAACTTT-G-AATAAAAATA-TCCGTCAACCT-TTGTTTTAT-AA-TAGGAAA---------AG-AAGTAGCATTCTCTTG-TTCA-TAC-C-AAAT-ATATCCaa
gi|19 : cacaATATT----T-AT-AGGTTTACAAAG-GTAAT-ACTGCAA-GGAAAAATGGTCAA-TAACATG-TT-TGTAAAT-AAT-ACACTTAGAA-GAtaaccctatctcatacaatttttcttttaagcaataggcccaatttttgctgcaattcttcaacctgtcacaactgtaatataatctgtca
gi|10 : t-GGGAAAATGGTCAA-TAACATG-TT-TGTAAAT-AAT-ACATTTTGAAGAACAA-TTAATTTGCTC--AACTAAACTTT-G-AACAAAAATA-TCTGTCAACCT-TTGTTTTAT-AA-TAAGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCata
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTTACGAAATATATTCAGACTCAGTGTCATACATTGTTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCAC
Unaligned ( gi|17 ): TTTACGAAATATATTCAGACTCATGTCATACATTGTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCACT
Alignments
lowQualScore : 11 1 111 11 1111 11111 1111111111111 222222222222 1 111111 111111 11111 2222 1111 11 111111 22 222 2222222222222222222222 111 111111 11111 1111 1111 1 444444 1111111 1 1 1 1 1 1
lowQualScore : 33 8 6 999 6 00 0 1 0000 5 4 22222 3 4 55 4 6 0 7777 55 0000000000000 55 2 1 3 7777 111111111111 7 5 5 777 111111 4 44 4 1 4 66 333333 8 11111 4 3333 4 66 4 8888 55 1 55 66 222222 8 1 11 000 7777777777777777777777 888 666 8 4 555555 4 4 8 8 11111 1 4 3333 5 0000 66 5 0 5 0 111111 8888888 777 777 5 5 8 777 4 4 8 66 66 5 0 8 4 8 5 0 5 4 1 4 55 66 4 4 4 1 5 5 2 5 5 5 0 5 9 0 5 2 5 5 1 5 5 5
lowQualScore : .. . . ... . .. . . .... . . ..... . . .. . . . .... .. ............. .. . . . .... ............ . . . ... ...... . .. . . . .. ...... . ..... . .... . .. . .... .. . .. .. ...... . . .. ... ...................... ... ... . . ...... . . . . ..... . . .... . .... .. . . . . ...... ....... ... ... . . . ... . . . .. .. . . . . . . . . . . . .. .. . . . . . . . . . . . . . . . . . . . . . .
lowQualScore : 88 0 0 888 7 00 1 0 6666 0 2 99999 9 0 55 0 6 8 7777 00 3333333333333 00 0 4 6 7777 999999999999 3 7 5 000 555555 0 55 0 4 0 11 999999 9 11111 4 4444 4 11 4 2222 00 9 44 11 888888 4 9 22 333 8888888888888888888888 888 777 9 4 555555 0 4 9 9 11111 0 4 9999 0 6666 99 0 4 0 0 444444 8888888 111 111 0 0 9 888 4 4 9 11 99 0 0 9 4 9 0 0 0 4 1 4 44 33 4 4 4 1 0 0 5 0 0 0 0 0 4 0 0 4 0 7 4 7 7 7
consensus : ATATCT--TTA-TTGCTTTT-AAA-AGACN-TACATCTTATT----A-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----ATA--AAAGGA-GAA----CA-------AC---TTT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACT---A-TTT-C-----TTTA-A-GTAT-A-T-T-GTTATGG-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TTTGT-AAAT-AAT-ACACTTAGAAGAACAA-TTAATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
Reference ( family-2779 ) : ATATCT--TTA-T-GCTTT--AAA-AGACG-TACATCTTANT----A-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----ATA--AAAGGA-GAA----CA-------AC---TTT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----A-TTT-C-----TTTA-A-GTAT-A-T-T-GTTATGG-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TTTGT-AAAT-AAT-ACACTTAGAAGAACAA-TTAATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
gi|1 : TATACATAAA-T--ACATA-A---AAATGGCAC----TGTCT--GGTGGTGTACAAATT----CA-A-----ATA--ACAG-A-GAA----CA-------AC---TTTTAAATAAGATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TTTATATTTCC-CTAA--A-TG------A-AATA-----TCA-TGTA--TTA-TTATTGAAAC-ACTT---AATAGTTGTGG-CAA--TTATA--AA------AACAGATGGTTTTTGCCA--ATAGT----TTT---------TATAT---A-A-TATATATATTATGG--ACG-A-AG------TTCCT-CGTAATA-A-GG-CAAT-----TAAATA-TAAAGGTAGTG-TACTCGTCACTCTGCAAATGTCCAGTT-TTAACATCAATTTAACACACTCT-A-TTTTC-----TTTA-A-TTAT-A-T-T-GTTATGT-CGGCCTGTTT---CAATTT-CAAG-ATTATGA-GAAG--ATAGTCTAATTCAG--C-TAATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAA------------------GGAAAAATGGTC-AAC-AACATG-TTTGT-AAAT-AAT-ACACTTAAAA---CAA-TCAATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTTAT-GA-TAGGAAAGGAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATAT
gi|10 : g-GGGAAAATGGTC-AAT-AACATG-TTTGT-AAAT-AAT-ACATTTTGAAGAACAA-TTAATTTG-CTCA-ACTAAACTTT-G-AACAAAAATA-TCTGTCAACC-TTTGTTTTAT-AA-TAAGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCattaaccctatctcatacaatttttcttttatgcaataggcccaattcttgctgcaattcttcaatctgtcacagctgtaatataattcgtcataacaatacaattttcac
gi|11 : TACA---ACG-A-AG------TTCCT-CGTAATG-A-GGGCAAA-----TTAAGA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACGT-AATTTA-CACAC------TCT-A-----TTTG---GTAT-------GTTATGG-CGGCCTGTTG---CAATTT-CAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C-TTATATGCCTTTTG-TACATATT-AGGT-AT-AGtaaccctatctcatacaatttttcttttatgcaataggcctaatttgtgctgcaattcttcaatctgtcacagctgtaatataattcatcataacaatttttaacaatacaattttcact
gi|12 : ATATCT--TTA-TTGCTT-----A-AGACG-TACATCTTAATTATTA-CATTTATAT--A--ACAATATGCATACA-A--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----ATA--AAAGGA-GAA----CA-------ACT--TTT-AAACAAGATGATTATC
gi|13 : atATCTCGTTA-TTGCATT--AGGCATACT-TACATCTTATC----A-CATCCAT-------------TACATAAACT--ATATT-GGAATGATCGCAT----TATAT--TGCGGTGTACAGATTTAAACA-GT----ATTTTAACGGT-GAA----TAT------A-----TT-AAGCAAGAATATTTTCTCACAAT-TT---A------GATGCAAA-AC-A-TAAATATTTCC-atgtagaacataattatagtaggcagattt
gi|14 : ataTTCC-CTAA--ACTG-CCCTAA-GAGTACACATCAGTGTA---CA-TCAT--GCAC-ACTT----ATACTTGTA--CAA--TTA-ATGAACCATATAATAGAGAGTTCT--CCAG-ATAGCA--TTTTAACAAAATAC---T---G-A----AT---TTACGAGAACA-A-AG------TT-TT-CGTACTG-AGGG-CAAGAAATTTTAATA-CAAGG----TGA
gi|15 : ------TTCCC-CGCAATG-ATGG-CAAA-----TCAATA-CAATG----TGATACTCGAC-CTCT------GTC--ATT-TT-GCAG-AATTTA-CATATTCG-A-TTT-CATGTATGTACATGTAT-A-T-T-GTCATGG-CGGTCTGTTT---CAATTT-CAAG-ATTCTGA-AAAG--ATA
gi|18 : A-T--ACACA-A--AAGATCGCAT----TGTAT--TGTGGAGTATGAATT---CCA-AC---------AACGGG-AAA----TG-------ACT--TTT-AAACAAGATGGCTATCTAGC-ATTTT---ATGTGCGAGTGCATG-AC-T-TACTTATTaa
gi|19 : atacatcttcaATATT----T-AT-AGGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TTTGT-AAAT-AAT-ACACTTAGAAGAATA
gi|2 : tATATCT--TTAAT-GCTTTTTAAA-AGACCCTACATCT-ATT----A-CATTTA-AT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TG-CAT----GGTAT--GGTGGTGTACAA-TT---ATA-AT----ATA--AAAGGA-AAG----AA-------ACACTTTT-AAACAAGATGATTATCC-GCA-TCTT---A------A--GCAAG-ACTG-TACATATTTCCGCTTA--ACTAAC----ATAAGT-----TCA-TGTAATTTAATTAT--GAAC-ACTT---GATAATTGTAA-CAAATTTA-A--AA------AACA-ATGTGTTTTGCCAG-ATAGTAA-CTTT---------T---TTGAG-A--ATAT---TTACG---ACGTA-AG------TTCCT-CGTAATG-A-GG-GCAA-----TGAATAGTAAAG----TGA-ACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----ATTTT-C-----TTTA-A-GTAT-A-TAT-TTTATGATCGGCCTGTTT---CAATTT-CAAG-ATTGTGAGGAAG--ATAGCCT-ATTCGG--C-TAATATGCCTTTTGATACATATTGAGGT-ATAAGGTTTACAAAG---AATT-ACTGCAT-GGAAAAATGG-C-AA--AACATG--TTGT--AAT-AAT-ACACTTAGAAGAACAA-TTAATTTG-CT-A-ACTAAACTTT-GAAATAAAAATACTCCGTCAACCATTTG-TTTATAAA-TAGGAAAGAAAAT-TTAGAAAGTAGCATTCTCTTGATTCACCACGC-AAATGATAT
