lowQualScore : 4 44 22 4444444444444444444444444444444444444444444444444444444444 111 333333333333 1111 1 1111 444444444444444444444444 2222 11 55555555555 1
lowQualScore : 0 22 55 6 4444444444444444444444444444444444444444444444444444444444 2 444 333 111111111111 55 5 4444 8888 3 7 4444 4 5555 777 1 8 2 555555555555555555555555 5555 22 44 88888888888 4 6 8 5 5
lowQualScore : . .. .. . .......................................................... . ... ... ............ .. . .... .... . . .... . .... ... . . . ........................ .... .. .. ........... . . . . .
lowQualScore : 0 88 22 7 3333333333333333333333333333333333333333333333333333333333 2 888 999 000000000000 33 3 7777 4444 2 1 5555 3 2222 999 9 4 1 000000000000000000000000 4444 88 22 77777777777 1 0 2 3 6
consensus : NNTTAATTCGTTCCCAC--GAAANGAAATTCGTTCCCACGAAAT--AAGA---ATTCN-TTC-G--C-ACGA-A--AAAAATCG-TTCG-TC----------CCACGAAAT-AA--AATTCGTTCC---C------A-CGG-AAAT-NAATT----TCGTTCNCGCGAAAT-AAAA----TTCGTTC--CCACGAAAT--NAA-ATTCG-T------------------T--CCCACGAAATAAAAATTCGTTCCC--ACGAAA-TAATATAA--TTCGTTCCCACGAAATNAANTTCGTT
Reference ( gi|1 ) : AATTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAAT--AAGA---ATTCT-TTC-G--C-ACGACA--AAAAATCG-TTCGATC----------CCACGAAAT-AT--AATTCGTTCC---C------A-TGG-AAAT-TAATT----TCGTTCGTGTGAACT-AAAA----TCCGTTT--GCACGAAAT--GAA-ACTCG-T------------------A--CGTACGAAGTAGAAATTCGTTTGC--ACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|6 : TTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAAT--CAAA---ATTCG-TTT-G--C-ACGA-A--AGAA--CA-TTCG--T----------CCAC---AT-A---GATTTTTTCC---
gi|2 : ttatggtggctagtttaggaccaggtagatttttttttAATTTGTTCCTAC--GAAATGAAATTTGTTCCCACAAAA------------TCT----------------------ATTA-TTT--TC----------TGACGAAAT-AA--ATTTCTTTCC---C------A-C-A-AAAT-TAATT----TCTTTCCCGCCAAAA-AAAAAATCTCTGTTT--CCACGAAAT--AAA-A------------------------A--TGCACGAA-TAAAATTTCaaa
gi|16 : taatggctggcttagaacgggagaaatatttttatcaAATTCGTTCCCAC--GAAAAGAAATTGGTTCCCACAAAAT--
gi|9 : taaCGCACGAAATAAAATTCGTTCCCACGAAAT----TA---ATTTTATTT-G--C-ATGAAA--TAAAATC----CGTTA----------CCACGAGAT--T--AATT
gi|3 : acggtggctggttcaggacaggtaaaagaatAAATTCGTTCCCACGAAAT--AAAACTCATTCC-CTCAA--CAACGAC---AAAAATCG-TTC-ATCTAATTCGTTACCATGAAAT-AA--AATTCGTGTC---T------A-C-G-AAAC-TAATTTGAATCGTTCtcat
gi|7 : acgttggctggttgggacaaatggaaggattttttaaaatataAAAT-CGTTCGCACGAAAT--GAAA---ATTCG-TTC-T--C-ACG--A--AACTATAA-TTCATTC----------CAATAAAAT-GA--AATTCGTT--------------TGA-GAAC-GAATT----TCATTtcattaa
gi|5 : gtacggtagctgctttaggacagatgaaatatttttAATTCGTTCCCACAAAAC--GAG----ATTCT-TTC-a
