lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 3333333 222 2222 111 66666666666666666666666666666 1 222 4444 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 666666666666666666 222 11 22222222 888888888888888888888888888888888888888888 2222 333
lowQualScore : 6 9999999 333 5555 666 77777777777777777777777777777 3 333 0 4 1111 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 11 9 333333333333333333 333 1 66 99999999 77 33 888888888888888888888888888888888888888888 1111 333
lowQualScore : . ....... ... .... ... ............................. . ... . . .... . ...................................................................................................................................................................................................................................................................................................................................................................................................................... . .. . .................. ... . .. ........ .. .. .......................................... .... ...
lowQualScore : 0 0000000 333 3333 333 00000000000000000000000000000 3 000 7 7 7777 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 33 8 555555555555555555 000 4 44 55555555 55 22 555555555555555555555555555555555555555555 2222 000
consensus : NNNGTGGGTATTCANTCNGCTAGATTTTCT---TGAGTCATTATAACAACCGACCG-C-ATG---TA--ATA-TATATTCCACATTT-TATGCATC-GATTTCCAGNCACGCACATGTAGTTCCTGACATCCCGGNNATGGATTACTTCGCTTG--ACATGTGACGTATTTC----NTCGTTA-----------TT-----TTTA--CACGCAAAGATCGATTTATTA--TG-C---TGGTCACT---TT-TT-ATAGNAGCGGTGAATGGTA--GTGNAAATGCAAGATTGAGCC-ATTAAT-G-AA--TTGAACTTAGTTTAATGCACAA----ATGC----ACA-AATTTTGGGGTTTAGACAGAACT--G---AA-----TACTTTTTTTAT-TCTT-C---GCTAACTAAAAATTTTCAAACAAATNT---GG-GAC--TTTTCTCCGATTNTCCTCNCCATCAGCCTCCCCANTTTATCCATTTTCAAAANCCGTGGTGNTGGTAAGTGCC--------TGGACTCGTTATATCTGATA-NCATN-A--TG-T-GTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAGATCTCGTTGGATATANTAGT-----ATAT----TAA-------AATCGNA-----------GACG----AAATAATGGTTCCGATATTCCAT
Reference ( gi|1 ) : TGTGTGGATATTTACGTAGTGAGATTTTCT---TGAGTCATGATCACAATCTACCA-C-ATG---TATCATG-TATATTTTACAATT-TATGCATT-GATCTCCAGACTTATACATGTAGCTCCC--CCTCCCAGTGAT---------TTCTTG--ACATGTGGCGTACTT-----GTC---------------TT-----TTTA--CATGCAATGATTGATTTATT---TG-C---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACC-ATCAAT-G-AA--TTGAACTCA----AATCCCCAAGCCCATGCTTTAATACAATTTTGGGGTTTGGGCAGAACT--ATAAAACTTTGTACTTTTCTTACTTCTTGTTTAGCTAACCAAGAATTTTCATACCAATATGATAGCAACTCTTTTATCTG--TGTGCTCCCCATC-----CCTCAATTT---------CAAAATC---GACACC---AAGTGCC--------TGAACTCGCTATATCTGATA-GTATG-A--TG-TTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTAA------ATAT----TAA-------AATCGCT-----------GACG----AAATAATGGTATGGATATTCCATATCT
gi|2 : GTGGGTATTCAATCTGTTAGATTTTCC---TGAGTCATTATAACAGCCGATCAAT-ATGCAATATCATA-AATAATC-ACATTT-TAAGCACC-TATCTCTTGAC----ACATA-AGTTT----------GGGGATGGATTACTTTTCTTG--ACAAGTGACGTATTT-----CTCGTTATTATCACAAAGTTCGGTATTTAAACATGCCAAGATCGATTTATTA--TG-----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGTGTTCTTAGTTTAATGCACAA----ATGC----ACA-AATTTTGGGGGATAGGCAGAACTAAATAAAA-----TA-----------TCTTGT-----TAACTAAGAATTTTAAGATAAATCTT-CAGGGACCCTTTT-TCT
gi|9 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacTATTTACTCAACTAGATTTTCTTCTTGAGTCATTATAACAACTGACCACC-ATG---AA--ATA-TA-ATGGCACATTT-TATCCATCAGTTTTTCAGTCACATACATGTAG
gi|4 : tagcagaagacaatgcaaataaagtcttagtaccatatatttcctATTTTGT---TAAATTACAA---CAACCGACCG-CCATG---TA--ATGGTCTATTCTAATGTTCTATGCATC-AATTTCCAGGCACGCACATGTA-TTCCTGACATCCC-GTTAT---------CACC----ACAT---ACAAATTTC----GTTA--------------TT-----TCTA--CATGCAAAGATCGATTTATTAACTA-CATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGA----ATTAAT-G-AA--TTGAtaatgggt
gi|11 : TCTTGGTACTTGTGCCATACTTTTAGCATCATTA-----------TT-----CTTA--AATTCAATATTCAAACTATT---TAAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC---TGAT-G-AA--TTAAACTgacgaactcgggtattgatgaccccctcccctcaacacacaaccacgaatttgggttttttccttgctaacaaaacattttcaaacaaatattttctctgattgtctcaccattccacttttaaaaacgatgttaattgcctcaactcattatataattatgtatgt
gi|13 : TATTT-----TTA---------------TA-----TTTA--CTCACAAAGATTGATT-ATT---AG-C---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TTGAA
gi|3 : ATTTTGGTATTTAGACAGAACT--G------------CTTTTTTTAT----------GCTGACTAAAAATATCCAAACAAATTTGAAGACAACG-TTTTCTCCA--TTTCCTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATACACAT--A--TG-T-GTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT----TAA-------AATCACTATAGAATTGGAGATG----AAATAGTATTTTCGATATTCCATta
gi|15 : cctgccccctccaagATTTTGGGGTTTGGACAGAAC-------AACTTTgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|4 : ccttccacccccaagTTTTTCCTT-GCTAACAAAACATTTTCAAACAAATA------------TTTTCTCTGATTGT-CTCACCATT-----C--CACTTT---------TAAAAAC---GATGTT---AATTGCC--------TCAACTCATTATA--TAAT---TATGTA--TG-Tttttactataaaccagaactatcatatttagacaacatttcctttgtt
gi|10 : attttgttaaattacaacaaccgaccgccatgtaatggtctattctaatgttctatgcatcaatttccaggcacgcacatgtattcctgacatcccgttatcaccacatacaaatttcgttatttctacatgcaaagatcgatttattaactacatgtagttactaccttttgttgaggtaatgcaagattgaattaatgaattgagacgaactcgggtattgatgaccccctcccctcaacacacaaccacgaatttgggtAGTTCC--------TGGCCTCGCTATCACTGATG-GCATC-A--TC-T---GCTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT----CAAATTGCAGAATTGGA-----------GACGAAATAAATAATGGTTCTGATATT
gi|16 : ATATCTGATA-CTTTT-AGTTACTTGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATtgat
gi|14 : GCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG-TATAGTAAT-----ATGTGCAATAG-------AATCCGA-----------GACG----AAATAATGGTTCTAATATTCTAaaaatct
gi|12 : gCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATAAGGA------ATAA----TAA-------AACTGC------------GACG----GAAT
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TGCGACCGCGAGTTAAAAAGTTAGATTTACGACATTTGATGGCAGAAGGCATCACAAAACTAATTCATATCTAGTACCGTTTACTAGTATTCCCTCTACCGTGAGGGAATATTTACTGGTATGTTAGATTTTCTCTACTTTTTGTAACAGCCGATCGCTATACAATATAATGTCGTAGATAATCAATTCCCGTGCATCAATATTAGGTAAGTAGAAGGGGTCCTCTCTCTCCCCACTTTCATTGGACACGTGACTTAATTGTTTTTCCTGTTATTATCACATACAAAGTTCTTCAGATCGATCTATT
Unaligned ( gi|6 ): ACCACAATTTGTTAGATTTCCGAAGTCTGATAACAGAAGGCAACAGAAAACTAATTCACAGTAGGTCTAACATGTATTTTCTCTATCGTATATGGATTTTTACTAAGATTTTAGATTCTTTCAAGTCATTGTTACATCCGATTGCAATGTAACGATATCACAAAGAATCAAATTAAATATCCAGGCAAAGCAGCAAAGGGGTTCCCTTCCCGATTTTATTTCAAAGTGATTTACTTTTCCCATTATTATCACATACAAAGTTCAT
Unaligned ( gi|7 ): AAAATAAATCTGTATGATTTGAGATTATTTTTCAGAAAGTTACGAGTGAATATTCTATTCAAACCTGGAACCAAAAACGTGATTTCTGATGTTTGCTTGTGGAAGGCAGCACGAAACTAATTCACGGTACAGTGTATTTCCTCTATCCTGTTTAGATATTTACTCAGTTATTTTGTTAGATTTCCTCAAGTCATTGTACATAACAAAAGATCGCTTAGTCAGTGTTATCGTATATAATCATATTT
Unaligned ( gi|8 ): CTGATAGCAGAAGGCAACACAAAACTAATTCACAGTACTGTGTGTTTCCTTGATCGTACATGTATGTGGATTTTTACTACGATTTTTAGATTCTTTCAAGTCATTGTAACAACCGATCGCAATGAGAATCAAATTCAGTTTCCTGGCAAAGCTGCATGGTTCCCTCCCTGCTTTTATTTGACATGTGAAATAATTTTCCC
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 111 555555555555555555555555 22222222222 11111 33333333333333333333333333333333333 4444444444444444444444444444444444444444 22222222 333333333 111 1111111 222222 11 22222 99999999999999999999999999999999999999999999 22222222222222222222222222222222222 000000000000000000000000000000000000000000000000000000000000 555555 33333333 3333333 7777777777777777777777777777777777777777777 1111
lowQualScore : 0 2 1 22 77777 888 1 0000 777 0 99 222222222222222222222222 77 3 6 11111111111 1 1 55555 0 999 3 22222222222222222222222222222222222 2 3 4444444444444444444444444444444444444444 77 44 00000000 333333333 0 444 8 8 0 3 6 11 2222222 222222 1 8 8 11 00000 11111111111111111111111111111111111111111111 8 0 6 1 11111111111111111111111111111111111 1 1 000000000000000000000000000000000000000000000000000000000000 4 1 777777 1 6 66666666 0 0000000 8 8 3 0 2 22 33 44 2222222222222222222222222222222222222222222 1 7777 1
lowQualScore : . . . .. ..... ... . .... ... . .. ........................ .. . . ........... . . ..... . ... . ................................... . . ........................................ .. .. ........ ......... . ... . . . . . .. ....... ...... . . . .. ..... ............................................ . . . . ................................... . . ............................................................ . . ...... . . ........ . ....... . . . . . .. .. .. ........................................... . .... .