gi|3 : tatGACG-TACATCTTATT----AACATTTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TGGCAT----GGTAT--GGTGGTGTCAAAATT---ATA-AT----ATA--AAAGGA-GAAACCTTA-------CT---TTT-AAACAAGATGATTATCC-GCA-TCTT---A------AATG-AAG-AT-G-TACATATTTCC-CTAA---CTAAC----ATAAGT-----TCA-TGTA--TAA-TTAT--GAACTACTT---GATAATTGTAAACAAATTTA-A--AA------AACAGATGGTTTT-GCCAG-ATAGTAACTTTT---------T---T---G-AATATAT---TTACGT--ACGTA-AG------TTCCTGCGTAATG-A-GG-GCAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTAGCACAC----ATTTT-C-----TTTA-A-GTATAA-T-TGGTTATGGACGGCCTGTTT---C-ATTT-CAAGAATTGTGAGGAAG--ATAGCCTAATTCGGTCC-TAATATGCCTTTTG-TACATATTGAGGTAATAAGGTTTACAAAG-GTAATT-ACTGCAATGGAAAAAT-GTC-AAT-AACATG--TTGTGAAATAAATGACACTTAGAAGAACAATTTAATTTG-CTCA-ACTAAACTTTGG-AAT-AAAATACTCCGTCAACC-TTTG-TTTATAAA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCA-CAC-CAAAAT-ATATCCatc
gi|4 : AT----TGTAT--GGTGGTGTACAAATT---AAG-AT----A-----AAGGA-GAA----CA-------AC---TTTTAAGCAACATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TATATATTTCC-CTTA--ACTG-C----A-AAGT-----TCA-TGTA--T-A-TTAT--GAAC-ACTT---AATAATTGTA--CAAATTTA-A--AA------A-CA--TGGTTTTTGCCA--ATAGTATTCTTT---------T---T---A-A-TATAT---TTACG---ACG-ACAACATTTTTTTCN-CGTAATG-A-GGGCAAA-----TTAATA-CAAAG----TGATAGTCGTC-CACT----ATGCC--ATT-TTTACAC-ACGTTA-CACTCTTTTA-TTTTC-----TTTA-A-GCAC-A-T-T-GTTATGG-CGGTCTGTTTTTTCATTTTTCAAG-ATTGTGA-GAAG--ATAGTCTAATTCGG--C--AATATGCCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAGTGGTC-AAT-AA-ATG-TTTGT-AAAT-AAT-ACACTT-GAAGAACAA-TTAATTTG-CTCA--CTAAACTTT-T-AATAAA--TA-TCTGTCAACC-TTTGTTTTAT-AA-TAGGACAGAAAATATTAG-AAGCAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCtaac
gi|5 : ATATCT--TTA-T-GCTTTT-AAA-AGACC-TACATTCTAGT----A-CATTTATAT--A--ACAATATGCATA-A-T--ACATA-ACAAAAATG-CAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----ATA--AAAGGAAGAA----CA-------AC---TTT-AAACAAGATGATTATCCCGCAATCTT---A------AATGCAAG-AT-G-TACATATTTCC-CTAA--ACTA-C----A-AAGT-----TCA-TGTAA-TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACA-ATGGGTTTTGCCA--ATAGTA--CTTT---------T---T---G-A--ATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----A-TTT-C-----TTTA-A-GTAT-ATT-T-GTTATGA-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GAAG--ATAGCCTAATTCGG--C-TAATATGCCTTTTGATACATATT-AGGT-AT-AGGTTTACAAAG-GTAA-TGACTGCAA-GGAAAAATGGCC-AAA-AACATG-TTTGT-AAAT-AAT-ACACTTAGAA-AACAA-TTAATTTG-CT-A-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC--TTG-TTTAT-AA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCACCAC-C-AAAT-ATATCCtaaccctatctcatacaatttttcttttatgcaataggcccaatttttgctgcaattcttcaatctgtcacagctg
gi|6 : T----A-CATCTCTATCAATTACAATATGCATACA-T--AAATACATAAAAATGGCAC----TGGATTTGGTGGT-TACGA-TT---AAA-GTCAGAATA--ACAG-A-GAA----CA-------CT---TTT-AAATAAG-TGGTTATCCTGACAGCTT---A------AATGCAAGCAG-GCTTTATATTTCC-TTAATAACTG-C----A-AA-T-----TCA-TGTT--ATA-TTAC--GAAC-ACTTTTTGGTAA----A---AAATTTT-A--AA------AACAACTGGTTTTTGCCAATATA-TA---TTT---------T---T---A-A-TATAT---TTATG---ACG-A-AGC-----TTCCT-CGTAATGCG-GG-CAAA-----TTAATA-CAAAGC---TGATACTCGTC-CTCT----ATGTC--ATTGTTTACAT-AATTTA-C-CAC--------T-A-----TTTA-A-GTAT-A-T-T-GTTATGG-CGGCCTGTTT---CATTTT-CAAG-ATTGTGA-GAAGATATAGTCTAATTCGG--CTTAATATGCCTTTTG-TACATAAT-AGG--AT-AGGTTTACAAAGCGTAA-T-AATGCAA-GGAAAAAT-GTCGAATAAACATGATTTGT-AAAT-AAT-ACACTTAGAAGAAGAA-T--ATTTGCCTCAGACTAAAC-TT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTT-T-AATTAGGAAAGAAAATATCAG-AAGTAGCA
gi|7 : gTTATGG-CGGCCTGTTT---CAATTT-CAAG-ATTGTGA-GAAG------TCTAATTCGG--C-TAATATACCTTTTG-TACATATT-AGGT-AT-AGGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-ATT-AACATG-TTTGT-A----AGT-ACACTTAGAAGAACAA-TTAATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAA---------AG-AAGTAGCATTCTCTTG-TTCA-TAC-C-AAAT-ATATCC
gi|8 : cacaTA-T-ACTTT--AAA-AGACG-TACATCTCAAT----A-TAT---TAT--G--GCAATATGTATACA-TGTACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT----CA-G-----ATA--AA-GGA-GAA----CA-------AC---T-------------GTTATCCCGCA-TCTTTAAA------AATGCAAG-AT-G-TATATATTTCC-CCAA--ACTG-C----A-AAGT-----TCG-TGTA---TA-TTAT--GAAC-ACTT---AATAACTGTA--CAAACTT--A--AA------AACAGATGGTTTTTGCCA--ATAGTA--TTNC---------TA--T---G-A-taaccctatctcatacaatttttcttttaagcaataggcccaatttttgctgcaattcttcaacctgtcacaactgtaatataatctgtca
gi|9 : acaA-AGACC-TGCATCTTATC----A-CACCAGTGT--T--ACTTTA-------A-T--ACATT-AGAAAGATGGCAGACAATGCAT--GGTGCTGTACAAATA---ACATGT----CTA----------------CCTCCTTTTAC---TTT-TAA--AGAAGGTTTTCTTGCAA-CTT---A------AATGCAAG-GC-A-TGAATAATTCT-CAAA--GTTA-C----A-AAGG-----ACT-TGGA--C-A-TTTT--GAAC-ACTTTAAAATAGTTGTA--CAAATTTG-A--AA------AG-AGATGTCTTTTGC-AT-GTGGTA--CTTT---------T---T---ATA-TATAT---TTATG---ACG-A-AG------TTTCT-TG-AATacactaataactgtacaaacttaaaaacagatgtttttgccaatagtatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTACGAAATATATTCAGACTCAGTGTCATACATTGTTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCAC
Unaligned ( gi|17 ): TTTACGAAATATATTCAGACTCATGTCATACATTGTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCACT
Alignments
lowQualScore : 22 22222 1111 11111 1111111111111111 222222222222 1 111111 111111 11111 2222 1111 11 111111 22 222 2222222222222222222222 111 111111 11111 1111 1111 1 3333 2222222 1 1 1 1 1 1 1
lowQualScore : 22 0 1 00000 66 2222 0 5 4 22222 3 4 55 4 6 0 7777 55 2222222222222222 2 1 3 7777 000000000000 3 7 5 5 777 111111 4 44 4 1 4 66 333333 8 11111 4 3333 4 66 4 8888 55 1 55 66 222222 8 1 11 000 7777777777777777777777 888 666 8 4 555555 4 4 8 8 11111 1 4 3333 5 0000 66 5 0 5 0 3333 5555555 5 5 0 5 4 8 777 2 4 4 4 4 66 66 5 0 8 4 4 4 5 5 0 4 4 55 4 4 4 4 1 5 5 2 5 5 5 0 5 9 0 5 2 5 5 1 5 5 5
lowQualScore : .. . . ..... .. .... . . . ..... . . .. . . . .... .. ................ . . . .... ............ . . . . ... ...... . .. . . . .. ...... . ..... . .... . .. . .... .. . .. .. ...... . . .. ... ...................... ... ... . . ...... . . . . ..... . . .... . .... .. . . . . .... ....... . . . . . . ... . . . . . .. .. . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . .
lowQualScore : 00 8 0 33333 77 1111 1 0 2 99999 9 0 55 0 6 8 7777 00 9999999999999999 0 4 6 7777 555555555555 6 3 7 5 000 555555 0 55 0 4 0 11 999999 9 11111 4 4444 4 11 4 2222 00 9 44 11 888888 4 9 22 333 8888888888888888888888 888 777 9 4 555555 0 4 9 9 11111 0 4 9999 0 6666 99 0 4 0 0 0000 0000000 0 0 0 0 4 9 888 2 4 4 4 4 11 99 0 0 9 4 4 4 0 0 0 4 4 44 4 4 4 4 1 0 0 5 0 0 0 0 0 4 0 0 4 0 7 4 7 7 7
consensus : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATC----TTATTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACTCT-ATTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
Reference ( family-2779 ) : ATATCT--TTATTGCTTTT-AAAAGACN-TACATC----TTATTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACT---ATTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
gi|1 : TATACATAAA-T--ACATA-A---AAATGGCAC----TGTCT--GGTGGTGTACAAATT----CA-A-----A--TAACAG-A-GAA----CA-------AC---T-TTTAAATAAGATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TTTATATTTCC-CTAA--A-TG------A-AATA-----TCA-TGTA--TTA-TTATTGAAAC-ACTT---AATAGTTGTGG-CAA--TTATA--AA------AACAGATGGTTTTTGCCA--ATAGT----TTT---------TATAT---A-A-TATATATATTATGG--ACG-A-AG------TTCCT-CGTAATA-A-GG-CAAT-----TAAATA-TAAAGGTAGTG-TACTCGTCACTCTGCAAATGTCCAGTT-TTAACATCAATTTAACACACTCT-ATTTTC-----TTTA-A-TTATA-T-TG-TTATGT-CGGCCTGTTT---CAATTT-CAAGA-TTATGA-G-AAG--ATAGTCTAATTCAG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAA------------------GGAAAAATGGTC-AAC-AACATG-TT-TGTAAATAA-T-ACACTTAAAA---CAATC-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTTAT-GA-TAGGAAAGGAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATAT
gi|10 : g-GGGAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACATTTTGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AACAAAAATA-TCTGTCAACC-TTTGTTTTAT-AA-TAAGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCattaaccctatctcatacaatttttcttttatgcaataggcccaattcttgctgcaattcttcaatctgtcacagctgtaatataattcgtcataacaatacaattttcac
gi|11 : TACA---ACG-A-AG------TTCCT-CGTAATG-A-GGGCAAA-----TTAAGA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACGT-AATTTA-CACACTCT-ATTT------------G-GTAT-----G-TTATGG-CGGCCTGTTG---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TTATATGCCTTTTG-TACATATT-AGGTA-T-A-Gtaaccctatctcatacaatttttcttttatgcaataggcctaatttgtgctgcaattcttcaatctgtcacagctgtaatataattcatcataacaatttttaacaatacaattttcact
gi|12 : ATATCT--TTATTGCTT-----AAGACG-TACATCTTAATTATTA-CATTTATAT--A--ACAATATGCATACA-A--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGA-GAA----CA-------ACT--T-TT-AAACAAGATGATTATC
gi|13 : atATCTCGTTATTGCATTA-GGCATACT-TACATC----TTATCA-CATCCAT-------------TACATAAACT--ATATT-GGAATGATCGCAT----TATAT--TGCGGTGTACAGATTTAAACA-GT----ATTTTAACGGT-GAA----TA------------TATT-AAGCAAGAATATTTTCTCACAAT-TT---A------GATGCAAA-AC-A-TAAATATTTCC-atgtagaacataattatagtaggcagattt
gi|14 : ataTTCC-CTAA--ACTG-CCCTAA-GAGTACACATCAGTGTA---CA-TCAT--GCAC-ACTT----ATACTTGTA--CAA--TTA-ATGAACCATATAATAGAGAGTTCT--CCAG-ATAGCA--TTTTAACAAAATAC---T---G-A----AT---TTACGAGAACA-A-AG------TT-TT-CGTACTG-AGGG-CAAGAAATTTTAATA-CAAGG----TGA
gi|15 : ------TTCCC-CGCAATG-ATGG-CAAA-----TCAATA-CAATG----TGATACTCGAC-CTCT------GTC--ATT-TT-GCAG-AATTTA-CATATTCG-ATTT-CATGTATGTACATGTATA-T-TG-TCATGG-CGGTCTGTTT---CAATTT-CAAGA-TTCTGA-A-AAG--ATA
gi|18 : A-T--ACACA-A--AAGATCGCAT----TGTAT--TGTGGAGTATGAATT---CCA-AC---------AACGGG-AAA----TG-------ACT--T-TT-AAACAAGATGGCTATCTAGC-ATTTT---ATGTGCGAGTGCATG-AC-T-TACTTATTaa
gi|19 : atacatcttcaATATT----TA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAATA
gi|2 : tATATCT--TTAATGCTTTTTAAAAGACCCTACATC----T-ATTA-CATTTA-AT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TG-CAT----GGTAT--GGTGGTGTACAA-TT---ATA-AT----A--TAAAAGGA-AAG----AA-------ACACTT-TT-AAACAAGATGATTATCC-GCA-TCTT---A------A--GCAAG-ACTG-TACATATTTCCGCTTA--ACTAAC----ATAAGT-----TCA-TGTAATTTAATTAT--GAAC-ACTT---GATAATTGTAA-CAAATTTA-A--AA------AACA-ATGTGTTTTGCCAG-ATAGTAA-CTTT---------T---TTGAG-A--ATAT---TTACG---ACGTA-AG------TTCCT-CGTAATG-A-GG-GCAA-----TGAATAGTAAAG----TGA-ACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACA---TTTT-C-----TTTA-A-GTATA-TATT-TTATGATCGGCCTGTTT---CAATTT-CAAGA-TTGTGAGG-AAG--ATAGCCT-ATTCGG--C-TAATATGCCTTTTGATACATATTGAGGTA-TAA-GGTTTACAAAG---AATT-ACTGCAT-GGAAAAATGG-C-AA--AACATG--T-TGT-AATAA-T-ACACTTAGAAGAACAATT-AATTTG-CT-A-ACTAAACTTT-GAAATAAAAATACTCCGTCAACCATTTG-TTTATAAA-TAGGAAAGAAAAT-TTAGAAAGTAGCATTCTCTTGATTCACCACGC-AAATGATAT
gi|3 : tatGACG-TACATC----TTATTAACATTTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TGGCAT----GGTAT--GGTGGTGTCAAAATT---ATA-AT----A--TAAAAGGA-GAAACCTTA-------CT---T-TT-AAACAAGATGATTATCC-GCA-TCTT---A------AATG-AAG-AT-G-TACATATTTCC-CTAA---CTAAC----ATAAGT-----TCA-TGTA--TAA-TTAT--GAACTACTT---GATAATTGTAAACAAATTTA-A--AA------AACAGATGGTTTT-GCCAG-ATAGTAACTTTT---------T---T---G-AATATAT---TTACGT--ACGTA-AG------TTCCTGCGTAATG-A-GG-GCAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTAGCACACA---TTTT-C-----TTTA-A-GTATAAT-TGGTTATGGACGGCCTGTTT---CA-TTT-CAAGAATTGTGA-GGAAG--ATAGCCTAATTCGGTCC-TAATATGCCTTTTG-TACATATTGAGGTAAT-AAGGTTTACAAAG-GTAA-TTACTGCAATGGAAAAATG-TC-AAT-AACATG-TTGTG-AAATAAATGACACTTAGAAGAACAATTTAATTTG-CTCA-ACTAAACTTTGG-AAT-AAAATACTCCGTCAACC-TTTG-TTTATAAA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCA-CAC-CAAAAT-ATATCCatc
