lowQualScore : 222222222222222222222222222222222222
lowQualScore : 222 1 1111 11 11 111 111 1 222222222 1 1 222 6666666666666666666666666666666 1 2 22222 2222 1 5555555555 444444444 1 1 1 1 2222 222222 1 11 111 11 4444444444 2222 1 333333 1 2222 33333333333 1 1 77777777777777777777 11 1 8888888888888888888888888888 1 22 444444444444444444 1 1 1 1 1 222 3333333 1 22222 11 22222 2 55555555555555555555555555555555 000000000000000000000000000000000000 2 1 2222 222 1 333 22 1 111 1 22222 111 11 333333333 11 111 11111 111 444 11 2222222222
lowQualScore : 8 0 888 8 6 3 7777 99 2 88 1 333 8 6 222 8 0 8 777777777 4 0 0 000 4 3 2 7777777777777777777777777777777 5 0 99999 0000 3 7 6666666666 6 000000000 3 3 3 3 1111 888888 0 99 777 2 33 3333333333 7777 2 0 6 2 777777 3 0 2 2 8888 22222222222 3 3 11111111111111111111 88 7 3 7777777777777777777777777777 3 3 00 999999999999999999 3 3 2 3 3 333 0000000 3 77777 88 11111 6 6 00000000000000000000000000000000 4 777777777777777777777777777777777777 0 5 4444 4 666 3 7 2 111 77 0 111 0 8 8 00000 444 8 0 8 8 11 8 777777777 0 8 0 11 444 44444 5 8 8 8 111 888 1 99 999 8888888888
lowQualScore : . . ... . . . .... .. . .. . ... . . ... . . . ......... . . . ... . . . ............................... . . ..... .... . . .......... . ......... . . . . .... ...... . .. ... . .. .......... .... . . . . ...... . . . . .... ........... . . .................... .. . . ............................ . . .. .................. . . . . . ... ....... . ..... .. ..... . . ................................ . .................................... . . .... . ... . . . ... .. . ... . . . ..... ... . . . . .. . ......... . . . .. ... ..... . . . . ... ... . .. ... ..........
lowQualScore : 0 6 444 0 0 0 0000 88 8 66 4 888 0 6 222 0 4 0 222222222 0 0 0 555 0 0 5 5555555555555555555555555555555 5 0 55555 0000 3 3 0000000000 7 000000000 3 3 3 3 2222 222222 0 00 555 5 88 8888888888 0000 5 0 5 5 888888 2 0 5 5 3333 00000000000 3 3 77777777777777777777 33 3 3 0000000000000000000000000000 7 3 00 000000000000000000 3 3 3 3 3 333 7777777 3 77777 33 00000 7 7 00000000000000000000000000000000 0 555555555555555555555555555555555555 0 5 5555 0 555 3 3 5 222 55 0 000 0 0 0 00000 000 0 8 0 0 00 0 222222222 8 0 8 00 000 66666 6 0 0 0 000 888 0 00 888 5555555555
consensus : GTTGT-ATAACAGCCCTAGCTTANATTA-TTCAATCACCCCAGTCTCTAGATG--GGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CC-CGTCAT-A-GG-CCACGCAAGTGACNCAA-CCCACACAGTA---AAAANTG-TT-AGTGGCCAACCANAANACATAACCTAAATTAAATGAGTTGCCAATAACTGCCCATANCCTTATGTTGTTGGGAAGAATCAGAGGGTAA--CTGGG-CATCCC-T-AC-----AGGCTCAA-----C-C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGACTTGC-AG-GCCATGCT---GCTGTTTGG--GTA----------CTCCAA--TTTNA-TTTCCGCTGCCCCTC--NG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GCG-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTT----C-----GGTATGGTTCGNT-GAATG-AAGCAGAAAG-----AAA-TA-T--A--TA-TTAGC-CAGGAAA-CGG-AT---TACATTTTA-AT---NAC-TGC---A-CACA--TAA-C-A-AACAG-GTTGGTAATACTTNTAATNACAAANTTTATTGCCTTATCGGGANAGGTATGCAATCTCGTTTTAGACGCTAAGTCATAGGCTTTTACGACTTGAAAGGGGAAAAANTTGCTGCTGTTGGGGAATCG-AACCCCGGG--TCGCCTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-AAC-CA-A--ACTT-TCCTAT----AT-ATTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTACACTAGA--ACGATACCGC---TCAN-N-CAAACTTTCCTATATAT
Reference ( gi|5 ) : GTTGT-ATAACAGCCCTAGCT--GATTA-T-CAATTACCCCAGTCTCTAGA-G--GGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CC-CGACAT-A-GG-CCACGCAAGTGACACAA-CCCAC-CA--A---AAAAATG-TT-AGTGGCCAATCAAAAAACATAACTTAA--TAA-TGAGTTGCCA-TA-CTG--CATA--CTTATGTTGTT-GGAA--AT-AGAGGGTAG--TTGGG-CATCCC---AC-----AGGCTCAA-----C-C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGC-AG-TTCATGCT---GCTGTTTGG--GTA----------CTCCAA--TATGA-TTTCCGCTGCCCCTC--TG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GCG---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCT----C-----GGTATGGTTCGGT-GAATG-AAGCAGAAAG-----AAA-TA-TA-A--TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-AT---AAC-TGC---A-CACA--TAA-C-A-AACAG-GTTGGTA----TTTTAA-GACAAAA--TA-TGCC--A--GGAATAGGTA-------T-GTTTT----------------------ACGA-TTGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGG---TCGTTTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-AAC-CA-A--ACTT-TCCTAT----AT-ATTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTA---TNGA--ACGATACCGC---TCAA-C-CAAACTTTCCTATATAT
gi|1 : GTTGTTATAA-AGCCCTAGCT--GATTAAT-CAATTACCCCAGTCTCTAGA-GCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CC-CGACATTA-GG-CTACGCAAGTGAC-CAACCCCAC-CA--A---AGAAATG-TT-AGTGGCCAATCAAAAAA-ATAACTTAA--T-A-TGAGTT-CC--TA-CTGCCCATATCTTTATG-TGTTGGGAA--AT-AGAGGGTAGCTTTGGG-C-TCCC---AC-----A-GCTCAA-----C-C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT-G--GTA----------CTCCAA--T-TGATTTTCCG-TGCCCCTC--TGT-TTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAA-TTATTGG-T-G---CAA-GT--CG---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTT----C-----GGTATGGTTCGGT-GAATGAAAGCAGAAAG-----AAA-TA-T--A--TA-TTAGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---A-CACA--TAACC-A-AACAG-GTT-GTA----TTTT-A-GACAAAATTTATTGCC--ATCAGGATAGGTA-------TCGTTTT----------------------ACGA-TTG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC-G---TCG--TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAAACACA-A--ACTT-TCCTATA---ATAATTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAGC-TAACATT-TTATACTAGA--ATGATA
gi|3 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTAT-AGAACAGCCCTAGCTTAAATTA-TTCAATCACCCCAGTCTCTAGATG--GGCACA-AGCGCATTTTCTTT--GTCGAAAATACTC-TCTCGTCAT-A-GGGCCACGAAAGTGACCAAA-CCGACACAGTA---AAAATTG-TTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG--CATAA-CTTATGTTGTT-GGAAGAATCAGAGGGTAA--CTGGGACATGCCTT-AC-----AGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGACA------GACTGCC-AG-GTCATGCTCTGACTGTTTGGCGATA----------CTCCAA--TCTGA-TTTCCGTTGCCC-TCAATT--TT-C-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAA-TTA-TGG-T-GCTCC-ATGTAGCGTTTTTTCCTACTCCGGCTCACTCG-------GA--TTT-T----CGCCAAGGTATGGTTCGATAGAATG-AAGCAGAAGA-----AAACTA-TATATCTA-TTAGC-CAGGAAATCGG-AT---TACATTTTA-AG---CAC-TGCACAA-CACA--TAA-C-ACAACAGAGTTGtactatgcaaactatcgcatgataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|12 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTGT-ATAACAGCCCTAGTT--CATTG-T-CAATCACCCCAGTCTCTAGA-G--GGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CC-CGACAT-A-GG-CCACGCAAGTGGCACAA-CCCAC-CA--AAACAAAAATG-TT-AGTGGCCAATCAAAAAACATAcaacactatacaaaaattgatcaagaaaaggtcaaatggggcattgtgtttaaatttaggcaagtctggctttttacgattgtgaaaggag
gi|6 : gctaggtctttaGTTGT-ATAACAGTCCTAGCT--CATTA-T-CAATCACCCCAGTCTCTAGA-G--AGGACA-AGCGCATTTTCTTTA-GACGACCATTTT--CC-CGTCAT-T-GG-CCACGCAAGTGACACAA-CCCAC-TA--A---AAA
gi|2 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaGTTAT-AGAACAGCCCTAGCTTAAATTA-TTCAATCACCCCAGTCTCTAGATG--GGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCT-CGTCAT-AGGG-CCACGAAAGTGACCAAA-CCGACACAGTA---AAAATTGTTT-AGTGG---ACCATAACACAT
gi|7 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttAGGTTAA--CTGGG-CATCTCGTAACTTTTAAGTCTCAA-----C-CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGC-AT-GCCATGCT---GCTGTTTGG--GTATTTAGATCCACTCAAAGTTTTTA-TTTCCGCTGCCCCTC--AGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAGTTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTTCATGC-----GTTGTTGTTACTT-GAAT----GCAGAAAGTTACCAAG-TATTC-A--TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-AT---AAC-TGC---ACCACATTTAA-CAA-AACAGCGTTGGTAATACTTATAATCATAAAC--TA-TGCCTTA--GGAAAAGGTATGCAATCT-GTTTTAGACGCTAAGTCATAGGCTTTTACGACTTGAAAGGGG----ATTTGCTGCTG-T-AGGAATCGAAACCCCGGGTCTCG-CTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-AAC-CA-ATGATCG-GCCTATTGGGAC--TTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAGCTT-ACA-TCTTACC-TAGAGTATGAT---GT---TCAT-G-CAAACT
gi|16 : taGCGT----AGACA-----AGACTTGC-AG-GCCATGCT---GCTGTTTGG--GTA----------GTCCAA--TTTTA-TTTCCGCTGCCCCTC--AG--TTAC-TCGCCTTACcccggcattgtattacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|8 : atcGGAATCG-A-CTCCGAGA-TCGCCCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-A---CACA--ATTTATCTTGA----CT-CTGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGC-T-
gi|4 : CGG---TCGTCTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-AAC-CA-A--ACTT-TCCTAG----AG-GTTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAGC-T-ACA-T-CTACACTAAAT-ATGATA-TAC---T-AT-G-CAAACTCTCGCATGTATctacacctttgattattttttttgctatgatatatatttgttcaaaccccgctgtatacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
