lowQualScore : 6666666666666666 1 22 1 444444444444444444 222 11111111111 1111111111111111 1111111 2222 1111 1111111111
lowQualScore : 4 2 1111111111111111 8 0 8 2 8 22 3 999999999999999999 4 4 4 55 8 3 5 3 6 3 6 1 0 33 2 2 2 6666 33 44 2 555 555 2 5 4 3 3 555 44 3 3 3 3 2 44444444444 8888888888888888 2 44 888 44 888888 5555555 44 3 3333 1111 2 9999999999 1 5 55 7 3 3 55 88 55 55 3 3 3 666 66
lowQualScore : . . ................ . . . . . .. . .................. . . . .. . . . . . . . . . .. . . . .... .. .. . ... ... . . . . . ... .. . . . . . ........... ................ . .. ... .. ...... ....... .. . .... .... . .......... . . .. . . . .. .. .. .. . . . ... ..
lowQualScore : 0 5 8888888888888888 0 0 0 8 0 00 3 222222222222222222 4 0 0 55 0 6 2 6 7 3 7 7 7 99 9 9 9 6666 44 33 9 000 000 9 7 3 3 3 999 22 2 3 3 3 5 44444444444 9999999999999999 9 22 666 22 888888 4444444 55 6 0000 4444 3 9999999999 3 0 00 3 6 6 00 66 00 00 6 6 6 444 99
consensus : CAAAANCCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GC------------------CTTGAG-CT-A-CAA--TA-TA-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTT---TATTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G--------GAAA----------------A-T--GCG--A--A------GT-------AG-C-TAGG-T-AG----AATGTTTAAACC--CATATATATA-AATC--C-TTTATA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-GCATCGATAAATGC
Reference ( gi|1 ) : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTCA-TTTCAGTCCTTT-CT--TTCTTTT-GC------------------TTTGAG-CT-A-CAA--TA-TA-ATGA-AC-TGT-AAAA-GTAAAAATCTTGC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTT---TATTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAT--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G--------GAAA----------------A-T--GCG--A--A------GT-------AA-C-TAGA-T-AG----AATGTTTAAACC--CATATATATA-AATC--C-TTTATA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-ACATCGATAAATGC
gi|2 : CAAAATCCCTACTATCTATT-T-------------GTACGA-TATGTTAA-TTTTAGTTCTTT-CT--TTCTTTT-GC------------------CTTGAG-CT-A-TAA--TA-TA-ATGA-AC-TGT-GAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTT---TATTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AATCGAAAACAC-ATAG-G--------GAAA----------------A-T--GCA--A--AGTACATGT-------AG-C-TAGG-T-AG----AATGTTTAAATC--CATATATATATAA---------ATA----------CAA--ATAGGC--G-A-AG-G---TA-ACATCG
gi|4 : CAAAATCCCTACTATCTATTTG-------------GTACGA-TATGTTAAATTTTAGTTCTTT-CTCTTTCTTTTTGC------------------CTTGAG-CT-AATAA--TA-TA-ATGA-AC-TGTTGAAA-GTAAAA-TCTTACCAAA-AATG-CGATT-CATG----TTGGAA-G--TCTATAATA-TTTT---TATTTTGA---T-AC-TTAAAGTAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AA-CGAAAA-AC-ATAG-G--------GAAA----------------A-T--GCA--A--A------GTACATGTAAG-C-TAGG-T-AG----AATGTTTAAATC--
gi|8 : cCAAAAAGCCTA--ATCTAT-CT-------------GTACGACTATGTTCA-TTTCAGTCCTTTTCTGGTTCTTTTTGC------------------TTTGAGGCT-A-CAAACTA-TA-ATGACAC-TGT-AAAA-GTAAAAATCTTGC--AA-AATGCCGATTCCATT-G--TTGGAAAGGTTCTACA--A-TTTTATCT-TTTTGATTTT-AC-TTAAAATTGATGAATTAAAGA-AAAT--A-----GAG-TA-T-CCATTC-AA
gi|20 : CAAAAACCCTACTATCTATTCTTTTAGTACGCTTTGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GC------------------
gi|9 : ACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GTCGTGAAAAATCCCCATAATTCAAG-CT-G-CAA--TA-TA-AAAA-AAATGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAA--TCAACA-----------TATTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTAA-T-CCATTT-AATCGGAAAC
gi|18 : CTTTT-GC------------------CTTGAG-CT-A-CAA--TA-TA-ATGA-AC-TGC-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTT---TATTTTGA---T-AC-TTAAAATAGAT
gi|3 : AG-CTCA-CAA--TA-TA--TGA-ACGTGT-AAAAAGTAAAAATCTTGC--AA-AATG-CGATT-CATT-GACTCTGAAAG--TCTACA-TA-TTTT---TATT------------TTAAAATAG---------A-A-CAA---A--TTTAAGTTG-TATCATTT-AATCAAAAGCAT-ATAG-GT-------GAAA----------------ACT--GCC--ATTA------GT-------AG-CTTAGG-T-AG----AGTGTTTAAACC--CA-GTATATT-AATC--C-TTTATA-TCTGA--TTCCA--ATA--T--A-A-AG-A---TTGGCATCGAAAAATGC
gi|7 : tgccgtgacaaaattctcctaaaaattcatG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GT-AAAATCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--Tt
gi|6 : attcccataattcaatataaagaattatG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GT-AAAATCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--Tatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|15 : attcccataattcaatataaagaattat-CT-A-CAC--TA-TA-AAGA-AC-TGT-AAAA-GTGAAAATCTTGC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TA-CTTT---TATTTTCA---T-AC-TTAAAATACATAAAATAGA-A-CAA---A--TTatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|10 : ttgccgtgaaaaattcccaaaattcaacT-A-CAC--TA-TACAAGA-AC-TGT-AAAATGTGAAAATCTTGC--AATAATG-CGTTT-CATG-A--TTGGAAAG--TCTACA-TC-CTTT---TATTTTCA---TAAC-TTAAAATACATAAAATAGA-ATCGA---A--TTTAAATTATT-CCATTTAAATAAAAAGCAT-ATA--G--------GA
gi|16 : gaaaaaattcccaaaattcaacctA-AAGA-AC-TGT-AGAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TATTTTT---TATTTTGA---T-AC-GTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATC
gi|5 : -TGT-AAAA-GTACAAACCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TATACA-TA-TTTT---TATTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AACCGAAAACAC-ATAG-GGTAACTAAGAAAAAAGGGGGTCGGCCCCA-T--ACGGAA--A------ATGCA----AA-G-TAGC-T-AGATAGAATGTTTAAACC--C--ATATATA-AATC--C-TTTATA-T-TGA--TTCAA--ACA--T--A-A-AGCC---TT-GCATCGATAAATGC
gi|7 : --AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTT---TATTTTGA---T-ACTTTAAAATACATGAA
gi|6 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaa--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTT---TATTTTGA---T-ACTTTAAAATACATGAAtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|11 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaTG-G--TTGGGAAG--TCTACA-GA-TTTT---TATTTTCA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G--------GAAA----------------A-A--AAG--A--A------GA-------AA-tgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|12 : TG-G--TTGGGAAG--TCTACA-GA-TTTT---TATTTTCA---T-AC-T-AAAATACATGAAATAAA-A-CAAC--AAATTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G--------GAAA----------------A-A--AAG--A--A------GA-------AA-aaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|21 : A-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAA-G--------CAAA----------------A-aaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|19 : --A--CTTAAGTTA-T-CCTTTT-AATCGAAAACAT-ATA--G--------GAgaa
gi|13 : aAACACGATACCG--------GAAA---------------------GCG--A---------GT-------AA-C-TACC---------AAAGTTT---CCGGCATATAGATA-AATCCAC-TTTATACT-TGATTTTCAA--ATA--T--ACACAG-ACATCT-ACGTCGAT-AATGCttaataagggggggggaggggggtgtcggccccatacggaaaatgca
gi|11 : tcccaccatttgaaaatgcgaggttagaggttctggcaatagtatgccC-ATAC-G--------GAAA----------------A-T--GCA--A--A------GT-------AG-C-TAGGTT-AG----AATGat
gi|12 : tggttgggaagtctacagatttttattttcatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttC-ATAC-G--------GAAA----------------A-T--GCA--A--A------GT-------AG-C-TAGGTT-AG----AATG
gi|14 : tggttgggaagtctacagatttttattttcatactaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttC-ATAC-G--------GAAT----------------A-T--ACA--A--A------GT-------AG-C-TAGACT-AGG---AATGTTTAAAAC--CATAT-TATA-AATC--C-TTTATA-T-TGA--TTCAATCATT--T--A-A-AG-A---TT-G-ATCGATAAATGC
gi|7 : cataaagtataaaaaaaacggaacgggggggggggcttcggcccC-ATAC-G--------GAAA----------------A-T--GCA--A--A------GT-------AG-C-TAGG-TTAG----AA-----------------AGATA-AATC--CCTTTACA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-GCATCGATa
gi|6 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccC-ATAC-G--------GAAA----------------A-T--GCA--A--A------GT-------AG-C-TAGG-TTAG----AA-----------------AGATA-AATC--CCTTTACA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-GCATCGAT
gi|17 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccC-ATAC-G--------GATA----------------A-TTTGC---A--A------GT-------AGGC-TAG--T-AG----AATGTTT
gi|22 : caagtcttacgttatccttttaaattcagcgaaactatggaattaataagggggggggaggggggtcgtcccATA-AATC--A-CTGATA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-GCATCGATAAATG
gi|24 : --C-TTTATA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-GCATCGATAAATGC
gi|25 : --C-CTTATA-T-TGA--TTCAA--ATA--T--A-A-AG-A---TT-GCATGGATAAAT
gi|23 : --C-TTTATA-T-TGA--TTCAAG-ATA--TTAA-A-AG-A---TT-GCATCGATAAAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): GGCCCCATATGGAAAATGCAAAGTAGCCGAGGTTAGAAT
Alignments
lowQualScore : 444444444444444 11 1 444444444444444444 1 111 11 1111111 111 11111
lowQualScore : 1 888888888888888 6 6 6 88 1 222222222222222222 4 3 3 55 0 3 1 3 3 3 6 2 33 2 2 2 5555 33 33 2 444 444 2 5 1 3 3 555 33 2 3 3 3 2 00 2 2 33 5 33 888888 0000000 3 3 3 333 3 0 1 1 11111 55 7 3 3 55 88 55 3 3 3 666 3
lowQualScore : . ............... . . . .. . .................. . . . .. . . . . . . . . .. . . . .... .. .. . ... ... . . . . . ... .. . . . . . .. . . .. . .. ...... ....... . . . ... . . . . ..... .. . . . .. .. .. . . . ... .
lowQualScore : 0 000000000000000 7 7 7 33 4 111111111111111111 0 6 6 00 0 3 0 3 1 1 2 3 77 7 7 7 6666 22 44 7 777 777 7 3 7 1 1 888 99 3 1 1 1 1 11 1 4 99 6 99 222222 0000000 1 1 1 222 1 5 8 9 66666 00 3 6 6 00 66 00 6 6 6 444 6
consensus : CAAAAACCCTACTATCTATTC-------------TGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
Reference ( family-2719 ) : CAAAANCCCTACTATCTATTC-------------TGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCGA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
gi|1 : CAAAAACCCTACTATCTATTC-------------TGTACGA-TATGTTCA-TTTCAGTCCTTT-CT--TTCTTTT-GCTTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGT-AAAA-GTAAAAATCTTGC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAT--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCGA--A------GT-------AA-C-T-AGA-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-ACATCGATAAATGC
gi|10 : T-A-CAC--TAT-ACAAGA-AC-TGT-AAAATGTGAAAATCTTGC--AATAATG-CGTTT-CATG-A--TTGGAAAG--TCTACA-TC-CTTTTA---TTTTCA---TAAC-TTAAAATACATAAAATAGA-ATCGA---A--TTTAAATTATT-CCATTTAAATAAAAAGCAT-ATA--G-GA
gi|11 : gaaaaaattcccaaaattcaacctTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G-GAAAA-
gi|11 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGaaagaagaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|12 : tggttgggaagtctacagatttttattttcatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-T-AAAATACATGAAATAAA-A-CAAC--AAATTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G-GAAAA-
gi|12 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGaaagaagaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|13 : tggttgggaagtctacagatttttattttcatactaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttAACACGATACCG-GAAA-----GCGA---------GT-------AA-C-T-ACC------AAAGTTT---CCGGCATATAGATAAATCCAC-TTTATACT-TGATTTTCAA--ATAT--ACACAG-ACATCT-ACGTCGAT-AATGC
gi|14 : tcccaccatttgaaaatgcgaggttagaggttctggcaatagtatgccC-ATAC-G-GAATA-T--ACAA--A------GT-------AG-C-T-AGACT-AGGAATGTTTAAAAC--CATAT-TATAAATC--C-TTTATA-T-TGA--TTCAATCATTT--A-A-AG-A---TT-G-ATCGATAAATGCat
gi|15 : cataaagtataaaaaaaacggaacgggggggggggcttcggccc-CT-A-CAC--TAT-A-AAGA-AC-TGT-AAAA-GTGAAAATCTTGC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TA-CTTTTA---TTTTCA---T-AC-TTAAAATACATAAAATAGA-A-CAA---A--TTa
gi|16 : ttgccgtgaaaaattcccaaaattcaac-A-AAGA-AC-TGT-AGAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TATTTTTTA---TTTTGA---T-AC-GTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATC
gi|17 : C-ATAC-G-GATAA-TTTGC-A--A------GT-------AGGC-T-AG--T-AG-AATGTTT
gi|18 : caagtcttacgttatccttttaaattcagcgaaactatggaattaataagggggggggaggggggtcgtcccCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGC-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGAT
gi|19 : --A--CTTAAGTTA-T-CCTTTT-AATCGAAAACAT-ATA--G-GA
gi|2 : aCAAAATCCCTACTATCTATT--------------TGTACGA-TATGTTAA-TTTTAGTTCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-TAA--TAT-A-ATGA-AC-TGT-GAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AATCGAAAACAC-ATAG-G-GAAAA-T--GCAA--AGTACATGT-------AG-C-T-AGG-T-AG-AATGTTTAAATC--CATATATATAttaataagggggggggaggggggtgtcggccccatacggaaaatgca
gi|20 : CAAAAACCCTACTATCTATTCTTTTAGTACGCTTTGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCtaaatacaaataggcgaaggtaacatcg
gi|21 : A-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAA-G-CAAAA-
gi|22 : ATAAATC--A-CTGATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGgaa
gi|23 : --C-TTTATA-T-TGA--TTCAAG-ATATTAA-A-AG-A---TT-GCATCGATAAAT
gi|24 : --C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGCtgca
gi|25 : --C-CTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATGGATAAAT
gi|26 : C-ATAT-G-GAAAA-T--GCAA--A------GT-------AG-C-CGAGGTT-AG-AAT
gi|3 : ggccc------------------AG-CTCA-CAA--TAT-A--TGA-ACGTGT-AAAAAGTAAAAATCTTGC--AA-AATG-CGATT-CATT-GACTCTGAAAG--TCTACA-TA-TTTTTA---TTT---------------------TAAAATAGA-A-CAA---A--TTTAAGTTG-TATCATTT-AATCAAAAGCAT-ATAG-GTGAAAACT--GCCATTA------GT-------AG-CTT-AGG-T-AG-AGTGTTTAAACC--CA-GTATATTAATC--C-TTTATA-TCTGA--TTCCA--ATAT--A-A-AG-A---TTGGCATCGAAAAATGC
gi|4 : tgccgtgacaaaattctcctaaaaattcatCAAAATCCCTACTATCTATTT-------------GGTACGA-TATGTTAAATTTTAGTTCTTT-CTCTTTCTTTTTGCCTTG------------------AG-CT-AATAA--TAT-A-ATGA-AC-TGTTGAAA-GTAAAA-TCTTACCAAA-AATG-CGATT-CATG----TTGGAA-G--TCTATAATA-TTTTTA---TTTTGA---T-AC-TTAAAGTAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AA-CGAAAA-AC-ATAG-G-GAAAA-T--GCAA--A------GTACATGTAAG-C-T-AGG-T-AG-AATGTTTAAATC--t
gi|5 : c-TGT-AAAA-GTACAAACCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TATACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AACCGAAAACAC-ATAG-G-GTAAC-T--AAGA--A------
gi|5 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGA-T-AG-AATGTTTAAACC--C--ATATATAAATC--C-TTTATA-T-TGA--TTCAA--ACAT--A-A-AGCC---TT-GCATCGATAAATGCaaaagggggtcggccccatacggaaaatgcaaagtagctagatagaatgtttaaacccatatataaatcctttatattgattcaaacataaagccttgcatcgataaatgc
gi|6 : tgtaaaagtacaaaccttacaaaatgcgattcatggttggaaagtatacatatttttattttgatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaaccgaaaacacatagggtaactaagaaaaaagggggtcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|6 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|6 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-TTAG-AA-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|7 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-TTAG-AA-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|8 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccCAAAAAGCCTA--ATCTAT-C-------------TGTACGACTATGTTCA-TTTCAGTCCTTTTCTGGTTCTTTTTGCTTTG------------------AGGCT-A-CAAACTAT-A-ATGACAC-TGT-AAAA-GTAAAAATCTTGC--AA-AATGCCGATTCCATT-G--TTGGAAAGGTTCTACA--A--TTTTATCTTTTTGATTTT-AC-TTAAAATTGATGAATTAAAGA-AAAT--A-----GAG-TA-T-CCATTC-AA
gi|9 : ACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GTCGTGAAAAATCCCCATAATTCAAG-CT-G-CAA--TATAA-AAAA-AA-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAA--TCAACA--------TA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTAA-T-CCATTT-AATCGGAAAC
Alignments
lowQualScore : 4444444444444 11 1 444444444444444444 1 111 11 111 11111
lowQualScore : 1 44 4444444444444 6 6 6 88 1 222222222222222222 4 3 3 55 0 3 1 3 3 3 6 2 33 2 2 2 5555 33 33 2 444 444 2 5 1 3 3 555 33 2 3 3 3 2 00 2 4444 33 777777 8888888 2 3 3 333 3 0 1 1 11111 55 7 3 3 55 88 55 3 3 3 666 3
lowQualScore : . .. ............. . . . .. . .................. . . . .. . . . . . . . . .. . . . .... .. .. . ... ... . . . . . ... .. . . . . . .. . .... .. ...... ....... . . . ... . . . . ..... .. . . . .. .. .. . . . ... .
lowQualScore : 4 00 0000000000000 7 7 7 33 4 111111111111111111 0 6 6 00 0 3 0 3 1 1 2 3 77 7 7 7 6666 22 44 7 777 777 7 3 7 1 1 888 99 3 1 1 1 1 11 1 7777 77 777777 7777777 7 1 1 222 1 5 8 9 66666 00 3 6 6 00 66 00 6 6 6 444 6
consensus : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
Reference ( family-2719 ) : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
gi|1 : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTCA-TTTCAGTCCTTT-CT--TTCTTTT-GCTTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGT-AAAA-GTAAAAATCTTGC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAT--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCGA--A------GT-------AA-C-T-AGA-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-ACATCGATAAATGC
gi|10 : T-A-CAC--TAT-ACAAGA-AC-TGT-AAAATGTGAAAATCTTGC--AATAATG-CGTTT-CATG-A--TTGGAAAG--TCTACA-TC-CTTTTA---TTTTCA---TAAC-TTAAAATACATAAAATAGA-ATCGA---A--TTTAAATTATT-CCATTTAAATAAAAAGCAT-ATA--G-GA
gi|11 : gaaaaaattcccaaaattcaacctTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G-GAAAA------AA--A------GA-------AG-
gi|11 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|12 : tggttgggaagtctacagatttttattttcatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-T-AAAATACATGAAATAAA-A-CAAC--AAATTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G-GAAAA------AA--A------GA-------AG-
gi|12 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|13 : tggttgggaagtctacagatttttattttcatactaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttAACACGATACCG-GAAAG-C--G-----A------GT-------AA-C-T-ACC------AAAGTTT---CCGGCATATAGATAAATCCAC-TTTATACT-TGATTTTCAA--ATAT--ACACAG-ACATCT-ACGTCGAT-AATGC
gi|14 : tcccaccatttgaaaatgcgaggttagaggttctggcaatagtatgccC-ATAC-G-GAATA-T--ACAA--A------GT-------AG-C-T-AGACT-AGGAATGTTTAAAAC--CATAT-TATAAATC--C-TTTATA-T-TGA--TTCAATCATTT--A-A-AG-A---TT-G-ATCGATAAATGCat
gi|15 : cataaagtataaaaaaaacggaacgggggggggggcttcggccc-CT-A-CAC--TAT-A-AAGA-AC-TGT-AAAA-GTGAAAATCTTGC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TA-CTTTTA---TTTTCA---T-AC-TTAAAATACATAAAATAGA-A-CAA---A--TTa
gi|16 : ttgccgtgaaaaattcccaaaattcaac-A-AAGA-AC-TGT-AGAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TATTTTTTA---TTTTGA---T-AC-GTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATC
gi|17 : C-ATAC-G-GATAA-TTTGCAA---------GT-------AGGC-T-AG--T-AG-AATGTTT
gi|18 : caagtcttacgttatccttttaaattcagcgaaactatggaattaataagggggggggaggggggtcgtcccCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGC-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGAT
gi|19 : --A--CTTAAGTTA-T-CCTTTT-AATCGAAAACAT-ATA--G-GA
gi|2 : aCAAAATCCCTACTATCTATT-T-------------GTACGA-TATGTTAA-TTTTAGTTCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-TAA--TAT-A-ATGA-AC-TGT-GAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AATCGAAAACAC-ATAG-G-GAAAA-T--GCAA--AGTACATGT-------AG-C-T-AGG-T-AG-AATGTTTAAATC--CATATATATAttaataagggggggggaggggggtgtcggccccatacggaaaatgca
gi|20 : CAAAAACCCTACTATCTATTCTTTTAGTACGCTTTGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCtaaatacaaataggcgaaggtaacatcg
gi|21 : A-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAA-G-CAAAA-
gi|22 : ATAAATC--A-CTGATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGgaa
gi|23 : --C-TTTATA-T-TGA--TTCAAG-ATATTAA-A-AG-A---TT-GCATCGATAAAT
gi|24 : --C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGCtgca
gi|25 : --C-CTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATGGATAAAT
gi|26 : C-ATAT-G-GAAAA-T--GCAA--A------GT-------AG-C-CGAGGTT-AG-AAT
gi|3 : ggccc------------------AG-CTCA-CAA--TAT-A--TGA-ACGTGT-AAAAAGTAAAAATCTTGC--AA-AATG-CGATT-CATT-GACTCTGAAAG--TCTACA-TA-TTTTTA---TTT---------------------TAAAATAGA-A-CAA---A--TTTAAGTTG-TATCATTT-AATCAAAAGCAT-ATAG-GTGAAAACT--GCCATTA------GT-------AG-CTT-AGG-T-AG-AGTGTTTAAACC--CA-GTATATTAATC--C-TTTATA-TCTGA--TTCCA--ATAT--A-A-AG-A---TTGGCATCGAAAAATGC
gi|4 : tgccgtgacaaaattctcctaaaaattcatCAAAATCCCTACTATCTATTTG-------------GTACGA-TATGTTAAATTTTAGTTCTTT-CTCTTTCTTTTTGCCTTG------------------AG-CT-AATAA--TAT-A-ATGA-AC-TGTTGAAA-GTAAAA-TCTTACCAAA-AATG-CGATT-CATG----TTGGAA-G--TCTATAATA-TTTTTA---TTTTGA---T-AC-TTAAAGTAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AA-CGAAAA-AC-ATAG-G-GAAAA-T--GCAA--A------GTACATGTAAG-C-T-AGG-T-AG-AATGTTTAAATC--t
gi|5 : c-TGT-AAAA-GTACAAACCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TATACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AACCGAAAACAC-ATAG-G-GTAA
gi|5 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGA-T-AG-AATGTTTAAACC--C--ATATATAAATC--C-TTTATA-T-TGA--TTCAA--ACAT--A-A-AGCC---TT-GCATCGATAAATGCctaagaaaaaagggggtcggccccatacggaaaatgcaaagtagctagatagaatgtttaaacccatatataaatcctttatattgattcaaacataaagccttgcatcgataaatgc
gi|6 : tgtaaaagtacaaaccttacaaaatgcgattcatggttggaaagtatacatatttttattttgatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaaccgaaaacacatagggtaactaagaaaaaagggggtcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|6 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|6 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-TTAG-AA-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|7 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-TTAG-AA-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|8 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccCAAAAAGCCTA--ATCTAT-CT-------------GTACGACTATGTTCA-TTTCAGTCCTTTTCTGGTTCTTTTTGCTTTG------------------AGGCT-A-CAAACTAT-A-ATGACAC-TGT-AAAA-GTAAAAATCTTGC--AA-AATGCCGATTCCATT-G--TTGGAAAGGTTCTACA--A--TTTTATCTTTTTGATTTT-AC-TTAAAATTGATGAATTAAAGA-AAAT--A-----GAG-TA-T-CCATTC-AA
gi|9 : ACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GTCGTGAAAAATCCCCATAATTCAAG-CT-G-CAA--TATAA-AAAA-AA-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAA--TCAACA--------TA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTAA-T-CCATTT-AATCGGAAAC
Alignments
lowQualScore : 4444444444444 11 1 444444444444444444 1 111 11 111 11111
lowQualScore : 1 44 4444444444444 6 6 6 88 1 222222222222222222 4 3 3 55 0 3 1 3 3 3 6 2 33 2 2 2 5555 33 33 2 444 444 2 5 1 3 3 555 33 2 3 3 3 2 00 2 4444 33 777777 8888888 2 3 3 333 3 0 1 1 11111 55 7 3 3 55 88 55 3 3 3 666 3
lowQualScore : . .. ............. . . . .. . .................. . . . .. . . . . . . . . .. . . . .... .. .. . ... ... . . . . . ... .. . . . . . .. . .... .. ...... ....... . . . ... . . . . ..... .. . . . .. .. .. . . . ... .
lowQualScore : 4 00 0000000000000 7 7 7 33 4 111111111111111111 0 6 6 00 0 3 0 3 1 1 2 3 77 7 7 7 6666 22 44 7 777 777 7 3 7 1 1 888 99 3 1 1 1 1 11 1 7777 77 777777 7777777 7 1 1 222 1 5 8 9 66666 00 3 6 6 00 66 00 6 6 6 444 6
consensus : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
Reference ( family-2719 ) : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
gi|1 : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTCA-TTTCAGTCCTTT-CT--TTCTTTT-GCTTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGT-AAAA-GTAAAAATCTTGC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAT--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCGA--A------GT-------AA-C-T-AGA-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-ACATCGATAAATGC
gi|10 : T-A-CAC--TAT-ACAAGA-AC-TGT-AAAATGTGAAAATCTTGC--AATAATG-CGTTT-CATG-A--TTGGAAAG--TCTACA-TC-CTTTTA---TTTTCA---TAAC-TTAAAATACATAAAATAGA-ATCGA---A--TTTAAATTATT-CCATTTAAATAAAAAGCAT-ATA--G-GA
gi|11 : gaaaaaattcccaaaattcaacctTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G-GAAAA------AA--A------GA-------AG-
gi|11 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|12 : tggttgggaagtctacagatttttattttcatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-T-AAAATACATGAAATAAA-A-CAAC--AAATTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G-GAAAA------AA--A------GA-------AG-
gi|12 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|13 : tggttgggaagtctacagatttttattttcatactaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttAACACGATACCG-GAAAG-C--G-----A------GT-------AA-C-T-ACC------AAAGTTT---CCGGCATATAGATAAATCCAC-TTTATACT-TGATTTTCAA--ATAT--ACACAG-ACATCT-ACGTCGAT-AATGC
gi|14 : tcccaccatttgaaaatgcgaggttagaggttctggcaatagtatgccC-ATAC-G-GAATA-T--ACAA--A------GT-------AG-C-T-AGACT-AGGAATGTTTAAAAC--CATAT-TATAAATC--C-TTTATA-T-TGA--TTCAATCATTT--A-A-AG-A---TT-G-ATCGATAAATGCat
gi|15 : cataaagtataaaaaaaacggaacgggggggggggcttcggccc-CT-A-CAC--TAT-A-AAGA-AC-TGT-AAAA-GTGAAAATCTTGC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TA-CTTTTA---TTTTCA---T-AC-TTAAAATACATAAAATAGA-A-CAA---A--TTa
gi|16 : ttgccgtgaaaaattcccaaaattcaac-A-AAGA-AC-TGT-AGAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TATTTTTTA---TTTTGA---T-AC-GTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATC
gi|17 : C-ATAC-G-GATAA-TTTGCAA---------GT-------AGGC-T-AG--T-AG-AATGTTT
gi|18 : caagtcttacgttatccttttaaattcagcgaaactatggaattaataagggggggggaggggggtcgtcccCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGC-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGAT
gi|19 : --A--CTTAAGTTA-T-CCTTTT-AATCGAAAACAT-ATA--G-GA
gi|2 : aCAAAATCCCTACTATCTATT-T-------------GTACGA-TATGTTAA-TTTTAGTTCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-TAA--TAT-A-ATGA-AC-TGT-GAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AATCGAAAACAC-ATAG-G-GAAAA-T--GCAA--AGTACATGT-------AG-C-T-AGG-T-AG-AATGTTTAAATC--CATATATATAttaataagggggggggaggggggtgtcggccccatacggaaaatgca
gi|20 : CAAAAACCCTACTATCTATTCTTTTAGTACGCTTTGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCtaaatacaaataggcgaaggtaacatcg
gi|21 : A-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAA-G-CAAAA-
gi|22 : ATAAATC--A-CTGATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGgaa
gi|23 : --C-TTTATA-T-TGA--TTCAAG-ATATTAA-A-AG-A---TT-GCATCGATAAAT
gi|24 : --C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGCtgca
gi|25 : --C-CTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATGGATAAAT
gi|26 : C-ATAT-G-GAAAA-T--GCAA--A------GT-------AG-C-CGAGGTT-AG-AAT
gi|3 : ggccc------------------AG-CTCA-CAA--TAT-A--TGA-ACGTGT-AAAAAGTAAAAATCTTGC--AA-AATG-CGATT-CATT-GACTCTGAAAG--TCTACA-TA-TTTTTA---TTT---------------------TAAAATAGA-A-CAA---A--TTTAAGTTG-TATCATTT-AATCAAAAGCAT-ATAG-GTGAAAACT--GCCATTA------GT-------AG-CTT-AGG-T-AG-AGTGTTTAAACC--CA-GTATATTAATC--C-TTTATA-TCTGA--TTCCA--ATAT--A-A-AG-A---TTGGCATCGAAAAATGC
gi|4 : tgccgtgacaaaattctcctaaaaattcatCAAAATCCCTACTATCTATTTG-------------GTACGA-TATGTTAAATTTTAGTTCTTT-CTCTTTCTTTTTGCCTTG------------------AG-CT-AATAA--TAT-A-ATGA-AC-TGTTGAAA-GTAAAA-TCTTACCAAA-AATG-CGATT-CATG----TTGGAA-G--TCTATAATA-TTTTTA---TTTTGA---T-AC-TTAAAGTAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AA-CGAAAA-AC-ATAG-G-GAAAA-T--GCAA--A------GTACATGTAAG-C-T-AGG-T-AG-AATGTTTAAATC--t
gi|5 : c-TGT-AAAA-GTACAAACCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TATACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AACCGAAAACAC-ATAG-G-GTAA
gi|5 : C-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGA-T-AG-AATGTTTAAACC--C--ATATATAAATC--C-TTTATA-T-TGA--TTCAA--ACAT--A-A-AGCC---TT-GCATCGATAAATGCctaagaaaaaagggggtcggccccatacggaaaatgcaaagtagctagatagaatgtttaaacccatatataaatcctttatattgattcaaacataaagccttgcatcgataaatgc
gi|6 : tgtaaaagtacaaaccttacaaaatgcgattcatggttggaaagtatacatatttttattttgatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaaccgaaaacacatagggtaactaagaaaaaagggggtcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|6 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|6 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-TTAG-AA-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|7 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-TTAG-AA-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|8 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccCAAAAAGCCTA--ATCTAT-CT-------------GTACGACTATGTTCA-TTTCAGTCCTTTTCTGGTTCTTTTTGCTTTG------------------AGGCT-A-CAAACTAT-A-ATGACAC-TGT-AAAA-GTAAAAATCTTGC--AA-AATGCCGATTCCATT-G--TTGGAAAGGTTCTACA--A--TTTTATCTTTTTGATTTT-AC-TTAAAATTGATGAATTAAAGA-AAAT--A-----GAG-TA-T-CCATTC-AA
gi|9 : ACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GTCGTGAAAAATCCCCATAATTCAAG-CT-G-CAA--TATAA-AAAA-AA-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAA--TCAACA--------TA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTAA-T-CCATTT-AATCGGAAAC
blockSeqs : T TC TTTAGTACGCTTT C A T CT T AAAAATCCCCATAATTCA G C A AC T C A C G T T A CA T C C GAC GT AT T TCT TTT A T C G T CAA AA T T A A G CC T TTT TT GTACAT ACATGTA G T G TT G A C GGCAT CA C C C TT TC TA C C C CAT G
blockSeqs : A TT . . . . GG T . . . . . T . A . . . A A . . . . TA . T . . . . T C . . CAA . T . . . . C . CT . . . . . . TT . A A CAT . C . . . G . . . . . .
blockSeqs : T T . . . . . . . . . . . A . A . . . . A . . . . TA . G . . . . . C . . CAA . T . . . . C . T . . . . . . CT . A T CAT . . . . . . . . . . . .
blockSeqs : A C . . . . . . . . . . . . . T . . . . A . . . . A . G . . . . . C . . C . T . . . . C . T . . . . . . TT . A C CA . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . A . . . . G . T . . . . . G . . C . T . . . . C . C . . . . . . TT . A T C . . . . . . . . . . . .
blockSeqs : . . . . . . . . T . . . . A . . . . G . T . . . . . G . . C . T . . . . G . T . . . . . . TT . . C . . . . . . . . . . . . .
blockSeqs : . . . . . . T . . . . A . . . . A . T . . . . . G . . C . T . . . . A . T . . . . . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . A . . . . A . T . . . . . G . . C . T . . . . T . T . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . . . A . . . . G . T . . . . . C . . T . T . . . . G . T . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . G . T . . . . . C . . . . . . . . . G . T . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . G . T . . . . . C . . . . . . . . . G . T . . . . . . T .
blockSeqs : . . . . . . . . G . T . . . . . G . . . . . . . . . C . T . . . . . . . .
blockSeqs : . . . . G . . . . . . . C . . C . . . . . .
blockSeqs : . . . . G . . . . . . . . . C . . . . . .
blockSeqs : G . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : TC TT*
originalCons : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGG-T-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
finalCons : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G-GAAAA-T--GCAA--A------GT-------AG-C-T-AGGTT-AG-AATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
Alignments
lowQualScore : 4444444444444 11 1 444444444444444444 1 111 11111111111 1111111111111111 1111 11111
lowQualScore : 1 44 4444444444444 6 6 6 88 1 222222222222222222 4 3 3 55 0 3 1 3 3 3 6 2 33 2 2 2 5555 33 33 2 444 444 2 5 1 3 3 555 33 2 3 3 3 2 11111111111 6666666666666666 4444 33 33 777777 8888888 2 3 3 5555 3 6666 0 1 1 11111 55 7 3 3 55 88 55 3 3 3 666 3
lowQualScore : . .. ............. . . . .. . .................. . . . .. . . . . . . . . .. . . . .... .. .. . ... ... . . . . . ... .. . . . . . ........... ................ .... .. .. ...... ....... . . . .... . .... . . . ..... .. . . . .. .. .. . . . ... .
lowQualScore : 4 00 0000000000000 7 7 7 33 4 111111111111111111 0 6 6 00 0 3 0 3 1 1 2 3 77 7 7 7 6666 22 44 7 777 777 7 3 7 1 1 888 99 3 1 1 1 2 44444444444 6666666666666666 7777 77 77 777777 7777777 7 1 1 6666 1 5555 4 8 9 66666 00 3 6 6 00 66 00 6 6 6 444 6
consensus : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-T-AGGT---TAG-A----ATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
Reference ( family-2719 ) : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ANGA-AC-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-T-AGGT---TAG-A----ATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGC
gi|1 : CAAAAACCCTACTATCTATTCT-------------GTACGA-TATGTTCA-TTTCAGTCCTTT-CT--TTCTTTT-GCTTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGT-AAAA-GTAAAAATCTTGC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAT--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAC-G--------GAAA----------------A-T--GC--GA--A------GT-------AA-C-T-AGA----TAG-A----ATGTTTAAACC--CATATATATAAATC--C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-ACATCGATAAATGC
gi|10 : T-A-CAC--TAT-ACAAGA-AC-TGT-AAAATGTGAAAATCTTGC--AATAATG-CGTTT-CATG-A--TTGGAAAG--TCTACA-TC-CTTTTA---TTTTCA---TAAC-TTAAAATACATAAAATAGA-ATCGA---A--TTTAAATTATT-CCATTTAAATAAAAAGCAT-ATA--G--------GA
gi|11 : gaaaaaattcccaaaattcaacctTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G--------GAAA----------------A--------AA--A------GA-------AG-
gi|11 : C-ATAC-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-T-AGGT---TAG-A----ATGaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|12 : tggttgggaagtctacagatttttattttcatacttaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttTG-G--TTGGGAAG--TCTACA-GA-TTTTTA---TTTTCA---T-AC-T-AAAATACATGAAATAAA-A-CAAC--AAATTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATA--G--------GAAA----------------A--------AA--A------GA-------AG-
gi|12 : C-ATAC-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-T-AGGT---TAG-A----ATGaaaaaaaaaaagggggggggcggctttcatacggaaaatgcaaagtagctaggttagaatg
gi|13 : tggttgggaagtctacagatttttattttcatactaaaatacatgaaataaaacaacaaatttaagttatccatttaatcgaaaacacataggaaaaaaagaagaaaaaaaaaaagggggggggcggctttAACACGATACCG--------GAAA----------------G-C--G-------A------GT-------AA-C-T-A--C---CAA-A------GTTT---CCGGCATATAGATAAATCCAC-TTTATACT-TGATTTTCAA--ATAT--ACACAG-ACATCT-ACGTCGAT-AATGC
gi|14 : tcccaccatttgaaaatgcgaggttagaggttctggcaatagtatgccC-ATAC-G--------GAAT----------------A-T--AC--AA--A------GT-------AG-C-T-AGAC---TAGGA----ATGTTTAAAAC--CATAT-TATAAATC--C-TTTATA-T-TGA--TTCAATCATTT--A-A-AG-A---TT-G-ATCGATAAATGCat
gi|15 : cataaagtataaaaaaaacggaacgggggggggggcttcggccc-CT-A-CAC--TAT-A-AAGA-AC-TGT-AAAA-GTGAAAATCTTGC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TA-CTTTTA---TTTTCA---T-AC-TTAAAATACATAAAATAGA-A-CAA---A--TTa
gi|16 : ttgccgtgaaaaattcccaaaattcaac-A-AAGA-AC-TGT-AGAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-A--TTGGAAAG--TCTACA-TATTTTTTA---TTTTGA---T-AC-GTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATC
gi|17 : C-ATAC-G--------GATA----------------A-TTTGC--AA---------GT-------AGGC-T-AG-----TAG-A----ATGTTT
gi|18 : caagtcttacgttatccttttaaattcagcgaaactatggaattaataagggggggggaggggggtcgtcccCTTTT-GCCTTG------------------AG-CT-A-CAA--TAT-A-ATGA-AC-TGC-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGAT
gi|19 : --A--CTTAAGTTA-T-CCTTTT-AATCGAAAACAT-ATA--G--------GA
gi|2 : aCAAAATCCCTACTATCTATT-T-------------GTACGA-TATGTTAA-TTTTAGTTCTTT-CT--TTCTTTT-GCCTTG------------------AG-CT-A-TAA--TAT-A-ATGA-AC-TGT-GAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TCTACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AATCGAAAACAC-ATAG-G--------GAAA----------------A-T--GC--AA--AGTACATGT-------AG-C-T-AGG----TAG-A----ATGTTTAAATC--CATATATATAttaataagggggggggaggggggtgtcggccccatacggaaaatgca
gi|20 : CAAAAACCCTACTATCTATTCTTTTAGTACGCTTTGTACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GCtaaatacaaataggcgaaggtaacatcg
gi|21 : A-A-CAAC--A--TTTAAGTTA-T-CCATTT-AATCGAAAACAC-ATAA-G--------CAAA----------------A-
gi|22 : ATAAATC--A-CTGATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGgaa
gi|23 : --C-TTTATA-T-TGA--TTCAAG-ATATTAA-A-AG-A---TT-GCATCGATAAAT
gi|24 : --C-TTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATAAATGCtgca
gi|25 : --C-CTTATA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATGGATAAAT
gi|26 : C-ATAT-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-CGAGGT---TAG-A----AT
gi|3 : ggccc------------------AG-CTCA-CAA--TAT-A--TGA-ACGTGT-AAAAAGTAAAAATCTTGC--AA-AATG-CGATT-CATT-GACTCTGAAAG--TCTACA-TA-TTTTTA---TTT---------------------TAAAATAGA-A-CAA---A--TTTAAGTTG-TATCATTT-AATCAAAAGCAT-ATAG-GT-------GAAA----------------ACT--GC--CATTA------GT-------AG-CTT-AGG----TAG-A----GTGTTTAAACC--CA-GTATATTAATC--C-TTTATA-TCTGA--TTCCA--ATAT--A-A-AG-A---TTGGCATCGAAAAATGC
gi|4 : tgccgtgacaaaattctcctaaaaattcatCAAAATCCCTACTATCTATTTG-------------GTACGA-TATGTTAAATTTTAGTTCTTT-CTCTTTCTTTTTGCCTTG------------------AG-CT-AATAA--TAT-A-ATGA-AC-TGTTGAAA-GTAAAA-TCTTACCAAA-AATG-CGATT-CATG----TTGGAA-G--TCTATAATA-TTTTTA---TTTTGA---T-AC-TTAAAGTAGATGAAATAAA-A-CAAC--A--TTTAAG-TA-T-CCATTT-AA-CGAAAA-AC-ATAG-G--------GAAA----------------A-T--GC--AA--A------GTACATGTAAG-C-T-AGG----TAG-A----ATGTTTAAATC--t
gi|5 : c-TGT-AAAA-GTACAAACCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAG--TATACA-TA-TTTTTA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTTA-T-CCATTT-AACCGAAAACAC-ATAG-GGTAACTAAGAAAAAAGGGGGTCGGCCCCA-T--ACGGAA--A------AT--------G-C-A-AAGTAGCTAG-ATAGAATGTTTAAACC--C--ATATATAAATC--C-TTTATA-T-TGA--TTCAA--ACAT--A-A-AGCC---TT-GCATCGATAAATGC
gi|6 : G-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|6 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|6 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-T-AGGT---TAG-A----A-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccG-CT-A-CAA--TATTA-AAGA-AC-TGT-AAAA-GTAAAA-TCTTAC--AA-AATG-CAATT-CATGTA--TTTTAAAG--T
gi|7 : attcccataattcaatataaagaattat--AA-AATG-CG-TT-CATG-G--TTGGAACG--TCTACA-TA-TTTTTA---TTTTGA---T-ACTTTAAAATACATGAAatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|7 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaaC-ATAC-G--------GAAA----------------A-T--GC--AA--A------GT-------AG-C-T-AGGT---TAG-A----A-----------------AGATAAATC--CCTTTACA-T-TGA--TTCAA--ATAT--A-A-AG-A---TT-GCATCGATtgggtggggggatcggccccatacggaaaatgcaaagtagctaggttagaaagataaatccctttacattgattcaaatataaagattgcatcgat
gi|8 : attcccataattcaatataaagaattatgctacaatattaaagaactgtaaaagtaaaatcttacaaaatgcaattcatgtattttaaagtatcaaaataaaaatatgtagacgttccaaccatgaacgcatttttgggtggggggatcggcccCAAAAAGCCTA--ATCTAT-CT-------------GTACGACTATGTTCA-TTTCAGTCCTTTTCTGGTTCTTTTTGCTTTG------------------AGGCT-A-CAAACTAT-A-ATGACAC-TGT-AAAA-GTAAAAATCTTGC--AA-AATGCCGATTCCATT-G--TTGGAAAGGTTCTACA--A--TTTTATCTTTTTGATTTT-AC-TTAAAATTGATGAATTAAAGA-AAAT--A-----GAG-TA-T-CCATTC-AA
gi|9 : ACGA-TATGTTAA-TTTTAGTCCTTT-CT--TTCTTTT-GTCGTGAAAAATCCCCATAATTCAAG-CT-G-CAA--TATAA-AAAA-AA-TGT-AAAA-GTAAAAATCTTAC--AA-AATG-CGATT-CATG-G--TTGGAAAA--TCAACA--------TA---TTTTGA---T-AC-TTAAAATACATGAAATAAA-A-CAACAAA--TTTAAGTAA-T-CCATTT-AATCGGAAAC