gi|4 : AT----TGTAT--GGTGGTGTACAAATT---AAG-AT----A-----AAGGA-GAA----CA-------AC---T-TTTAAGCAACATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TATATATTTCC-CTTA--ACTG-C----A-AAGT-----TCA-TGTA--T-A-TTAT--GAAC-ACTT---AATAATTGTA--CAAATTTA-A--AA------A-CA--TGGTTTTTGCCA--ATAGTATTCTTT---------T---T---A-A-TATAT---TTACG---ACG-ACAACATTTTTTTCN-CGTAATG-A-GGGCAAA-----TTAATA-CAAAG----TGATAGTCGTC-CACT----ATGCC--ATT-TTTACAC-ACGTTA-CACTCTTTTATTTTC-----TTTA-A-GCACA-T-TG-TTATGG-CGGTCTGTTTTTTCATTTTTCAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C--AATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAGTGGTC-AAT-AA-ATG-TT-TGTAAATAA-T-ACACTT-GAAGAACAATT-AATTTG-CTCA--CTAAACTTT-T-AATAAA--TA-TCTGTCAACC-TTTGTTTTAT-AA-TAGGACAGAAAATATTAG-AAGCAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCtaac
gi|5 : ATATCT--TTAT-GCTTTT-AAAAGACC-TACATT----CTAGTA-CATTTATAT--A--ACAATATGCATA-A-T--ACATA-ACAAAAATG-CAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGAAGAA----CA-------AC---T-TT-AAACAAGATGATTATCCCGCAATCTT---A------AATGCAAG-AT-G-TACATATTTCC-CTAA--ACTA-C----A-AAGT-----TCA-TGTAA-TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACA-ATGGGTTTTGCCA--ATAGTA--CTTT---------T---T---G-A--ATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----ATTT-C-----TTTA-A-GTATATT-TG-TTATGA-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGCCTAATTCGG--C-TAATATGCCTTTTGATACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-TGACTGCAA-GGAAAAATGGCC-AAA-AACATG-TT-TGTAAATAA-T-ACACTTAGAA-AACAATT-AATTTG-CT-A-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC--TTG-TTTAT-AA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCACCAC-C-AAAT-ATATCCtaaccctatctcatacaatttttcttttatgcaataggcccaatttttgctgcaattcttcaatctgtcacagctg
gi|6 : TA-CATCTCTATCAATTACAATATGCATACA-T--AAATACATAAAAATGGCAC----TGGATTTGGTGGT-TACGA-TT---AAA-GTCAGAA--TAACAG-A-GAA----CA-------CT---T-TT-AAATAAG-TGGTTATCCTGACAGCTT---A------AATGCAAGCAG-GCTTTATATTTCC-TTAATAACTG-C----A-AA-T-----TCA-TGTT--ATA-TTAC--GAAC-ACTTTTTGGTAA----A---AAATTTT-A--AA------AACAACTGGTTTTTGCCAATATA-TA---TTT---------T---T---A-A-TATAT---TTATG---ACG-A-AGC-----TTCCT-CGTAATGCG-GG-CAAA-----TTAATA-CAAAGC---TGATACTCGTC-CTCT----ATGTC--ATTGTTTACAT-AATTTA-C-CACT---ATTT----------A-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CATTTT-CAAGA-TTGTGA-G-AAGATATAGTCTAATTCGG--CTTAATATGCCTTTTG-TACATAAT-AGG-A-T-A-GGTTTACAAAGCGTAA-T-AATGCAA-GGAAAAAT-GTCGAATAAACATGATT-TGTAAATAA-T-ACACTTAGAAGAAGAAT---ATTTGCCTCAGACTAAAC-TT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTT-T-AATTAGGAAAGAAAATATCAG-AAGTAGCA
gi|7 : g-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG------TCTAATTCGG--C-TAATATACCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-ATT-AACATG-TT-TGTA---AG-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAA---------AG-AAGTAGCATTCTCTTG-TTCA-TAC-C-AAAT-ATATCC
gi|8 : cacaTTT-AAAAGACG-TACATC----TCAATA-TAT---TAT--G--GCAATATGTATACA-TGTACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT----CA-G-----A--TAAA-GGA-GAA----CA-------AC---T--------------GTTATCCCGCA-TCTTTAAA------AATGCAAG-AT-G-TATATATTTCC-CCAA--ACTG-C----A-AAGT-----TCG-TGTA---TA-TTAT--GAAC-ACTT---AATAACTGTA--CAAACTT--A--AA------AACAGATGGTTTTTGCCA--ATAGTA--TTNC---------TA--T---G-A-taaccctatctcatacaatttttcttttaagcaataggcccaatttttgctgcaattcttcaacctgtcacaactgtaatataatctgtca
gi|9 : acatatacATCTCATTATTGCGT-----AAGACC-TGCATC----TTATCA-CACCAGTGT--T--ACTTTA-------A-T--ACATT-AGAAAGATGGCAGACAATGCAT--GGTGCTGTACAAATA---ACATGT----C--TA--------------CCTCCTTTTAC---T-TT-TAA--AGAAGGTTTTCTTGCAA-CTT---A------AATGCAAG-GC-A-TGAATAATTCT-CAAA--GTTA-C----A-AAGG-----ACT-TGGA--C-A-TTTT--GAAC-ACTTTAAAATAGTTGTA--CAAATTTG-A--AA------AG-AGATGTCTTTTGC-AT-GTGGTA--CTTT---------T---T---ATA-TATAT---TTATG---ACG-A-AG------TTTCT-TG-AATacactaataactgtacaaacttaaaaacagatgtttttgccaatagtatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTACGAAATATATTCAGACTCAGTGTCATACATTGTTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCAC
Unaligned ( gi|17 ): TTTACGAAATATATTCAGACTCATGTCATACATTGTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCACT
Alignments
lowQualScore : 33 22222 1111 11111 1111111111111111 222222222222 1 111111 111111 11111 2222 1111 11 111111 22 222 2222222222222222222222 111 111111 11111 1111 1111 1 33333 2222222 1 1 1 1 1 1 1
lowQualScore : 66 0 1 00000 66 0 2222 5 4 22222 3 4 55 4 6 0 7777 55 2222222222222222 2 1 3 7777 000000000000 3 7 5 5 777 111111 4 44 4 1 4 66 333333 8 11111 4 3333 4 66 4 8888 55 1 55 66 222222 8 1 11 000 7777777777777777777777 888 666 8 4 555555 4 4 8 8 11111 1 4 3333 5 0000 66 5 0 5 0 00000 5 5555555 5 5 0 5 4 8 777 2 4 4 4 4 66 66 5 0 8 4 4 4 5 5 0 4 4 55 4 4 4 4 1 5 5 2 5 5 5 0 5 9 0 5 2 5 5 1 5 5 5
lowQualScore : .. . . ..... .. . .... . . ..... . . .. . . . .... .. ................ . . . .... ............ . . . . ... ...... . .. . . . .. ...... . ..... . .... . .. . .... .. . .. .. ...... . . .. ... ...................... ... ... . . ...... . . . . ..... . . .... . .... .. . . . . ..... . ....... . . . . . . ... . . . . . .. .. . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . .
lowQualScore : 00 8 0 33333 77 1 1111 0 2 99999 9 0 55 0 6 8 7777 00 9999999999999999 0 4 6 7777 555555555555 6 3 7 5 000 555555 0 55 0 4 0 11 999999 9 11111 4 4444 4 11 4 2222 00 9 44 11 888888 4 9 22 333 8888888888888888888888 888 777 9 4 555555 0 4 9 9 11111 0 4 9999 0 6666 99 0 4 0 0 00000 0 0000000 0 0 0 0 4 9 888 2 4 4 4 4 11 99 0 0 9 4 4 4 0 0 0 4 4 44 4 4 4 4 1 0 0 5 0 0 0 0 0 4 0 0 4 0 7 4 7 7 7
consensus : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-TCT-A-TTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
Reference ( family-2779 ) : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-TCT-A-TTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
gi|1 : TATACATAAA-T--ACATA-A---AAATGGCAC----TGTCT--GGTGGTGTACAAATT----CA-A-----A--TAACAG-A-GAA----CA-------AC---T-TTTAAATAAGATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TTTATATTTCC-CTAA--A-TG------A-AATA-----TCA-TGTA--TTA-TTATTGAAAC-ACTT---AATAGTTGTGG-CAA--TTATA--AA------AACAGATGGTTTTTGCCA--ATAGT----TTT---------TATAT---A-A-TATATATATTATGG--ACG-A-AG------TTCCT-CGTAATA-A-GG-CAAT-----TAAATA-TAAAGGTAGTG-TACTCGTCACTCTGCAAATGTCCAGTT-TTAACATCAATTTAACACAC-TCT-A-TTTTC-----TTTA-A-TTATA-T-TG-TTATGT-CGGCCTGTTT---CAATTT-CAAGA-TTATGA-G-AAG--ATAGTCTAATTCAG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAA------------------GGAAAAATGGTC-AAC-AACATG-TT-TGTAAATAA-T-ACACTTAAAA---CAATC-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTTAT-GA-TAGGAAAGGAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATAT
gi|10 : g-GGGAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACATTTTGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AACAAAAATA-TCTGTCAACC-TTTGTTTTAT-AA-TAAGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCattaaccctatctcatacaatttttcttttatgcaataggcccaattcttgctgcaattcttcaatctgtcacagctgtaatataattcgtcataacaatacaattttcac
gi|11 : TACA---ACG-A-AG------TTCCT-CGTAATG-A-GGGCAAA-----TTAAGA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACGT-AATTTA-CACAC-TCT-A-TTT------------G-GTAT-----G-TTATGG-CGGCCTGTTG---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TTATATGCCTTTTG-TACATATT-AGGTA-T-A-Gtaaccctatctcatacaatttttcttttatgcaataggcctaatttgtgctgcaattcttcaatctgtcacagctgtaatataattcatcataacaatttttaacaatacaattttcact
gi|12 : ATATCT--TTATTGCTT-----AAGACG-TACATCTTAATTATTA-CATTTATAT--A--ACAATATGCATACA-A--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGA-GAA----CA-------ACT--T-TT-AAACAAGATGATTATC
gi|13 : atATCTCGTTATTGCATTA-GGCATACT-TACATCTTA----TCA-CATCCAT-------------TACATAAACT--ATATT-GGAATGATCGCAT----TATAT--TGCGGTGTACAGATTTAAACA-GT----ATTTTAACGGT-GAA----TA------------TATT-AAGCAAGAATATTTTCTCACAAT-TT---A------GATGCAAA-AC-A-TAAATATTTCC-atgtagaacataattatagtaggcagattt
gi|14 : ataTTCC-CTAA--ACTG-CCCTAA-GAGTACACATCAGTGTA---CA-TCAT--GCAC-ACTT----ATACTTGTA--CAA--TTA-ATGAACCATATAATAGAGAGTTCT--CCAG-ATAGCA--TTTTAACAAAATAC---T---G-A----AT---TTACGAGAACA-A-AG------TT-TT-CGTACTG-AGGG-CAAGAAATTTTAATA-CAAGG----TGA
gi|15 : ------TTCCC-CGCAATG-ATGG-CAAA-----TCAATA-CAATG----TGATACTCGAC-CTCT------GTC--ATT-TT-GCAG-AATTTA-CATAT-TCG-A-TTT-CATGTATGTACATGTATA-T-TG-TCATGG-CGGTCTGTTT---CAATTT-CAAGA-TTCTGA-A-AAG--ATA
gi|18 : A-T--ACACA-A--AAGATCGCAT----TGTAT--TGTGGAGTATGAATT---CCA-AC---------AACGGG-AAA----TG-------ACT--T-TT-AAACAAGATGGCTATCTAGC-ATTTT---ATGTGCGAGTGCATG-AC-T-TACTTATTaa
gi|19 : atacatcttcaATATT----TA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAATA
gi|2 : tATATCT--TTAATGCTTTTTAAAAGACCCTACATCT-A----TTA-CATTTA-AT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TG-CAT----GGTAT--GGTGGTGTACAA-TT---ATA-AT----A--TAAAAGGA-AAG----AA-------ACACTT-TT-AAACAAGATGATTATCC-GCA-TCTT---A------A--GCAAG-ACTG-TACATATTTCCGCTTA--ACTAAC----ATAAGT-----TCA-TGTAATTTAATTAT--GAAC-ACTT---GATAATTGTAA-CAAATTTA-A--AA------AACA-ATGTGTTTTGCCAG-ATAGTAA-CTTT---------T---TTGAG-A--ATAT---TTACG---ACGTA-AG------TTCCT-CGTAATG-A-GG-GCAA-----TGAATAGTAAAG----TGA-ACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-----ATTTT-C-----TTTA-A-GTATA-TATT-TTATGATCGGCCTGTTT---CAATTT-CAAGA-TTGTGAGG-AAG--ATAGCCT-ATTCGG--C-TAATATGCCTTTTGATACATATTGAGGTA-TAA-GGTTTACAAAG---AATT-ACTGCAT-GGAAAAATGG-C-AA--AACATG--T-TGT-AATAA-T-ACACTTAGAAGAACAATT-AATTTG-CT-A-ACTAAACTTT-GAAATAAAAATACTCCGTCAACCATTTG-TTTATAAA-TAGGAAAGAAAAT-TTAGAAAGTAGCATTCTCTTGATTCACCACGC-AAATGATAT
gi|3 : tatGACG-TACATCTTA----TTAACATTTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TGGCAT----GGTAT--GGTGGTGTCAAAATT---ATA-AT----A--TAAAAGGA-GAAACCTTA-------CT---T-TT-AAACAAGATGATTATCC-GCA-TCTT---A------AATG-AAG-AT-G-TACATATTTCC-CTAA---CTAAC----ATAAGT-----TCA-TGTA--TAA-TTAT--GAACTACTT---GATAATTGTAAACAAATTTA-A--AA------AACAGATGGTTTT-GCCAG-ATAGTAACTTTT---------T---T---G-AATATAT---TTACGT--ACGTA-AG------TTCCTGCGTAATG-A-GG-GCAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTAGCACACAT-----TTT-C-----TTTA-A-GTATAAT-TGGTTATGGACGGCCTGTTT---CA-TTT-CAAGAATTGTGA-GGAAG--ATAGCCTAATTCGGTCC-TAATATGCCTTTTG-TACATATTGAGGTAAT-AAGGTTTACAAAG-GTAA-TTACTGCAATGGAAAAATG-TC-AAT-AACATG-TTGTG-AAATAAATGACACTTAGAAGAACAATTTAATTTG-CTCA-ACTAAACTTTGG-AAT-AAAATACTCCGTCAACC-TTTG-TTTATAAA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCA-CAC-CAAAAT-ATATCCatc
gi|4 : AT----TGTAT--GGTGGTGTACAAATT---AAG-AT----A-----AAGGA-GAA----CA-------AC---T-TTTAAGCAACATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TATATATTTCC-CTTA--ACTG-C----A-AAGT-----TCA-TGTA--T-A-TTAT--GAAC-ACTT---AATAATTGTA--CAAATTTA-A--AA------A-CA--TGGTTTTTGCCA--ATAGTATTCTTT---------T---T---A-A-TATAT---TTACG---ACG-ACAACATTTTTTTCN-CGTAATG-A-GGGCAAA-----TTAATA-CAAAG----TGATAGTCGTC-CACT----ATGCC--ATT-TTTACAC-ACGTTA-CACTC-TTTTA-TTTTC-----TTTA-A-GCACA-T-TG-TTATGG-CGGTCTGTTTTTTCATTTTTCAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C--AATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAGTGGTC-AAT-AA-ATG-TT-TGTAAATAA-T-ACACTT-GAAGAACAATT-AATTTG-CTCA--CTAAACTTT-T-AATAAA--TA-TCTGTCAACC-TTTGTTTTAT-AA-TAGGACAGAAAATATTAG-AAGCAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCtaac
gi|5 : ATATCT--TTAT-GCTTTT-AAAAGACC-TACATTCTA----GTA-CATTTATAT--A--ACAATATGCATA-A-T--ACATA-ACAAAAATG-CAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGAAGAA----CA-------AC---T-TT-AAACAAGATGATTATCCCGCAATCTT---A------AATGCAAG-AT-G-TACATATTTCC-CTAA--ACTA-C----A-AAGT-----TCA-TGTAA-TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACA-ATGGGTTTTGCCA--ATAGTA--CTTT---------T---T---G-A--ATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-----A-TTT-C-----TTTA-A-GTATATT-TG-TTATGA-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGCCTAATTCGG--C-TAATATGCCTTTTGATACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-TGACTGCAA-GGAAAAATGGCC-AAA-AACATG-TT-TGTAAATAA-T-ACACTTAGAA-AACAATT-AATTTG-CT-A-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC--TTG-TTTAT-AA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCACCAC-C-AAAT-ATATCCtaaccctatctcatacaatttttcttttatgcaataggcccaatttttgctgcaattcttcaatctgtcacagctg
gi|6 : TA-CATCTCTATCAATTACAATATGCATACA-T--AAATACATAAAAATGGCAC----TGGATTTGGTGGT-TACGA-TT---AAA-GTCAGAA--TAACAG-A-GAA----CA-------CT---T-TT-AAATAAG-TGGTTATCCTGACAGCTT---A------AATGCAAGCAG-GCTTTATATTTCC-TTAATAACTG-C----A-AA-T-----TCA-TGTT--ATA-TTAC--GAAC-ACTTTTTGGTAA----A---AAATTTT-A--AA------AACAACTGGTTTTTGCCAATATA-TA---TTT---------T---T---A-A-TATAT---TTATG---ACG-A-AGC-----TTCCT-CGTAATGCG-GG-CAAA-----TTAATA-CAAAGC---TGATACTCGTC-CTCT----ATGTC--ATTGTTTACAT-AATTTA-C-CAC-T---A-TTT----------A-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CATTTT-CAAGA-TTGTGA-G-AAGATATAGTCTAATTCGG--CTTAATATGCCTTTTG-TACATAAT-AGG-A-T-A-GGTTTACAAAGCGTAA-T-AATGCAA-GGAAAAAT-GTCGAATAAACATGATT-TGTAAATAA-T-ACACTTAGAAGAAGAAT---ATTTGCCTCAGACTAAAC-TT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTT-T-AATTAGGAAAGAAAATATCAG-AAGTAGCA
gi|7 : g-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG------TCTAATTCGG--C-TAATATACCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-ATT-AACATG-TT-TGTA---AG-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAA---------AG-AAGTAGCATTCTCTTG-TTCA-TAC-C-AAAT-ATATCC
gi|8 : cacaTTT-AAAAGACG-TACATCTCA----ATA-TAT---TAT--G--GCAATATGTATACA-TGTACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT----CA-G-----A--TAAA-GGA-GAA----CA-------AC---T--------------GTTATCCCGCA-TCTTTAAA------AATGCAAG-AT-G-TATATATTTCC-CCAA--ACTG-C----A-AAGT-----TCG-TGTA---TA-TTAT--GAAC-ACTT---AATAACTGTA--CAAACTT--A--AA------AACAGATGGTTTTTGCCA--ATAGTA--TTNC---------TA--T---G-A-taaccctatctcatacaatttttcttttaagcaataggcccaatttttgctgcaattcttcaacctgtcacaactgtaatataatctgtca
gi|9 : acatatacATCTCATTATTGCGT-----AAGACC-TGCATCTTA----TCA-CACCAGTGT--T--ACTTTA-------A-T--ACATT-AGAAAGATGGCAGACAATGCAT--GGTGCTGTACAAATA---ACATGT----C--TA--------------CCTCCTTTTAC---T-TT-TAA--AGAAGGTTTTCTTGCAA-CTT---A------AATGCAAG-GC-A-TGAATAATTCT-CAAA--GTTA-C----A-AAGG-----ACT-TGGA--C-A-TTTT--GAAC-ACTTTAAAATAGTTGTA--CAAATTTG-A--AA------AG-AGATGTCTTTTGC-AT-GTGGTA--CTTT---------T---T---ATA-TATAT---TTATG---ACG-A-AG------TTTCT-TG-AATacactaataactgtacaaacttaaaaacagatgtttttgccaatagtatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTACGAAATATATTCAGACTCAGTGTCATACATTGTTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCAC
Unaligned ( gi|17 ): TTTACGAAATATATTCAGACTCATGTCATACATTGTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCACT
Alignments
lowQualScore : 33 22222 1111 11111 1111111111111111 222222222222 1 111111 111111 11111 2222 1111 11 111111 22 222 2222222222222222222222 111 111111 11111 1111 1111 1 33333 2222222 1 1 1 1 1 1 1
lowQualScore : 66 0 1 00000 66 0 2222 5 4 22222 3 4 55 4 6 0 7777 55 2222222222222222 2 1 3 7777 000000000000 3 7 5 5 777 111111 4 44 4 1 4 66 333333 8 11111 4 3333 4 66 4 8888 55 1 55 66 222222 8 1 11 000 7777777777777777777777 888 666 8 4 555555 4 4 8 8 11111 1 4 3333 5 0000 66 5 0 5 0 00000 5 5555555 5 5 0 5 4 8 777 2 4 4 4 4 66 66 5 0 8 4 4 4 5 5 0 4 4 55 4 4 4 4 1 5 5 2 5 5 5 0 5 9 0 5 2 5 5 1 5 5 5
lowQualScore : .. . . ..... .. . .... . . ..... . . .. . . . .... .. ................ . . . .... ............ . . . . ... ...... . .. . . . .. ...... . ..... . .... . .. . .... .. . .. .. ...... . . .. ... ...................... ... ... . . ...... . . . . ..... . . .... . .... .. . . . . ..... . ....... . . . . . . ... . . . . . .. .. . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . .
lowQualScore : 00 8 0 33333 77 1 1111 0 2 99999 9 0 55 0 6 8 7777 00 9999999999999999 0 4 6 7777 555555555555 6 3 7 5 000 555555 0 55 0 4 0 11 999999 9 11111 4 4444 4 11 4 2222 00 9 44 11 888888 4 9 22 333 8888888888888888888888 888 777 9 4 555555 0 4 9 9 11111 0 4 9999 0 6666 99 0 4 0 0 00000 0 0000000 0 0 0 0 4 9 888 2 4 4 4 4 11 99 0 0 9 4 4 4 0 0 0 4 4 44 4 4 4 4 1 0 0 5 0 0 0 0 0 4 0 0 4 0 7 4 7 7 7
consensus : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-TCT-A-TTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
Reference ( family-2779 ) : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-TCT-A-TTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
gi|1 : TATACATAAA-T--ACATA-A---AAATGGCAC----TGTCT--GGTGGTGTACAAATT----CA-A-----A--TAACAG-A-GAA----CA-------AC---T-TTTAAATAAGATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TTTATATTTCC-CTAA--A-TG------A-AATA-----TCA-TGTA--TTA-TTATTGAAAC-ACTT---AATAGTTGTGG-CAA--TTATA--AA------AACAGATGGTTTTTGCCA--ATAGT----TTT---------TATAT---A-A-TATATATATTATGG--ACG-A-AG------TTCCT-CGTAATA-A-GG-CAAT-----TAAATA-TAAAGGTAGTG-TACTCGTCACTCTGCAAATGTCCAGTT-TTAACATCAATTTAACACAC-TCT-A-TTTTC-----TTTA-A-TTATA-T-TG-TTATGT-CGGCCTGTTT---CAATTT-CAAGA-TTATGA-G-AAG--ATAGTCTAATTCAG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAA------------------GGAAAAATGGTC-AAC-AACATG-TT-TGTAAATAA-T-ACACTTAAAA---CAATC-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTTAT-GA-TAGGAAAGGAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATAT
gi|10 : g-GGGAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACATTTTGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AACAAAAATA-TCTGTCAACC-TTTGTTTTAT-AA-TAAGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCattaaccctatctcatacaatttttcttttatgcaataggcccaattcttgctgcaattcttcaatctgtcacagctgtaatataattcgtcataacaatacaattttcac
gi|11 : TACA---ACG-A-AG------TTCCT-CGTAATG-A-GGGCAAA-----TTAAGA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACGT-AATTTA-CACAC-TCT-A-TTT------------G-GTAT-----G-TTATGG-CGGCCTGTTG---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TTATATGCCTTTTG-TACATATT-AGGTA-T-A-Gtaaccctatctcatacaatttttcttttatgcaataggcctaatttgtgctgcaattcttcaatctgtcacagctgtaatataattcatcataacaatttttaacaatacaattttcact
gi|12 : ATATCT--TTATTGCTT-----AAGACG-TACATCTTAATTATTA-CATTTATAT--A--ACAATATGCATACA-A--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGA-GAA----CA-------ACT--T-TT-AAACAAGATGATTATC
gi|13 : atATCTCGTTATTGCATTA-GGCATACT-TACATCTTA----TCA-CATCCAT-------------TACATAAACT--ATATT-GGAATGATCGCAT----TATAT--TGCGGTGTACAGATTTAAACA-GT----ATTTTAACGGT-GAA----TA------------TATT-AAGCAAGAATATTTTCTCACAAT-TT---A------GATGCAAA-AC-A-TAAATATTTCC-atgtagaacataattatagtaggcagattt
gi|14 : ataTTCC-CTAA--ACTG-CCCTAA-GAGTACACATCAGTGTA---CA-TCAT--GCAC-ACTT----ATACTTGTA--CAA--TTA-ATGAACCATATAATAGAGAGTTCT--CCAG-ATAGCA--TTTTAACAAAATAC---T---G-A----AT---TTACGAGAACA-A-AG------TT-TT-CGTACTG-AGGG-CAAGAAATTTTAATA-CAAGG----TGA
gi|15 : ------TTCCC-CGCAATG-ATGG-CAAA-----TCAATA-CAATG----TGATACTCGAC-CTCT------GTC--ATT-TT-GCAG-AATTTA-CATAT-TCG-A-TTT-CATGTATGTACATGTATA-T-TG-TCATGG-CGGTCTGTTT---CAATTT-CAAGA-TTCTGA-A-AAG--ATA
gi|18 : A-T--ACACA-A--AAGATCGCAT----TGTAT--TGTGGAGTATGAATT---CCA-AC---------AACGGG-AAA----TG-------ACT--T-TT-AAACAAGATGGCTATCTAGC-ATTTT---ATGTGCGAGTGCATG-AC-T-TACTTATTaa
gi|19 : atacatcttcaATATT----TA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAATA
gi|2 : tATATCT--TTAATGCTTTTTAAAAGACCCTACATCT-A----TTA-CATTTA-AT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TG-CAT----GGTAT--GGTGGTGTACAA-TT---ATA-AT----A--TAAAAGGA-AAG----AA-------ACACTT-TT-AAACAAGATGATTATCC-GCA-TCTT---A------A--GCAAG-ACTG-TACATATTTCCGCTTA--ACTAAC----ATAAGT-----TCA-TGTAATTTAATTAT--GAAC-ACTT---GATAATTGTAA-CAAATTTA-A--AA------AACA-ATGTGTTTTGCCAG-ATAGTAA-CTTT---------T---TTGAG-A--ATAT---TTACG---ACGTA-AG------TTCCT-CGTAATG-A-GG-GCAA-----TGAATAGTAAAG----TGA-ACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-----ATTTT-C-----TTTA-A-GTATA-TATT-TTATGATCGGCCTGTTT---CAATTT-CAAGA-TTGTGAGG-AAG--ATAGCCT-ATTCGG--C-TAATATGCCTTTTGATACATATTGAGGTA-TAA-GGTTTACAAAG---AATT-ACTGCAT-GGAAAAATGG-C-AA--AACATG--T-TGT-AATAA-T-ACACTTAGAAGAACAATT-AATTTG-CT-A-ACTAAACTTT-GAAATAAAAATACTCCGTCAACCATTTG-TTTATAAA-TAGGAAAGAAAAT-TTAGAAAGTAGCATTCTCTTGATTCACCACGC-AAATGATAT
gi|3 : tatGACG-TACATCTTA----TTAACATTTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TGGCAT----GGTAT--GGTGGTGTCAAAATT---ATA-AT----A--TAAAAGGA-GAAACCTTA-------CT---T-TT-AAACAAGATGATTATCC-GCA-TCTT---A------AATG-AAG-AT-G-TACATATTTCC-CTAA---CTAAC----ATAAGT-----TCA-TGTA--TAA-TTAT--GAACTACTT---GATAATTGTAAACAAATTTA-A--AA------AACAGATGGTTTT-GCCAG-ATAGTAACTTTT---------T---T---G-AATATAT---TTACGT--ACGTA-AG------TTCCTGCGTAATG-A-GG-GCAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTAGCACACAT-----TTT-C-----TTTA-A-GTATAAT-TGGTTATGGACGGCCTGTTT---CA-TTT-CAAGAATTGTGA-GGAAG--ATAGCCTAATTCGGTCC-TAATATGCCTTTTG-TACATATTGAGGTAAT-AAGGTTTACAAAG-GTAA-TTACTGCAATGGAAAAATG-TC-AAT-AACATG-TTGTG-AAATAAATGACACTTAGAAGAACAATTTAATTTG-CTCA-ACTAAACTTTGG-AAT-AAAATACTCCGTCAACC-TTTG-TTTATAAA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCA-CAC-CAAAAT-ATATCCatc
gi|4 : AT----TGTAT--GGTGGTGTACAAATT---AAG-AT----A-----AAGGA-GAA----CA-------AC---T-TTTAAGCAACATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TATATATTTCC-CTTA--ACTG-C----A-AAGT-----TCA-TGTA--T-A-TTAT--GAAC-ACTT---AATAATTGTA--CAAATTTA-A--AA------A-CA--TGGTTTTTGCCA--ATAGTATTCTTT---------T---T---A-A-TATAT---TTACG---ACG-ACAACATTTTTTTCN-CGTAATG-A-GGGCAAA-----TTAATA-CAAAG----TGATAGTCGTC-CACT----ATGCC--ATT-TTTACAC-ACGTTA-CACTC-TTTTA-TTTTC-----TTTA-A-GCACA-T-TG-TTATGG-CGGTCTGTTTTTTCATTTTTCAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C--AATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAGTGGTC-AAT-AA-ATG-TT-TGTAAATAA-T-ACACTT-GAAGAACAATT-AATTTG-CTCA--CTAAACTTT-T-AATAAA--TA-TCTGTCAACC-TTTGTTTTAT-AA-TAGGACAGAAAATATTAG-AAGCAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCtaac
gi|5 : ATATCT--TTAT-GCTTTT-AAAAGACC-TACATTCTA----GTA-CATTTATAT--A--ACAATATGCATA-A-T--ACATA-ACAAAAATG-CAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGAAGAA----CA-------AC---T-TT-AAACAAGATGATTATCCCGCAATCTT---A------AATGCAAG-AT-G-TACATATTTCC-CTAA--ACTA-C----A-AAGT-----TCA-TGTAA-TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACA-ATGGGTTTTGCCA--ATAGTA--CTTT---------T---T---G-A--ATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-----A-TTT-C-----TTTA-A-GTATATT-TG-TTATGA-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGCCTAATTCGG--C-TAATATGCCTTTTGATACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-TGACTGCAA-GGAAAAATGGCC-AAA-AACATG-TT-TGTAAATAA-T-ACACTTAGAA-AACAATT-AATTTG-CT-A-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC--TTG-TTTAT-AA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCACCAC-C-AAAT-ATATCCtaaccctatctcatacaatttttcttttatgcaataggcccaatttttgctgcaattcttcaatctgtcacagctg
gi|6 : TA-CATCTCTATCAATTACAATATGCATACA-T--AAATACATAAAAATGGCAC----TGGATTTGGTGGT-TACGA-TT---AAA-GTCAGAA--TAACAG-A-GAA----CA-------CT---T-TT-AAATAAG-TGGTTATCCTGACAGCTT---A------AATGCAAGCAG-GCTTTATATTTCC-TTAATAACTG-C----A-AA-T-----TCA-TGTT--ATA-TTAC--GAAC-ACTTTTTGGTAA----A---AAATTTT-A--AA------AACAACTGGTTTTTGCCAATATA-TA---TTT---------T---T---A-A-TATAT---TTATG---ACG-A-AGC-----TTCCT-CGTAATGCG-GG-CAAA-----TTAATA-CAAAGC---TGATACTCGTC-CTCT----ATGTC--ATTGTTTACAT-AATTTA-C-CAC-T---A-TTT----------A-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CATTTT-CAAGA-TTGTGA-G-AAGATATAGTCTAATTCGG--CTTAATATGCCTTTTG-TACATAAT-AGG-A-T-A-GGTTTACAAAGCGTAA-T-AATGCAA-GGAAAAAT-GTCGAATAAACATGATT-TGTAAATAA-T-ACACTTAGAAGAAGAAT---ATTTGCCTCAGACTAAAC-TT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTT-T-AATTAGGAAAGAAAATATCAG-AAGTAGCA
gi|7 : g-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG------TCTAATTCGG--C-TAATATACCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-ATT-AACATG-TT-TGTA---AG-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAA---------AG-AAGTAGCATTCTCTTG-TTCA-TAC-C-AAAT-ATATCC
gi|8 : cacaTTT-AAAAGACG-TACATCTCA----ATA-TAT---TAT--G--GCAATATGTATACA-TGTACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT----CA-G-----A--TAAA-GGA-GAA----CA-------AC---T--------------GTTATCCCGCA-TCTTTAAA------AATGCAAG-AT-G-TATATATTTCC-CCAA--ACTG-C----A-AAGT-----TCG-TGTA---TA-TTAT--GAAC-ACTT---AATAACTGTA--CAAACTT--A--AA------AACAGATGGTTTTTGCCA--ATAGTA--TTNC---------TA--T---G-A-taaccctatctcatacaatttttcttttaagcaataggcccaatttttgctgcaattcttcaacctgtcacaactgtaatataatctgtca
gi|9 : acatatacATCTCATTATTGCGT-----AAGACC-TGCATCTTA----TCA-CACCAGTGT--T--ACTTTA-------A-T--ACATT-AGAAAGATGGCAGACAATGCAT--GGTGCTGTACAAATA---ACATGT----C--TA--------------CCTCCTTTTAC---T-TT-TAA--AGAAGGTTTTCTTGCAA-CTT---A------AATGCAAG-GC-A-TGAATAATTCT-CAAA--GTTA-C----A-AAGG-----ACT-TGGA--C-A-TTTT--GAAC-ACTTTAAAATAGTTGTA--CAAATTTG-A--AA------AG-AGATGTCTTTTGC-AT-GTGGTA--CTTT---------T---T---ATA-TATAT---TTATG---ACG-A-AG------TTTCT-TG-AATacactaataactgtacaaacttaaaaacagatgtttttgccaatagtatttt
blockSeqs : CG A TTTAA CC . A C CAATT C C GT C C ACAA TT TAAACAGTATT A G A ACCT TCCTTTTAC A T C A TAA TGTGCG C CT C A G TA CCCTA T ACACA G ATTT A . T TTTG AA A A TG CCATAT G T AT ACT AACAAAATACTGA . AGA T C CATTTT G C G G AAATT T G C . . . G . G TTTT T CATGTA C T A A G T TTT A T A G G AT TC T A G A A A C T T T G TA A G A G G T C C G G A C A T A T A A A C G A G
blockSeqs : CA T TAGG T . . T A A . . . G . . AAAGTCAGAA C G . . ACACT . . A A . . . C . C . . AC T . . ATT . . . TAAA A A A . . G T G TTC TTTGAGA . T T . C . . T G . T . . . . . . . . TCT . TC . . T . . A . A . . . . . . . A G . . . . . G . . T . . . . G . . C . . . C . T A . A . . C . . .