gi|9 : AA-C-GATA-----CCGC---TC-AAC-CA-A--ACTT-TCCTAT----AT-ATTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTA---Tacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|1 : GA--ACGATACCGCATTTCAAACACAAACTTTCCTATAactagatatgatatactatgcaaactatcgcatgatacacaaaccatttcatgcatttgacggttttaatggggaatgttatggcagcgttacatatacctattttatcattttttttttctttttctttttttccctctttctttttgcaatataaaaaacattacttaatagcttatctatcgagatagaaagttaatcatagataaagggttgttgcaaaattaacgtgtacatgtgtcgcacaaatgaataataatgtattgtaacaagatggctaaaactgccgtacacaacagaacatgcaacgatcgatttaagtacgatttctttgccatcgacagttaaaataatatatatcttgctacaatatcctaaaacaattgaaataagtg
gi|9 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttgttgttataaagccctagctgattaatcaattaccccagtctctagagcgggcacttagcgcatttcctttaagtcgaaaattttccccgacattaggctacgcaagtgaccaaccccaccaaagaaatgttagtggccaatcaaaaaaataacttaatatgagttcctactgcccatatctttatgtgttgggaaatagagggtagctttgggctcccacagctcaaccctgttgccacccgctactgcgtagactagatttgctagtttcatgctgctgtttggtactccaattgattttccgtgcccctctgtttacttcgcttacccccttcgttgtgcataaattattggtgcaagtcgttaccttccggccctggagttttttcggtatggttcggtgaatgaaagcagaaagaaatatatattagctcagaaaacggtattagtacattttatattaagacttgcacacataaccaaacaggttgtattttagacaaaatttattgccatcaggataggtatcgttttacgattgaaggggaaaaaattgctgctattggggaatcgaacctcgtcgtagtttgctaatcccaA--ACGATACCGC---TCAA-C-CAAACTTTCCTATATATataattccaattggaaataattaaaccaaaaaagaaagtaaaacagctaacattttatactagaatgatatactatgcaaactatcgcatgataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|14 ): AAGTAACACAGCACATCTACATTCTATGCAAACTCCCGCATGTATACACAAACCATTTCATGCATTTGACGGTTTTCATTGGGTAATGTTATGGCAGCGTTACCTAGGCCTATTTTTTTTTTTTTTTT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 1 22 11 1 111 22222 1 111 333333 3333 22 22 44444 11 1 1 555555555 11 2222 1 1 1 1 1 1111 222222 11 111 11 3333333333 11 22 2222 111 111 1 111 333333333333333333333 11 1 1 3333333 11 1 3333 1 11 22222 1 3333333 1 1 1 1 1 111 1 2222 111 1 11 1 1 1 2 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 22 1 1 11 11111 111 222222222 111 111 111 22 3333333
lowQualScore : 6 111 5 00 6 44 3 4 555 33 99999 6 1 6 000 1 1 0 555555 6 7777 11 99 7 6 00000 33 0 3 0 111111111 2 8 33 1111 0 0 0 0 0 7777 666666 11 444 11 5555555555 11 1 3 1 77 8 1111 111 777 0 111 111111111111111111111 33 3 0 0 2222222 33 0 8888 1 0 33 55555 0 6666666 0 0 0 0 0 777 0 1 1111 777 0 33 0 0 0 0 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 3 7 1 0 22 0 3 5 8 44 8 8 8 8 6 6 66666 111 6 6 6 99 6 555555555 6 99 111 111 7 3 6 222 6 6 66 77 2 4444444 22 7 2
lowQualScore : . ... . .. . .. . . ... .. ..... . . . ... . . . ...... . .... .. .. . . ..... .. . . . ......... . . .. .... . . . . . .... ...... .. ... .. .......... .. . . . .. . .... ... ... . ... ..................... .. . . . ....... .. . .... . . .. ..... . ....... . . . . . ... . . .... ... . .. . . . . . ..................................................................................... ... . . . . .. . . . . .. . . . . . . ..... ... . . . .. . ......... . .. ... ... . . . ... . . .. .. . ....... .. . .
lowQualScore : 7 777 5 55 7 00 3 0 333 55 77777 7 0 0 666 0 0 7 333333 7 0000 77 00 3 7 33333 88 0 2 0 888888888 5 8 88 2222 0 0 0 0 0 0000 000000 00 000 00 0000000000 00 0 2 0 00 0 2222 000 555 0 000 555555555555555555555 88 2 0 0 5555555 88 0 8888 0 0 22 00000 0 0000000 0 0 5 0 0 555 0 0 2222 555 0 88 0 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 2 3 0 7 33 0 2 0 0 44 0 0 0 0 7 7 77777 777 7 7 7 22 7 777777777 7 22 777 777 3 2 7 555 7 7 88 00 8 2222222 00 8 5
consensus : GTTGT-ATAACAGCCCTAGCT--NATTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTTAA--TAA-TGAGTTGCCA-TA-CTGC-CATA--CTTATGTTGTTGGGAA--ATCAGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGTA----------CTCCAA--TTTNATTTCCGCTGCCCCTCAGT-TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAATT-A-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTT-C--G-GGTATGGTTCGGT-GAATG-AAGCAGAAAG-----AAA-TAT--A----TATT-AGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---AC-ACAT--AA-CA-AA-CAG-GTTGGTAACACTTTTAATGACAAAAT-TATTGCC--ATC-GGAANAGGT---ATG-GGC-TCGT-TTTAGAC----GC-AAGTC-TGG-CTTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTACACTAGAT-ATGATA-TACTCATGCAAACTNTCNCATGTAT
Reference ( family-2669 ) : GTTGT-ATAACAGCCCTAGCTTANATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGTCAT-A-GGCCACGCAAGTGACNCAACCCACACAGTA-AAAANTG-TTAGTGGCCAACCANAANACATAACCTAAATTAAATGAGTTGCCAATAACTGCCCATANCCTTATGTTGTTGGGAAGAATCAGAGGGTAACT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGTA----------CTCCAA--TTTNATTTCCGCTGCCCCTCNG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAATT-A-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTT-C----GGTATGGTTCGNT-GAATG-AAGCAGAAAG-----AAA-TAT--A----TATT-AGC-CAGGAAA-CGG-AT---TACATTTTA-ATNA----CTGC---AC-ACAT--AA-CA-AA-CAG-GTTGGTAATACTTNTAATNACAAANTTTATTGCCTTATC-GGGANAGGT---ATGCAATCTCGT-TTTAGAC----GCTAAGTCATAGGCTTTTACGACT-TGAAAGGGGAAAAANTTGCTGCTGTTGGGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTACACTAGA--ACGATACCGCTCANNCAAACTTTCCTATATAT
gi|1 : GTTGTTATAA-AGCCCTAGCT--GATTAATCAATTACCCCAGTCTCTAGAGCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CCCGACATTA-GGCTACGCAAGTGACCAACCCCAC-CA--A-AGAAATG-TTAGTGGCCAATCAAAAAA-ATAACTTAA--TA--TGAGTTCCTA----CTGCCCATATCTTTATGT-GTTGGGAA--AT-AGAGGGTAGCTTTGGG-C-T-CCC---------ACAG-CTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT---GGTA----------CTCCAA--TTGATTTTCCG-TGCCCCTCTGT-TTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAATT-ATTGG-T-G---CAA-GT--C-G---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTT-C----GGTATGGTTCGGT-GAATGAAAGCAGAAAG-----AAA-TAT--A----TATT-AGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---AC-ACAT--AACCA-AA-CAG-GTT-GTA----TTTTA--GACAAAATTTATTGCC--ATC-AGGATAGGT---A-------TCGT-T--------------------------TTACGA-T-TG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC--G-TCG---TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAA-ACACAA--ACTT-TCCTATAATAA----TTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAGC-TAACATT-TTATACTAGA--ATGATA-TACT-ATGCAAACTATC
gi|12 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTGT-ATAACAGCCCTAGTT--CATTGT-CAATCACCCCAGTCTCTAGA--GGGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CCCGACAT-A-GGCCACGCAAGTGGCACAACCCAC-CAAAACAAAAATG-TTAGTGGCCAATCAAAAAACATAgcatgataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|16 : gctaggtctttaGCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGTA----------GTCCAA--TTTTATTTCCGCTGCCCCTCAG--TTAC-TCGCCTTAC
gi|2 : atcGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACAT
gi|3 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG--CATAA-CTTATGTTGTT-GGAAGAATCAGAGGGTAACT--GGGACATGCCT--------TACAGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGAC------AGACTGCCAGG--TCATGCTCTGACTGTTTGGCGATA----------CTCCAA--TCTGATTTCCGTTG-CCCTCAAT-TTTC-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAATT-A-TGG-T-GCTCC-ATGTAGC-GTTTTTTCCTACTCCGGCTCACTCG-------GA--TTTTCGCCAA-GGTATGGTTCGATAGAATG-AAGCAGAAGA-----AAACTAT--ATATCTATT-AGC-CAGGAAATCGG-AT---TACATTTTA-AGCA----CTGCACAAC-ACAT--AA-CACAA-CAGAGTT-GCAACACT----AT-ACAAAA---ATTG----ATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGC-AAGTC-TGGCTTTTTACGATTGTGAAAGGAG
gi|4 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGG-TCGT-CTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-A-AC-CAA--ACTT-TCCTAG-AG-G----TTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAGC-T-ACA-T-CTACACTAAAT-ATGATA-TACT-ATGCAAACTCTCGCATGTAT
gi|5 : cGTTGT-ATAACAGCCCTAGCT--GATTAT-CAATTACCCCAGTCTCTAGA--GGGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CCCGACAT-A-GGCCACGCAAGTGACACAACCCAC-CA--A-AAAAATG-TTAGTGGCCAATCAAAAAACATAACTTAA--TAA-TGAGTTGCCA-TA-CTGC--ATA--CTTATGTTGTTGGAAA----TAGAGGGTAGTT--GGG-CAT-CCC---------ACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGT--TCATGCT---GCTGTTTG--GGTA----------CTCCAA--TATGATTTCCGCTGCCCCTCTG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAATT-A-TGG-T-G---C-A-GT-GC-G---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCT-C----GGTATGGTTCGGT-GAATG-AAGCAGAAAG-----AAA-TATA-A----TATT-AGC-CAGAAAA-CGG-AT---TACATTTTA-ATAA----CTGC---AC-ACAT--AA-CA-AA-CAG-GTTGGTA----TTTTAA-GACAAAA--TA-TGCC--A---GGAATAGGT---AT--------GT-TTTA--------------------------CGA-T-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCC-GG-TCGT-TTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTA---TNGA--ACGATACCGCTCAACCAAACTTTCCTATATATacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|6 : GTTGT-ATAACAGTCCTAGCT--CATTAT-CAATCACCCCAGTCTCTAGA-GAGG-ACA-AGCGCATTTTCTTTA-GACGACCATTTTC-CC-GTCAT-T-GGCCACGCAAGTGACACAACCCAC----TA-AAAA