gi|3 : tacggtggatggtttaggacaggtggaagaagtttttaaaaaatatagtccacgaaataagattcgatctcgagaaataagattcgatctctcgaaatggGTTGGGACAAA-TGGAAGG---ATTTT-TT-------AAAATA--TAAAAT----TCGTTC----------CCACGAAAT-AA--AACTCATTCC---CTCAACAA-CGACAAA---AA------TCGTTCAT-----CT---AA----TTCGTTA--CCATGAAAT--AAA-ATTCG-T------------------G--TCTACGAA
gi|9 : acgttggctgTCGCACGAAAT--AA-A---ATTCG-TTC-C--C-ACGA-A--ATTAAT---TTTATTT----------GCATGAAAT-AA--AATCCGTTAC---C------A-CG--AGAT-TAATT----TCATactaatttgaatcgttctcattaa
gi|5 : acggtggctggttcaggacaggtaaaagaaCACGAAAT--AAGA---------TTC-GATC-TCGAGA--AATAA--GATTCGATC----------TCTCGAAAT-GG--AATTCGTTCC---C------A-
gi|4 : tacggtggatggtttaggacaggtggaagaagtttttaaaaaatatagtcTTCG-TTC-G--C-GCGAAATGAAAATTCG-TTCA--------------CACGAAAT-A---AATTCGTTCC---A------A-C-G-ACAT-TGGTT----TCATTCGCATGAAATAAAAA----TTCGCTC--ATACGAAAT--AAA-AGTCG-T------------------caaaacgagattctttc
gi|15 : ctgttgttggtttaggacagataaaatatttttctggAAAATTG-TTC--------------CCTCGAAAT-AA--AATTTGTTCC---C------A-T-G-AAAT-TAATT----TCGTTtctc
gi|12 : AAATTG-TTC--------------CCGTGAAAT-AT--AATTCGTTTC---C------A-C-G-AAAT-TTATT----TCGTTCTCATGAAAT-AAAA----TTAGTTC--CCATGA
gi|7 : tAAATCG-TTCG--------------CACGAAATGAA--AATTCGTTCT---C------A-CGA-AACTATAA-T----TCATTCCAATAAAAT-GAAA----TTCGTTTGAGAACGAAttt
gi|10 : gtacggtagctgctttaggacagatgaaatattttt-TTCGTTC----------CCACGAAAT-CA--AATTCGTTTTATAC------A-TAA-AAAT-tttcatta
gi|9 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttcttttacaaATC----------GCACGAAAT-AA--AATTCGTTCC---C------A-CG--AAAT-TAATT----TTATTTGCATGAAAT-AAAA----TCCGTTA--CCACGAGAT--TAA-
gi|8 : acggtggctggttcaggacaggtaaaagaTT----------CCACGAAAT-ATGCAATTCGTTCC---A------ACT----AAT-GAACT----TCGTTCTTACCAAAT-TAAC----TTTGTTG--CCACAAAAT--CAA-tttcat
gi|5 : tacggtaattggcttaggacaggtgaaatattctaatgt----------CCACGAAAT-AA--GATTCGATCT---C------G--AG-AAAT-AAGAT----TCGATCTCTCGAAAT-GGAA----TTCGTTC--CCACAAAAC--GAG-ATTCtttctt
gi|5 : tacggtggatggtttaggacaggtggaagaagtttttaaaaaatatagtAAAT-AT--AGT------C---C------A-CG--AAAT-AAGAT----TCGATCTCGAGAAAT-AAGA----TTCGATC--TCTCGAAAT--GGA-ATTCG-T------------------T--CCCACAAAAC-GAGATTCTTTtttc
gi|10 : tacggtggatggtttaggacaggtggaagaagtttttaaaT-AC--AATTCGTTCC---C------A-C-G-AAAT-CAAAT----TCGTTc
gi|6 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttT--AATTTGTTCC---C------A-CG---AAT-AAAAG----TCGTTCCCACAAAATCAAAA----TTCGTTT--GCACGAAA---GAACATTCG-TCC----------------A--CATAttatacataaaaat
gi|9 : ttatggtggctagtttaggaccaggtagattttttttttG-AAAT-AAAAT----TCGTTCCCACGAAAT-TAAT----TTTATTT--GCATGAAAT--AAA-ATCCGTT------------------A--C-CACGAgattttttccaaa
gi|12 : acggtggctggttcaggacaggtaaaagaatcgcacAATT------GTTCCCGTGAAAT-ATAA----TTCGTTT--CCACGAAAT--TTA-TTTCG-T------------------T--CTCATGAAATA-AAATTAGTTCCC--ATGAgattaatttcat
