lowQualScore                  :                                                                               4       44    22                   4444444444444444444444444444444444444444444444444444444444           111              333333333333                    1111   1                1111                     444444444444444444444444     2222         11         55555555555             1            
lowQualScore                  :                                                                               0       22    55          6        4444444444444444444444444444444444444444444444444444444444         2 444          333 111111111111    55  5 4444      8888   3 7    4444 4    5555        777  1 8   2 555555555555555555555555     5555         22 44      88888888888  4     6    8  5  5      
lowQualScore                  :                                                                               .       ..    ..          .        ..........................................................         . ...          ... ............    ..  . ....      ....   . .    .... .    ....        ...  . .   . ........................     ....         .. ..      ...........  .     .    .  .  .      
lowQualScore                  :                                                                               0       88    22          7        3333333333333333333333333333333333333333333333333333333333         2 888          999 000000000000    33  3 7777      4444   2 1    5555 3    2222        999  9 4   1 000000000000000000000000     4444         88 22      77777777777  1     0    2  3  6      
consensus                     :                                                                      NNTTAATTCGTTCCCAC--GAAANGAAATTCGTTCCCACGAAAT--AAGA---ATTCN-TTC-G--C-ACGA-A--AAAAATCG-TTCG-TC----------CCACGAAAT-AA--AATTCGTTCC---C------A-CGG-AAAT-NAATT----TCGTTCNCGCGAAAT-AAAA----TTCGTTC--CCACGAAAT--NAA-ATTCG-T------------------T--CCCACGAAATAAAAATTCGTTCCC--ACGAAA-TAATATAA--TTCGTTCCCACGAAATNAANTTCGTT
Reference ( gi|1 )            :                                                                      AATTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAAT--AAGA---ATTCT-TTC-G--C-ACGACA--AAAAATCG-TTCGATC----------CCACGAAAT-AT--AATTCGTTCC---C------A-TGG-AAAT-TAATT----TCGTTCGTGTGAACT-AAAA----TCCGTTT--GCACGAAAT--GAA-ACTCG-T------------------A--CGTACGAAGTAGAAATTCGTTTGC--ACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|6                          :                                                                        TTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAAT--CAAA---ATTCG-TTT-G--C-ACGA-A--AGAA--CA-TTCG--T----------CCAC---AT-A---GATTTTTTCC---
gi|2                          :                                    ttatggtggctagtttaggaccaggtagatttttttttAATTTGTTCCTAC--GAAATGAAATTTGTTCCCACAAAA------------TCT----------------------ATTA-TTT--TC----------TGACGAAAT-AA--ATTTCTTTCC---C------A-C-A-AAAT-TAATT----TCTTTCCCGCCAAAA-AAAAAATCTCTGTTT--CCACGAAAT--AAA-A------------------------A--TGCACGAA-TAAAATTTCaaa
gi|16                         :                                     taatggctggcttagaacgggagaaatatttttatcaAATTCGTTCCCAC--GAAAAGAAATTGGTTCCCACAAAAT--
gi|9                          :                                                                                 taaCGCACGAAATAAAATTCGTTCCCACGAAAT----TA---ATTTTATTT-G--C-ATGAAA--TAAAATC----CGTTA----------CCACGAGAT--T--AATT
gi|3                          :                                                                acggtggctggttcaggacaggtaaaagaatAAATTCGTTCCCACGAAAT--AAAACTCATTCC-CTCAA--CAACGAC---AAAAATCG-TTC-ATCTAATTCGTTACCATGAAAT-AA--AATTCGTGTC---T------A-C-G-AAAC-TAATTTGAATCGTTCtcat
gi|7                          :                                                    acgttggctggttgggacaaatggaaggattttttaaaatataAAAT-CGTTCGCACGAAAT--GAAA---ATTCG-TTC-T--C-ACG--A--AACTATAA-TTCATTC----------CAATAAAAT-GA--AATTCGTT--------------TGA-GAAC-GAATT----TCATTtcattaa
gi|5                          :                                                            gtacggtagctgctttaggacagatgaaatatttttAATTCGTTCCCACAAAAC--GAG----ATTCT-TTC-a
gi|3                          : tacggtggatggtttaggacaggtggaagaagtttttaaaaaatatagtccacgaaataagattcgatctcgagaaataagattcgatctctcgaaatggGTTGGGACAAA-TGGAAGG---ATTTT-TT-------AAAATA--TAAAAT----TCGTTC----------CCACGAAAT-AA--AACTCATTCC---CTCAACAA-CGACAAA---AA------TCGTTCAT-----CT---AA----TTCGTTA--CCATGAAAT--AAA-ATTCG-T------------------G--TCTACGAA
gi|9                          :                                                                                             acgttggctgTCGCACGAAAT--AA-A---ATTCG-TTC-C--C-ACGA-A--ATTAAT---TTTATTT----------GCATGAAAT-AA--AATCCGTTAC---C------A-CG--AGAT-TAATT----TCATactaatttgaatcgttctcattaa
gi|5                          :                                                                            acggtggctggttcaggacaggtaaaagaaCACGAAAT--AAGA---------TTC-GATC-TCGAGA--AATAA--GATTCGATC----------TCTCGAAAT-GG--AATTCGTTCC---C------A-
gi|4                          :                                                                          tacggtggatggtttaggacaggtggaagaagtttttaaaaaatatagtcTTCG-TTC-G--C-GCGAAATGAAAATTCG-TTCA--------------CACGAAAT-A---AATTCGTTCC---A------A-C-G-ACAT-TGGTT----TCATTCGCATGAAATAAAAA----TTCGCTC--ATACGAAAT--AAA-AGTCG-T------------------caaaacgagattctttc
gi|15                         :                                                                                                              ctgttgttggtttaggacagataaaatatttttctggAAAATTG-TTC--------------CCTCGAAAT-AA--AATTTGTTCC---C------A-T-G-AAAT-TAATT----TCGTTtctc