gi|7 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaAGGTTAACT--GGG-CAT-CTCGTAACTTTTA-AGTCTC--AAC----CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGCATG--CCATGCT---GCTGTTTG--GGTATTTAGATCCACTCAAAGTTTTTATTTCCGCTGCCCCTCAGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAG-TTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTT-CATGCGTTGTTGTTACTT-GAATG----CAGAAAGTTACCAAG-TATTCA----TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-ATAA----CTGC---ACCACATTTAA-CA-AAACAGCGTTGGTAATACTTATAATCATAAACT--AT-GCCTTA---GGAAAAGGT---ATGCAATCT-GT-TTTAGAC----GCTAAGTCATAGGCTTTTACGACT-TGAAAGGGG----ATTTGCTGCTGT--AGGAATCGAAACCCCGGG-TCTCGCTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-A-AC-CAATGATCG-GCCTAT--T-GGGACTTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAGCTT-ACA-TCTTAC-CTAGAGTATGAT---GTTCATGCAAACT
gi|8 : taGGAATCG-A-CTCCGAGATCGC-CCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-ACAC---A--ATTTATCTTGA-CT-C----TGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGC-------T-CTACACcccggcattgtattacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|9 : AA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAGC-T-ACA-T-TTATACTAGAT-ATGATA-TACT-ATGCAAACTATCctttgattattttttttgctatgatatatatttgttcaaaccccgctgtatacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|14 ): AAGTAACACAGCACATCTACATTCTATGCAAACTCCCGCATGTATACACAAACCATTTCATGCATTTGACGGTTTTCATTGGGTAATGTTATGGCAGCGTTACCTAGGCCTATTTTTTTTTTTTTTTT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 11 1 22 11 1 111 22222 1 111 1 11 2222 2222222222 111 2 11 1 1 555555555 11 2222 1 1 1 1 1 1111 222222 11 111 11 3333333333 11 1111 2222 111 111 1 1 1 333333333333333333333 11 1 1 333333333333 44444 1 1 1 1 22222 1 3333333 1 1 1 1 111 1 2222 11111 11 1 111 2 1 444444444444 1 33333 111 9999999999999999999999999999999999999999999 222 1 1 1 11 11111 111 222222222 111 111 11 11 222222222222 1
lowQualScore : 6 1 88 5 22 6 44 3 1 555 22 33333 6 1 0 0 000 1 0 3 88 7 6 6 5555 6666666666 7 666 3 33 0 3 0 111111111 2 8 33 1111 0 0 0 0 0 7777 666666 11 444 11 5555555555 11 1 3 3333 8 1111 111 777 0 0 0 111111111111111111111 33 3 0 0 666666666666 00000 2 0 0 0 0 55555 0 6666666 0 0 7 0 0 777 0 1 1111 88888 33 0 111 0 5 666666666666 0 22222 2 555 1 9999999999999999999999999999999999999999999 000 3 7 7 3 0 3 5 8 44 8 8 8 8 6 6 66666 111 6 6 6 99 6 555555555 6 99 111 111 7 3 6 99 6 6 55 6 55 555555555555 99 6 1 7 1 77 6
lowQualScore : . . .. . .. . .. . . ... .. ..... . . . . ... . . . .. . . . .... .......... . ... . .. . . . ......... . . .. .... . . . . . .... ...... .. ... .. .......... .. . . .... . .... ... ... . . . ..................... .. . . . ............ ..... . . . . . ..... . ....... . . . . . ... . . .... ..... .. . ... . . ............ . ..... . ... . ........................................... ... . . . . . . . . .. . . . . . . ..... ... . . . .. . ......... . .. ... ... . . . .. . . .. . .. ............ .. . . . . .. .
lowQualScore : 7 0 33 5 88 7 00 3 0 333 00 55555 7 4 8 6 666 4 6 3 33 3 7 7 0000 7777777777 3 333 3 88 0 2 0 888888888 5 8 88 2222 0 0 0 0 0 0000 000000 00 000 00 0000000000 00 0 2 2222 0 2222 000 555 0 0 0 555555555555555555555 88 2 0 0 555555555555 22222 5 0 0 0 0 00000 0 0000000 0 0 0 0 0 555 0 0 2222 55555 88 0 000 0 0 888888888888 0 88888 5 888 0 8888888888888888888888888888888888888888888 000 2 3 3 3 0 2 0 0 44 0 0 0 0 7 7 77777 777 7 7 7 22 7 777777777 7 22 777 777 3 2 7 22 7 7 88 7 22 888888888888 22 7 7 7 0 77 7
consensus : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---AT-G-G--TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATG--ATA-TACTCATGCAAACTCTC-GCA-TGTAT
Reference ( family-2669 ) : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AATCAGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-TTATTGCCATC-GGAANAGGT---AT-GGGC-TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATG--ATA-TACTCATGCAAACTNTC-NCA-TGTAT
gi|1 : GTTGTTATAA-AGCCCTAGCTGA--TTAATCAATTACCCCAGTCTCTAGAGCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CCCGACATTA-GGCTACGCAAGTGACCAACCCCAC-CA--A-AGAAATGTT-AGTGGCCAATCAAAAAA-ATAACTT-AAT--A-TGAGTT-CC--T-ACTGCCCAT-ATCTTTATGT-GTTGGGA-AAT-AGAGGGTAGCTTTGGG-C-T-CCC---------ACAG-CTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT---GGT----------ACTCCAA--TTGATTTTCCG-TGCCCCTCT-GTTTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAA-TTATTGG-T-G---CAA-GT--C-G---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTTC-----GGTATGGTTCGGT-GAA-TGAAA-GCAGAAAG-----AAA-TAT--A----TA-TTAGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---A-CACA--TAACC-A-AACAG-GTT-GTA----TTTTA--GACA-AAATTTATTGCCATC-AGGATAGGT---A-------TC-G----------------------------TTTTACGA-T-TG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC--G-TCG---TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAA-ACACAA--ACTT-TCCTATAATAA----TTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAG--C-TAACAT-T-TTATACTA--------GA--ATG--ATA-TACT-ATGCAAACTATC-GCA-TG
gi|12 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTGT-ATAACAGCCCTAGTTCA--TTGT-CAATCACCCCAGTCTCTAGA--GGGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CCCGACAT-A-GGCCACGCAAGTGGCACAACCCAC-CAAAACAAAAATG-TTAGTGGCCAATCAAAAAACATAataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|16 : gctaggtctttaGCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGT----------AGTCCAA--TTTTATTTCCGCTGCCCCTCA-G-TTAC-TCGCCTTAC
gi|2 : atcGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACAT
gi|3 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG-C-ATAAC--TTATGTTGTTGGAAGAATCAGAGGGTAACT--GGGACATGCCT--------TACAGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGAC------AGACTGCCAGG--TCATGCTCTGACTGTTTGGCGAT----------ACTCCAA--TCTGATTTCCGTTG-CCCTCA-ATTTTC-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAA-TTA-TGG-T-GCTCC-ATGTAGC-GTTTTTTCCTACTCCGGCTCACTCG-------GA---TTTTCGCCAAGGTATGGTTCGATAGAA-TG-AA-GCAGAAGA-----AAACTAT--ATATCTA-TTAGC-CAGGAAATCGG-AT---TACATTTTA-AGCA----CTGCACAA-CACA--TAA-C-ACAACAGAGTT-GCAACACT----AT-ACA-AAA---ATTG--ATCAAGAAAAGGTCAAATGGGGCATT-GTGTTTAAATTTAGGC-AAGTC-T-GGCTTTTTACGATTGTGAAAGGAG
gi|4 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGG-TCGT-CTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-A-AC-CAA--ACTT-TCCTAG-AG-G----TTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-CTACACTA--------AA-TATG--ATA-TACT-ATGCAAACTCTC-GCA-TGTAT
gi|5 : cGTTGT-ATAACAGCCCTAGCTGA--TTAT-CAATTACCCCAGTCTCTAGA--GGGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CCCGACAT-A-GGCCACGCAAGTGACACAACCCAC-CA--A-AAAAATGTT-AGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGC--AT-AC--TTATGTTGTTGG-A-AAT-AGAGGGTAGTT--GGG-CAT-CCC---------ACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGT--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TATGATTTCCGCTGCCCCTCT-G-TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCTC-----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TATA-A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATAA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTA----TTTTAA-GACA-AAA--TA-TGCCA---GGAATAGGT---AT-G------------------------------------TTTTACGA-T-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCC-GG-TCGT-TTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTA---TN--------GA--ACG--ATACCGCTCAACCAAACTTTC-CTA-TATATacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|6 : GTTGT-ATAACAGTCCTAGCTCA--TTAT-CAATCACCCCAGTCTCTAGA-GAGG-ACA-AGCGCATTTTCTTTA-GACGACCATTTTC-CC-GTCAT-T-GGCCACGCAAGTGACACAACCCAC----TA-AAAA
gi|7 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaAGGTTAACT--GGG-CAT-CTCGTAACTTTTA-AGTCTC--AAC----CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGCATG--CCATGCT---GCTGTTTG--GGTATTTAGATCCACTCAAAGTTTTTATTTCCGCTGCCCCTCAGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAG-TTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTTCA----TGCGTTGTT--GT-TACTTG-AATGCAGAAAGTTACCAAG-TATTCA----TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-ATAA----CTGC---ACCACATTTAA-CAA-AACAGCGTTGGTAATACTTATAAT--CATAAA-CTA-TGCCTTA-GGAAAAGGT---AT-GCAA-TCTGT-TTTAGAC----GCTAAGTCATAGGC-TTTTACGACT-TGAAAGGGG----ATTTGCTGCTG-T-AGGAATCGAAACCCCGGG-TCTCGCTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-A-AC-CAATGATCG-GCCTAT--T-GGGACTTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAG--CTT-ACA--TCTTAC-CTA--------GAGTATG--ATG-T--TCATGCAAACTCCCGGCATTGTAT