blockSeqs : . T TTAA G . . T A C . . . C . . ACATGTC C G . . ACT . . C A . . . C . C . . AC . . . TA . . . G . A A . . A T G AC TTGAAT . . . . . . . . . . C . . . . . . . . TCG . C . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . G . . C . . . . . T . . A . . . . . .
blockSeqs : . G TTAA C . . T A C . . . C . . ATAATA A G . . ACT . . C A . . . T . C . . C . . . AT . . . G . A A . . G T G T TTATAT . . . . . . . . . . G . . . . . . . . AT . C . . . . . . . T . . . . . . . . . . . . . . . . . T . . . . G . . C . . . . . T . . . . . . . . .
blockSeqs : . G . . C G C . . . C . . ATAATA A G . . CT . . T A . . . T . T . . C . . . C . . . A . A A . . G T T C TTAAT . . . . . . . . . . G . . . . . . . . T . C . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . G . . C . . . . . . . . . . . . . . .
blockSeqs : C . . C T C . . . T . . ATAATA A G . . AC . . C . . . . T . C . . C . . . T . . . G . A T . . . T . T TTAAT . . . . . . . . . . T . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . A . . . . G . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C . . AAGATA A G . . AC . . T . . . . G . T . . C . . . T . . . A . A G . . . . . C TTGA . . . . . . . . . . G . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . G . . . . . . . . . . . . .
blockSeqs : . . . . G . . ATAATA A G . . CT . . . . . . . T . T . . C . . . C . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . CCAAC . . . . AC . . . . . . . C . A . . .
blockSeqs : . . CAGA . . . . . . .
blockSeqCons : TTAA* **** ACAGTA********** C***** AT** ** ** A* ** C** TTAAT***************** *** *** **** **** ** T**** C******
originalCons : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-AT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTA--TTA-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCAG-ATAGTA--CTTT---------T---T---G-A-TATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC-TCT-A-TTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
finalCons : ATATCTC-TTATTGCTTTTAA-AAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATTACAGTA----------TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTGC-----A-AAGT-----TCA-TGTAAT--A-TTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCA--ATAGTAC--TTTTTAAT-----------------ATAT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACT----A-TTTC------TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTACGAAATATATTCAGACTCAGTGTCATACATTGTTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCAC
Unaligned ( gi|17 ): TTTACGAAATATATTCAGACTCATGTCATACATTGTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCACT
Alignments
lowQualScore : 33 22222 1111 11111 2222222222222 222222222222 1 111111 111111 11111 111111 1111 11 111111 1 222 111111111 11111 111 111111 11111 1111 1111 1 3333 2222222 1 1 1 1 1 1 1
lowQualScore : 66 0 1 00000 66 0 2222 5 4 22222 3 4 55 4 6 0 7777 55 1111111111111 55 5 1 3 7777 000000000000 3 7 5 5 777 111111 4 44 4 1 4 66 333333 8 11111 4 888888 66 4 8888 55 1 55 66 222222 8 1 3 4 000 777 555555555 22222 888 666 8 4 555555 4 4 8 8 11111 1 4 3333 5 0000 66 5 0 5 0 3333 5555555 5 5 0 5 4 8 777 2 4 4 4 4 66 66 5 0 8 4 4 4 5 5 0 4 4 55 4 4 4 4 1 5 5 2 5 5 5 0 5 9 0 5 2 5 5 1 5 5 5
lowQualScore : .. . . ..... .. . .... . . ..... . . .. . . . .... .. ............. .. . . . .... ............ . . . . ... ...... . .. . . . .. ...... . ..... . ...... .. . .... .. . .. .. ...... . . . . ... ... ......... ..... ... ... . . ...... . . . . ..... . . .... . .... .. . . . . .... ....... . . . . . . ... . . . . . .. .. . . . . . . . . . . . .. . . . . . . . . . . . . . . . . . . . . . . .
lowQualScore : 00 8 0 33333 77 1 1111 0 2 99999 9 0 55 0 6 8 7777 00 8888888888888 00 6 4 6 7777 555555555555 6 3 7 5 000 555555 0 55 0 4 0 11 999999 9 11111 4 111111 11 4 2222 00 9 44 11 888888 4 9 3 4 777 888 555555555 55555 888 777 9 4 555555 0 4 9 9 11111 0 4 9999 0 6666 99 0 4 0 0 0000 0000000 0 0 0 0 4 9 888 2 4 4 4 4 11 99 0 0 9 4 4 4 0 0 0 4 4 44 4 4 4 4 1 0 0 5 0 0 0 0 0 4 0 0 4 0 7 4 7 7 7
consensus : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-GT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTAAT---ATTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCA-ATA-GTA--CTTTT---T--A-AT---AT-----AT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACTCT-ATTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
Reference ( family-2779 ) : ATATCTC-TTATTGCTTTT-AAAAGACN-TACATCTTA----TTA-CATCTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ACA-GT----A--TAAAAGGA-GAA----CA-------AC---T-TT-AAACAAGATGGTTATCCCGCAATCTT---A------AATGCAAG-AC-G-TACATATTTCC-CTAA--ACTG-C----A-AAGT-----TCA-TGTAAT---ATTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACAGATGGTTTTTGCCA-ATA-GTA--CTTTT---T--A-AT---AT-----AT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TNAATA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACT---ATTT-C-----TTTA-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCC
gi|1 : TATACATAAA-T--ACATA-A---AAATGGCAC----TGTCT--GGTGGTGTACAAATT----CA-A-----A--TAACAG-A-GAA----CA-------AC---T-TTTAAATAAGATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TTTATATTTCC-CTAA--A-TG------A-AATA-----TCA-TGTATT---ATTATTGAAAC-ACTT---AATAGTTGTGG-CAA--TTATA--AA------AACAGATGGTTTTTGCCA-ATA-GT----TTTTATAT--A-AT---AT-----ATATATTATGG--ACG-A-AG------TTCCT-CGTAATA-A-GG-CAAT-----TAAATA-TAAAGGTAGTG-TACTCGTCACTCTGCAAATGTCCAGTT-TTAACATCAATTTAACACACTCT-ATTTTC-----TTTA-A-TTATA-T-TG-TTATGT-CGGCCTGTTT---CAATTT-CAAGA-TTATGA-G-AAG--ATAGTCTAATTCAG--C-TAATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAA------------------GGAAAAATGGTC-AAC-AACATG-TT-TGTAAATAA-T-ACACTTAAAA---CAATC-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTTAT-GA-TAGGAAAGGAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATAT
gi|10 : g-GGGAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACATTTTGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AACAAAAATA-TCTGTCAACC-TTTGTTTTAT-AA-TAAGAAAGAAAATATTAG-AAGTAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCattaaccctatctcatacaatttttcttttatgcaataggcccaattcttgctgcaattcttcaatctgtcacagctgtaatataattcgtcataacaatacaattttcac
gi|11 : TACA---ACG-A-AG------TTCCT-CGTAATG-A-GGGCAAA-----TTAAGA-CAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACGT-AATTTA-CACACTCT-ATTT------------G-GTAT-----G-TTATGG-CGGCCTGTTG---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C-TTATATGCCTTTTG-TACATATT-AGGTA-T-A-Gtaaccctatctcatacaatttttcttttatgcaataggcctaatttgtgctgcaattcttcaatctgtcacagctgtaatataattcatcataacaatttttaacaatacaattttcact
gi|12 : ATATCT--TTATTGCTT-----AAGACG-TACATCTTAATTATTA-CATTTATAT--A--ACAATATGCATACA-A--ACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGA-GAA----CA-------ACT--T-TT-AAACAAGATGATTATC