gi|12                         :                                                                                                                                                    AAATTG-TTC--------------CCGTGAAAT-AT--AATTCGTTTC---C------A-C-G-AAAT-TTATT----TCGTTCTCATGAAAT-AAAA----TTAGTTC--CCATGA
gi|7                          :                                                                                                                                                   tAAATCG-TTCG--------------CACGAAATGAA--AATTCGTTCT---C------A-CGA-AACTATAA-T----TCATTCCAATAAAAT-GAAA----TTCGTTTGAGAACGAAttt
gi|10                         :                                                                                                                      gtacggtagctgctttaggacagatgaaatattttt-TTCGTTC----------CCACGAAAT-CA--AATTCGTTTTATAC------A-TAA-AAAT-tttcatta
gi|9                          :                                                                                                            tgtgttgcgtcggctggtgtaggataggtggtagagatatttcttttacaaATC----------GCACGAAAT-AA--AATTCGTTCC---C------A-CG--AAAT-TAATT----TTATTTGCATGAAAT-AAAA----TCCGTTA--CCACGAGAT--TAA-
gi|8                          :                                                                                                                                   acggtggctggttcaggacaggtaaaagaTT----------CCACGAAAT-ATGCAATTCGTTCC---A------ACT----AAT-GAACT----TCGTTCTTACCAAAT-TAAC----TTTGTTG--CCACAAAAT--CAA-tttcat
gi|5                          :                                                                                                                           tacggtaattggcttaggacaggtgaaatattctaatgt----------CCACGAAAT-AA--GATTCGATCT---C------G--AG-AAAT-AAGAT----TCGATCTCTCGAAAT-GGAA----TTCGTTC--CCACAAAAC--GAG-ATTCtttctt
gi|5                          :                                                                                                                                tacggtggatggtttaggacaggtggaagaagtttttaaaaaatatagtAAAT-AT--AGT------C---C------A-CG--AAAT-AAGAT----TCGATCTCGAGAAAT-AAGA----TTCGATC--TCTCGAAAT--GGA-ATTCG-T------------------T--CCCACAAAAC-GAGATTCTTTtttc
gi|10                         :                                                                                                                                            tacggtggatggtttaggacaggtggaagaagtttttaaaT-AC--AATTCGTTCC---C------A-C-G-AAAT-CAAAT----TCGTTc
gi|6                          :                                                                                                                                         tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttT--AATTTGTTCC---C------A-CG---AAT-AAAAG----TCGTTCCCACAAAATCAAAA----TTCGTTT--GCACGAAA---GAACATTCG-TCC----------------A--CATAttatacataaaaat
gi|9                          :                                                                                                                                                                           ttatggtggctagtttaggaccaggtagattttttttttG-AAAT-AAAAT----TCGTTCCCACGAAAT-TAAT----TTTATTT--GCATGAAAT--AAA-ATCCGTT------------------A--C-CACGAgattttttccaaa
gi|12                         :                                                                                                                                                                                      acggtggctggttcaggacaggtaaaagaatcgcacAATT------GTTCCCGTGAAAT-ATAA----TTCGTTT--CCACGAAAT--TTA-TTTCG-T------------------T--CTCATGAAATA-AAATTAGTTCCC--ATGAgattaatttcat
gi|4                          :                                                                                                                                                                                                                           taT----TCGTTCGCGCGAAATGAAAA----TTCGTTC--ACACGAAAT---AA-ATTCG-TTCCAACGACATTGGTTTCATTCGCATGAAATAAAAATTCGCTCAT--ACGAAA-TAAttt
gi|9                          :                                                                                                                                                                                                 ctgttgttggtttaggacagataaaatatttttctggTCGCACGAAAT-AAAA----TTCGTTC--CCACGAAAT--TAA-TTTTA-T------------------T--TGCATGAAATA-AAATCCGTTACC--ACGAGATTAATaagtcgttctc
gi|3                          :                                                                                                                                                                                                                  acggtggctggttcaggacaggtaaaagaaT-AAAA----TTCGTTC--CCACGAAAT--AAA-ACTCA-TTCCCTCA-----------A--CA-ACGA--CAAAAA-TCGTTC-------------ATCTAA--TTCGTTACCATGAAATAAAATTCGTttcat
gi|16                         :                                                                                                                                                                                                       acgttggctggttgggacaaatggaaggattttttaaaataT-AAAA----TTCGTTC--CCACGAAAA--GAA-ATTGG-T------------------T--CCCACAAAATgtctacgaaactaatttgaatcgttctcattaa
gi|10                         :                                                                                                                                                                                                                                                T-ACAA----TTCGTTC--CCACGAAAT--CAA-ATTCG-T------------------
gi|2                          :                                                                                                                                                                                                     tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAA----TTTGTTC--CTACGAAAT--GAA-ATTTG-T------------------T--CCCACAAAATCTA---TTATTTTCTGACGAA------ATAAATTTCTTTCCCACAAAATTAATTTCTTTtttatacataaaaat