lowQualScore : 7 8 0 44 55555 888 1 6666 000 3 22 333333333333333333333333 77 5 7 22222222222 0 0 22222 7 222 0 55555555555555555555555555555555555 2 7 1111111111111111111111111111111111111111 99 11 77777777 444444444 8 000 0 0 8 8 4 88 6666666 222222 8 0 0 00 00000 77777777777777777777777777777777777777777777 0 8 8 8 77777777777777777777777777777777777 2 2 444444444444444444444444444444444444444444444444444444444444 0 0 333333 0 7 22222222 8 2222222 8 0 8 7 2 88 00 88 2222222222222222222222222222222222222222222 0 0000 4
consensus : NNNGTGGATATTTACTCNG----TTAGATTTTCT---CGAGTCATT----ATAACAACCGATCG-C-ATGTA--ATG-T-----ATAT-TC---------CA-CATT-TTATGCATC-GAT-T-----TCCAGGCA---C-GTACATGTAGTTC-CT--C-TCCCGGTGAT---TTACT-TCACTTG--ACANGTGACGTA------TTT----C-TCGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC----ACG-AATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TC----TT-GCTAACTAAGAATTTTCAAACAAATNT---GA-GA------C--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAA----TCCACTTTCAAAATC------GACGNTAAGTGCC--------TGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGT-----ATAT----TAAA-----G----AATC-----------GGAGACG----AAATAATGGTTTCGATATTCCAT
Reference ( family-2718 ) : NNNGTGGGTATTCANTCNG----CTAGATTTTCT---TGAGTCATT----ATAACAACCGACCG-C-ATGTA--ATA-T-----ATAT-TC---------CA-CATT-TTATGCATC-GAT-T-----TCCAGNCA---C-GCACATGTAGTTC-CTGACATCCCGGNNATGGATTACT-TCGCTTG--ACATGTGACGTA------TTT----CNTCGTTATT----------------TTTA--CACGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGNAGCGGTGAATGGTA--GTGNAAATGCAAGATTGAGCC-ATTAAT-G-AA--TT-----GAACTT-AGT-TTAATG---------------CACAA----ATGC----ACA-AATTTTGGGGTTTAGACAGAACTG-AA-------TACTTTTTTTA-T-TC----TTCGCTAACTAAAAATTTTCAAACAAATNT---GG-GA------C----TTTTCTCCGATTNTCCTCNCCATCAGCCTCCCCANTTTATCCATTTTCAAAANCCGTGGTGNTGGTAAGTGCC--------TGGACTCGTTATATCTGATAN-C----ATNATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAGATCTCGTTGGATATANTAGT-----ATAT----TAA-----------AATC-----------GNAGACG----AAATAATGGTTCCGATATTCCAT
gi|1 : GTGGATATTTACGTAG----TGAGATTTTCT---TGAGTCATG----ATCACAATCTACCA-C-ATGTATCATG-T-----ATAT-TT---------TA-CAAT-TTATGCATT-GAT-C-----TCCAGACT---T-ATACATGTAGCTC-CC--CCTCCCAGTGAT-------T-TC--TTG--ACATGTGGCGTA------CTT-----GTC----TT----------------TTTA--CATGCAA--------TGATTGATTTATT---TGC---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACC-ATCAAT-G-AA--TT-----GAACTC-A-----AATC---------------CCCAAGCCCATGCTTTAATACAATTTTGGGGTTTGGGCAGAACTATAAAACTTTGTACTTTTCTTACT-TCTTGTTTAGCTAACCAAGAATTTTCATACCAATAT---GA-TAGCAACTC----TTTTATCTG--TGTGCTCCCCATC-----CCTCAA---------TTTCAAAATC------GACACCAAGTGCC--------TGAACTCGCTATATCTGATAG-T----ATGATGTTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTAA------ATAT----TAA-----------AATC-----------GCTGACG----AAATAATGGTATGGATATTCCAT
gi|10 : tgtAGTTCC--------TGGCCTCGCTATCACTGATGG-C----ATCATC-TG--CTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT----CAAATTGCAG----AATT-----------GGAGACGAAATAAATAATGGTTCTGATATTatct
gi|11 : CTTGGTACTTGTGCCATA------CTTTTAGCATCATTATT----------------CTTA--AATTCAA--------TATTCAAACTATTT--AAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC---TGAT-G-AA--TT-----AAACTtgat
gi|12 : tCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATAA-GGA-----ATAA----TAAAACTGCGACGGAATC-----------GGAGAGA----AAATAATACTCTCCATATTCCA
gi|13 : TTATA----------------TTTA--CTCACAA--------AGATTGATT-ATTA---GC---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TT-----GAAa
gi|14 : tatttGCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG-TATAGTAAT-----ATGTGCAATAG-----------AATC-----------CGAGACG----AAATAATGGTTCTAATATTCTAta
gi|15 : gA-GATTTTGGGGTTTGGACAGAAC---A---------ACTTTTTTTA-C-T
gi|16 : ccttccacccccaATATCTGATAC-TTTTAGTTACT-TGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATAAAATCTataaaccagaactatcatatttagacaacatttcctttgtt
gi|2 : GTGGGTATTCAATCTG----TTAGATTTTCC---TGAGTCATT----ATAACAGCCGATCAAT-ATGCA--ATA-TCATAAATAA-TC----------A-CATT-TTAAGCACC-TAT-C-----TCTTGACA---C-ATA-----AGTTT-----------GGGGATGGATTACT-TTTCTTG--ACAAGTGACGTA------TTT----C-TCGTTATTATCACAAAGTTCGGTATTTAAACATGCCA--------AGATCGATTTATTA--TG----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGT-----GTTCTT-AGT-TTAATG---------------CACAA----ATGC----ACA-AATTTTGGGGGATAGGCAGAACTA-AA-------TAA------AA-TATC----TT-GTTAACTAAGAATTTTAAGATAAATCTTCAGG-GA------CCCT-TTTTCT
gi|3 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacA-GATTTTGGTATTTAGACAGAACTG------------CTTTTTTTA-T----------GCTGACTAAAAATATCCAAACAAATTT---GAAGA------CAACGTTTTCTCC-ATT-TCCTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATACAC----AT-ATG-TGTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT----TAA-----------AATCACTATAGAATTGGAGATG----AAATAGTATTTTCGATATTCCAT
gi|4 : cctgccccctccaATTTTGT---TAA---ATT----ACAACAACCGACCG-CCATGTA--ATGGT-----CTAT-TC---------TAATGTT-CTATGCATC-AAT-T-----TCCAGGCA---C-GCACATGTA-TTC-CTGACATCCCG--------TTA---TCACC----ACAT---ACAAA------TT-------TCGTTATT----------------TCTA--CATGCAA--------AGATCGATTTATTAACTACATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGA----ATTAAT-G-AA--TTGAGACGAACTCGGGTATTGATGACCCCCTCCCCTCAACACAC----AACC----ACG-AATTT--GGGTTT------------------------TTT---------C----CTTGCTAACAAAACATTTTCAAACAAATA--------------------TTTTCTCTGATTGT-CTCACCAT----------------TCCACTTTTAAAAAC------GATGTTAATTGCC--------TCAACTCATTATAT---A---------ATTATG-TATGgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|5 : G----TTAGATTTTCT---CTACTTTTT----GTAACAGCCGATCG-CTATACA--ATA-T-----A-ATGTCGTAGATAATCA--ATTCCCGTGCATC-AATAT-----T--AGGTA---A-GTAGAAGGGGTCCTCTCTC-TCCC----------CACTTTCATTGG--ACACGTGACTTAATTGTTTTT----CCT-GTTATT----------------ATCA--CATACAAAGTTCTTCAGATCGATCTATTt
gi|6 : tgcgaccgcgagttaaaaagttagatttacgacatttgatggcagaaggcatcacaaaactaattcatatctagtaccgtttactagtattccctctaccgtgagggaatatttactggtatTAGATTCTTT---CAAGTCATT----GTTACATCCGATTG-CAATGTA--ACG-------ATAT------------CA-CA-----AAGAATCAAAT-TAAATATCCAGGCAAAGCAGCAAA-GGGGTTC-C---CTTCCCGATT-----TTATT-TCA--------AAGTGATTTAC-----TTT----TCCCATTATT----------------ATCA--CATACAA--------AGTTC
gi|7 : accacaatttgttagatttccgaagtctgataacagaaggcaacagaaaactaattcacagtaggtctaacatgtattttctctatcgtatatggatttttactaagatttTTATTTTG----TTAGATTTCCT---CAAGTCATTGTACATAACAAAAGATCG-C-at
gi|8 : aaaataaatctgtatgatttgagattatttttcagaaagttacgagtgaatattctattcaaacctggaaccaaaaacgtgatttctgatgtttgcttgtggaaggcagcacgaaactaattcacggtacagtgtatttcctctatcctgtttagatatttactcagGTGGATTTTTACTACGATTTTTAGATTCTTT---CAAGTCATT----GTAACAACCGATCG-C-Attagtcagtgttatcgtatataatcatattt