gi|13 : atATCTCGTTATTGCATTA-GGCATACT-TACATCTTA----TCA-CATCCAT-------------TACATAAACT--ATATT-GGAATGATCGCAT----TATAT--TGCGGTGTACAGATTTAAACA-GT----ATTTTAACGGT-GAA----TA------------TATT-AAGCAAGAATATTTTCTCACAAT-TT---A------GATGCAAA-AC-A-TAAATATTTCC-atgtagaacataattatagtaggcagattt
gi|14 : ataTTCC-CTAA--ACTG-CCCTAA-GAGTACACATCAGTGT-AC---ATCAT--GCAC-ACTT----ATACTTGTA--CAA--TTA-ATGAACCATATAATAGAGAGTTCT--CCAGATA-GCA----TTT---T--A-ACAAAATACTGAAT---TTACGAGAACA-A-AG------TT-TT-CGTACTG-AGGG-CAAGAAATTTTAATA-CAAGG----TGA
gi|15 : ------TTCCC-CGCAATG-ATGG-CAAA-----TCAATA-CAATG----TGATACTCGAC-CTCT------GTC--ATT-TT-GCAG-AATTTA-CATATTCG-ATTT-CATGTATGTACATGTATA-T-TG-TCATGG-CGGTCTGTTT---CAATTT-CAAGA-TTCTGA-A-AAG--ATA
gi|18 : A-T--ACACA-A--AAGATCGCAT----TGTAT--TGTGGAGTATGAATT---CCA-------A--CAACGGGA--AA----TG-------ACT--T-TT-AAACAAGATGGCTATCTAGC-ATTTT---ATGTGCGAGTGCATG-AC-T-TACTTATTaa
gi|19 : atacatcttcaATATT----TA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-AAT-AACATG-TT-TGTAAATAA-T-ACACTTAGAAGAATA
gi|2 : tATATCT--TTAATGCTTTTTAAAAGACCCTACATCT-A----TTA-CATTTA-AT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TG-CAT----GGTAT--GGTGGTGTACAA-TT---ATA-AT----A--TAAAAGGA-AAG----AA-------ACACTT-TT-AAACAAGATGATTATCC-GCA-TCTT---A------A--GCAAG-ACTG-TACATATTTCCGCTTA--ACTAAC----ATAAGT-----TCA-TGTAATTTAATTAT--GAAC-ACTT---GATAATTGTAA-CAAATTTA-A--AA------AACA-ATGTGTTTTGCCAGATA-GTAA-CTTTT---TTGA-GA---AT-----AT---TTACG---ACGTA-AG------TTCCT-CGTAATG-A-GG-GCAA-----TGAATAGTAAAG----TGA-ACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACACA---TTTT-C-----TTTA-A-GTATA-TATT-TTATGATCGGCCTGTTT---CAATTT-CAAGA-TTGTGAGG-AAG--ATAGCCT-ATTCGG--C-TAATATGCCTTTTGATACATATTGAGGTA-TAA-GGTTTACAAAG---AATT-ACTGCAT-GGAAAAATGG-C-AA--AACATG--T-TGT-AATAA-T-ACACTTAGAAGAACAATT-AATTTG-CT-A-ACTAAACTTT-GAAATAAAAATACTCCGTCAACCATTTG-TTTATAAA-TAGGAAAGAAAAT-TTAGAAAGTAGCATTCTCTTGATTCACCACGC-AAATGATAT
gi|3 : tatGACG-TACATCTTA----TTAACATTTATAT--A--ACAATATGCATACA-T--ACATA-ACAAAA-TGGCAT----GGTAT--GGTGGTGTCAAAATT---ATA-AT----A--TAAAAGGA-GAAACCTTA-------CT---T-TT-AAACAAGATGATTATCC-GCA-TCTT---A------AATG-AAG-AT-G-TACATATTTCC-CTAA---CTAAC----ATAAGT-----TCA-TGTATA---ATTAT--GAACTACTT---GATAATTGTAAACAAATTTA-A--AA------AACAGATGGTTTT-GCCAGATA-GTAA-CTTTT---TTGA-AT---AT-----AT---TTACGT--ACGTA-AG------TTCCTGCGTAATG-A-GG-GCAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTAGCACACA---TTTT-C-----TTTA-A-GTATAAT-TGGTTATGGACGGCCTGTTT---CA-TTT-CAAGAATTGTGA-GGAAG--ATAGCCTAATTCGGTCC-TAATATGCCTTTTG-TACATATTGAGGTAAT-AAGGTTTACAAAG-GTAA-TTACTGCAATGGAAAAATG-TC-AAT-AACATG-TTGTG-AAATAAATGACACTTAGAAGAACAATTTAATTTG-CTCA-ACTAAACTTTGG-AAT-AAAATACTCCGTCAACC-TTTG-TTTATAAA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCA-CAC-CAAAAT-ATATCCatc
gi|4 : AT----TGTAT--GGTGGTGTACAAATT---A-A-G-----A--TAAA-GGA-GAA----CA-------AC---T-TTTAAGCAACATGGTTATCCCGCA-TCTT---A------AATGCAAG-AT-G-TATATATTTCC-CTTA--ACTG-C----A-AAGT-----TCA-TGTA-T---ATTAT--GAAC-ACTT---AATAATTGTA--CAAATTTA-A--AA------A-CA--TGGTTTTTGCCA-ATA-GTATTCTTTT---T--A-AT---AT-----AT---TTACG---ACG-ACAACATTTTTTTCN-CGTAATG-A-GGGCAAA-----TTAATA-CAAAG----TGATAGTCGTC-CACT----ATGCC--ATT-TTTACAC-ACGTTA-CACTCTTTTATTTTC-----TTTA-A-GCACA-T-TG-TTATGG-CGGTCTGTTTTTTCATTTTTCAAGA-TTGTGA-G-AAG--ATAGTCTAATTCGG--C--AATATGCCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAGTGGTC-AAT-AA-ATG-TT-TGTAAATAA-T-ACACTT-GAAGAACAATT-AATTTG-CTCA--CTAAACTTT-T-AATAAA--TA-TCTGTCAACC-TTTGTTTTAT-AA-TAGGACAGAAAATATTAG-AAGCAGCATTCTCTTG-TTCA-CAC-C-AAAT-ATATCCtaac
gi|5 : ATATCT--TTAT-GCTTTT-AAAAGACC-TACATTCTA----GTA-CATTTATAT--A--ACAATATGCATA-A-T--ACATA-ACAAAAATG-CAT----TGTAT--GGTGGTGTACAAATT---ATA-AT----A--TAAAAGGAAGAA----CA-------AC---T-TT-AAACAAGATGATTATCCCGCAATCTT---A------AATGCAAG-AT-G-TACATATTTCC-CTAA--ACTA-C----A-AAGT-----TCA-TGTAATT--ATTAT--GAAC-ACTT---GATAATTGTA--CAAATTTA-A--AA------AACA-ATGGGTTTTGCCA-ATA-GTA--CTTTT---T--G-A----AT-----AT---TTACG---ACG-A-AG------TTCCT-CGTAATG-A-GG-CAAA-----TGAATA-TAAAG----TGATACTCGTC-CTCT----ATGTC--ATT-TTTACAT-AATTTA-CACAC----ATTT-C-----TTTA-A-GTATATT-TG-TTATGA-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG--ATAGCCTAATTCGG--C-TAATATGCCTTTTGATACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-TGACTGCAA-GGAAAAATGGCC-AAA-AACATG-TT-TGTAAATAA-T-ACACTTAGAA-AACAATT-AATTTG-CT-A-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC--TTG-TTTAT-AA-TAGGAAAGAAAAT-TTAG-AAGTAGCATTCTCTTG-TTCACCAC-C-AAAT-ATATCCtaaccctatctcatacaatttttcttttatgcaataggcccaatttttgctgcaattcttcaatctgtcacagctg
gi|6 : TA-CATCTCTATCAATTACAATATGCATACA-T--AAATACATAAAAATGGCAC----TGGATTTGGTGGT-TACGA-TT---AAA-GTCAGAA--TAACAG-A-GAA----CA-------CT---T-TT-AAATAAG-TGGTTATCCTGACAGCTT---A------AATGCAAGCAG-GCTTTATATTTCC-TTAATAACTG-C----A-AA-T-----TCA-TGTTAT---ATTAC--GAAC-ACTTTTTGGTAA----A---AAATTTT-A--AA------AACAACTGGTTTTTGCCA-ATATATA---TTTT---T--A-AT---AT-----AT---TTATG---ACG-A-AGC-----TTCCT-CGTAATGCG-GG-CAAA-----TTAATA-CAAAGC---TGATACTCGTC-CTCT----ATGTC--ATTGTTTACAT-AATTTA-C-CACT---ATTT----------A-A-GTATA-T-TG-TTATGG-CGGCCTGTTT---CATTTT-CAAGA-TTGTGA-G-AAGATATAGTCTAATTCGG--CTTAATATGCCTTTTG-TACATAAT-AGG-A-T-A-GGTTTACAAAGCGTAA-T-AATGCAA-GGAAAAAT-GTCGAATAAACATGATT-TGTAAATAA-T-ACACTTAGAAGAAGAAT---ATTTGCCTCAGACTAAAC-TT-G-AATAAAAATA-TCTGTCAACC-TTTGTTTT-T-AATTAGGAAAGAAAATATCAG-AAGTAGCA
gi|7 : g-TTATGG-CGGCCTGTTT---CAATTT-CAAGA-TTGTGA-G-AAG------TCTAATTCGG--C-TAATATACCTTTTG-TACATATT-AGGTA-T-A-GGTTTACAAAG-GTAA-T-ACTGCAA-GGAAAAATGGTC-ATT-AACATG-TT-TGTA---AG-T-ACACTTAGAAGAACAATT-AATTTG-CTCA-ACTAAACTTT-G-AATAAAAATA-TCCGTCAACC-TTTGTTTTAT-AA-TAGGAAA---------AG-AAGTAGCATTCTCTTG-TTCA-TAC-C-AAAT-ATATCC
gi|8 : cacaTTT-AAAAGACG-TACATCTCA----ATA-TAT---TAT--G--GCAATATGTATACA-TGTACATA-ACAAAAATGGCAT----TGTAT--GGTGGTGTACAAATT----CA-G-----A--TAAA-GGA-GAA----CA-------AC---T--------------GTTATCCCGCA-TCTTTAAA------AATGCAAG-AT-G-TATATATTTCC-CCAA--ACTG-C----A-AAGT-----TCG-TGT-AT---ATTAT--GAAC-ACTT---AATAACTGTA--CAAACTT--A--AA------AACAGATGGTTTTTGCCA-ATA-GTA--TTNCT---taaccctatctcatacaatttttcttttaagcaataggcccaatttttgctgcaattcttcaacctgtcacaactgtaatataatctgtca
gi|9 : acatatacATCTCATTATTGCGT-----AAGACC-TGCATCTTA----TCA-CACCAGTGT--T--ACTTTA-------A-T--ACATT-AGAAAGATGGCAGACAATGCAT--GGTGCTGTACAAATA---ACATGT----C--TA--------------CCTCCTTTTAC---T-TT-TAA--AGAAGGTTTTCTTGCAA-CTT---A------AATGCAAG-GC-A-TGAATAATTCT-CAAA--GTTA-C----A-AAGG-----ACT-TG-GAC---ATTTT--GAAC-ACTTTAAAATAGTTGTA--CAAATTTG-A--AA------AG-AGATGTCTTTTGCAT-GTG-GTA--CTTTT---T--ATAT---AT-----AT---TTATG---ACG-A-AG------TTTCT-TG-AATatgaacactaataactgtacaaacttaaaaacagatgtttttgccaatagtatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTACGAAATATATTCAGACTCAGTGTCATACATTGTTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCAC
Unaligned ( gi|17 ): TTTACGAAATATATTCAGACTCATGTCATACATTGTTTGTCATTGTTATGCAATGGGCTCATTCTTTGCTGCATTTTGTCATTCTATCACGGTTGTTCATAGTTCATCAAAACATTTTCTAATGATACAATGTTCACT