gi|6                          :                                                                                                                                                                                                                taatggctggcttagaacgggagaaatatttttatcAA----TTTGTTC--CCACGAA-T--AAA-AGTCG-T------------------T--CCCACAAAATCAAAATTCGTTTGC--ACGAAA-GAACATcccgccaaaaaaaaaatctctgtttccacgaaataaaaatgcacgaataaaatttc
gi|8                          :                                                                                                                                                                                                                     ttatggtggctagtttaggaccaggtagatttttttttttGTTT--CCACGAAATATGCA-ATTCG-T------------------T--CCAACTAA-T-GAACTTCGTTCTT--ACCAAA-T----TAA-CTTTGTTGCCACAAAATCAATTTCtcgtccacatagattttttccaaa
gi|9                          :                                                                                                                                                                                                                          tacggtaattggcttaggacaggtgaaatattctaatTC--GCACGAAAT--AAA-ATTCG-T------------------T--CCCACGAAAT-TAATTTTATTTGC--ATGAAA-TAA---AA--TCCGTTACCACGAGATTAATTTCATtt
gi|16                         :                                                                                                                                                                                                                                             acggtggctggttcaggacaggtaaaagaaT--AAA-ATTCG-T------------------T--CCCACGAAA-AGAAATTGGTTCCC--ACAAAA-T
gi|7                          :                                                                                                                                                                                                                                                                                A-AATCG-T------------------T--CGCACGAAATGAAAATTCGTTCTC--ACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTT
gi|4                          :                                                                                                                                                                                                                                                gtacggtagctgctttaggacagatgaaatatttttTCG-T------------------T--CGCGCGAAATGAAAATTCGTTCAC--ACGAAA-TAA-A-----TTCGTTCCAACGACATtgagaacgaatttcatta
gi|12                         :                                                                                                                                                                                                                                                                                     ctgttgttggtttaggacagataaaatatttttctggtAATTCGTTTCC--ACGAAA-T-TTAT----TTCGTTCTCATGAAATAAAATTAGTTtggtttcattcgcatgaaataaaaattcgctcatacgaaataaaagtcgttctc
gi|8                          :                                                                                                                                                                                                                                                                                                           taaattgttcccgtgaaatatGTTTCC--ACGAAA-T-ATGCAA--TTCGTTCCAACTA-ATGAACTTCGTTcccatgattt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TATTATGGTGGTTGGTTTAGGACAGGCTGAAGATTTTTTAAAAAGTCGTTCCCATAAAATAAAATTTGTTTCCAAGAAATAAAATAG
Unaligned ( gi|13 ): CAATGTTCGTGTGGCTAGTGGTGGACAAGTGGAAGAAAAACAGTTTTTAAAAATTCGCTTTCCCGCGAAATAAA
Unaligned ( gi|14 ): CTACGGTGGCTGGTTTAGGACAGGTTTAATTCGTTCCCACAAATTTCAAATGCGTACCCAC
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT






Alignments
lowQualScore                  :                                                       11   111                     1               1         2222222                           22                      1111                                                                            111                              
lowQualScore                  :                                              77       88   222     0        2    4 2     1         0  22 3   1111111          888   5          88    1  77       1     0000       7777               44 1          77        7        66           6   222  99                1  1      
lowQualScore                  :                                              ..       ..   ...     .        .    . .     .         .  .. .   .......          ...   .          ..    .  ..       .     ....       ....               .. .          ..        .        ..           .   ...  ..                .  .      
lowQualScore                  :                                              33       33   000     2        0    0 0     0         0  00 2   2222222          111   0          77    0  66       0     6666       7777               66 0          22        2        99           7   222  22                0  0      
consensus                     :                                      NNTTAATTTGTTCCCAC--GAAAANAAATTCGTTCCCACAAAATNAGAATTCGTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAAT-TCGTTCCCACG-AAATNAAN-TTCGTTCNCGCGA----AATAAAA----TTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTCG--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATNAAATTCGTT
Reference ( family-2727 )     :                                      NNTTAATTCGTTCCCAC--GAAANGAAATTCGTTCCCACGAAATAAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAAT-TCGTTCCCACGGAAATNAAT-TTCGTTCNCGCGA----AATAAAA----TTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTCG--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATNAANTTCGTT
gi|1                          :                                        TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAAT-TCGTTCCCATGGAAATTAAT-TTCGTTCGTGTGA----ACTAAAA----TCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTCG--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|10                         :                                                                                                                                                                                                                                                      aaTACAA--TTCGTTCCCACGAAATCAAATTCGTT
gi|10                         :                                                                                                                                tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAA----TTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11                         :                                                                                                                                 tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAA----GTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12                         :                                                                                                             tattatggtggttggtttaggacaggctgaagattttttaTAAAT-T--GTTCCCGTGA----AATATAA----TTCGTTTCCACGAAA--TTTATTTCGTTCT-CATGAAAT-AAAATTAG--TTCCCATGAtag
gi|13                         :                                                                                                                                                                                                                             TAAAAATTCGCTTTCCCGCGAAA-TAAttt
gi|14                         :                                                                                                                                  caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAA----TTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15                         :                                                                                                                                                                                                    ctacggtggctggtttaggacaggtttAAAATT-G--TTCCCTCGAAA-TAA---AA--TTTGTTCCCATGAAATTAATTTCGTT
gi|16                         :                                          AATTCGTTCCCAC--GAAAAGAAATTGGTTCCCACAAAAT
gi|2                          :                                                            taaAAATTTGTTCCTACGAAATGA-AATTTGTTCCCACAA-AATCTATTATTT--TCTGACGAAATA--AATT-TCTTTCCCAC-AAAATTAAT-TTCTTTCCCGCCA----AAAAAAAAATCTCTGTTTCCACGAAA--TAAAAAT-G-----CACG-AATAAAATTTC
gi|3                          :                                                                                        taatggctggcttagaacgggagaaatatttttatcATA--AAAT-TCGTTCCCAC-GAAATAAAA-CTCATTCCCTCAACAACGACAAAA----ATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTCG--TGTCTACGAAACTAATTTGA--ATCGTTCTCA
gi|4                          :                                                                                            acgttggctggttgggacaaatggaaggattttttaaaatT-TCGTTCGCGCG-AAATGAAAATTCGTTCACACGA----AATAAA-----TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTCG--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5                          :                                                                                         ctgttgttggtttaggacagataaaatatttttctggA--AAATATAGT--CCACG-AAATAAGA-TTCGATCTCGAGA----AATAAGA----TTCGATCTCTCGAAA--TGGAATTCGTTCC-CACAAAAC-GAGATTCT--TTC
gi|6                          : tacggtggatggtttaggacaggtggaagaagtttttaaTTAATTTGTTCCCAC--GAA-TAAAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATT-T--TTTCCA
gi|7                          :                                                                                                                                                                ttatggtggctagtttaggaccaggtagattttttttt--TTAAAT-CGTTCG-CACGAAATGAAAATTCG--TTCTCACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTTaa
gi|8                          :                                                                                gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAAT-TCGTTCCAACT--AATGAAC-TTCGTTCTTACCA----AATTAAC----TTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9                          :                                                            tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAAT-TCGTTCCCACG-AAATTAAT-TTTATTTGCATGA----AATAAAA----TCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT






Alignments
lowQualScore                  :                                                     11     1                                     1            2222                                                  1111                                                      111                  111                              
lowQualScore                  :                                             6       88     4                   1       2         0        44  3333          777              4    1  55       1 6   0000                  2   55 1  0       66   0            111 99   1       6   222  77            0   1         
lowQualScore                  :                                             .       ..     .                   .       .         .        ..  ....          ...              .    .  ..       . .   ....                  .   .. .  .       ..   .            ... ..   .       .   ...  ..            .   .         
lowQualScore                  :                                             7       33     0                   0       5         0        22  5555          222              4    0  44       0 2   6666                  6   00 0  5       44   7            777 22   0       7   333  99            8   0         