gi|9 : ctgatagcagaaggcaacacaaaactaattcacagtactgtgtgtttccttgatcgtacatgtatTATTTACTCAA----CTAGATTTTCTTCTTGAGTCATT----ATAACAACTGACCACC-ATGAA--ATA-T-----A-AT-GG---------CA-CATT-TTATCCATCAGTT-T-----TTCAGTCA---C-ATACATGTAGTatgagaatcaaattcagtttcctggcaaagctgcatggttccctccctgcttttatttgacatgtgaaataattttccc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 22222222 1111 5555555555555555555555555555555555555 111111111111 222222 8888888888888888888888888888888888888 222222222222222222 33333333333333333 22222222 333333333 111 1111111 222222 11 22222 000000000000000000000000000000000000000000000 1 99999999999999999999999999999999999 777777777777777777 111 1 77777777777777777 7777777777777 1 3333333 999999999999999999999999999999999 1111
lowQualScore : 8888888888 00000000 9999 0000 3333333333333333333333333333333333333 666666 1 777777777777 555555 4 5 8 1111111111111111111111111111111111111 1 4 444444444444444444 88888888888888888 77 0 00000000 333333333 0 444 8 8 0 3 6 11 8888888 222222 1 8 8 11 00000 555555555555555555555555555555555555555555555 2 0 6 1 88888888888888888888888888888888888 1 1 333333333333333333 0 444 3 7 22222222222222222 3 3333333333333 0 1 0 0 0 0000000 8 8 3 0 22 22 5 555555555555555555555555555555555 7777 1
lowQualScore : .......... ........ .... .... ..................................... ...... . ............ ...... . . . ..................................... . . .................. ................. .. . ........ ......... . ... . . . . . .. ....... ...... . . . .. ..... ............................................. . . . . ................................... . . .................. . ... . . ................. . ............. . . . . . ....... . . . . .. .. . ................................. .... .
lowQualScore : 4444444444 77777777 9999 6666 1111111111111111111111111111111111111 222222 9 333333333333 666666 3 1 3 8888888888888888888888888888888888888 0 0 555555555555555555 44444444444444444 99 4 77777777 444444444 8 000 0 0 8 6 4 88 2222222 222222 4 0 0 00 00000 333333333333333333333333333333333333333333333 0 8 4 4 11111111111111111111111111111111111 2 2 555555555555555555 2 777 3 3 33333333333333333 7 3333333333333 7 0 2 0 8 2222222 6 0 8 7 88 22 0 444444444444444444444444444444444 0000 4
consensus : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTC---CC--C-TCCCGGTG-T---TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAA-T------A---------GAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
Reference ( family-2718 ) : NNNGTGGATATTTACTCN---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTC---CT--C-TCCCGGTGAT---TTAC-TTCACTTG--ACANGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGNTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGT-----ATAT-TAA---------A---------GAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
gi|1 : GTGGATATTTACGTA---G----TGA--------GATTTTCTT---GAGTCATG----ATCACAATCTACCA-C-------A-TGTATCAT-G-T-----ATAT--TTTA-CAATTTATGCATT-GA-T-C-----TCCAGACT---T-ATACATGTAGCTC---CC--CCTCCCAGTGAT---TT-------CTTG--ACATGTGGCGTA------CTTGT-----C----TT----------------TTTA--CATGCAA--------TGATTGATTTATT---TGC---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACC-ATCAAT-G-AA--TT-----GAACTC-A-----AATC---------------CCCAAGCCCATGCTTTAATAC-AATTTTGGGGTTTGGGCAGAACTATAAAACTTTGTACTTTTCTTACT-TCTTGTTTAGCTAACCAAGAATTTTCATACCAATAT---GATAGCAACT-C-TTTTATCTG--TGTGCTCCCCATC-----CCTCAA---------TTTCAAAATC-------------GACACCAAGT-GCCTGAACTCGCTATATCTGATAG-T----ATGATGTTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTAA------ATAT-TAA--------------------AATCGCTGACG----AAATAATGGTATGGATATTCCAT
gi|10 : tgtAGT-TCCTGGCCTCGCTATCACTGATGG-C----ATCATC-TG--CTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT-CAAATTGC----A---------GAATTGGAGACGAAATAAATAATGGTTCTGATATTatct
gi|11 : CTTGGTACTTGTGCCATA------CTTTTAGCATCATTATT----------------CTTA--AATTCAA--------TATTCAAACTATTT--AAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC---TGAT-G-AA--TT-----AAACTtgat
gi|12 : tCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATA--AGGA----ATAA-TAA---------AACTGCGACGGAATCGGAGAGA----AAATAATACTCTCCATATTCCA
gi|13 : TA------TTT---------TTATA----------------TTTA--CTCACAA--------AGATTGATT-ATTA---GC---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TT-----GAAa
gi|14 : GCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG-TATAGTAAT-----ATGTGCAAT--------A---------GAATCCGAGACG----AAATAATGGTTCTAATATTCTAta
gi|15 : gATTTTGGGGTTTGGACAGAAC-A-----------ACTTTTTTTA-C-T
gi|16 : ccttccacccccaagATATCTGATAC-TTTTAGTTACT-TGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATAAAATCTataaaccagaactatcatatttagacaacatttcctttgtt
gi|2 : GTGGGTATTCAATCT---G----TTA--------GATTTTCCT---GAGTCATT----ATAACAGCCGATCAAT-------A-TGCA--AT-A-TCATAAATAA--TC-A-CATTTTAAGCACC-TA-T-C-----TCTTGACA---C-ATA-----AGTTT-------------GGGGATGGATTAC-TTTTCTTG--ACAAGTGACGTA------TTTCT-----CGTTATTATCACAAAGTTCGGTATTTAAACATGCCA--------AGATCGATTTATTA--TG----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGT-----GTTCTT-AGT-TTAATG---------------CACAA----ATGC------ACAAATTTTGGGGGATAGGCAGAACTA-AA-------TAAA------A-TATCTT-----GTTAACTAAGAATTTTAAGATAAATCTTCAGG----GAC--C-CTTTTTC
gi|3 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacATTTTGGTATTTAGACAGAACTG------------CTTTTTTTA-T----------GCTGACTAAAAATATCCAAACAAATTT---GAA---GACAACGTTTTCTCC-ATTTC-CTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATACAC----AT-ATG-TGTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT-TAAAATCACTATA---------GAATTGGAGATG----AAATAGTATTTTCGATATTCCATt
gi|4 : cctgccccctccaagATTTTGTT---AA---ATT----ACAACAACCGACCG-CC------A-TGTA--AT-GGT-----CTAT--TCTAATGTTCTATGCATC-AA-T-T-----TCCAGGCA---C-GCACATGTA-TTC---CTGACATCCCG--------TTA---TCACC----ACAT---ACAAA------TTTC-------GTTATT----------------TCTA--CATGCAA--------AGATCGATTTATTAACTACATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGA----ATTAAT-G-AA--TTGAGACGAACTCGGGTATTGATGACCCCCTCCCCTCAACACAC----AACC------ACGAATTT--GGGTTT------------------------TT-------T-CCTT-----GCTAACAAAACATTTTCAAACAAATA-----------------TTTTCTCTGATTGT-CTCACCAT------------T----CCACTTTTAAAAAC-------------GATGTTAATT-GCCTCAACTCATTATAT---A---------ATTATG-TATGgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|5 : GAATATTTACTGGTATG----TTA--------GATTTTCTC---TACTTTTT----GTAACAGCCGATCG-CTATACA-A-TATA--AT-G-TCGTAGATAA--TCAA-T-TCCCGTGCATC-AA-TAT-----T--AGGTA---A-GTAGAAGGGGTCCTCTCT--C-TCCC----------CACTTTCATTGG--ACACGTGACTTAATTGTTTTTCC-----TGTTATT----------------ATCA--CATACAAAGTTCTTCAGATCGATCTATTt