gi|4 : taT----TCGTTCGCGCGAAATGAAAA----TTCGTTC--ACACGAAAT---AA-ATTCG-TTCCAACGACATTGGTTTCATTCGCATGAAATAAAAATTCGCTCAT--ACGAAA-TAAttt
gi|9 : ctgttgttggtttaggacagataaaatatttttctggTCGCACGAAAT-AAAA----TTCGTTC--CCACGAAAT--TAA-TTTTA-T------------------T--TGCATGAAATA-AAATCCGTTACC--ACGAGATTAATaagtcgttctc
gi|3 : acggtggctggttcaggacaggtaaaagaaT-AAAA----TTCGTTC--CCACGAAAT--AAA-ACTCA-TTCCCTCA-----------A--CA-ACGA--CAAAAA-TCGTTC-------------ATCTAA--TTCGTTACCATGAAATAAAATTCGTttcat
gi|16 : acgttggctggttgggacaaatggaaggattttttaaaataT-AAAA----TTCGTTC--CCACGAAAA--GAA-ATTGG-T------------------T--CCCACAAAATgtctacgaaactaatttgaatcgttctcattaa
gi|10 : T-ACAA----TTCGTTC--CCACGAAAT--CAA-ATTCG-T------------------
gi|2 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAA----TTTGTTC--CTACGAAAT--GAA-ATTTG-T------------------T--CCCACAAAATCTA---TTATTTTCTGACGAA------ATAAATTTCTTTCCCACAAAATTAATTTCTTTtttatacataaaaat
gi|6 : taatggctggcttagaacgggagaaatatttttatcAA----TTTGTTC--CCACGAA-T--AAA-AGTCG-T------------------T--CCCACAAAATCAAAATTCGTTTGC--ACGAAA-GAACATcccgccaaaaaaaaaatctctgtttccacgaaataaaaatgcacgaataaaatttc
gi|8 : ttatggtggctagtttaggaccaggtagatttttttttttGTTT--CCACGAAATATGCA-ATTCG-T------------------T--CCAACTAA-T-GAACTTCGTTCTT--ACCAAA-T----TAA-CTTTGTTGCCACAAAATCAATTTCtcgtccacatagattttttccaaa
gi|9 : tacggtaattggcttaggacaggtgaaatattctaatTC--GCACGAAAT--AAA-ATTCG-T------------------T--CCCACGAAAT-TAATTTTATTTGC--ATGAAA-TAA---AA--TCCGTTACCACGAGATTAATTTCATtt
gi|16 : acggtggctggttcaggacaggtaaaagaaT--AAA-ATTCG-T------------------T--CCCACGAAA-AGAAATTGGTTCCC--ACAAAA-T
gi|7 : A-AATCG-T------------------T--CGCACGAAATGAAAATTCGTTCTC--ACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTT
gi|4 : gtacggtagctgctttaggacagatgaaatatttttTCG-T------------------T--CGCGCGAAATGAAAATTCGTTCAC--ACGAAA-TAA-A-----TTCGTTCCAACGACATtgagaacgaatttcatta
gi|12 : ctgttgttggtttaggacagataaaatatttttctggtAATTCGTTTCC--ACGAAA-T-TTAT----TTCGTTCTCATGAAATAAAATTAGTTtggtttcattcgcatgaaataaaaattcgctcatacgaaataaaagtcgttctc
gi|8 : taaattgttcccgtgaaatatGTTTCC--ACGAAA-T-ATGCAA--TTCGTTCCAACTA-ATGAACTTCGTTcccatgattt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TATTATGGTGGTTGGTTTAGGACAGGCTGAAGATTTTTTAAAAAGTCGTTCCCATAAAATAAAATTTGTTTCCAAGAAATAAAATAG
Unaligned ( gi|13 ): CAATGTTCGTGTGGCTAGTGGTGGACAAGTGGAAGAAAAACAGTTTTTAAAAATTCGCTTTCCCGCGAAATAAA
Unaligned ( gi|14 ): CTACGGTGGCTGGTTTAGGACAGGTTTAATTCGTTCCCACAAATTTCAAATGCGTACCCAC
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT
Alignments
lowQualScore : 11 111 1 1 2222222 22 1111 111
lowQualScore : 77 88 222 0 2 4 2 1 0 22 3 1111111 888 5 88 1 77 1 0000 7777 44 1 77 7 66 6 222 99 1 1
lowQualScore : .. .. ... . . . . . . .. . ....... ... . .. . .. . .... .... .. . .. . .. . ... .. . .
lowQualScore : 33 33 000 2 0 0 0 0 0 00 2 2222222 111 0 77 0 66 0 6666 7777 66 0 22 2 99 7 222 22 0 0
consensus : NNTTAATTTGTTCCCAC--GAAAANAAATTCGTTCCCACAAAATNAGAATTCGTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAAT-TCGTTCCCACG-AAATNAAN-TTCGTTCNCGCGA----AATAAAA----TTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTCG--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATNAAATTCGTT
Reference ( family-2727 ) : NNTTAATTCGTTCCCAC--GAAANGAAATTCGTTCCCACGAAATAAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAAT-TCGTTCCCACGGAAATNAAT-TTCGTTCNCGCGA----AATAAAA----TTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTCG--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATNAANTTCGTT
gi|1 : TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAAT-TCGTTCCCATGGAAATTAAT-TTCGTTCGTGTGA----ACTAAAA----TCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTCG--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|10 : aaTACAA--TTCGTTCCCACGAAATCAAATTCGTT
gi|10 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAA----TTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAA----GTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12 : tattatggtggttggtttaggacaggctgaagattttttaTAAAT-T--GTTCCCGTGA----AATATAA----TTCGTTTCCACGAAA--TTTATTTCGTTCT-CATGAAAT-AAAATTAG--TTCCCATGAtag
gi|13 : TAAAAATTCGCTTTCCCGCGAAA-TAAttt
gi|14 : caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAA----TTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15 : ctacggtggctggtttaggacaggtttAAAATT-G--TTCCCTCGAAA-TAA---AA--TTTGTTCCCATGAAATTAATTTCGTT
gi|16 : AATTCGTTCCCAC--GAAAAGAAATTGGTTCCCACAAAAT
gi|2 : taaAAATTTGTTCCTACGAAATGA-AATTTGTTCCCACAA-AATCTATTATTT--TCTGACGAAATA--AATT-TCTTTCCCAC-AAAATTAAT-TTCTTTCCCGCCA----AAAAAAAAATCTCTGTTTCCACGAAA--TAAAAAT-G-----CACG-AATAAAATTTC
gi|3 : taatggctggcttagaacgggagaaatatttttatcATA--AAAT-TCGTTCCCAC-GAAATAAAA-CTCATTCCCTCAACAACGACAAAA----ATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTCG--TGTCTACGAAACTAATTTGA--ATCGTTCTCA
gi|4 : acgttggctggttgggacaaatggaaggattttttaaaatT-TCGTTCGCGCG-AAATGAAAATTCGTTCACACGA----AATAAA-----TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTCG--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5 : ctgttgttggtttaggacagataaaatatttttctggA--AAATATAGT--CCACG-AAATAAGA-TTCGATCTCGAGA----AATAAGA----TTCGATCTCTCGAAA--TGGAATTCGTTCC-CACAAAAC-GAGATTCT--TTC
gi|6 : tacggtggatggtttaggacaggtggaagaagtttttaaTTAATTTGTTCCCAC--GAA-TAAAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATT-T--TTTCCA
gi|7 : ttatggtggctagtttaggaccaggtagattttttttt--TTAAAT-CGTTCG-CACGAAATGAAAATTCG--TTCTCACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTTaa
gi|8 : gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAAT-TCGTTCCAACT--AATGAAC-TTCGTTCTTACCA----AATTAAC----TTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9 : tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAAT-TCGTTCCCACG-AAATTAAT-TTTATTTGCATGA----AATAAAA----TCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT
Alignments
lowQualScore : 11 1 1 2222 1111 111 111
lowQualScore : 6 88 4 1 2 0 44 3333 777 4 1 55 1 6 0000 2 55 1 0 66 0 111 99 1 6 222 77 0 1
lowQualScore : . .. . . . . .. .... ... . . .. . . .... . .. . . .. . ... .. . . ... .. . .
lowQualScore : 7 33 0 0 5 0 22 5555 222 4 0 44 0 2 6666 6 00 0 5 44 7 777 22 0 7 333 99 8 0
consensus : NNTTAATTTGTTCCCAC--GAAAA-AAATTCGTTCCCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNCACGA----AATAAAATTCGTTCCCACGAAA--TCAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATGAAATTCGTT
Reference ( family-2727 ) : NNTTAATTTGTTCCCAC--GAAAANAAATTCGTTCCCACAAAATNAGAATTCGTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAN-TTCGTTCNCGCGA----AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGAAATNAAATTCGTT
gi|1 : TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGTGTGA----ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|10 : aaTACAA--TTCGTTCCCACGAAATCAAATTCGTT
gi|10 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAAGTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12 : tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTCATGA----AATAAAATTAGTTCCCATGAtag
gi|13 : tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14 : caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15 : ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16 : AATTCGTTCCCAC--GAAAAGAAATTGGTTCCCACAAAAT
gi|2 : taaAA--TTTGTTCCTACGAAATGAAATTTGTT
gi|2 : taatggctggcttagaacgggagaaatatttttatca-TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTGACGA----AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A-AA--T--G----CACG-AATAAAATTcccacaaaatctattattttctgacgaaataaatttctttcccacaaaattaatttctttcccgccaaaaaaaaaatctctgtttccacgaaataaaaatgcacgaataaaatttc
gi|3 : taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTTGA--ATCGTTCTCAtc
gi|4 : acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCACACGA----AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5 : ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTCTCGA----AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6 : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7 : ttatggtggctagtttaggaccaggtagattttttttt--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTTaa
gi|8 : gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTTACCA----AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9 : tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGCATGA----AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT
Alignments
lowQualScore : 1 22 2 1 2222 111111 222 11
lowQualScore : 5 77 4 0 3 2 1 1 0 44 3333 777 4 1 55 1 777 4 88888 0 44 77 44 0 1 000000 5 0 666 99 888 33
lowQualScore : . .. . . . . . . . .. .... ... . . .. . ... . ..... . .. .. .. . . ...... . . ... .. ... ..
lowQualScore : 0 55 0 0 0 5 0 0 0 22 5555 222 4 0 88 0 888 4 33333 7 22 66 77 1 0 111111 7 1 000 22 777 22
consensus : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATA-----AAATTCGTTCCCACGAAA--T-NAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGA-AATGAAATTCGTT
Reference ( family-2727 ) : NNTTAATTTGTTCCCAC--GAAAA-AAATTCGTTCCCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATA-----AAATTCGTTCCCACGAAA--T-CAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--TTCGTTCCCACGA-AATGAAATTCGTT
gi|1 : TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTA-----AAATCCGTTTGCACGAAA--T-GAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGA-TATGAAATTCGTT
gi|10 : aaTA-----CAATTCGTTCCCACGAAA--T-CAAATTCGTTTTATAC---ATAAAAAT
gi|11 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttA-----AAAGTCGTTCCCATAAAA--T-AAAATTTGTTTC-CAAGAAATAAAA
gi|12 : tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATA-----AAATTAGTTCCCATGAtag
gi|13 : tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14 : caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTT-CAAATGCGTACC-CACa
gi|15 : ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16 : TA-----AAATTCGTTCCCACGAAA--A-GAAATTGGTTCC-CACAAAAT
gi|2 : -TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATA-----AATTTCTTTCCCACAAAA--T-TAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A-AA--T--G----CACG--AATAAAATT
gi|3 : taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACA-----AAAATCGTTC-------A--T-CTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTTGA--ATCGTTCTCAtc
gi|4 : acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATA-----AA-TTCGTTCCAACGACA--T-TGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5 : ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATG-----GAATTCGTTCCCACAAAA--C-GAGATTCTTTC
gi|6 : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7 : ttatggtggctagtttaggaccaggtagattttttttt---ATGA-AATATTTTTAAAT-CGTTCGCACGAAA--TGAAAATTCGTTCT-CACGAAACTATAATTC---A--TTCCAATAAAA-TGA---AA--TTCGTT----TGAGAACGAATTTCATTaa
gi|7 : gtacggtagctgctttaggacag--T-TAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TATAA--TTCATTCCAATAA-AATGAAATTCGTTa
gi|8 : gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATT-----AACTTTGTTGCCACAAAA--T-CAATTTCtgagaacgaatttcatta
gi|9 : tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATA-----AAATCCGTTACCACGAGA--T-TAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT
Alignments
lowQualScore : 1 11 1 1 2222 111 1111
lowQualScore : 5 88 1 5 1 1 1 1 0 44 3333 777 4 1 55 1 888 5 1 44 1 44 1 111 99 1 5 6666 999 1 0 8
lowQualScore : . .. . . . . . . . .. .... ... . . .. . ... . . .. . .. . ... .. . . .... ... . . .
lowQualScore : 0 55 0 0 0 0 0 0 0 22 5555 222 4 0 88 0 888 0 6 66 0 66 4 777 22 0 7 1111 777 7 8 0
consensus : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
Reference ( family-2727 ) : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
gi|1 : TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATAT-AAACTTTGTTCCAACGATATG-AAATTCGTT
gi|10 : aaTAC-AA--TTCGTTCCCACGAAATC-AAATTCGTT
gi|10 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAAGTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12 : tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATAAAATTAGTTCCCATGAtag
gi|13 : tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14 : caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15 : ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16 : TAAAATTCGTTCCCACGAAA--AGAAATTGGTTCC-CACAAAAT
gi|2 : -TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A--AA--T--G----CACG-AATA-AAATT
gi|3 : taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTT-GA--ATCGTTCTCAtc
gi|4 : acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA----AA--GTCGTTCTCttaa
gi|5 : ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6 : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7 : ttatggtggctagtttaggaccaggtagatttttttttATGAAA-TATTTTTAA--ATCGTTCGCACGAAATGAAAATTCGTTaa
gi|7 : gtacggtagctgctttaggacag--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TAT-AA--TTCATTCCAATAAAATG-AAATTCGTTctcacgaaactataattcattccaataaaatgaaattcgtttgagaacgaatttcatta
gi|8 : gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9 : tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT
Alignments
lowQualScore : 1 11 1 1 2222 111 1111
lowQualScore : 5 88 1 5 1 1 1 1 0 44 3333 777 4 1 55 1 888 5 1 44 1 44 1 111 99 1 5 6666 999 1 0 8
lowQualScore : . .. . . . . . . . .. .... ... . . .. . ... . . .. . .. . ... .. . . .... ... . . .
lowQualScore : 0 55 0 0 0 0 0 0 0 22 5555 222 4 0 88 0 888 0 6 66 0 66 4 777 22 0 7 1111 777 7 8 0
consensus : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
Reference ( family-2727 ) : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
gi|1 : TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAAATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATAT-AAACTTTGTTCCAACGATATG-AAATTCGTT
gi|10 : aaTAC-AA--TTCGTTCCCACGAAATC-AAATTCGTT
gi|10 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAATttatacataaaaat
gi|11 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttctttAAAAGTCGTTCCCATAAAA--TAAAATTTGTTTC-CAAGAAATAAAA
gi|12 : tattatggtggttggtttaggacaggctgaagattttttaAAATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATAAAATTAGTTCCCATGAtag
gi|13 : tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14 : caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15 : ctacggtggctggtttaggacaggtttAAAATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16 : TAAAATTCGTTCCCACGAAA--AGAAATTGGTTCC-CACAAAAT
gi|2 : -TCCTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA-A--AA--T--G----CACG-AATA-AAATT
gi|3 : taatggctggcttagaacgggagaaatatttttatcaaatttgtATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTT-GA--ATCGTTCTCAtc
gi|4 : acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA----AA--GTCGTTCTCttaa
gi|5 : ctgttgttggtttaggacagataaaatatttttctgg-AAAAAATA--TAG-TCC-ACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6 : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA--CATTCG-T-CCAC---ATA--GATTT--TTTCCA
gi|7 : ttatggtggctagtttaggaccaggtagatttttttttATGAAA-TATTTTTAA--ATCGTTCGCACGAAATGAAAATTCGTTaa
gi|7 : gtacggtagctgctttaggacag--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TAT-AA--TTCATTCCAATAAAATG-AAATTCGTTctcacgaaactataattcattccaataaaatgaaattcgtttgagaacgaatttcatta
gi|8 : gtacggtagctgctttaggacagatgaaatattt-TTCCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9 : tacggtaattggcttaggacaggtgaaatattctaatgtA-AAAGAATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
blockSeqs : G . T . G C C G . GT GTC TGC . T AA T TCA C G TT C TA G TCT CT C C TTTT T C A
blockSeqs : . GT GT T . T T T . . A . A C A . . C . TAC T T .
blockSeqs : . AT . A . C T C . . G . C C C . . C . TTT A T .
blockSeqs : G . A . A T A . . G . G C G . . A . TAT G G .
blockSeqs : . . A . G A T . . A . T C G . . T . A A C
blockSeqs : A . A A T . . G . C C G . . T .
blockSeqs : G . G C G . . A . T G .
blockSeqs : A . T T A . G G
blockSeqs : G . T
blockSeqs : . . C
blockSeqs : . . T
blockSeqCons : **** N**
originalCons : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTCG-TCCCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AA--TTCGTTCCCACGAAATG-AAATTCGTT
finalCons : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAAATCGTTC----CCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATAT-AAN--TCGTTCCCACGAAATG-AAATTCGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT
Alignments
lowQualScore : 1 11 1 1111 111 111 111
lowQualScore : 5 88 1 5 1 1 1 1 8 55 3 5555 555 4 1 55 1 888 5 1 55 1 0 66 3 0 111 99 1 6 777 222 3 0 1 7
lowQualScore : . .. . . . . . . . .. . .... ... . . .. . ... . . .. . . .. . . ... .. . . ... ... . . . .
lowQualScore : 0 55 0 0 0 0 0 0 0 44 7 6666 666 0 0 88 0 888 0 2 00 0 5 44 0 1 777 22 0 7 000 000 2 8 4 3
consensus : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAA-ATCGTTC----CCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TCAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--NTCGTTCCCACGAAATGAAATTCGTT
Reference ( family-2727 ) : NNTTAATTTGTTCCCACAAGAANACAAANTCGTTCNCACAAAATNAGAATTCNTTCGCACGA-AAAAA-ATCGTTC----CCACGAAATA--AAATTCGTTCCCACG-AAATNAAT-TTCGTTCNC---ACGA-AATAAAATTCGTTCCCACGAAA--TNAAATTCGTTCC-CACGAAATAAAAATTC---G--TTCCCACGAAA-TAATATAA--NTCGTTCCCACGAAATGAAATTCGTT
gi|1 : TTAATTT-TTCCCACAAGAAAACAAATTCGTTCGCACAAAATAAGAATTCTTTCGCACGACAAAAA-ATCGTTCGATCCCACGAAATA--TAATTCGTTCCCATGGAAATTAAT-TTCGTTCGT---GTGA-ACTAAAATCCGTTTGCACGAAA--TGAAACTCGTACG-TACGAAGTAGAAATTC---G--TTTGCACGAAA-TAATATAAACTTTGTTCCAACGATATGAAATTCGTT
gi|10 : aaTACAATTCGTTCCCACGAAA--TCAAATTCGTTTTATAC---ATAAAAAT
gi|11 : tgtgttgcgtcggctggtgtaggataggtggtagagatatttcttt-AAAAA-GTCGTTC----CCATAAAATA--AAATTTGTTTCCAAG-AAATAAA
gi|12 : tattatggtggttggtttaggacaggctgaagattttttAA-ATTGTTC----CCGTGAAATA--TAATTCGTTTCCACG-AAATTTAT-TTCGTTCTC---ATGA-AATAAAATTAGTTCCCATGAatag
gi|13 : tTAAAAATTC---GCTTTCCCGCGAAA-TAAttt
gi|14 : caatgttcgtgtggctagtggtggacaagtggaagaaaaacagttttAATTCGTTCCCAC-AAATTTCAAATGCGTACC-CACa
gi|15 : ctacggtggctggtttaggacaggtttAAA-ATTGTTC----CCTCGAAATA--AAATTTGTTCCCATG-AAATTAAT-TTCGTT
gi|16 : TAAAATTCGTTCCCACGAAA--AGAAATTGGTTCC-CACAAAAT
gi|2 : AAA-TTTGTTC----CTACGAAATG--AAATTTGTTCCCACA-AAATCTAT-TATTTTCTG---ACGA-AATAAATTTCTTTCCCACAAAA--TTAATTTCTTTCC-CGCCAAAAAAAAAATCTCTG--TTTCCACGAAA-TAA---AA--AT-G----CACG-AATAAAATT
gi|3 : taatggctggcttagaacgggagaaatatttttatcATA--AAATTCGTTCCCACG-AAATAAAA-CTCATTCCCTCAACAACGACAAAAATCGTTC-------A--TCTAATTCGTTAC-CATGAAAT-AAAATTC---G--TGTCTACGAAACTAATTTGA--ATCGTTCTCAtc
gi|4 : acgttggctggttgggacaaatggaaggattttttaaaatTTCGTTCGCGCG-AAATGAAAATTCGTTCAC---ACGA-AATAAA-TTCGTTCCAACGACA--TTGGTTTCATTCG-CATGAAATAAAAATTC---G--CTCATACGAAA-TAA---AA--GTCGTTCTCttaa
gi|5 : ctgttgttggtttaggacagataaaatatttttctggA-AAAAATATAGT------CCACGAAATA--AGATTCGATCTCGAG-AAATAAGA-TTCGATCTC---TCGA-AATGGAATTCGTTCCCACAAAA--CGAGATTCTTTC
gi|6 : tacggtggatggtttaggacaggtggaagaagtttttTTAATTTGTTCCCAC--GAATA-AAAGTCGTTCCCACAAAATCAAAATTCGTTTGCACGA-AAGAA---CATTCGT--CCAC---ATA--GATTT--TTTCCA
gi|7 : ttatggtggctagtttaggaccaggtagattttttttt--TTAAAT-CGTTCG-CACGAAATGAAAATTC---G--TTCTCACGAAA-C--TATAA--TTCATTCCAATAAAATGAAATTCGTTaa
gi|8 : gtacggtagctgctttaggacagatgaaatatttA-AT-GTTT----CCACGAAATATGCAATTCGTTCCAACT-AA-TGAAC-TTCGTTCTT---ACCA-AATTAACTTTGTTGCCACAAAA--TCAATTTCtgagaacgaatttcatta
gi|9 : tacggtaattggcttaggacaggtgaaatattctA-AAAGA-ATCG--------CACGAAATA--AAATTCGTTCCCACG-AAATTAAT-TTTATTTGC---ATGA-AATAAAATCCGTTACCACGAGA--TTAATTTCATtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTGACTACTTTAGTACAGGTAAAATATTTTT