consensus                     :                                    NNTTAATTTGTTCCCAC--GAAAA-AAATTCGTTCCCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNCACGA----AATAAAATTCGTTCCCACGAAA--TCAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATGAAATTCGTT
Reference ( family-2727 )     :                                    NNTTAATTTGTTCCCAC--GAAAANAAATTCGTTCCCACAAAATNAGAATTCGTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAN-TTCGTTCNCGCGA----AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATNAAATTCGTT
gi|1                          :                                      TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGTGTGA----ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|10                         :                                                                                                                                                                                                                                                  aaTACAA--TTCGTTCCCACGAAATCAAATTCGTT
gi|10                         :                                                                                                                             tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11                         :                                                                                                                              tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAAGTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12                         :                                                              tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTCATGA----AATAAAATTAGTTCCCATGAtag
gi|13                         :                                                                                                                                                                                                                     tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14                         :                                                                                                                               caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15                         :                                                                          ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16                         :                                        AATTCGTTCCCAC--GAAAAGAAATTGGTTCCCACAAAAT
gi|2                          :                                                                                                                                                                                                                                                    taaAA--TTTGTTCCTACGAAATGAAATTTGTT
gi|2                          :                                                                           taatggctggcttagaacgggagaaatatttttatca-TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTGACGA----AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A-AA--T--G----CACG-AATAAAATTcccacaaaatctattattttctgacgaaataaatttctttcccacaaaattaatttctttcccgccaaaaaaaaaatctctgtttccacgaaataaaaatgcacgaataaaatttc
gi|3                          :                                                                              taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTTGA--ATCGTTCTCAtc
gi|4                          :                                                                                          acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCACACGA----AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5                          :                                                             ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTCTCGA----AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6                          : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7                          :                                                                                                                                                         ttatggtggctagtttaggaccaggtagattttttttt--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTTaa
gi|8                          :                                                                              gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTTACCA----AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9                          :                                                          tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGCATGA----AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT






Alignments
lowQualScore                  :                                             1       22     2                                     1            2222                                                                                                                  111111               222                11             
lowQualScore                  :                                             5       77   4 0   3      2        1       1         0        44  3333          777              4    1  55       1 777    4    88888              0   44 77          44   0    1       000000           5 0 666  99      888   33             
lowQualScore                  :                                             .       ..   . .   .      .        .       .         .        ..  ....          ...              .    .  ..       . ...    .    .....              .   .. ..          ..   .    .       ......           . . ...  ..      ...   ..             