gi|6 : tgcgaccgcgagttaaaaagttagatttacgacatttgatggcagaaggcatcacaaaactaattcatatctagtaccgtttactagtattccctctaccgtgaggTGGATTTTTACTAA---GATT-TTA--------GATTCTTTC---AAGTCATT----GTTACATCCGATTG-C-------AATGTA--AC-G-------ATAT----CA-CA----AAGAATC-AAAT-TAAATATCCAGGCAAAGCAGCAAA-GGGGTTC---CC--T-TCCCGAT--T---TTAT-TTCA--------AAGTGATTTACT----TTTCC-----CATTATT----------------ATCA--CATACAA--------AGTTC
gi|7 : accacaatttgttagatttccgaagtctgataacagaaggcaacagaaaactaattcacagtaggtctaacatgtattttctctatcgtataTAGATATTTACTCA---G----TTATTTTGTTAGATTTCCTC---AAGTCATTGTACATAACAAAAGATCG-CTTAGTCAG-TGTT--ATCG-T-----ATATAAT-CA-TATTTat
gi|8 : aaaataaatctgtatgatttgagattatttttcagaaagttacgagtgaatattctattcaaacctggaaccaaaaacgtgatttctgatgtttgcttgtggaaggcagcacgaaactaattcacggtacagtgtatttcctctatcctgttGTGGATTTTTACTAC---GATTTTTA--------GATTCTTTC---AAGTCATT----GTAACAACCGATCG-C------------A--AT-G-A-----GAAT----CA-AAT--------TC-AG-T-T-----TCCTGGCAAAGC--TGCATG--GTTC---C---C-TCCC--TGCT--------TTTATTTG--ACATGTGAAATA------ATTTT-----C
gi|9 : ctgatagcagaaggcaacacaaaactaattcacagtactgtgtgtttccttgatcgtacatgtatTATTTACTCA---A----CTA--------GATTTTCTTCTTGAGTCATT----ATAACAACTGACCACC-------A-TGAA--AT-A-T-----A-AT--GGCA-CATTTTATCCATCAGT-T-T-----TTCAGTCA---C-ATACATGTAGTcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 22222222 1111 5555555555555555555555555555555555555 111111111111 222222 1 11111111 55555555555 1111111 222222222222222222 33333333333333333 22222222 333333333 111 1111111 222222 11 22222 000000000000000000000000000000000000000000000 1 99999999999999999999999999999999999 777777777777777777 111 1 77777777777777777 7777777777777 1 3333333 1 222222 666666666666 1111
lowQualScore : 5555555555 00000000 9999 0000 3333333333333333333333333333333333333 666666 1 777777777777 555555 4 5 1 77777777 44444444444 5555555 0 4 444444444444444444 88888888888888888 77 0 00000000 333333333 0 444 8 8 0 3 6 11 8888888 222222 1 8 8 11 00000 555555555555555555555555555555555555555555555 2 0 6 1 88888888888888888888888888888888888 1 1 333333333333333333 0 444 3 7 22222222222222222 3 3333333333333 0 0 0 0 0000000 8 8 3 0 22 44 0 333333 8 8 555555555555 7777 1
lowQualScore : .......... ........ .... .... ..................................... ...... . ............ ...... . . . ........ ........... ....... . . .................. ................. .. . ........ ......... . ... . . . . . .. ....... ...... . . . .. ..... ............................................. . . . . ................................... . . .................. . ... . . ................. . ............. . . . . ....... . . . . .. .. . ...... . . ............ .... .
lowQualScore : 7777777777 77777777 9999 6666 1111111111111111111111111111111111111 222222 9 333333333333 666666 3 1 9 00000000 55555555555 2222222 6 0 555555555555555555 44444444444444444 99 4 77777777 444444444 8 000 0 0 8 6 4 88 2222222 222222 4 0 0 00 00000 333333333333333333333333333333333333333333333 0 8 4 4 11111111111111111111111111111111111 2 2 555555555555555555 2 777 3 3 33333333333333333 7 3333333333333 7 2 0 8 2222222 6 0 8 7 88 00 0 222222 0 0 666666666666 0000 4
consensus : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGATGC-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TA-AAA---C-AT---AGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
Reference ( family-2718 ) : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGGTGT-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TA-A-------AT---AGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
gi|1 : GTGGATATTTACGTA---G----TGA--------GATTTTCTT---GAGTCATG----ATCACAATCTACCA-C-------A-TGTATCAT-G-T-----ATAT--TTTA-CAATTTATGCATT-GA-T-C-----TCCAGACT---T-ATACATGTAGCTCC---CCCTCCCAGTG----AT-TTC--TTG--ACATGTGGCGTA------CTTGT-----C----TT----------------TTTA--CATGCAA--------TGATTGATTTATT---TGC---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACC-ATCAAT-G-AA--TT-----GAACTC-A-----AATC---------------CCCAAGCCCATGCTTTAATAC-AATTTTGGGGTTTGGGCAGAACTATAAAACTTTGTACTTTTCTTACT-TCTTGTTTAGCTAACCAAGAATTTTCATACCAATAT---GATAGCAACT-C-TTTTATCTG--TGTGCTCCCCATC-----CCTCAA---------TTTCAAAATC-------------GACACCAAGT-GCCTGAACTCGCTATATCTGATAG-T----ATGATGTTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTA--A----ATAT-TA-A--------------AATCGCTGACG----AAATAATGGTATGGATATTCCAT
gi|10 : tgtAGT-TCCTGGCCTCGCTATCACTGATGG-C----ATCATC-TG--CTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT-CA-A-------ATTGCAGAATTGGAGACGAAATAAATAATGGTTCTGATATTatct
gi|11 : CTTGGTACTTGTGCCATA------CTTTTAGCATCATTATT----------------CTTA--AATTCAA--------TATTCAAACTATTT--AAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC---TGAT-G-AA--TT-----AAACTtgat
gi|12 : tCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATA--AGGA----ATAA-TA-AAACTGCGAC---GGAATCGGAGAGA----AAATAATACTCTCCATATTCCA
gi|13 : TA------TTT---------TTATA----------------TTTA--CTCACAA--------AGATTGATT-ATTA---GC---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TT-----GAAa
gi|14 : GCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG---TA-TAGTA----ATATGTGCA-------AT---AGAATCCGAGACG----AAATAATGGTTCTAATATTCTAta
gi|15 : gATTTTGGGGTTTGGACAGAAC-A-----------ACTTTTTTTA-C-T
gi|16 : ccttccacccccaagATATCTGATAC-TTTTAGTTACT-TGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATAAAATCTataaaccagaactatcatatttagacaacatttcctttgtt
gi|2 : GTGGGTATTCAATCT---G----TTA--------GATTTTCCT---GAGTCATT----ATAACAGCCGATCAAT-------A-TGCA--AT-A-TCATAAATAA--TC-A-CATTTTAAGCACC-TA-T-C-----TCTTGACA---C-ATA-----AGTT--------TGGGGATGGATTAC-TTTTCTTG--ACAAGTGACGTA------TTTCT-----CGTTATTATCACAAAGTTCGGTATTTAAACATGCCA--------AGATCGATTTATTA--TG----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGT-----GTTCTT-AGT-TTAATG---------------CACAA----ATGC------ACAAATTTTGGGGGATAGGCAGAACTA-AA-------TAAA------A-TATCTT-----GTTAACTAAGAATTTTAAGATAAATCTTCAGG----GAC--C-CTTTTTC
gi|3 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacATTTTGGTATTTAGACAGAACTG------------CTTTTTTTA-T----------GCTGACTAAAAATATCCAAACAAATTT---GAA---GACAACGTTTTCTCC-ATTTC-CTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATACAC----AT-ATG-TGTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT-TA-AAATCACTAT---AGAATTGGAGATG----AAATAGTATTTTCGATATTCCATt