gi|8 : taGGAATCG-A-CTCCGAGATCGC-CCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-ACAC---A--ATTTATCTTGA-CT-C----TGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGCTC-T-ACACCT-TTG-ATTATTTTTTTTGC-TATGATATA-TATTTGTTCAAAC-CCC-GC--TGTATtacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|9 : AA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTATACTA--------GA-TATG--ATA-TACT-ATGCAAACTATC-GCA-TGacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|14 ): AAGTAACACAGCACATCTACATTCTATGCAAACTCCCGCATGTATACACAAACCATTTCATGCATTTGACGGTTTTCATTGGGTAATGTTATGGCAGCGTTACCTAGGCCTATTTTTTTTTTTTTTTT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 22 11 1 111 22222 1 111 1 11 2222 2222222222 111 1 11 1 1 555555555 11 2222 1 1 1 1 1 1111 222222 11 111 11 3333333333 11 1111 2222 111 111 1 1 1 333333333333333333333 11 1 1 333333333333 44444 1 1 1 1 22222 1 3333333 1 1 1 1 111 1 2222 11111 11 1 111 2 1 444444444444 1 33333 111 999999999999999999999999999999999999999999999 222 1 1 1 11 11111 111 222222222 111 111 11 11 222222222222 2
lowQualScore : 6 1 88 5 22 6 44 3 1 555 22 33333 6 1 0 0 000 1 0 3 88 7 6 6 5555 6666666666 7 666 3 33 0 3 0 111111111 2 8 33 1111 0 0 0 0 0 7777 666666 11 444 11 5555555555 11 1 3 3333 8 1111 111 777 0 0 0 111111111111111111111 33 3 0 0 666666666666 00000 2 0 0 0 0 55555 0 6666666 0 0 7 0 0 777 0 1 1111 88888 33 0 111 0 5 666666666666 0 22222 2 555 1 777777777777777777777777777777777777777777777 000 3 7 7 3 0 3 5 8 44 8 8 8 8 6 6 66666 111 6 6 6 99 6 555555555 6 99 111 111 7 3 5 77 999 33 5 00 888888888888 77 555 0 5 5
lowQualScore : . . .. . .. . .. . . ... .. ..... . . . . ... . . . .. . . . .... .......... . ... . .. . . . ......... . . .. .... . . . . . .... ...... .. ... .. .......... .. . . .... . .... ... ... . . . ..................... .. . . . ............ ..... . . . . . ..... . ....... . . . . . ... . . .... ..... .. . ... . . ............ . ..... . ... . ............................................. ... . . . . . . . . .. . . . . . . ..... ... . . . .. . ......... . .. ... ... . . . .. ... .. . .. ............ .. ... . . .
lowQualScore : 7 0 33 5 88 7 00 3 0 333 00 55555 7 4 8 6 666 4 6 3 33 3 7 7 0000 7777777777 3 333 3 88 0 2 0 888888888 5 8 88 2222 0 0 0 0 0 0000 000000 00 000 00 0000000000 00 0 2 2222 0 2222 000 555 0 0 0 555555555555555555555 88 2 0 0 555555555555 22222 5 0 0 0 0 00000 0 0000000 0 0 0 0 0 555 0 0 2222 55555 88 0 000 0 0 888888888888 0 55555 5 888 0 222222222222222222222222222222222222222222222 000 2 3 3 3 0 2 0 0 44 0 0 0 0 7 7 77777 777 7 7 7 22 7 777777777 7 22 777 777 3 2 7 99 444 66 7 33 666666666666 99 999 9 7 7
consensus : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATG--ATA-TACT-ATGCAAACTCCC-GCA-TGTAT
Reference ( family-2669 ) : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATG--ATA-TACTCATGCAAACTCTC-GCA-TGTAT
gi|1 : GTTGTTATAA-AGCCCTAGCTGA--TTAATCAATTACCCCAGTCTCTAGAGCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CCCGACATTA-GGCTACGCAAGTGACCAACCCCAC-CA--A-AGAAATGTT-AGTGGCCAATCAAAAAA-ATAACTT-AAT--A-TGAGTT-CC--T-ACTGCCCAT-ATCTTTATGT-GTTGGGA-AAT-AGAGGGTAGCTTTGGG-C-T-CCC---------ACAG-CTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT---GGT----------ACTCCAA--TTGATTTTCCG-TGCCCCTCT-GTTTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAA-TTATTGG-T-G---CAA-GT--C-G---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTTC-----GGTATGGTTCGGT-GAA-TGAAA-GCAGAAAG-----AAA-TAT--A----TA-TTAGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---A-CACA--TAACC-A-AACAG-GTT-GTA----TTTTA--GACA-AAATTTATTGCCATC-AGGATAGGT---A---------TC-G----------------------------TTTTACGA-T-TG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC--G-TCG---TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAA-ACACAA--ACTT-TCCTATAATAA----TTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAG--C-TAACAT-T-TTATACTA--------GA--ATG--ATA-TACT-ATGCAAACTATC-GCA-TG
gi|12 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTGT-ATAACAGCCCTAGTTCA--TTGT-CAATCACCCCAGTCTCTAGA--GGGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CCCGACAT-A-GGCCACGCAAGTGGCACAACCCAC-CAAAACAAAAATG-TTAGTGGCCAATCAAAAAACATAataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|14 : gctaggtctttaAAGT-AACACAG--C---ACA--T-CTACATT------------------------CT-ATGCAAACTCCC-GCA-TGTAT
gi|16 : GCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGT----------AGTCCAA--TTTTATTTCCGCTGCCCCTCA-G-TTAC-TCGCCTTACacacaaaccatttcatgcatttgacggttttcattgggtaatgttatggcagcgttacctaggcctatttttttttttttttt
gi|2 : atcGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACAT
gi|3 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG-C-ATAAC--TTATGTTGTTGGAAGAATCAGAGGGTAACT--GGGACATGCCT--------TACAGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGAC------AGACTGCCAGG--TCATGCTCTGACTGTTTGGCGAT----------ACTCCAA--TCTGATTTCCGTTG-CCCTCA-ATTTTC-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAA-TTA-TGG-T-GCTCC-ATGTAGC-GTTTTTTCCTACTCCGGCTCACTCG-------GA---TTTTCGCCAAGGTATGGTTCGATAGAA-TG-AA-GCAGAAGA-----AAACTAT--ATATCTA-TTAGC-CAGGAAATCGG-AT---TACATTTTA-AGCA----CTGCACAA-CACA--TAA-C-ACAACAGAGTT-GCAACACT----AT-ACA-AAA---ATTG--ATCAAGAAAAGGTCAAATG--GGGCATT-GTGTTTAAATTTAGGC-AAGTC-T-GGCTTTTTACGATTGTGAAAGGAG
gi|4 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGG-TCGT-CTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-A-AC-CAA--ACTT-TCCTAG-AG-G----TTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-CTACACTA--------AA-TATG--ATA-TACT-ATGCAAACTCTC-GCA-TGTAT
gi|5 : cGTTGT-ATAACAGCCCTAGCTGA--TTAT-CAATTACCCCAGTCTCTAGA--GGGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CCCGACAT-A-GGCCACGCAAGTGACACAACCCAC-CA--A-AAAAATGTT-AGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGC--AT-AC--TTATGTTGTTGG-A-AAT-AGAGGGTAGTT--GGG-CAT-CCC---------ACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGT--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TATGATTTCCGCTGCCCCTCT-G-TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCTC-----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TATA-A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATAA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTA----TTTTAA-GACA-AAA--TA-TGCCA---GGAATAGGT---ATG---------------------------------------TTTTACGA-T-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCC-GG-TCGT-TTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTA---TN--------GA--ACG--ATACCGCTCAACCAAACTTTC-CTA-TATATacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|6 : GTTGT-ATAACAGTCCTAGCTCA--TTAT-CAATCACCCCAGTCTCTAGA-GAGG-ACA-AGCGCATTTTCTTTA-GACGACCATTTTC-CC-GTCAT-T-GGCCACGCAAGTGACACAACCCAC----TA-AAAA
gi|7 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaAGGTTAACT--GGG-CAT-CTCGTAACTTTTA-AGTCTC--AAC----CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGCATG--CCATGCT---GCTGTTTG--GGTATTTAGATCCACTCAAAGTTTTTATTTCCGCTGCCCCTCAGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAG-TTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTTCA----TGCGTTGTT--GT-TACTTG-AATGCAGAAAGTTACCAAG-TATTCA----TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-ATAA----CTGC---ACCACATTTAA-CAA-AACAGCGTTGGTAATACTTATAAT--CATAAA-CTA-TGCCTTA-GGAAAAGGT---ATGCAA----TCTGT-TTTAGAC----GCTAAGTCATAGGC-TTTTACGACT-TGAAAGGGG----ATTTGCTGCTG-T-AGGAATCGAAACCCCGGG-TCTCGCTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-A-AC-CAATGATCG-GCCTAT--T-GGGACTTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAG--CTT-ACA--TCTTAC-CTA--------GAGTATG--ATG-T--TCATGCAAACTCCCGGCATTGTAT
gi|8 : taGGAATCG-A-CTCCGAGATCGC-CCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-ACAC---A--ATTTATCTTGA-CT-C----TGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGCTC-T-ACACCT-TTG-ATTATTTTTTTTGC-TATGATATA-TATTTGTTCAAAC-CCC-GC--TGTATtacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|9 : AA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTATACTA--------GA-TATG--ATA-TACT-ATGCAAACTATC-GCA-TGacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 22 11 1 111 22222 1 111 1 11 2222 2222222222 111 1 11 1 1 555555555 11 2222 1 1 1 1 1 1111 222222 11 111 11 3333333333 11 1111 2222 111 111 1 1 1 333333333333333333333 11 1 1 333333333333 44444 1 1 1 1 22222 1 3333333 1 1 1 1 111 1 2222 11111 11 1 111 2 1 444444444444 1 33333 111 999999999999999999999999999999999999999999999 222 1 1 1 11 11111 111 222222222 111 111 11 11 222222222222 111111
lowQualScore : 6 1 88 5 22 6 44 3 1 555 22 33333 6 1 0 0 000 1 0 3 88 7 6 6 5555 6666666666 7 666 3 33 0 3 0 111111111 2 8 33 1111 0 0 0 0 0 7777 666666 11 444 11 5555555555 11 1 3 3333 8 1111 111 777 0 0 0 111111111111111111111 33 3 0 0 666666666666 00000 2 0 0 0 0 55555 0 6666666 0 0 7 0 0 777 0 1 1111 88888 33 0 111 0 5 666666666666 0 22222 2 555 1 777777777777777777777777777777777777777777777 000 3 7 7 3 0 3 5 8 44 8 8 8 8 6 6 66666 111 6 6 6 99 6 555555555 6 99 111 111 7 3 5 77 999 33 5 00 888888888888 222222 5 5 5
lowQualScore : . . .. . .. . .. . . ... .. ..... . . . . ... . . . .. . . . .... .......... . ... . .. . . . ......... . . .. .... . . . . . .... ...... .. ... .. .......... .. . . .... . .... ... ... . . . ..................... .. . . . ............ ..... . . . . . ..... . ....... . . . . . ... . . .... ..... .. . ... . . ............ . ..... . ... . ............................................. ... . . . . . . . . .. . . . . . . ..... ... . . . .. . ......... . .. ... ... . . . .. ... .. . .. ............ ...... . . .
lowQualScore : 7 0 33 5 88 7 00 3 0 333 00 55555 7 4 8 6 666 4 6 3 33 3 7 7 0000 7777777777 3 333 3 88 0 2 0 888888888 5 8 88 2222 0 0 0 0 0 0000 000000 00 000 00 0000000000 00 0 2 2222 0 2222 000 555 0 0 0 555555555555555555555 88 2 0 0 555555555555 22222 5 0 0 0 0 00000 0 0000000 0 0 0 0 0 555 0 0 2222 55555 88 0 000 0 0 888888888888 0 55555 5 888 0 222222222222222222222222222222222222222222222 000 2 3 3 3 0 2 0 0 44 0 0 0 0 7 7 77777 777 7 7 7 22 7 777777777 7 22 777 777 3 2 7 99 444 66 7 33 666666666666 666666 7 7 7
consensus : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
Reference ( family-2669 ) : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
gi|1 : GTTGTTATAA-AGCCCTAGCTGA--TTAATCAATTACCCCAGTCTCTAGAGCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CCCGACATTA-GGCTACGCAAGTGACCAACCCCAC-CA--A-AGAAATGTT-AGTGGCCAATCAAAAAA-ATAACTT-AAT--A-TGAGTT-CC--T-ACTGCCCAT-ATCTTTATGT-GTTGGGA-AAT-AGAGGGTAGCTTTGGG-C-T-CCC---------ACAG-CTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT---GGT----------ACTCCAA--TTGATTTTCCG-TGCCCCTCT-GTTTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAA-TTATTGG-T-G---CAA-GT--C-G---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTTC-----GGTATGGTTCGGT-GAA-TGAAA-GCAGAAAG-----AAA-TAT--A----TA-TTAGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---A-CACA--TAACC-A-AACAG-GTT-GTA----TTTTA--GACA-AAATTTATTGCCATC-AGGATAGGT---A---------TC-G----------------------------TTTTACGA-T-TG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC--G-TCG---TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAA-ACACAA--ACTT-TCCTATAATAA----TTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAG--C-TAACAT-T-TTATACTA--------GA--ATGATA-TA---CT-ATGCAAACTATC-GCA-TG
gi|12 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTGT-ATAACAGCCCTAGTTCA--TTGT-CAATCACCCCAGTCTCTAGA--GGGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CCCGACAT-A-GGCCACGCAAGTGGCACAACCCAC-CAAAACAAAAATG-TTAGTGGCCAATCAAAAAACATAataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|14 : gctaggtctttaAAGT-AACACAG--C---ACA--T-CTACATT-------------------------CT-ATGCAAACTCCC-GCA-TGTAT
gi|16 : GCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGT----------AGTCCAA--TTTTATTTCCGCTGCCCCTCA-G-TTAC-TCGCCTTACacacaaaccatttcatgcatttgacggttttcattgggtaatgttatggcagcgttacctaggcctatttttttttttttttt
gi|2 : atcGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACAT
gi|3 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG-C-ATAAC--TTATGTTGTTGGAAGAATCAGAGGGTAACT--GGGACATGCCT--------TACAGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGAC------AGACTGCCAGG--TCATGCTCTGACTGTTTGGCGAT----------ACTCCAA--TCTGATTTCCGTTG-CCCTCA-ATTTTC-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAA-TTA-TGG-T-GCTCC-ATGTAGC-GTTTTTTCCTACTCCGGCTCACTCG-------GA---TTTTCGCCAAGGTATGGTTCGATAGAA-TG-AA-GCAGAAGA-----AAACTAT--ATATCTA-TTAGC-CAGGAAATCGG-AT---TACATTTTA-AGCA----CTGCACAA-CACA--TAA-C-ACAACAGAGTT-GCAACACT----AT-ACA-AAA---ATTG--ATCAAGAAAAGGTCAAATG--GGGCATT-GTGTTTAAATTTAGGC-AAGTC-T-GGCTTTTTACGATTGTGAAAGGAG
gi|4 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGG-TCGT-CTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-A-AC-CAA--ACTT-TCCTAG-AG-G----TTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-CTACACTA--------AA-TATGATA-TA---CT-ATGCAAACTCTC-GCA-TGTAT
gi|5 : cGTTGT-ATAACAGCCCTAGCTGA--TTAT-CAATTACCCCAGTCTCTAGA--GGGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CCCGACAT-A-GGCCACGCAAGTGACACAACCCAC-CA--A-AAAAATGTT-AGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGC--AT-AC--TTATGTTGTTGG-A-AAT-AGAGGGTAGTT--GGG-CAT-CCC---------ACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGT--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TATGATTTCCGCTGCCCCTCT-G-TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCTC-----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TATA-A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATAA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTA----TTTTAA-GACA-AAA--TA-TGCCA---GGAATAGGT---ATG---------------------------------------TTTTACGA-T-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCC-GG-TCGT-TTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTA---TN--------GA--ACGATACCG---CTCAACCAAACTTTC-CTA-TATATacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|6 : GTTGT-ATAACAGTCCTAGCTCA--TTAT-CAATCACCCCAGTCTCTAGA-GAGG-ACA-AGCGCATTTTCTTTA-GACGACCATTTTC-CC-GTCAT-T-GGCCACGCAAGTGACACAACCCAC----TA-AAAA
gi|7 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaAGGTTAACT--GGG-CAT-CTCGTAACTTTTA-AGTCTC--AAC----CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGCATG--CCATGCT---GCTGTTTG--GGTATTTAGATCCACTCAAAGTTTTTATTTCCGCTGCCCCTCAGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAG-TTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTTCA----TGCGTTGTT--GT-TACTTG-AATGCAGAAAGTTACCAAG-TATTCA----TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-ATAA----CTGC---ACCACATTTAA-CAA-AACAGCGTTGGTAATACTTATAAT--CATAAA-CTA-TGCCTTA-GGAAAAGGT---ATGCAA----TCTGT-TTTAGAC----GCTAAGTCATAGGC-TTTTACGACT-TGAAAGGGG----ATTTGCTGCTG-T-AGGAATCGAAACCCCGGG-TCTCGCTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-A-AC-CAATGATCG-GCCTAT--T-GGGACTTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAG--CTT-ACA--TCTTAC-CTA--------GAGTATGATG-TT---C--ATGCAAACTCCCGGCATTGTAT
gi|8 : taGGAATCG-A-CTCCGAGATCGC-CCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-ACAC---A--ATTTATCTTGA-CT-C----TGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGCTC-T-ACACCT-TTG-ATTATTTTTTTTGC-TATGATA-TATATTT-GTTCAAAC-CCC-GC--TGTATtacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|9 : AA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTATACTA--------GA-TATGATA-TA---CT-ATGCAAACTATC-GCA-TGacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 22 11 1 111 22222 1 111 1 11 2222 2222222222 111 1 11 1 1 555555555 11 2222 1 1 1 1 1 1111 222222 11 111 11 3333333333 11 1111 2222 111 111 1 1 1 333333333333333333333 11 1 1 333333333333 44444 1 1 1 1 22222 1 3333333 1 1 1 1 111 1 2222 11111 11 1 111 2 1 444444444444 1 33333 111 999999999999999999999999999999999999999999999 222 1 1 1 11 11111 111 222222222 111 111 11 11 222222222222 111111
lowQualScore : 6 1 88 5 22 6 44 3 1 555 22 33333 6 1 0 0 000 1 0 3 88 7 6 6 5555 6666666666 7 666 3 33 0 3 0 111111111 2 8 33 1111 0 0 0 0 0 7777 666666 11 444 11 5555555555 11 1 3 3333 8 1111 111 777 0 0 0 111111111111111111111 33 3 0 0 666666666666 00000 2 0 0 0 0 55555 0 6666666 0 0 7 0 0 777 0 1 1111 88888 33 0 111 0 5 666666666666 0 22222 2 555 1 777777777777777777777777777777777777777777777 000 3 7 7 3 0 3 5 8 44 8 8 8 8 6 6 66666 111 6 6 6 99 6 555555555 6 99 111 111 7 3 5 77 999 33 5 00 888888888888 222222 5 5 5
lowQualScore : . . .. . .. . .. . . ... .. ..... . . . . ... . . . .. . . . .... .......... . ... . .. . . . ......... . . .. .... . . . . . .... ...... .. ... .. .......... .. . . .... . .... ... ... . . . ..................... .. . . . ............ ..... . . . . . ..... . ....... . . . . . ... . . .... ..... .. . ... . . ............ . ..... . ... . ............................................. ... . . . . . . . . .. . . . . . . ..... ... . . . .. . ......... . .. ... ... . . . .. ... .. . .. ............ ...... . . .