lowQualScore                  :                                             0       55   0 0   0      5        0       0         0        22  5555          222              4    0  88       0 888    4    33333              7   22 66          77   1    0       111111           7 1 000  22      777   22             
consensus                     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATA-----AAATTCGTTCCCACGAAA--T-NAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGA-AATGAAATTCGTT
Reference ( family-2727 )     :                                    NNTTAATTTGTTCCCAC--GAAAA-AAATTCGTTCCCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATA-----AAATTCGTTCCCACGAAA--T-CAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGA-AATGAAATTCGTT
gi|1                          :                                      TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTA-----AAATCCGTTTGCACGAAA--T-GAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGA-TATGAAATTCGTT
gi|10                         :                                                                                                                                                                         aaTA-----CAATTCGTTCCCACGAAA--T-CAAATTCGTTTTATAC---ATAAAAAT
gi|11                         :                                                                                                                              tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttA-----AAAGTCGTTCCCATAAAA--T-AAAATTTGTTTC-CAAGAAATAAAA
gi|12                         :                                                              tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATA-----AAATTAGTTCCCATGAtag
gi|13                         :                                                                                                                                                                                                                           tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14                         :                                                                                                                                    caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTT-CAAATGCGTACC-CACa
gi|15                         :                                                                          ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16                         :                                                                                                                                                                           TA-----AAATTCGTTCCCACGAAA--A-GAAATTGGTTCC-CACAAAAT
gi|2                          :                                                                                                                -TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATA-----AATTTCTTTCCCACAAAA--T-TAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A-AA--T--G----CACG--AATAAAATT
gi|3                          :                                                                              taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACA-----AAAATCGTTC-------A--T-CTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTTGA--ATCGTTCTCAtc
gi|4                          :                                                                                          acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATA-----AA-TTCGTTCCAACGACA--T-TGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5                          :                                                             ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATG-----GAATTCGTTCCCACAAAA--C-GAGATTCTTTC
gi|6                          : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7                          :                                                                                                                           ttatggtggctagtttaggaccaggtagattttttttt---ATGA-AATATTTTTAAAT-CGTTCGCACGAAA--TGAAAATTCGTTCT-CACGAAACTATAATTC---A--TTCCAATAAAA-TGA---AA--TTCGTT----TGAGAACGAATTTCATTaa
gi|7                          :                                                                                                                                                                             gtacggtagctgctttaggacag--T-TAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TATAA--TTCATTCCAATAA-AATGAAATTCGTTa
gi|8                          :                                                                              gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATT-----AACTTTGTTGCCACAAAA--T-CAATTTCtgagaacgaatttcatta
gi|9                          :                                                          tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATA-----AAATCCGTTACCACGAGA--T-TAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT






Alignments
lowQualScore                  :                                             1       11     1                                     1            2222                                                                                                            111                  1111                               
lowQualScore                  :                                             5       88   1 5   1      1        1       1         0        44  3333          777              4    1  55       1 888    5                  1   44 1          44   1            111 99   1       5   6666  999      1    0    8         
lowQualScore                  :                                             .       ..   . .   .      .        .       .         .        ..  ....          ...              .    .  ..       . ...    .                  .   .. .          ..   .            ... ..   .       .   ....  ...      .    .    .         