gi|4 : cctgccccctccaagATTTTGTT---AA---ATT----ACAACAACCGACCG-CC------A-TGTA--AT-GGT-----CTAT--TCTAATGTTCTATGCATC-AA-T-T-----TCCAGGCA---C-GCACATGTA-TTCCTGACA-TCCCG-----TTA---TCACC----ACAT---ACAAA------TTTC-------GTTATT----------------TCTA--CATGCAA--------AGATCGATTTATTAACTACATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGA----ATTAAT-G-AA--TTGAGACGAACTCGGGTATTGATGACCCCCTCCCCTCAACACAC----AACC------ACGAATTT--GGGTTT------------------------TT-------T-CCTT-----GCTAACAAAACATTTTCAAACAAATA-----------------TTTTCTCTGATTGT-CTCACCAT------------T----CCACTTTTAAAAAC-------------GATGTTAATT-GCCTCAACTCATTATAT---A---------ATTATG-TATGgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|5 : GAATATTTACTGGTATG----TTA--------GATTTTCTC---TACTTTTT----GTAACAGCCGATCG-CTATACA-A-TATA--AT-G-TCGTAGATAA--TCAA-T-TCCCGTGCATC-AA-TAT-----T--AGGTA---A-GTAGAAG-GGGTCC---TC-TCTC--TCC-CCACTTTCATTGG--ACACGTGACTTAATTGTTTTTCC-----TGTTATT----------------ATCA--CATACAAAGTTCTTCAGATCGATCTATTt
gi|6 : tgcgaccgcgagttaaaaagttagatttacgacatttgatggcagaaggcatcacaaaactaattcatatctagtaccgtttactagtattccctctaccgtgaggTGGATTTTTACTAA---GATT-TTA--------GATTCTTTC---AAGTCATT----GTTACATCCGATTG-C-------AATGTA--AC-G-------ATAT----CA-CA----AAGAATC-AAAT-TAAATATCCAGGCAAAGCAGCAAA-GGGGTTCC---CT-TCCCGAT-T-TTAT-TTCA--------AAGTGATTTACT----TTTCC-----CATTATT----------------ATCA--CATACAA--------AGTTC
gi|7 : accacaatttgttagatttccgaagtctgataacagaaggcaacagaaaactaattcacagtaggtctaacatgtattttctctatcgtataTAGATATTTACTCA---G----TTATTTTGTTAGATTTCCTC---AAGTCATTGTACATAACAAAAGATCG-CTTAGTCAG-TGTT--ATCG-T-----ATATAAT-CA-TATTTat
gi|8 : aaaataaatctgtatgatttgagattatttttcagaaagttacgagtgaatattctattcaaacctggaaccaaaaacgtgatttctgatgtttgcttgtggaaggcagcacgaaactaattcacggtacagtgtatttcctctatcctgttGTGGATTTTTACTAC---GATTTTTA--------GATTCTTTC---AAGTCATT----GTAACAACCGATCG-C------------A--AT-G-A-----GAAT----CA-AAT--------TC-AG-T-T-----TCCTGGCAAAGC--TGCATG--GTT-C---CC-TCCC--TGC-T----TTTATTTG--ACATGTGAAATA------ATTTT-----C
gi|9 : ctgatagcagaaggcaacacaaaactaattcacagtactgtgtgtttccttgatcgtacatgtatTATTTACTCA---A----CTA--------GATTTTCTTCTTGAGTCATT----ATAACAACTGACCACC-------A-TGAA--AT-A-T-----A-AT--GGCA-CATTTTATCCATCAGT-T-T-----TTCAGTCA---C-ATACATGTAGTcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 22222222 1111 5555555555555555555555555555555555555 111111111111 222222 1 11111111 44444444444 1111111 222222222222222222 33333333333333333 22222222 333333333 111 1111111 222222 11 22222 000000000000000000000000000000000000000000000 1 99999999999999999999999999999999999 777777777777777777 111 1 77777777777777777 7777777777777 1 3333333 1 222222 5555555555555 1111
lowQualScore : 5555555555 00000000 9999 0000 3333333333333333333333333333333333333 666666 1 777777777777 555555 4 5 1 77777777 99999999999 5555555 0 4 444444444444444444 88888888888888888 77 0 00000000 333333333 0 444 8 8 0 3 6 11 8888888 222222 1 8 8 11 00000 555555555555555555555555555555555555555555555 2 0 6 1 88888888888888888888888888888888888 1 1 333333333333333333 0 444 3 7 22222222222222222 3 3333333333333 0 0 0 0 0000000 8 8 3 0 22 44 0 333333 8 2222222222222 7777 1
lowQualScore : .......... ........ .... .... ..................................... ...... . ............ ...... . . . ........ ........... ....... . . .................. ................. .. . ........ ......... . ... . . . . . .. ....... ...... . . . .. ..... ............................................. . . . . ................................... . . .................. . ... . . ................. . ............. . . . . ....... . . . . .. .. . ...... . ............. .... .
lowQualScore : 7777777777 77777777 9999 6666 1111111111111111111111111111111111111 222222 9 333333333333 666666 3 1 9 00000000 33333333333 2222222 6 0 555555555555555555 44444444444444444 99 4 77777777 444444444 8 000 0 0 8 6 4 88 2222222 222222 4 0 0 00 00000 333333333333333333333333333333333333333333333 0 8 4 4 11111111111111111111111111111111111 2 2 555555555555555555 2 777 3 3 33333333333333333 7 3333333333333 7 2 0 8 2222222 6 0 8 7 88 00 0 222222 0 6666666666666 0000 4
consensus : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGATGC-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAAA----T----ACAGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
Reference ( family-2718 ) : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGATGC-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAAA----C----ATAGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
gi|1 : GTGGATATTTACGTA---G----TGA--------GATTTTCTT---GAGTCATG----ATCACAATCTACCA-C-------A-TGTATCAT-G-T-----ATAT--TTTA-CAATTTATGCATT-GA-T-C-----TCCAGACT---T-ATACATGTAGCTCC---CCCTCCCAGTG----AT-TTC--TTG--ACATGTGGCGTA------CTTGT-----C----TT----------------TTTA--CATGCAA--------TGATTGATTTATT---TGC---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACC-ATCAAT-G-AA--TT-----GAACTC-A-----AATC---------------CCCAAGCCCATGCTTTAATAC-AATTTTGGGGTTTGGGCAGAACTATAAAACTTTGTACTTTTCTTACT-TCTTGTTTAGCTAACCAAGAATTTTCATACCAATAT---GATAGCAACT-C-TTTTATCTG--TGTGCTCCCCATC-----CCTCAA---------TTTCAAAATC-------------GACACCAAGT-GCCTGAACTCGCTATATCTGATAG-T----ATGATGTTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTA--A----ATAT-TAA---------------AATCGCTGACG----AAATAATGGTATGGATATTCCAT
gi|10 : tgtAGT-TCCTGGCCTCGCTATCACTGATGG-C----ATCATC-TG--CTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT-CAAAT----T----GCAGAATTGGAGACGAAATAAATAATGGTTCTGATATTatct
gi|11 : CTTGGTACTTGTGCCATA------CTTTTAGCATCATTATT----------------CTTA--AATTCAA--------TATTCAAACTATTT--AAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC---TGAT-G-AA--TT-----AAACTtgat
gi|12 : tCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATA--AGGA----ATAA-TAAAA----CTGCGACGGAATCGGAGAGA----AAATAATACTCTCCATATTCCA
gi|13 : TA------TTT---------TTATA----------------TTTA--CTCACAA--------AGATTGATT-ATTA---GC---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TT-----GAAa
gi|14 : GCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG---TA-TAGTA----ATATGTGCA----------ATAGAATCCGAGACG----AAATAATGGTTCTAATATTCTAta
gi|15 : gATTTTGGGGTTTGGACAGAAC-A-----------ACTTTTTTTA-C-T
gi|16 : ccttccacccccaagATATCTGATAC-TTTTAGTTACT-TGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATAAAATCTataaaccagaactatcatatttagacaacatttcctttgtt
gi|2 : GTGGGTATTCAATCT---G----TTA--------GATTTTCCT---GAGTCATT----ATAACAGCCGATCAAT-------A-TGCA--AT-A-TCATAAATAA--TC-A-CATTTTAAGCACC-TA-T-C-----TCTTGACA---C-ATA-----AGTT--------TGGGGATGGATTAC-TTTTCTTG--ACAAGTGACGTA------TTTCT-----CGTTATTATCACAAAGTTCGGTATTTAAACATGCCA--------AGATCGATTTATTA--TG----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGT-----GTTCTT-AGT-TTAATG---------------CACAA----ATGC------ACAAATTTTGGGGGATAGGCAGAACTA-AA-------TAAA------A-TATCTT-----GTTAACTAAGAATTTTAAGATAAATCTTCAGG----GAC--C-CTTTTTC
gi|3 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacATTTTGGTATTTAGACAGAACTG------------CTTTTTTTA-T----------GCTGACTAAAAATATCCAAACAAATTT---GAA---GACAACGTTTTCTCC-ATTTC-CTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATACAC----AT-ATG-TGTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT-TAAAATCACT----ATAGAATTGGAGATG----AAATAGTATTTTCGATATTCCATt
gi|4 : cctgccccctccaagATTTTGTT---AA---ATT----ACAACAACCGACCG-CC------A-TGTA--AT-GGT-----CTAT--TCTAATGTTCTATGCATC-AA-T-T-----TCCAGGCA---C-GCACATGTA-TTCCTGACA-TCCCG-----TTA---TCACC----ACAT---ACAAA------TTTC-------GTTATT----------------TCTA--CATGCAA--------AGATCGATTTATTAACTACATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGA----ATTAAT-G-AA--TTGAGACGAACTCGGGTATTGATGACCCCCTCCCCTCAACACAC----AACC------ACGAATTT--GGGTTT------------------------TT-------T-CCTT-----GCTAACAAAACATTTTCAAACAAATA-----------------TTTTCTCTGATTGT-CTCACCAT------------T----CCACTTTTAAAAAC-------------GATGTTAATT-GCCTCAACTCATTATAT---A---------ATTATG-TATGgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|5 : GAATATTTACTGGTATG----TTA--------GATTTTCTC---TACTTTTT----GTAACAGCCGATCG-CTATACA-A-TATA--AT-G-TCGTAGATAA--TCAA-T-TCCCGTGCATC-AA-TAT-----T--AGGTA---A-GTAGAAG-GGGTCC---TC-TCTC--TCC-CCACTTTCATTGG--ACACGTGACTTAATTGTTTTTCC-----TGTTATT----------------ATCA--CATACAAAGTTCTTCAGATCGATCTATTt
gi|6 : tgcgaccgcgagttaaaaagttagatttacgacatttgatggcagaaggcatcacaaaactaattcatatctagtaccgtttactagtattccctctaccgtgaggTGGATTTTTACTAA---GATT-TTA--------GATTCTTTC---AAGTCATT----GTTACATCCGATTG-C-------AATGTA--AC-G-------ATAT----CA-CA----AAGAATC-AAAT-TAAATATCCAGGCAAAGCAGCAAA-GGGGTTCC---CT-TCCCGAT-T-TTAT-TTCA--------AAGTGATTTACT----TTTCC-----CATTATT----------------ATCA--CATACAA--------AGTTC
gi|7 : accacaatttgttagatttccgaagtctgataacagaaggcaacagaaaactaattcacagtaggtctaacatgtattttctctatcgtataTAGATATTTACTCA---G----TTATTTTGTTAGATTTCCTC---AAGTCATTGTACATAACAAAAGATCG-CTTAGTCAG-TGTT--ATCG-T-----ATATAAT-CA-TATTTat
gi|8 : aaaataaatctgtatgatttgagattatttttcagaaagttacgagtgaatattctattcaaacctggaaccaaaaacgtgatttctgatgtttgcttgtggaaggcagcacgaaactaattcacggtacagtgtatttcctctatcctgttGTGGATTTTTACTAC---GATTTTTA--------GATTCTTTC---AAGTCATT----GTAACAACCGATCG-C------------A--AT-G-A-----GAAT----CA-AAT--------TC-AG-T-T-----TCCTGGCAAAGC--TGCATG--GTT-C---CC-TCCC--TGC-T----TTTATTTG--ACATGTGAAATA------ATTTT-----C
gi|9 : ctgatagcagaaggcaacacaaaactaattcacagtactgtgtgtttccttgatcgtacatgtatTATTTACTCA---A----CTA--------GATTTTCTTCTTGAGTCATT----ATAACAACTGACCACC-------A-TGAA--AT-A-T-----A-AT--GGCA-CATTTTATCCATCAGT-T-T-----TTCAGTCA---C-ATACATGTAGTcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 22222222 1111 5555555555555555555555555555555555555 111111111111 222222 1 11111111 44444444444 1111111 222222222222222222 33333333333333333 22222222 333333333 111 1111111 222222 11 22222 000000000000000000000000000000000000000000000 1 99999999999999999999999999999999999 777777777777777777 111 1 77777777777777777 7777777777777 1 3333333 1 222222 4444444444444 1111
lowQualScore : 5555555555 00000000 9999 0000 3333333333333333333333333333333333333 666666 1 777777777777 555555 4 5 1 77777777 99999999999 5555555 0 4 444444444444444444 88888888888888888 77 0 00000000 333333333 0 444 8 8 0 3 6 11 8888888 222222 1 8 8 11 00000 555555555555555555555555555555555555555555555 2 0 6 1 88888888888888888888888888888888888 1 1 333333333333333333 0 444 3 7 22222222222222222 3 3333333333333 0 0 0 0 0000000 8 8 3 0 22 44 0 333333 8 6666666666666 7777 1
lowQualScore : .......... ........ .... .... ..................................... ...... . ............ ...... . . . ........ ........... ....... . . .................. ................. .. . ........ ......... . ... . . . . . .. ....... ...... . . . .. ..... ............................................. . . . . ................................... . . .................. . ... . . ................. . ............. . . . . ....... . . . . .. .. . ...... . ............. .... .
lowQualScore : 7777777777 77777777 9999 6666 1111111111111111111111111111111111111 222222 9 333333333333 666666 3 1 9 00000000 33333333333 2222222 6 0 555555555555555555 44444444444444444 99 4 77777777 444444444 8 000 0 0 8 6 4 88 2222222 222222 4 0 0 00 00000 333333333333333333333333333333333333333333333 0 8 4 4 11111111111111111111111111111111111 2 2 555555555555555555 2 777 3 3 33333333333333333 7 3333333333333 7 2 0 8 2222222 6 0 8 7 88 00 0 222222 0 4444444444444 0000 4
consensus : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGATGC-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAAA----T----ACAGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
Reference ( family-2718 ) : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGATGC-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAAA----T----ACAGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
gi|1 : GTGGATATTTACGTA---G----TGA--------GATTTTCTT---GAGTCATG----ATCACAATCTACCA-C-------A-TGTATCAT-G-T-----ATAT--TTTA-CAATTTATGCATT-GA-T-C-----TCCAGACT---T-ATACATGTAGCTCC---CCCTCCCAGTG----AT-TTC--TTG--ACATGTGGCGTA------CTTGT-----C----TT----------------TTTA--CATGCAA--------TGATTGATTTATT---TGC---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACC-ATCAAT-G-AA--TT-----GAACTC-A-----AATC---------------CCCAAGCCCATGCTTTAATAC-AATTTTGGGGTTTGGGCAGAACTATAAAACTTTGTACTTTTCTTACT-TCTTGTTTAGCTAACCAAGAATTTTCATACCAATAT---GATAGCAACT-C-TTTTATCTG--TGTGCTCCCCATC-----CCTCAA---------TTTCAAAATC-------------GACACCAAGT-GCCTGAACTCGCTATATCTGATAG-T----ATGATGTTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTA--A----ATAT-TAA---------------AATCGCTGACG----AAATAATGGTATGGATATTCCAT
gi|10 : tgtAGT-TCCTGGCCTCGCTATCACTGATGG-C----ATCATC-TG--CTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT-CAAAT----T----GCAGAATTGGAGACGAAATAAATAATGGTTCTGATATTatct
gi|11 : CTTGGTACTTGTGCCATA------CTTTTAGCATCATTATT----------------CTTA--AATTCAA--------TATTCAAACTATTT--AAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC---TGAT-G-AA--TT-----AAACTtgat
gi|12 : tCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATA--AGGA----ATAA-TAAAA----CTGCGACGGAATCGGAGAGA----AAATAATACTCTCCATATTCCA
gi|13 : TA------TTT---------TTATA----------------TTTA--CTCACAA--------AGATTGATT-ATTA---GC---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TT-----GAAa
gi|14 : GCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG---TA-TAGTA----ATATGTGCAA----T------AGAATCCGAGACG----AAATAATGGTTCTAATATTCTAta
gi|15 : gATTTTGGGGTTTGGACAGAAC-A-----------ACTTTTTTTA-C-T
gi|16 : ccttccacccccaagATATCTGATAC-TTTTAGTTACT-TGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATAAAATCTataaaccagaactatcatatttagacaacatttcctttgtt
gi|2 : GTGGGTATTCAATCT---G----TTA--------GATTTTCCT---GAGTCATT----ATAACAGCCGATCAAT-------A-TGCA--AT-A-TCATAAATAA--TC-A-CATTTTAAGCACC-TA-T-C-----TCTTGACA---C-ATA-----AGTT--------TGGGGATGGATTAC-TTTTCTTG--ACAAGTGACGTA------TTTCT-----CGTTATTATCACAAAGTTCGGTATTTAAACATGCCA--------AGATCGATTTATTA--TG----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGT-----GTTCTT-AGT-TTAATG---------------CACAA----ATGC------ACAAATTTTGGGGGATAGGCAGAACTA-AA-------TAAA------A-TATCTT-----GTTAACTAAGAATTTTAAGATAAATCTTCAGG----GAC--C-CTTTTTC
gi|3 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacATTTTGGTATTTAGACAGAACTG------------CTTTTTTTA-T----------GCTGACTAAAAATATCCAAACAAATTT---GAA---GACAACGTTTTCTCC-ATTTC-CTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATACAC----AT-ATG-TGTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT-TAAAATCACT----ATAGAATTGGAGATG----AAATAGTATTTTCGATATTCCATt
gi|4 : cctgccccctccaagATTTTGTT---AA---ATT----ACAACAACCGACCG-CC------A-TGTA--AT-GGT-----CTAT--TCTAATGTTCTATGCATC-AA-T-T-----TCCAGGCA---C-GCACATGTA-TTCCTGACA-TCCCG-----TTA---TCACC----ACAT---ACAAA------TTTC-------GTTATT----------------TCTA--CATGCAA--------AGATCGATTTATTAACTACATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGA----ATTAAT-G-AA--TTGAGACGAACTCGGGTATTGATGACCCCCTCCCCTCAACACAC----AACC------ACGAATTT--GGGTTT------------------------TT-------T-CCTT-----GCTAACAAAACATTTTCAAACAAATA-----------------TTTTCTCTGATTGT-CTCACCAT------------T----CCACTTTTAAAAAC-------------GATGTTAATT-GCCTCAACTCATTATAT---A---------ATTATG-TATGgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|5 : GAATATTTACTGGTATG----TTA--------GATTTTCTC---TACTTTTT----GTAACAGCCGATCG-CTATACA-A-TATA--AT-G-TCGTAGATAA--TCAA-T-TCCCGTGCATC-AA-TAT-----T--AGGTA---A-GTAGAAG-GGGTCC---TC-TCTC--TCC-CCACTTTCATTGG--ACACGTGACTTAATTGTTTTTCC-----TGTTATT----------------ATCA--CATACAAAGTTCTTCAGATCGATCTATTt
gi|6 : tgcgaccgcgagttaaaaagttagatttacgacatttgatggcagaaggcatcacaaaactaattcatatctagtaccgtttactagtattccctctaccgtgaggTGGATTTTTACTAA---GATT-TTA--------GATTCTTTC---AAGTCATT----GTTACATCCGATTG-C-------AATGTA--AC-G-------ATAT----CA-CA----AAGAATC-AAAT-TAAATATCCAGGCAAAGCAGCAAA-GGGGTTCC---CT-TCCCGAT-T-TTAT-TTCA--------AAGTGATTTACT----TTTCC-----CATTATT----------------ATCA--CATACAA--------AGTTC
gi|7 : accacaatttgttagatttccgaagtctgataacagaaggcaacagaaaactaattcacagtaggtctaacatgtattttctctatcgtataTAGATATTTACTCA---G----TTATTTTGTTAGATTTCCTC---AAGTCATTGTACATAACAAAAGATCG-CTTAGTCAG-TGTT--ATCG-T-----ATATAAT-CA-TATTTat
gi|8 : aaaataaatctgtatgatttgagattatttttcagaaagttacgagtgaatattctattcaaacctggaaccaaaaacgtgatttctgatgtttgcttgtggaaggcagcacgaaactaattcacggtacagtgtatttcctctatcctgttGTGGATTTTTACTAC---GATTTTTA--------GATTCTTTC---AAGTCATT----GTAACAACCGATCG-C------------A--AT-G-A-----GAAT----CA-AAT--------TC-AG-T-T-----TCCTGGCAAAGC--TGCATG--GTT-C---CC-TCCC--TGC-T----TTTATTTG--ACATGTGAAATA------ATTTT-----C
gi|9 : ctgatagcagaaggcaacacaaaactaattcacagtactgtgtgtttccttgatcgtacatgtatTATTTACTCA---A----CTA--------GATTTTCTTCTTGAGTCATT----ATAACAACTGACCACC-------A-TGAA--AT-A-T-----A-AT--GGCA-CATTTTATCCATCAGT-T-T-----TTCAGTCA---C-ATACATGTAGTcc
blockSeqs : ACGATTT TTTTGTTA CTTG GTAC CTATACAATATAATGTCGTAGATAATCA ATGTTC A AAATTAAATA AAGCAG C T T CCTGACA GATGGATTAC TCTTG A ATTGTTTTTCCTG ATCACAAAGTTCGGTAT AA AGTTCTTC AACTACATG ACC G C G T AT AATGTGC AACCGA T A A AC GAGAC GGGTATTGATGACCCCCTCCCCTCAACACACAACC A G A TAAATAAAATATCTT T G TTGAAGACAACG TGA . A CAGCCTCCCCAATTTAT T CGTGGTAGTGGTA A CTTTTA C . T TG AA C TACAGC G AACTGCGAC AAAT T
blockSeqs : GGTATG . G . CTTAGTCAGTGTTATCGTATATAATC CATTT T AATAT AAGC G A G CCTC TCCCCACT ATTGG G CTTTTAGCATCA C . . TAAC . . . T C AT AGTGG AGTT G . . . . AGTTTAATGCACAAATGC G A G TGCTTTTTTTAT T A CTTCAGGGACC CA . . T C . . CAC T . T CA AC C GA . AATCACTAT . C
blockSeqs : AAGATT . A . ATATGCAATATCATAAATAATC TATTT T AGTTT CA A T T CCCT GATTTTAT ATTTG A CTTTTCCCA T . . AGC . . . C A AA ATTGA GCC C . . . . A A TTTCCTT A A A . GC T . T CA AT . TA . ATTGC . T
blockSeqs : CTG . T . CCATGTAATGGTCTATTCT CATTT A TATC CG C T . CCC GTTA ACC T TTTCTCG T . . ATG . . . . . . . AA T . . . . . . . . . . . . . . . AAT . C
blockSeqs : CAG . A . CCATGAAATATAATGGC TTCC T AATT AG C . . . TGCT A T TTTCG A . .
blockSeqs : CAA . A . CAATGTAACGATATC AAT . AGTT CA . . . A TTT A . .
blockSeqs : A . CAATGAGAATC CA
blockSeqCons : CCATGCAATGTCGTAATAATC**************** CCCC**** GCTTAT***** ATTTG** TTTTCCCG********** AACC** G****** A***** AACGC********
originalCons : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCG-C-------A-TGTA--AT-G-T-----ATAT--TCCA-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCC---CC-TCCCGATGC-TTAC-TTCACTTG--ACATGTGACGTA------TTTCT-----CGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAGCC-ATCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAN-C----ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAAA----T----ACAGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
finalCons : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCGCCATGCAATGTCGTAATAATC----------------A-CATTTTATGCATC-GA-T-T-----TCCAGGCA---C-GTACATGTAGTTCCCC----TCCCGCTTAT-----TTCATTTG--ACATGTGACGTATTTTCCCG----------TTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAACC--TCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATAG------ATTATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGA-----ATAT-TAAAACGC--------AGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 2222222222 22222222 1111 5555555555555555555555555555 111111 222222 2222222222222222222 22222 2222222 33333333333333333 22222222 333333333 111 1111111 2222 11 22222 000000000000000000000000000000000000000000000 1 99999999999999999999999999999999999 777777777777777777 111 1 77777777777777777 7777777777777 1 3333333 3333333333 5555555555555 1111
lowQualScore : 5555555555 00000000 9999 0000 5555555555555555555555555555 66 66 6 444444 3 88 5 555555 4 5 8 0000000000000000000 3 3 3 4 5 00000 5555555 88888888888888888 77 0 00000000 333333333 0 444 8 8 0 3 6 11 8888888 0 0000 8 8 8 11 00000 555555555555555555555555555555555555555555555 2 0 6 1 88888888888888888888888888888888888 1 1 333333333333333333 0 444 3 7 22222222222222222 3 3333333333333 0 0 0 7777777 8 8 3 0 22 44 6666666666 8 3333333333333 7777 1
lowQualScore : .......... ........ .... .... ............................ .. .. . ...... . .. . ...... . . . ................... . . . . . ..... ....... ................. .. . ........ ......... . ... . . . . . .. ....... . .... . . . .. ..... ............................................. . . . . ................................... . . .................. . ... . . ................. . ............. . . . ....... . . . . .. .. .......... . ............. .... .
lowQualScore : 7777777777 77777777 9999 6666 2222222222222222222222222222 99 99 5 333333 6 44 7 666666 3 1 3 0000000000000000000 5 2 9 0 7 00000 3333333 44444444444444444 99 4 77777777 444444444 8 000 0 0 8 6 4 88 2222222 8 4444 2 0 0 00 00000 333333333333333333333333333333333333333333333 0 8 4 4 11111111111111111111111111111111111 2 2 555555555555555555 2 777 3 3 33333333333333333 7 3333333333333 7 2 0 4444444 0 0 8 7 88 00 6666666666 0 6666666666666 0000 4
consensus : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCGC-TATGC-----A--ATG---TCGTA-A-TAAT--C--ACATT-TTATGCATC-GAT-TTCCAGGCA---C-GTACATGTAGTTC-C---CN-TCCCG-TTATTTCATTTGACATGTGACGT-A-----TTTTC----CCGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAACC--TCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATA-----G-AT-TATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAGTA----ATAT-TAAAA-C----GC---AGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
Reference ( family-2718 ) : NNNGTGGATATTTACTNA---G----TTA--------GATTTTCTC---GAGTCATT----ATAACAACCGATCGC-CATGC-----A--ATG---TCGTA-A-TAAT--C--ACATT-TTATGCATC-GAT-TTCCAGGCA---C-GTACATGTAGTTC-C---CC-TCCCGCTTATTTCATTTGACATGTGACGT-A-----TTTTC----CCGTTATT----------------TTTA--CATGCAA--------AGATCGATTTATTA--TGC---TGGTCACT---TT-TT-ATAGTAGCGGTGAATGGTA--GCGAAAATGCAAGATTGAACC--TCAAT-G-AA--TT-----GAACTC-GGT-TTAATG---------------CACAA----ATGC------ACGAATTTTGGGGTTTGGGCAGAACTA-AA-------TACTTTTTTTA-T-TCTT-----GCTAACTAAGAATTTTCAAACAAATNT---GA----GAC--C-TTTTCTCCGATTGT-CTCCCCATC-----CCCCAAT----CCACTTTCAAAATC-------------GACGTTAAGT-GCCTGGACTCGCTATATCTGATA-----G-AT-TATG-TGTGCTTGTTTACCGAAAAGTTGCCCAAGTTAACGCAGAAAATGAAATCTCGTTGGACATACTAG-A----ATAT-TAAAA-C----GC---AGAATCGGAGACG----AAATAATGGTTTCGATATTCCAT
gi|1 : GTGGATATTTACGTA---G----TGA--------GATTTTCTT---GAGTCATG----ATCACAATCTACCAC--ATGT-----ATCATG---T-ATA-T-T--T--T--ACAAT-TTATGCATT-GAT-CTCCAGACT---T-ATACATGTAGCTC-C---CCCTCCCAGTGATTTC--TTGACATGTGGCGT-A-----CTT--------GTC-TT----------------TTTA--CATGCAA--------TGATTGATTTATT---TGC---TGGTCACT---TT-TT-ATAGTAGTGGTGAATGGTA--GCAAAAATGCAAGGTTGAACCA-TCAAT-G-AA--TT-----GAACTC-A-----AATC---------------CCCAAGCCCATGCTTTAATAC-AATTTTGGGGTTTGGGCAGAACTATAAAACTTTGTACTTTTCTTACT-TCTTGTTTAGCTAACCAAGAATTTTCATACCAATAT---GATAGCAACT-C-TTTTATCTG--TGTGCTCCCCATC-----CCTCAA---------TTTCAAAATC-------------GACACCAAGT-GCCTGAACTCGCTATATCTGATA-----GTAT-GATGTTGCGCTTGTTAAATGAAAAGTTGCCCAAGTTAACCCAGAAAATGTCATCTTGTTGGACATACTA--A----ATAT-TAA---------------AATCGCTGACG----AAATAATGGTATGGATATTCCAT
gi|10 : tgtAGT-TCCTGGCCTCGCTATCACTGATG-----GCAT-CATC-TG--CTTGTTTACTGAAATGTTGTCCATGTTAATGCAGAAAATGAAATCTTGTTGGAAATACTAG------ATAT-CAAAT-T----GC---AGAATTGGAGACGAAATAAATAATGGTTCTGATATTatct
gi|11 : ACTTGTGCCAT-A-----CTTTTAGCATCATTATT----------------CTTA--AATTCAA--------TATTCAAACTATTT--AAC---TGGTCACT---TT-TTCAAAGGAGTGGTGAATCATA--GTGGAAAAACAAGGTTG-GCC--T-GAT-G-AA--TT-----AAACTtgat
gi|12 : tcttggtCTCGTTTACCGAAAAGTTGCCGAA-TTAACATAGAAGATGCAATTTCATCGGACATAA-GG-A----ATAA-TAAAA-CTGCGAC---GGAATCGGAGAGA----AAATAATACTCTCCATATTCCA
gi|13 : TTATA----------------TTTA--CTCACAA--------AGATTGATT-ATTA---GC---TGATC-CT---TTGTT-ATAGTAGCAGTAAATGGTAATGTGCAAATGTAAGACTAAGTT--TGAAT-GAAA--TT-----GAAa
gi|14 : tatttGCTTGTTTACTGAAAAGTTACCATTGTTAACACAGAAAACGAGA-----TTGG---TA-TAGTA----ATATGTGCAA-------T---AGAATCCGAGACG----AAATAATGGTTCTAATATTCTAta
gi|15 : gATTTTGGGGTTTGGACAGAAC-A-----------ACTTTTTTTA-C-T
gi|16 : ccttccacccccaagATATCTGATACTTTTA-GT-TACT-TGTGCTTGTTTACTGAAAAGTTGCTCAAGTTAAAGTAGAAAATAAAATCTataaaccagaactatcatatttagacaacatttcctttgtt
gi|2 : GTGGGTATTCAATCT---G----TTA--------GATTTTCCT---GAGTCATT----ATAACAGCCGATCAA-TATGC-----A--ATA---TCATA-AATAAT--C--ACATT-TTAAGCACC-TAT-CTCTTGACA---C-ATA-----AGTTT-G---GG-GATGGATTACTTTTCTTGACAAGTGACGT-A-----TTT-C----TCGTTATTATCACAAAGTTCGGTATTTAAACATGCCA--------AGATCGATTTATTA--TG----TAGTAACT---TC-TC-ACAACAGAGGTGAAAGGCA--TTGAAGATACGAAAATGAACCGATCAACAG-AAACGT-----GTTCTT-AGT-TTAATG---------------CACAA----ATGC------ACAAATTTTGGGGGATAGGCAGAACTA-AA-------TAAA------A-TATCTT-----GTTAACTAAGAATTTTAAGATAAATCTTCAGG----GAC--C-CTTTTTC
gi|3 : tggtagcgaagggcgacgcaaaacaattcgcagtaccatatacatgtatatcatccacggtacATTTTGGTATTTAGACAGAACTG------------CTTTTTTTA-T----------GCTGACTAAAAATATCCAAACAAATTT---GAA---GACAACGTTTTCTCC-ATTTC-CTCCCC-TCAGCCTCCCCAATTTATCCATTTTCAAAATCCGTGGTAGTGGTAGGTGTTAAACAGTTTGGACTCATAATATCTAATA-----C-ACATATG-TGTACTTGTTTACCAAAGAGTTGCCCAAGTTAATGCAGAAAATGAGATCTCATTGGATATACCAGTACAGCATAT-TAAAATC----ACTATAGAATTGGAGATG----AAATAGTATTTTCGATATTCCATt
gi|4 : cctgccccctccaagATTTTGTT---AA---ATT----ACAACAACCGACCGC-CATGT-----A--ATGG--TC------TATT--CTAATGTT-CTATGCATC-AAT-TTCCAGGCA---C-GCACATGTA-TTC-CTGACA-TCCCG-TTAT--CACC--ACAT---ACAA-A-----TTT-------CGTTATT----------------TCTA--CATGCAA--------AGATCGATTTATTAACTACATGTAGTTACTACCTT-TT-GT--------TGA--GGT--------AATGCAAGATTGAA----TTAAT-G-AA--TTGAGACGAACTCGGGTATTGATGACCCCCTCCCCTCAACACAC----AACC------ACGAATTT--GGGTTT------------------------TT-------T-CCTT-----GCTAACAAAACATTTTCAAACAAATA-----------------TTTTCTCTGATTGT-CTCACCAT------------T----CCACTTTTAAAAAC-------------GATGTTAATT-GCCTCAACTCATTATAT-----------A-AT-TATG-TATGgctatcagaaccatattgataattcattcacataatgatcaattggttggggttctttttgtttatttgtt
gi|5 : GAATATTTACTGGTATG----TTA--------GATTTTCTC---TACTTTTT----GTAACAGCCGATCGC-TATACAATATA--ATG---TCGTAGA-TAAT--C--A-ATTCCCGTGCATC-AATATT--AGGTA---A-GTAGAAGGGGTCCTC---TC-TCTCCCCACTTTCATTGGACACGTGACTT-AATTGTTTTTC----CTGTTATT----------------ATCA--CATACAAAGTTCTTCAGATCGATCTATTt
gi|6 : tgcgaccgcgagttaaaaagttagatttacgacatttgatggcagaaggcatcacaaaactaattcatatctagtaccgtttactagtattccctctaccgtgaggTGGATTTTTACTAA---GATT-TTA--------GATTCTTTC---AAGTCATT----GTTACATCCGATTGC-AATGT-----A--ACGATATCACA-AAGAAT--C--AAATT-------A---AAT-ATCCAGGCAAAGCAGCAAA-GGGGTTC-C---CT-TCCCG---ATTTTATTTCAAA-GTGATTT-AC----TTTTC----CCATTATT----------------ATCA--CATACAA--------AGTTC
gi|7 : accacaatttgttagatttccgaagtctgataacagaaggcaacagaaaactaattcacagtaggtctaacatgtattttctctatcgtataTAGATATTTACTCA---G----TTATTTTGTTAGATTTCCTC---AAGTCATTGTACATAACAAAAGATCGCTTAGTC-----A--GTGTTATCGTATA-TAAT--C--ATATT-Tat
gi|8 : aaaataaatctgtatgatttgagattatttttcagaaagttacgagtgaatattctattcaaacctggaaccaaaaacgtgatttctgatgtttgcttgtggaaggcagcacgaaactaattcacggtacagtgtatttcctctatcctgttGTGGATTTTTACTAC---GATTTTTA--------GATTCTTTC---AAGTCATT----GTAACAACCGATCGC-----------A--ATG---------A-GAAT--C--AAATT---------C-AGT-TTCCTGGCAAAGC--TGCATG--GTTC-C---CT-CCCTGCTT---TTATTTGACATGTGAAATAA-----TTTTC----CC
gi|9 : ctgatagcagaaggcaacacaaaactaattcacagtactgtgtgtttccttgatcgtacatgtatTATTTACTCA---A----CTA--------GATTTTCTTCTTGAGTCATT----ATAACAACTGACCAC-CATGA-----A--AT----------A-TAATGGC--ACATT-TTATCCATCAGTT-TTTCAGTCA---C-ATACATGTAGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AATTCAAGTAATAAAATTGAAAGTTACAAAATTATCAG