lowQualScore : 7 0 33 5 88 7 00 3 0 333 00 55555 7 4 8 6 666 4 6 3 33 3 7 7 0000 7777777777 3 333 3 88 0 2 0 888888888 5 8 88 2222 0 0 0 0 0 0000 000000 00 000 00 0000000000 00 0 2 2222 0 2222 000 555 0 0 0 555555555555555555555 88 2 0 0 555555555555 22222 5 0 0 0 0 00000 0 0000000 0 0 0 0 0 555 0 0 2222 55555 88 0 000 0 0 888888888888 0 55555 5 888 0 222222222222222222222222222222222222222222222 000 2 3 3 3 0 2 0 0 44 0 0 0 0 7 7 77777 777 7 7 7 22 7 777777777 7 22 777 777 3 2 7 99 444 66 7 33 666666666666 666666 7 7 7
consensus : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
Reference ( family-2669 ) : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
gi|1 : GTTGTTATAA-AGCCCTAGCTGA--TTAATCAATTACCCCAGTCTCTAGAGCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CCCGACATTA-GGCTACGCAAGTGACCAACCCCAC-CA--A-AGAAATGTT-AGTGGCCAATCAAAAAA-ATAACTT-AAT--A-TGAGTT-CC--T-ACTGCCCAT-ATCTTTATGT-GTTGGGA-AAT-AGAGGGTAGCTTTGGG-C-T-CCC---------ACAG-CTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT---GGT----------ACTCCAA--TTGATTTTCCG-TGCCCCTCT-GTTTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAA-TTATTGG-T-G---CAA-GT--C-G---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTTC-----GGTATGGTTCGGT-GAA-TGAAA-GCAGAAAG-----AAA-TAT--A----TA-TTAGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---A-CACA--TAACC-A-AACAG-GTT-GTA----TTTTA--GACA-AAATTTATTGCCATC-AGGATAGGT---A---------TC-G----------------------------TTTTACGA-T-TG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC--G-TCG---TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAA-ACACAA--ACTT-TCCTATAATAA----TTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAG--C-TAACAT-T-TTATACTA--------GA--ATGATA-TA---CT-ATGCAAACTATC-GCA-TG
gi|12 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTGT-ATAACAGCCCTAGTTCA--TTGT-CAATCACCCCAGTCTCTAGA--GGGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CCCGACAT-A-GGCCACGCAAGTGGCACAACCCAC-CAAAACAAAAATG-TTAGTGGCCAATCAAAAAACATAataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|14 : gctaggtctttaAAGT-AACACAG--C---ACA--T-CTACATT-------------------------CT-ATGCAAACTCCC-GCA-TGTAT
gi|16 : GCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGT----------AGTCCAA--TTTTATTTCCGCTGCCCCTCA-G-TTAC-TCGCCTTACacacaaaccatttcatgcatttgacggttttcattgggtaatgttatggcagcgttacctaggcctatttttttttttttttt
gi|2 : atcGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACAT
gi|3 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG-C-ATAAC--TTATGTTGTTGGAAGAATCAGAGGGTAACT--GGGACATGCCT--------TACAGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGAC------AGACTGCCAGG--TCATGCTCTGACTGTTTGGCGAT----------ACTCCAA--TCTGATTTCCGTTG-CCCTCA-ATTTTC-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAA-TTA-TGG-T-GCTCC-ATGTAGC-GTTTTTTCCTACTCCGGCTCACTCG-------GA---TTTTCGCCAAGGTATGGTTCGATAGAA-TG-AA-GCAGAAGA-----AAACTAT--ATATCTA-TTAGC-CAGGAAATCGG-AT---TACATTTTA-AGCA----CTGCACAA-CACA--TAA-C-ACAACAGAGTT-GCAACACT----AT-ACA-AAA---ATTG--ATCAAGAAAAGGTCAAATG--GGGCATT-GTGTTTAAATTTAGGC-AAGTC-T-GGCTTTTTACGATTGTGAAAGGAG
gi|4 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGG-TCGT-CTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-A-AC-CAA--ACTT-TCCTAG-AG-G----TTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-CTACACTA--------AA-TATGATA-TA---CT-ATGCAAACTCTC-GCA-TGTAT
gi|5 : cGTTGT-ATAACAGCCCTAGCTGA--TTAT-CAATTACCCCAGTCTCTAGA--GGGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CCCGACAT-A-GGCCACGCAAGTGACACAACCCAC-CA--A-AAAAATGTT-AGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGC--AT-AC--TTATGTTGTTGG-A-AAT-AGAGGGTAGTT--GGG-CAT-CCC---------ACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGT--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TATGATTTCCGCTGCCCCTCT-G-TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCTC-----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TATA-A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATAA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTA----TTTTAA-GACA-AAA--TA-TGCCA---GGAATAGGT---ATG---------------------------------------TTTTACGA-T-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCC-GG-TCGT-TTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTA---TN--------GA--ACGATACCG---CTCAACCAAACTTTC-CTA-TATATacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|6 : GTTGT-ATAACAGTCCTAGCTCA--TTAT-CAATCACCCCAGTCTCTAGA-GAGG-ACA-AGCGCATTTTCTTTA-GACGACCATTTTC-CC-GTCAT-T-GGCCACGCAAGTGACACAACCCAC----TA-AAAA
gi|7 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaAGGTTAACT--GGG-CAT-CTCGTAACTTTTA-AGTCTC--AAC----CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGCATG--CCATGCT---GCTGTTTG--GGTATTTAGATCCACTCAAAGTTTTTATTTCCGCTGCCCCTCAGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAG-TTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTTCA----TGCGTTGTT--GT-TACTTG-AATGCAGAAAGTTACCAAG-TATTCA----TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-ATAA----CTGC---ACCACATTTAA-CAA-AACAGCGTTGGTAATACTTATAAT--CATAAA-CTA-TGCCTTA-GGAAAAGGT---ATGCAA----TCTGT-TTTAGAC----GCTAAGTCATAGGC-TTTTACGACT-TGAAAGGGG----ATTTGCTGCTG-T-AGGAATCGAAACCCCGGG-TCTCGCTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-A-AC-CAATGATCG-GCCTAT--T-GGGACTTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAG--CTT-ACA--TCTTAC-CTA--------GAGTATGATG-TT---C--ATGCAAACTCCCGGCATTGTAT
gi|8 : taGGAATCG-A-CTCCGAGATCGC-CCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-ACAC---A--ATTTATCTTGA-CT-C----TGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGCTC-T-ACACCT-TTG-ATTATTTTTTTTGC-TATGATA-TATATTT-GTTCAAAC-CCC-GC--TGTATtacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|9 : AA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTATACTA--------GA-TATGATA-TA---CT-ATGCAAACTATC-GCA-TGacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
blockSeqs : . C AA T T . A T A AG AC ACAGT C A T CCA A A TA A G G AATA CATAAC T AAG C . A A G GTAACTTTT C G AA CCCG A A C T T GATA ACATCA . CTG GC ATTTAGATCC GT T C AGGT . TCAT ATA TTC . T . TGCTCCATGTAGCGTTT AC T A C ATTCACCGAG GCCAA C A T . T TTACC C ATATC T . G T . . . C . ACAA TT . AC A G ATACTTATAAT T CTA C TCA A CAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCT TTG A A T . A A G A CG . A . G T G TTTAC . . C . TG A TGGGAC . . CTA TTT A A A CT TT CC C CA TTTTTTTTGCT TATAT C G T
blockSeqs : . T AA T T . A T T AG CA ACAGT . T T CCA T . . A . G AT CATAC T A . . . A . T C G . . . . . . . . A . . . . . G T AAT . . T . . . . ATAGCAGTGCAGTT . T . . GAT A C . . . . . . TCA . . A . . . . A . AC . . AA C G ACACTAT . AT C TA T ATGCAATCTGTTTTAGACGCTAAGTCATAGGC CT A . . . . A G . T . . . . . . . . . . . . . AGG . . . . A A . . T . . CA GAGT CCG . . .
blockSeqs : . T . . G . A . T A CA CAAA . T T . T . . A . . . T . . . . . . . . A . . . . . G C AG . . T . . . . TGCAGTGCG . T . . GA . . . . . . . . AA . . . . . . . A . A . . A . . TTTTAAG . TA . . A ATG T A . . . . T . . . . . . . . . . . . . ATA . . . . A C . . T . . TA AAT TA . . .
blockSeqs : . G . . . . . . A A AC CA . A . . A . . . . . . . T C TG . . C . . . . . . . . . . . . . CTC . . . . . A . . T . . C GAT TT . . .
blockSeqs : . C . . . . . . T T AC T . . . . . . . . . . ATA . . . . . A . . T . . A GA TA . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons : T* A* A** CAGT* ** AG** T* *** ATA****** ** T** ** GAT*********
originalCons : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCA-GTTTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGC-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
finalCons : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGAT-GGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCATA--GGCCACGCAAGTGACNNAACCCACCAGT-A-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCAG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG-TCGT-CTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTATATA------TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--CT--ACA--T-TTACACTAGAT---------ATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 22 11 1 111 22222 1 111 1 11 2222 2222222222 111 1 11 1 1 555555555 11 2222 1 1 1 1 1 1111 222222 11 111 11 3333333333 11 22 2222 111 111 1 1 1 333333333333333333333 11 1 1 333333333333 44444 1 1 1 1 22222 1 3333333 1 1 1 1 111 1 2222 11111 11 1 111 2 1 444444444444 1 33333 111 999999999999999999999999999999999999999999999 222 1 1 22222 1 11111 111 222222222 111 111 11 11 222222222222 111111
lowQualScore : 6 1 88 5 00 6 44 3 1 555 22 33333 6 1 0 0 000 1 0 3 88 7 6 6 5555 6666666666 7 666 3 33 0 3 0 111111111 2 8 33 1111 0 0 0 0 0 7777 666666 11 444 11 5555555555 11 1 3 1 77 8 1111 111 777 0 0 0 111111111111111111111 33 3 0 0 666666666666 00000 2 0 0 0 0 55555 0 6666666 0 0 7 0 0 777 0 1 1111 88888 33 0 111 0 5 666666666666 0 22222 2 555 1 777777777777777777777777777777777777777777777 000 3 7 7 3 0 3 22222 3 8 8 8 8 6 6 66666 111 6 6 6 99 6 555555555 6 99 111 111 7 3 5 77 999 33 5 00 888888888888 222222 5 5 5
lowQualScore : . . .. . .. . .. . . ... .. ..... . . . . ... . . . .. . . . .... .......... . ... . .. . . . ......... . . .. .... . . . . . .... ...... .. ... .. .......... .. . . . .. . .... ... ... . . . ..................... .. . . . ............ ..... . . . . . ..... . ....... . . . . . ... . . .... ..... .. . ... . . ............ . ..... . ... . ............................................. ... . . . . . . ..... . . . . . . . ..... ... . . . .. . ......... . .. ... ... . . . .. ... .. . .. ............ ...... . . .
lowQualScore : 7 0 33 5 55 7 00 3 0 333 00 55555 7 4 8 6 666 4 6 3 33 3 7 7 0000 7777777777 3 333 3 88 0 2 0 888888888 5 8 88 2222 0 0 0 0 0 0000 000000 00 000 00 0000000000 00 0 2 4 00 0 2222 000 555 0 0 0 555555555555555555555 88 2 0 0 555555555555 22222 5 0 0 0 0 00000 0 0000000 0 0 0 0 0 555 0 0 2222 55555 88 0 000 0 0 888888888888 0 55555 5 888 0 222222222222222222222222222222222222222222222 000 2 3 3 3 0 2 22222 6 0 0 0 0 7 7 77777 777 7 7 7 22 7 777777777 7 22 777 777 3 2 7 99 444 66 7 33 666666666666 666666 7 7 7
consensus : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-CGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCAGT-TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG--TCGTCTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
Reference ( family-2669 ) : GTTGT-ATAACAGCCCTAGCTNA--TTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTTA-GTCGAAAATTTTC-CCCGNCAT-A-GGCCACGCAAGTGACNNAACCCAC-CAGTA-AAAAATGTTTAGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGCC-AT-AC--TTATGTTGTTGGGA-AAT-AGAGGGTAGCT--GGG-CAT-CCC--------TACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGG--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TTTNATTTCCGCTGCCCCTCAG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G-TTTTTCCT--TCCGGCTC-CT-G-------GA--TTTTTCG----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TAT--A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATNA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTAACACTTTTAATGACA-AAA-CTATTGCCATC-GGAANAGGT---ATG--G----TC-GT-TTTAGAC----GC-AAGTC-T-GGC-TTTTACGACT-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCCGGG--TCGTCTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTACACTA--------GA-TATGATA-TA---CT-ATGCAAACTCCC-GCA-TGTAT
gi|1 : GTTGTTATAA-AGCCCTAGCTGA--TTAATCAATTACCCCAGTCTCTAGAGCGGGCACTTAGCGCATTTCCTTTAAGTCGAAAATTTTC-CCCGACATTA-GGCTACGCAAGTGACCAACCCCAC-CA--A-AGAAATGTT-AGTGGCCAATCAAAAAA-ATAACTT-AAT--A-TGAGTT-CC--T-ACTGCCCAT-ATCTTTATGT-GTTGGGA-AAT-AGAGGGTAGCTTTGGG-C-T-CCC---------ACAG-CTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACT-----AGATTTGCTAGTTTCATGCT---GCTGTTT---GGT----------ACTCCAA--TTGATTTTCCG-TGCCCCTCTGT-TTACTTCG-CTTACCCC----CTTCGT-T-GTG---CATAAA-TTATTGG-T-G---CAA-GT--C-G---TTACCT--TCCGGC-C-CT-G-------GAGTTTTTTC-----GGTATGGTTCGGT-GAA-TGAAA-GCAGAAAG-----AAA-TAT--A----TA-TTAGCTCAGAAAA-CGGTATTAGTACATTTTATATTAAGACTTGC---A-CACA--TAACC-A-AACAG-GTT-GTA----TTTTA--GACA-AAATTTATTGCCATC-AGGATAGGT---A---------TC-G----------------------------TTTTACGA-T-TG-AAGGGGAAAAAATTGCTGCTATTGGGGAATCG-AACCTC--G--TCG--TAGTTTGCTAA-TCC-CAGAA-C-GATA-----CCGCATTTCAA-ACACAA--ACTT-TCCTATAATAA----TTCCAATTGGAAATAATTA---AAC---CAAAAAA--GAAAGT-AAAACAG--C-TAACAT-T-TTATACTA--------GA--ATGATA-TA---CT-ATGCAAACTATC-GCA-TG
gi|12 : tctaaacttaaaattttttgaccgaataatttttatgaattgaagattccacaagtcgcctaggaaaaaaaaactggtggctttccagcccctgcgctaaggtcctttGTTGT-ATAACAGCCCTAGTTCA--TTGT-CAATCACCCCAGTCTCTAGA--GGGCACA-TGCGCATTTTCTTTA-GT-GAAAATTT---CCCGACAT-A-GGCCACGCAAGTGGCACAACCCAC-CAAAACAAAAATG-TTAGTGGCCAATCAAAAAACATAataccaccaaaccattcaatgcagtttgacgtcgatttaatggggaatgttatggcagcgttacataatacctattttatcatttttttttcttt
gi|14 : gctaggtctttaAAGT-AACACAG--C---ACA--T-CTACATT-------------------------CT-ATGCAAACTCCC-GCA-TGTAT
gi|16 : GCGT----AGACA-----AGACTTGCAGG--CCATGCT---GCTGTTTG--GGT----------AGTCCAA--TTTTATTTCCGCTGCCCCTCAG--TTAC-TCGCCTTACacacaaaccatttcatgcatttgacggttttcattgggtaatgttatggcagcgttacctaggcctatttttttttttttttt
gi|2 : atcGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACAT
gi|3 : atcaggtctaaatagattgtaagggtaactaagtaccggaggctcccctatgattaaggcttgtttagtacacccaacaatttcttgagtaccatgaatggagttagttgggatcatgaaatagtttaatttaactgaatagcagaatgcgaaatatgaccttcgttgtgatcttaactgtaactcgtcggggcattagtgcttaaacacgaacctcataacaatagcgaagtcgagaattggaaatgacaaagttgaatcaaacccgtttcagcctaagttgatgtttgcatcacattccctttgaccctgtgtgtactgagacagttgtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGTTAT-AGAACAGCCCTAGCTTAAATTATTCAATCACCCCAGTCTCTAGA-TGGGCACA-AGCGCATTTTCTTT--GTCGAAAATACTCTCTCGTCAT-AGGGCCACGAAAGTGACCAAACCGACACAGTA-AAAATTGTTTAGTGG---ACCATAACACATTACCTAAATTAAATGA--TGCCAATAACTG-C-ATAAC--TTATGTTGTTGGAAGAATCAGAGGGTAACT--GGGACATGCCT--------TACAGGCTCAAAACCCCGC-CTG-TTGCC-ACTCCGTCTACTGCGT----AGAC------AGACTGCCAGG--TCATGCTCTGACTGTTTGGCGAT----------ACTCCAA--TCTGATTTCCGTTG-CCCTCAAT-TTTC-TCGCCTTACCCC----CTTCGTATAGTC---C-CCAA-TTA-TGG-T-GCTCC-ATGTAGC-GTTTTTTCCTACTCCGGCTCACTCG-------GA---TTTTCGCCAAGGTATGGTTCGATAGAA-TG-AA-GCAGAAGA-----AAACTAT--ATATCTA-TTAGC-CAGGAAATCGG-AT---TACATTTTA-AGCA----CTGCACAA-CACA--TAA-C-ACAACAGAGTT-GCAACACT----AT-ACA-AAA---ATTG--ATCAAGAAAAGGTCAAATG--GGGCATT-GTGTTTAAATTTAGGC-AAGTC-T-GGCTTTTTACGATTGTGAAAGGAG
gi|4 : ttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttGG--TCGTCTAG-TTGCTAA-T-C-CAGAA-C-GAAA-----CCGT---TC-A-AC-CAA--ACTT-TCCTAG-AG-G----TTCCAA-CGGAA--AATTA---AAC---C-AAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-CTACACTA--------AA-TATGATA-TA---CT-ATGCAAACTCTC-GCA-TGTAT
gi|5 : cGTTGT-ATAACAGCCCTAGCTGA--TTAT-CAATTACCCCAGTCTCTAGA--GGGCACT-AGCGCATTTCCTTTA-GTCGAAAATTTTC-CCCGACAT-A-GGCCACGCAAGTGACACAACCCAC-CA--A-AAAAATGTT-AGTGGCCAATCAAAAAACATAACTT-AAT--AATGAGTTGCC-AT-ACTGC--AT-AC--TTATGTTGTTGG-A-AAT-AGAGGGTAGTT--GGG-CAT-CCC---------ACAGGCTC--AAC----C-CTG-TTGCC-AC-CCG-CTACTGCGT----AGACA-----AGATTTGCAGT--TCATGCT---GCTGTTTG--GGT----------ACTCCAA--TATGATTTCCGCTGCCCCTCTG--TTAC-TCGCCTTACCCC----CTTCGT-T-GTG---C-CAAA-TTA-TGG-T-G---C-A-GT-GC-G---TTTCCT--TCCGGCTC-CT-G-------GA--TTTCTC-----GGTATGGTTCGGT-GAA-TG-AA-GCAGAAAG-----AAA-TATA-A----TA-TTAGC-CAGAAAA-CGG-AT---TACATTTTA-ATAA----CTGC---A-CACA--TAA-C-A-AACAG-GTTGGTA----TTTTAA-GACA-AAA--TA-TGCCA---GGAATAGGT---ATG---------------------------------------TTTTACGA-T-TGAAAGGGGAAAAAATTGCTGCTATT-GGGAATCG-AACCCC-GG--TCGTTTAG-TTGCTAA-T-C-CAGAA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTA---TN--------GA--ACGATACCG---CTCAACCAAACTTTC-CTA-TATATacacaaaccatttcatgcattttacggttttcatggggaatgttatggcagcgttacatatatgcctagctattttttgtttttttgttgtgcaataatgaaaaattacttaatagcttatctatcaagattagaaattaatcaagataaaggtttgttgcaaaattaacgtgtaatcgtgtcgcacacatgaataataatgtattgtaacaagatggctaaccctgcccaacagaacatgcaacaatcgaatagatataagtacgatttctttgccatcgacagttaaaataatatatagttgctacaatatcctaaaacaattgaaataagttgacaatttttatattaaatgacttgattaagccatatttctacagagaaaaatttttacgaactggaccaattgctgatttttccccaacaggaagtttctcggtagtgtattgagaggttcgcttatgctcgacccggcaaattcgggaaaaacattattgaacgtaacatttagcagtgttaaatctacatactcgtacaatgaaaggccacggatatttgtgat
gi|6 : GTTGT-ATAACAGTCCTAGCTCA--TTAT-CAATCACCCCAGTCTCTAGA-GAGG-ACA-AGCGCATTTTCTTTA-GACGACCATTTTC-CC-GTCAT-T-GGCCACGCAAGTGACACAACCCAC----TA-AAAA
gi|7 : atcagtctaatagtgtaaggtaattagtaccggagcattcccctatgattagcttgtttcgtacactccaacaatttcagtaccatgaaggactagttgggcatttgcatagttaatttaactgaaaaagcagaattcagaaatatgacatagttgtgcttgactgtaattctgtcggggcattagtgctaaaacgaaactttaacaatatgcgaagttgtgattgggaatgacaaagttaaatccaaacccgtttcagcttaagttgatgttagtactcacattcccttgaccctgtgtgtactgagacagtttatcgagcttgtgaagtgatttattaaggccctattccttgccaacattgaatgtgaatagccataagactttcaatgagttatggtaatgatgcatacagataatttaatttataatggttaaaaaaaggcaatataatgtttgatagtatttagacttaaatttttttgacgaaataatgacaattgtttttatatattgaagatccacaagtccctagaaaaaactggtggctttccagggctaggtctttaAGGTTAACT--GGG-CAT-CTCGTAACTTTTA-AGTCTC--AAC----CATTGATTGCCCAC-CTT-CTACTGCATGATAAGGCACATCAAGATTTGCATG--CCATGCT---GCTGTTTG--GGTATTTAGATCCACTCAAAGTTTTTATTTCCGCTGCCCCTCAGGTTTAC-T-GCCTTTCCCCTCATCTTCCC-T-TTGTTCC-CAAATTTA-TGGATAG---C-A-GT-GCAG-TTTTTCCT--TCCGGATC-CT-GATTCACCGA--GTTTTCA----TGCGTTGTT--GT-TACTTG-AATGCAGAAAGTTACCAAG-TATTCA----TATTTAGT-CAG-AAT-CGG-AT---CACATTTTA-ATAA----CTGC---ACCACATTTAA-CAA-AACAGCGTTGGTAATACTTATAAT--CATAAA-CTA-TGCCTTA-GGAAAAGGT---ATGCAA----TCTGT-TTTAGAC----GCTAAGTCATAGGC-TTTTACGACT-TGAAAGGGG----ATTTGCTGCTG-T-AGGAATCGAAACCCCGGGTCTCG-CTAG-TTGCTAA-T-C-CAAAA-CGGATA-----CCGC---TC-A-AC-CAATGATCG-GCCTAT--T-GGGACTTCC-A-TGG-A--AATTA---AACTTTC-AAAAACGCAAAGTAAAAACAG--CTT-ACA--TCTTAC-CTA--------GAGTATGATG-TT---C--ATGCAAACTCCCGGCATTGTAT
gi|8 : taGGAATCG-A-CTCCGAGA-TCGCCCAG-TTGCTAAAT-CGCAGATTC-TGTATTTACCCAC---AC-ACAC---A--ATTTATCTTGA-CT-C----TGCCAA-AGGAT--AATTACTAAAC---CATAAAAAGCAAAGT-AAAACAGCTC-T-ACACCT-TTG-ATTATTTTTTTTGC-TATGATA-TATATTT-GTTCAAAC-CCC-GC--TGTATtacacaaaccatttcaactgatttgacggtttctggggaattgttatggtaacgtagatag
gi|9 : AA-C-GATA-----CCGC---TC-A-AC-CAA--ACTT-TCCTAT-AT-A----TTCCAA-TGGAA--AATTA---AAC---CAAAAAAAGGAAAGT-AAAACAG--C-T-ACA--T-TTATACTA--------GA-TATGATA-TA---CT-ATGCAAACTATC-GCA-TGacatttatcatttgcaaggttttgaatgggtaatgtatatgggcagcattcaataggcctatttttttattgttgccaaataaaactttacattaaaaggctctttatctatattcgagaatagattagttaaattatggtatttgtgcaaataaaggatcatgaccgttggggtgtacatgtgccagcaactaatgtaactcccatgaatgtattcgtaacaggaatggctaacccctgccgattgcaactcaggacaaacaggaacatgaacaattcgatgatggaatatcaggaacgaatttctcttgccatcaggactcagtgtaaaaataatatatatcttgctcaatatc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCCCTCTTTCTTTTTTGCAATATAAAAAACATTACTTAATAGCTTATCTATCGAGATAGAAAGTTAATCATAGATAAAGGGTTGTTGCAATTAACGTGTACATGTGTCGCACAAATGAATAATAATGTATTGTTAACAAGATGGCTAAAACTGCCGTACACAACAGAAACATGCAACGATGCATTTAAGTACGATTTCTTTGCCATCGACAGTAAAATAATAATATATCTTGCTACAATATCTAAAACAATTGAATAAGTGATATCTTTATATTAAATGACTTGATAAAGCCATATTCAACAGAGAAATTTTTTTATGATCTGACCAATTGCTGATTTTTTCCCAAGAGAAGTTTCCGGTAGGGTATGTTGAGAGGTTCGCTTATGCTCGACCCTGCAAATTCCGGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAATCTACATATCTAGACAAGCTCAAATAT
Unaligned ( gi|11 ): ATGCTTACGTTTAATACTTTGCCATTTTAACATTTTAGCGTGATCTTATCAATCGCTGATATTTTTAATAGAGGAAGTTTCTTGGTTGTTCGCTTATGCTCAACCCGGCAAATTCCGGGAAAAACGAACTGTAATATGTTTCCAGTGTTAAATATATATATTTTTTCAGACAAGTTTGAATATGT
Unaligned ( gi|13 ): ATGAACTGACCAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGTTCGCTTATGCTCGACCCGGCAAATTCCTGGAAAAACATATTGAACGTAACAGTTAGCAGTGTTAAGACAAGCTCAAATATGT
Unaligned ( gi|15 ): ATCAGTCTAATAGTGCAAGGTAATTAGTACCGGGGCATCCCCCTATGATTAGCTTGTTTCGTACACCCCAACAATATCAGTACCATGAAGAATTAGTTGGGCATTTGAATAGTTAATCTAACT
Unaligned ( gi|17 ): GATTTTCGCCAAAGTAACGGCTTGTAGAATGCAGAAGCAAAATTATGCACCAGCAGGACGGATTA