lowQualScore                  :                                             0       55   0 0   0      0        0       0         0        22  5555          222              4    0  88       0 888    0                  6   66 0          66   4            777 22   0       7   1111  777      7    8    0         
consensus                     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
Reference ( family-2727 )     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
gi|1                          :                                      TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATAT-AAACTTTGTTCCAACGATATG-AAATTCGTT
gi|10                         :                                                                                                                                                                                                                                                  aaTAC-AA--TTCGTTCCCACGAAATC-AAATTCGTT
gi|10                         :                                                                                                                             tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11                         :                                                                                                                              tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAAGTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12                         :                                                              tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATAAAATTAGTTCCCATGAtag
gi|13                         :                                                                                                                                                                                                                     tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14                         :                                                                                                                               caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15                         :                                                                          ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16                         :                                                                                                                                                                           TAAAATTCGTTCCCACGAAA--AGAAATTGGTTCC-CACAAAAT
gi|2                          :                                                                                                                -TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A--AA--T--G----CACG-AATA-AAATT
gi|3                          :                                                                              taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTT-GA--ATCGTTCTCAtc
gi|4                          :                                                                                          acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA----AA--GTCGTTCTCttaa
gi|5                          :                                                             ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6                          : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7                          :                                                                                                                                                                                                    ttatggtggctagtttaggaccaggtagatttttttttATGAAA-TATTTTTAA--ATCGTTCGCACGAAATGAAAATTCGTTaa
gi|7                          :                                                                                                                                                                        gtacggtagctgctttaggacag--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TAT-AA--TTCATTCCAATAAAATG-AAATTCGTTctcacgaaactataattcattccaataaaatgaaattcgtttgagaacgaatttcatta
gi|8                          :                                                                              gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9                          :                                                          tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT






Alignments
lowQualScore                  :                                             1       11     1                                     1            2222                                                                                                            111                  1111                               
lowQualScore                  :                                             5       88   1 5   1      1        1       1         0        44  3333          777              4    1  55       1 888    5                  1   44 1          44   1            111 99   1       5   6666  999      1    0    8         
lowQualScore                  :                                             .       ..   . .   .      .        .       .         .        ..  ....          ...              .    .  ..       . ...    .                  .   .. .          ..   .            ... ..   .       .   ....  ...      .    .    .         
lowQualScore                  :                                             0       55   0 0   0      0        0       0         0        22  5555          222              4    0  88       0 888    0                  6   66 0          66   4            777 22   0       7   1111  777      7    8    0         
consensus                     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
Reference ( family-2727 )     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
gi|1                          :                                      TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATAT-AAACTTTGTTCCAACGATATG-AAATTCGTT
gi|10                         :                                                                                                                                                                                                                                                  aaTAC-AA--TTCGTTCCCACGAAATC-AAATTCGTT
gi|10                         :                                                                                                                             tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11                         :                                                                                                                              tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAAGTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12                         :                                                              tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATAAAATTAGTTCCCATGAtag
gi|13                         :                                                                                                                                                                                                                     tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14                         :                                                                                                                               caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15                         :                                                                          ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16                         :                                                                                                                                                                           TAAAATTCGTTCCCACGAAA--AGAAATTGGTTCC-CACAAAAT
gi|2                          :                                                                                                                -TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A--AA--T--G----CACG-AATA-AAATT
gi|3                          :                                                                              taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTT-GA--ATCGTTCTCAtc
gi|4                          :                                                                                          acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA----AA--GTCGTTCTCttaa
gi|5                          :                                                             ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6                          : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7                          :                                                                                                                                                                                                    ttatggtggctagtttaggaccaggtagatttttttttATGAAA-TATTTTTAA--ATCGTTCGCACGAAATGAAAATTCGTTaa
gi|7                          :                                                                                                                                                                        gtacggtagctgctttaggacag--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TAT-AA--TTCATTCCAATAAAATG-AAATTCGTTctcacgaaactataattcattccaataaaatgaaattcgtttgagaacgaatttcatta
gi|8                          :                                                                              gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9                          :                                                          tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATAAAATCCGTTACCACGAGA--TTAATTTCATtt


blockSeqs                     :                                             G       .    T .   G      C        C       G         .        GT  GTC           TGC              .    T  AA       T TCA    C                  G   TT C          TA   G            TCT CT   C       C   TTTT  T        C         A
blockSeqs                     :                                                                                                  .        GT  GT            T                .    T  T        T .      .                  A   .  A          C    A            .   .    C       .   TAC   T        T         .
blockSeqs                     :                                                                                                  .        AT  .             A                .    C  T        C .      .                  G   .  C          C    C            .   .    C       .   TTT   A        T         .
blockSeqs                     :                                                                                                           G   .             A                .    A  T        A .      .                  G   .  G          C    G            .   .    A       .   TAT   G        G         .
blockSeqs                     :                                                                                                           .   .             A                .    G  A        T .      .                  A   .  T          C    G            .   .    T       .   A     A        C          
blockSeqs                     :                                                                                                                             A                .    A  A        T .      .                  G   .  C          C    G                             .   .     T        .          
blockSeqs                     :                                                                                                                             G                .    G  C        G .      .                  A   .  T          G    .                                                           
blockSeqs                     :                                                                                                                             A                .    T  T                                    A   .  G          G                                                                
blockSeqs                     :                                                                                                                                                                                           G   .  T                                                                           
blockSeqs                     :                                                                                                                                                                                           .   .  C                                                                           
blockSeqs                     :                                                                                                                                                                                           .   .  T                                                                           


blockSeqCons                  :                                                                                                               ****                                                                                                                                       N**
originalCons                  :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
finalCons                     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTC----CCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AAN--TCGTTCCCACGAAATG-AAATTCGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT






Alignments
lowQualScore                  :                                             1       11     1                                                   1111                                                                                                            111                  111  111                         
lowQualScore                  :                                             5       88   1 5   1      1        1       1         8     55 3    5555          555              4    1  55       1 888    5                  1   55 1  0       66   3    0       111 99   1       6   777  222 3 0  1    7             
lowQualScore                  :                                             .       ..   . .   .      .        .       .         .     .. .    ....          ...              .    .  ..       . ...    .                  .   .. .  .       ..   .    .       ... ..   .       .   ...  ... . .  .    .             
lowQualScore                  :                                             0       55   0 0   0      0        0       0         0     44 7    6666          666              0    0  88       0 888    0                  2   00 0  5       44   0    1       777 22   0       7   000  000 2 8  4    3             
consensus                     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAA-ATCGTTC----CCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TCAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--NTCGTTCCCACGAAATGAAATTCGTT
Reference ( family-2727 )     :                                    NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAA-ATCGTTC----CCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--NTCGTTCCCACGAAATGAAATTCGTT
gi|1                          :                                      TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAA-ATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|10                         :                                                                                                                                                                          aaTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAAT
gi|11                         :                                                    tgtgttgcgtcggctggtgtaggataggtggtagagatatttcttt-AAAAA-GTCGTTC----CCATAAAATA--AAATTTGTTTCCAAG-AAATAAA
gi|12                         :                                                               tattatggtggttggtttaggacaggctgaagattttttAA-ATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATAAAATTAGTTCCCATGAatag
gi|13                         :                                                                                                                                                                                                                      tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14                         :                                                                                                                                caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15                         :                                                                          ctacggtggctggtttaggacaggtttAAA-ATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16                         :                                                                                                                                                                            TAAAATTCGTTCCCACGAAA--AGAAATTGGTTCC-CACAAAAT
gi|2                          :                                                                                                     AAA-TTTGTTC----CTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA---AA--AT-G----CACG-AATAAAATT
gi|3                          :                                                                                       taatggctggcttagaacgggagaaatatttttatcATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTTGA--ATCGTTCTCAtc
gi|4                          :                                                                                           acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5                          :                                                            ctgttgttggtttaggacagataaaatatttttctggA-AAAAATATAGT------CCACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6                          : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA---CATTCGT--CCAC---ATA--GATTT--TTTCCA
gi|7                          :                                                                                                                                                          ttatggtggctagtttaggaccaggtagattttttttt--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTTaa
gi|8                          :                                                                     gtacggtagctgctttaggacagatgaaatatttA-AT-GTTT----CCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9                          :                                                               tacggtaattggcttaggacaggtgaaatattctA-AAAGA-ATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT