lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1111111 22 11 111111 11111111 5555555555555555555555555555555 11 111 111 55555555555555555555555555555555555 22222 11 1 1111111 1111 1 11 2222222222222 111 2 222222222 111 11111 22222 222 66666666666 11 888888888888888888888888888 1111 4444444444444444 1 444 4444444444444444444444444444444444444444444444444444444444444444 22 11 33 22 2 33 1 11 11 1 2 333 22 1
lowQualScore : 66 4 4 00 5 5 5 0 5 1 9 88 5 5 5 999 2 3333333 22 8 44 5 5 555555 77 55555555 9999999999999999999999999999999 5 5 11 3 333 6 111 99999999999999999999999999999999999 99 77 00000 66 4 00 0 5 1 888 3 66 0 77 77 5 7777777 0 1 2222 1 0 11 1 8 8888888888888 1 222 7 6 0 99 666666666 000 88888 6 88888 88 3 333 6 00000000000 6 6 11 11 222222222222222222222222222 7777 5555555555555555 0 111 8888 6 6 6666666666666666666666666666666666666666666666666666666666666666 33 6 22 3 4 6 55 66 0 6 55 4 6 6 5 6 88 88 6 5 0 333 33 6 3 6 6 5 6
lowQualScore : .. . . .. . . . . . . . .. . . . ... . ....... .. . .. . . ...... .. ........ ............................... . . .. . ... . ... ................................... .. .. ..... .. . .. . . . ... . .. . .. .. . ....... . . .... . . .. . . ............. . ... . . . .. ......... ... ..... . ..... .. . ... . ........... . . .. .. ........................... .... ................ . ... .... . . ................................................................ .. . .. . . . .. .. . . .. . . . . . .. .. . . . ... .. . . . . . .
lowQualScore : 11 4 4 22 0 0 0 5 0 0 6 44 0 0 0 888 2 4444444 44 9 11 7 7 666666 99 77777777 3333333333333333333333333333333 7 7 00 2 333 7 777 99999999999999999999999999999999999 33 99 11111 44 0 00 4 7 7 666 7 11 3 99 99 7 4444444 6 4 6666 4 6 00 4 0 2222222222222 4 444 8 7 0 22 777777777 222 77777 7 00000 33 7 333 7 33333333333 7 7 55 00 000000000000000000000000000 0000 2222222222222222 0 777 0000 0 0 0000000000000000000000000000000000000000000000000000000000000000 00 0 00 0 0 0 00 00 0 0 55 0 0 0 0 0 00 00 0 5 0 555 00 0 0 0 0 0 0
consensus : TCTTC--GCCAA-AGT-AAAAGCAANGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNAT-NGG-TCTGT-AA-TTA-CCGAGG--AGN--TCTTTA-TCNCC-TTTTTT-A-TGTA----TCA--AA-----G--ATA----------------A----AACAGCCANTCT-TTGTGT-AAA-NGTTAAAC-AT-TCT---TCAT---AA---AANNATTT-AT-CAA---C-GG-AG--AA-AAAA--GTTA-TG-TTT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNATACCGTCTA--ACCCA--G-GACTC----TTGTTACTCTTCATGTCGAATAAAGCACAACGGTATTTTTCCATC--GTGAGT-GGA----GAATC----TAAGAAAA--TTTTATCATCATC-GGATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAG---TCTT-CTAC---ATTTG-TA-----G-ACTATAT-AATT-TCTGGTAAAACG--CATAC-------AT-----G-T-TATCANGTATATCAT---CATTATC-T-TGNC-----AA-AA-CAGAATTATTTTT--CATNCNNTAATTGCTTAATCGTATTT-----TTGTATTGACAACTCT----TTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTNTAGACTTATTATCAATCAGTAAATGCAAGTTCAAGATTCTGAAATTTCGTTTTAAANTTCATATCAATGTTTCTAGAGTCTTTTCCTCCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACAAGATGTNTTGGTAGTNTTACTTAATTTGGATGAATAATCAA
Reference ( gi|1 ) : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTAT-GGG-TCTGT-AG-TTA-CCAAAG--AGT--TCTTTA-ACGCC-CTTTTT-A-TGTA----TAA--AA-----G--ATA----------------A----AACAGTCCCTCT-TTGTGT-AAA-GGTTAAAC-AT-TCT---TCAT---AC---AACGATTT-AT-CAA---CCGG-AG--AA-AAAA--GTTA-TA-TTT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGTCTA--ACCCA--G-GACTC----TTATTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCATT--GTGAGT-GGA----GATTC----TAAGAAAA--TTTTATCATCACC-AGATATAA-TTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAA---TCTT-CTAC---ATTTG-TA-----GAACTATAT-AATT-TCTGGTAAAACG--CATAC-------GT-----G-C-TATCAAGTATATCAT---TATTAT--T-TGTC-----AA-AA-CAGAATTATTTT---CATTCTTTAATTGTTTAATTGTATTTGAAGCTTGTCTTTGTGACTCCAGTCTTTAAAAATACAAAGAAT-T------ATTTTCC-CCTCGTTCTGTCCAGTTCGCCCTTGATCTTATCTGAGCTCCTTTAGACTTATTATCGATCAGTAC-TGCAAGTTCG-GATTCT-AAATTTTGTTTT-AAATTCATATCAATATCTATAAAGTCTTTTCCTTCTATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTGGTTTTATTCAATTTGGGTGAATAATCAA
gi|5 : TCTTC--GCCAA-AGT-AAAAGCAATGCT-TTTAT-AG-TCTGTGTTTG-TAAGACTCAT-GGG-TCTGT-AG-TTA-CCAAGG--AGG--TCTTTA-TCTCC-CTTTTT-A-TGTA----TCA--AA-----G--ATA----------------A----AACAGCCAATCT-TTGTGT-AAA-AGTTAAAC-AT-TCT---TCAT---AA---AAAAAATT-AT-CAA---CAGA-ATC-AA-AAAA--GTTA-TG-TTT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GGGCAGACCGTCTA--ACCCA--G-GACTC----TTATTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCATT--GTGAGT-GGA----GAATC----TAAGAAAA--TTTTATCATCATC-AGATATAATTTTTTTCAAAATTTA--AATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAG---TCTT-CTAC---ATTTG-TACGNNNNNNNNNNNN-NNNN-NNNNNNNNNACGACTATATAATTCTGGTAAAACG-CATA-CATGT-TATCACGTATATCATCAT-TATCTTGACAA-AA-CAGAATTATTTT---CA
gi|2 : TCTTC--GCCAA-AGTTAAAAGCAATGCT-TTTATCAGCTCTGTGTTTGCTAAGACTCATTGGGCTCTGT-AGCTTAGCCAAGG--AGG--TCTGTA-TCCCC-CTTTTTTACTGTA----TCA--AA-----G--ATA----------------C----AACAGCCAATCT-TTGTGT-AAA-AGTTAA-C-AT-TCT---TCATTAAAA---AACAATT--AT-CAC---ACAG-AATCAA-AAAA--GTTA-TG-TTTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GGC-AGACCGTCTA--ACC-A--G-GACTC----TTATTACTCTTCATGTTGAATAAAGCACAAC-GCATTTCTCCATTTCGTGAGT-GGA----GAATC----TAAGAAAATTTTTTATCATCATCAAGATATAATTTTTTTCAAAATTTAACCA-TTGATAAA---------AAGCTTC-TG--AATTT-CTGAGTGTTCTTCCTAC---ATTTGCTACC---G-ACTATATCAATTCTCTGGTAAAACG--CATAC-------AA-----G-T-TATCACGTATATCAT---CATTATC-T-TGAC-----AATAATCAGAATTATTTTTG-CATGCTTTA
gi|3 : cttgcatttattcctatatctacctttaatgtaacgctgacctgatcatttggcattaacttatcttattattttttgtagccTCTTCTTGCTAA-TAC-AAAAACTAAAAT-CTTAT-AA-TCTGTATTGG-TGAGGCTAAT-TGG-TCTAT-AA-TTA-ATGAGA--TGC--CTTTTA-TCACC-TTTCTT-A-TATAATATTGA--AATTACAG--ATA----------------A----A---------CG-TTGTGA-ATA-TGT-AAGTGAT-TCTCTTTCAT---AG---GAGCATTCCATGCAA------G-AA--AA-CAAATGGTT-----CTT-TAACTCA-TTCCAAAATGTCTTATA-AAATGTTGC--TGGTATTCCATCTA--AACCA--G-GAGAT----TTGTTTTCTTTCATATCAAATAATGCAT--TGGTATATT--CATC--AAGAGTTGGAACTTGGTT-----TGACATAT--TTTTGTCATCAAC-GCTTAAAA-CATTTTCAAAAATTG--TATTTTGTAAATATTTATTCAAT--TC---ACAATTT-CTG-----TTTT-CTTCTTGATTTG-TA-----------TAT-AATT-TTTCATAA
gi|15 : taactttgttattattttcacaataatcaaaactatcgacaataagtctagcattcataccaatatatcgaccttttatataggcagattgatcttttgatataacattatctaaaaagaattgcaaTCTT---GCTAA-TAC-AAAAGCTAAAAT-TTTAT-AA-TCTGTATTGG-TGAGGCTAAT-TGG-CCTAT-AA-TTA-TTAAGA--TGC--TCT
gi|21 : accaatatatcgccctcttatataggcagactgatattttgatataacattatctaaaatttgtttgtaatgtTCTTC--GCCAA-AGT-AAAAGAAAccccgcttt
gi|12 : attttttgtagccCTTA--GCCAAGAGT-AGTTGCAATTATCTTTAT-AA-TCAGTGTTTG-TTAAACTCAA-AGG-TCTGT-AA-TTT-TTTAAGTAAGT--TTCGTGTCCGCCTTTTTTT-A-TGAA----CAATTAA-----C--GTA----------------ATACTGACAATTTC----TTGAGT-ACA-G-----CC-ATCTCC---CCTT---GCTCGAATTATTTCCT-TAAGGCTTGGTAA--AA-GATA--GTAG-AA-ATT-GA-TTT----CCAAAA-GCATTATAGAAACTCAGA--TGGAATCCCATCCAAGACCTG--GCGACTT----TGATTACTTTTCAT
gi|7 : TTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTAT-GGG-TCTGT-AG-TTA-CCAAGG--AGG--TCTTTA-TCTCC-ATTTTT-G-TGTA----TCA--AA-----G--ATA----------------A----AACAGCCAATCT-TTGTGT-AAA-TGTTAAAC-AT-TCT---TCAT---AA---AAAGATTT-AT-CAA---CAGA-AGC-AA-AAAA--GTTA-TGTTTT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGCCTA--ACCCA--G-GACTCTTAATTATTACTCTTCATGTTGAATAAAGCACAACGATATTCTTCCATT--GTGAGT-GGA----GAATT----TAAGAAAA--TTTTATCATCATC-AGATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAG---TCT------------------------ACTGTAT-AATT-TCTGTCAAAACG--CATAC-------A--------------------ATCAT---CATTAT--T-TGAC-----AA-AA-CAGAATTATTt
gi|13 : TTC--GCTAA-AAC-ATGAGCAAATAT-TTTGT-AG-TCAATGTTTG-TAAGACTAAT-TGG-CCTAT-AA-TTT-TTAAGA--TTT--TCCTTA-TCCCC-TTTTTT-A-TATA----TCA--AA-----G--ATA----------------T----TACTGCATTTCT-TTGTGA-AAATGGT
gi|9 : ttgcgttctccccaatatatctacccctaatatatgcattttgttcataactaatcattctattagcaaccttttgtagacga--GCGAA-AAT-ATGTGCAA--AT-TTTGT-AA------ATTTG-TCAGACTAAT-AGG-CCTATTAA-TT--TCGGAG--AATCATCTTTT-TCACCATTTTTT-A-TGTA----TCA--GA-----GAAATAACTGAAAGTTTTTGAGA----AAAAGTCATTTTCTTGTTTGAAA-TGTTGAA--AT-T-----------------AGTGATTC-AT------------AG--AA---------TATTT-TTT-TAATCTCATTCCAGAATACTTTATA-GATTTCA-ATTGGGTATACCACCAG--ACCCAGCG-GA--T----TTGTTGTTTTCTATGTTagtatacctttatcaat
gi|4 : atttctatcgttaatatatgcggattggtctttgtttattaatctatctcaataactttttgtaatcttgta-AG--AATAAAA--ATGA-CT-TTT-TAATTCA-TTCCAAAATTTCGTATA-AAATTCTGA--TAGTATTCCATCGA--AACCA--G-GAGAT----TTGTTTTCTTTCATATCATGTAATGCAT--TTGTATATT--CATC--AAGAGT-TGA----AACTTGGTTTAACATAT--TTTTGTCATCATC-GCTTAAAA-CGTTTTCAAAAATTG--TATTTTGTAAA---------TAT--TCATTT-AATTCACTG-----TTTT-CTTCTTGATTTG-TA-----------TAT-AATT-TTTCATAATAGA--CACAC-------AT-----GGT-TTTTAAA-ATATCTT---CGTCTT--TATGT----------A-CAAGTTTATTTTTCTCATTTAGTAATTGCTTAATCGTATTT-----TTGTATTGACAACTCT----TTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTATAGtgtgcaaaattttgctaaatttgtca
gi|19 : tatatgatacatgtattgaaattacagataagcgttgtgaatatgtaagtgattctcgttcataggagcaatccatgca-AGATATAT-TTTTTTCTAAATCTA--TATTTGATTAA---------AAA--TC-TGT-AATTT-CTGAG---TCTC-CTAC---ATTTG-TA-----GAACAATAT-AATT-TCTGGTAAAATG--CATAC-------AT-----G-T-TATCAAGTATATCAT---CATTA
gi|16 : TTCTTTAGACTTATTATCAATCAGTAA-TGCAAGTTCA-GATTCT-AAATTTCGTTTTAAAATTTATATCAATGTTTCTAGAGTCTTT--CTTCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACA--ATGTTTTGGTAGTTTTACTTAATTTGG
gi|18 : CAGTAAATGCAAGTTCAAGATTCTGAAATTTCGTTT--AATTTCATATCAATGTTTCTAGAGT--TTTCTTCCCATTTT-GATATCCTGTTTTCT-AAATCAGAAAT-AGATG-GTTGGTAGTGTTACTTAATTT-GATGAATAATCAA
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ATTTTCCCAATAACACTGACCATTATATATGCTGACTGTTCATTCAATTAAGCCATCAATAATTTTATTTAACCTTTGGGCAAAATAAAAGCTACCATTTTGTAATAGTCAGATTGGTTATAACTAAGTGTGGTAGCTTTTTTCAGATATTAGGTCACCTTTTAAACAATAAAGCTGCTTACTGATATCTTTGCAAAACTCATTTTTCTTATTATGATAATTCAGTGTAAAGCAATCAATCTTCACTTGATAATATTCCAACAATTATTTAAAAAATTCCAGGTACATCATTAAGTAACCGGAAGTAGTATAACAATTTTTCATTACAAACACTAAGGCATCTTTTGAATCCAATTAGTATAGTCGTAGGTTTCATCACAAAACTCTTTTGACAATTTTTAATTGGTATCTTTATTAGACAGAATCATACTTATTTCATTCTGAATAAATTTTGAATCTGTA
Unaligned ( gi|8 ): ATTTTCACCAAAAAAAACCTACCCTTTATATAATGCTGACTGTTCTTTCCAATTAACCATCAATAATTTTTTTGTAACCTCTGGCAAAAATAAAAGCTACAATTTGTAATCAGTAAATGGTTAAACTAAGTGGTCCGATAGTTTTTCAGATATCTACGTCACCCTTTTAAACAATATATAGTGATTACCTGATATTCTTTGCGAAAAACTCAGTTTCTCTTTAATTGAAATATCACGTAAAGGCATTGCAACAACATCTCGCTTATATAAGTCCCAAATAACATTTATACAAATTCACTCCTGGTAATCCGTCAAATCCAGGAGATTTATTATTTTTCATTGCAAACACAGCTTTTTTGCATTTCTAGATGATAGTTAGCGCCGTTTCATCAACATAACTCTTCTTGACATTATTTAATTTTGGTAATCTTCTAACT
Unaligned ( gi|10 ): TGGTACCCTTTTCAAATGATAAAGTGATCAGCAATATTCTTTGCGAAAAACGTATCTTTTATTGAAATATCACTAATACCGTTGTAAACATTCCACTCATATAGTCCCAAAACATCTATGAAATTCACCAGGTAATCCATCAAGTACAGGAGATTGATTATTTTTCATTACAATCGCGGAAATTTTGCATTCTAATGTAGTCAATATTGCATCGCATTTAACTCTTCCACAATCATTCAATTTTGGAACCTCTAACATAGACAGATAATCGTCTATTTCATTAGAATTGCATGTAATTGATTTTGAACTGCATAAAC
Unaligned ( gi|11 ): CTATTGGTACCCCCTTTCAAATGATAAAGTGATCAGCCAATATTCTTTGCGAAAACGTATCTTTTTATGAAATTATCACCTAAATGACCGTTGTATAACATTCCACTCATATAGTCAAAACATCCTATGAAAATTCACCAGGTAATCCTCAAGTAAGGAGATTGAATTATTTTCATTACATCGCGGAAATTTTTGGCATTCTAATGTAGTATATTCGCATCGCATTTAATCTTCACAACATCTCATTTTGGAAACCTCTAACATCGACAGATTAATCGTCAATTCATTAGAATCTGCATG
Unaligned ( gi|14 ): ATTCATTCCAATATATTGACCTTTCATGTTGGCAGACTGATCTTTTGATATAACATTATCCAATATTTTATGCAATCTTCTTGCTAATACAAAAATCTCTTTAAATGAGGCTGAGTGGGCCATACTTATTCTGTTGCCTTTATTGACAGATAAACATTGTGAACATGTAAGTAACTATTTTTCATATGA
Unaligned ( gi|17 ): AAAATATCGACAATAGGTCTAGCATTCATACCAATATATCGACCTTTTATATAGGCAGATTGATCTTTTGATATAACATTATCTAAAAAAAATTTGTAATCTTCTTGCTAGCTAATACAAAAGATAAAATCTTATAATCTGTATT
Unaligned ( gi|20 ): GAGTCTCGCAGTTCATACCCAATATAACGTCCTTCTATATATGGCAGGTTTTGATTTCTCATTAATTATCCATGACTAAAAATACTGGCAAT
Alignments
lowQualScore : 1 1111 1 1111 111 11 44444444444444 111111111 1 1111 2222222222 222222222 111 222 444444444444 3333333333333333333 222222222 1 2222 55555 4444 33333333 1 1 11 2 1 2 111 22
lowQualScore : 55 4 4 77 4 4 4 4 1 1 66 4 4 5555 666666 777 0 4 777 66 0000 2 1 4 2 2 2 5 3 0 0000 777 66 1 22 3 11 5 5 5 11111111111111 5 66 555555555 0 2 5 5 0 66 1 33 66 66 5 33 0000 0 7 1 7 99 8888888888 99 66 2 5 77 222222222 77 5 5 5 5 000 0 5 1 000 5 777777777777 5 5 99 7777777777777777777 6666 666666666 3 1 8 8 0 1111 1 22 00000 3 2 2222 2 2 44444444 5 555 4 2 1 7 5 99 3 7 4 7 7 0 7 3 555 11 1 6
lowQualScore : .. . . .. . . . . . . .. . . .... ...... ... . . ... .. .... . . . . . . . . . .... ... .. . .. . .. . . . .............. . .. ......... . . . . . .. . .. .. .. . .. .... . . . . .. .......... .. .. . . .. ......... .. . . . . ... . . . ... . ............ . . .. ................... .... ......... . . . . . .... . .. ..... . . .... . . ........ . ... . . . . . .. . . . . . . . . ... .. . .
lowQualScore : 55 0 0 22 4 4 4 4 0 0 11 4 4 9999 888888 999 0 4 888 11 4444 9 0 4 6 2 6 2 9 0 6666 555 99 5 00 6 99 0 0 0 00000000000000 0 99 000000000 0 2 0 0 2 99 0 55 99 99 0 00 6666 7 3 0 3 22 7777777777 22 44 3 0 99 999999999 99 7 7 7 0 000 1 7 9 000 7 666666666666 7 7 22 7777777777777777777 5555 777777777 2 0 0 0 8 7777 0 00 00000 0 5 5555 5 5 55555555 5 555 0 5 0 3 3 77 3 3 0 3 3 7 3 7 333 33 0 7
consensus : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATCN--CC-TTTTTTA-TGTA---TCAAAGAT--AAA--ACAGNCAATCT-TTGTGNAAANGTTAAAC-ATT----CT---TCAT--AGAAANATTT--A-T-CA-AC-G-G---A--G-CAA-AAAA--GTTATGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG-TT-------AT-CAAGTATATCA---------TCATTATCTTGACAA-AA-CAGAATTATTTTT-C--ATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTTAAA-TTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATGT-TTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
Reference ( family-2639 ) : TCTTC--GCCAA-AGT-AAAAGCAANGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AA-TTA-CCGAGG--AGN-TCTTTATCN--CC-TTTTTTA-TGTA---TCAAAGAT--AAA--ACAGCCANTCT-TTGTGTAAANGTTAAAC-ATT----CT---TCAT--AAAANNATTT--A-T-CA-AC-G-G---A--G--AA-AAAA--GTTATGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNATACCGTCTA--ACCCA--G-GACTCTTG----TTACTCTTCATGTCGAATAAAGCACAACGGTATTTTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG-TT-------AT-CANGTATATCA---------TCATTATCTTGNCAA-AA-CAGAATTATTTTT-C--ATNCNNTAATTGCTTAATCGTATTT-----TTGTATTGACAACTC----TTTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTNTAGACTTATTATCAATCAGTAAATGCAAGTTCAAGATTCTGAAATTTCGTTTTAAANTTCATATCAATGTTTCTAGAGTCTTTTCCTCCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACAAGATGTNTTGGTAGTNTTACTTAATTTGGATGAATAATCAA
gi|1 : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAAG--AGT-TCTTTAACG--CC-CTTTTTA-TGTA---TAAAAGAT--AAA--ACAGTCCCTCT-TTGTGTAAAGGTTAAAC-ATT----CT---TCAT--ACAACGATTT--A-T-CA-ACCG-G---A--G--AA-AAAA--GTTATAT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----T-----TCTAAGAAAATTTT--ATCATCACCA-GATATAA-TTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAAT---CTTC-TAC---ATTTG-TA------GAACTATAT-AATT-TCTGGTAAAACG--CATACG----TG-CT-------AT-CAAGTATATCA---------TTATTAT-TTGTCAA-AA-CAGAATTA-TTTT-C--ATTCTTTAATTGTTTAATTGTATTTGAAGCTTGTCTTTGTGACTCCAGTCTTTAAAAATACAAAGAAT-T------ATTTTCC-CCTCGTTCTGTCCAGTTCGCCCTTGATCTTATCTGAGCTCCTTTAGACTTATTATCGATCAGT-ACTGCAAGTTC-GGATTCT-AAATTTTGTTTTAAA-TTCATATCAATATCTATAAAGTCTTTTCCTTCTATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATGT-TTGGTGGTTTTATTCAATTTGGGTGAATAATCAA
gi|12 : CTTA--GCCAAGAGT-AGTTGCAATTATCTTTAT-AA-TCAGTGTTTG-TTAAACTCAAAGG--TCTGT-AA-TTT-TTTAAGTAAGT-TTCGTGTCCGCCT-TTTTTTA-TGAACAATTAACG-T--AAT--ACTGACAATTTCTTGAGTA-----CAGCC-ATCTCCCCT---TGCT--CGAATTATTT--CCT-TA-A--G-G---CTTG--GT-AAAA--GATA-GTAGAAATT-GA-TTTC----CAAAA-GCATTATAGAAACTCAGA--TGGAATCCCATCCAAGACCTG--GCGACTTTGA----TTACTTTTCAT
gi|13 : TTC--GCTAA-AAC-ATGAGCAAATAT-TTTGT-AG-TCAATGTTTG-TAAGACTAATTGG--CCTAT-AA-TTT-TTAAGA--TTT-TCCTTATCC--CC-TTTTTTA-TATA---TCAAAGAT--ATT--ACTGCATTTCT-TTGTGAAAATGGTAt
gi|15 : ttgcgttctccccaatatatctacccctaatatatgcattttgttcataactaatcattctattagcaaccttttgtagacgaTCTT---GCTAA-TAC-AAAAGCTAAAAT-TTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--CCTAT-AA-TTA-TTAAGA--TGC-TCTgtatacctttatcaat
gi|16 : accaatatatcgccctcttatataggcagactgatattttgatataacattatctaaaatttgtttgtaatgtCTTTAGACTTATTATCAATCAGTAA-TGCAAGTTCA-GATTCT-AAATTTCGTTTTAAAATTTATATCAATGTTTCTAGAGTCTTT--CTTCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACA--ATGTTTTGGTAGTTTTACTTAATTTGccccgcttt
gi|18 : ttCAGTAAATGCAAGTTCAAGATTCTGAAATTTCGTTT--AATTTCATATCAATGTTTCTAGAG--TTTTCTTCCCA-TTTTGATATCCTGTTTTCT-AAATCAGAAAT-AGATG-GTTGGTAGTGTTACTTAATTT-GATGAATAATCAA
gi|19 : -GATATA-TTTTTTTCTAAATCTA--TATTTGATTAA---------AAA--TC-TGT-AATTT-CTGAGT---CTCC-TAC---ATTTG-TA------GAACAATAT-AATT-TCTGGTAAAATG--CATACA----TG-TT-------AT-CAAGTATATCA---------TCATTAt
gi|2 : aTCTTC--GCCAA-AGTTAAAAGCAATGCT-TTTATCAGCTCTGTGTTTGCTAAGACTCATTGGGCTCTGT-AGCTTAGCCAAGG--AGG-TCTGTATCC--CCCTTTTTTACTGTA---TCAAAGAT--ACA--ACAGCCAATCT-TTGTGTAAAAGTTAA-C-ATT----CT---TCATTAAAAAACAATT--A-T-CACAC-A-G---A--ATCAA-AAAA--GTTATGT-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GG-CAGACCGTCTA--ACC-A--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACG-CATTTCTCCATTTCGTGAGTGGAGA----A-----TCTAAGAAAATTTTTTATCATCATCAAGATATAATTTTTTTCAAAATTTAACCATT-GATAAA---------AAGCTTC-TGA-A-TTT-CTGAGTGTTCTTCCTAC---ATTTGCTACC----G-ACTATATCAATTCTCTGGTAAAACG--CATACA----AG-TT-------AT-CACGTATATCA---------TCATTATCTTGACAATAATCAGAATTATTTTTGC--ATGCTTTA
gi|21 : cttgcatttattcctatatctacctttaatgtaacgctgacctgatcatttggcattaacttatcttattattttttgtagccTCTTC--GCCAA-AGT-AAAAGAAA
gi|3 : attttttgtagccTCTTCTTGCTAA-TAC-AAAAACTAAAAT-CTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--TCTAT-AA-TTA-ATGAGA--TGC-CTTTTATCA--CC-TTTCTTA-TATA-------ATATTGAAATTACAGATAAACG-TTGTGAATATGT-AAGTGATT----CTCTTTCAT--AGGAGCATTCC-A-TGCA-A----G---A--A--AA-CAAATGGTT---C-----TT-TAACTCA-TTCCAAAATGTCTTATA-AAATGTTGC--TGGTATTCCATCTA--AACCA--G-GAGATTTG----TTTTCTTTCATATCAAATAATGCAT--TGGTATATT--CAT--CAAGAGTTG-GA----ACTTGGTTTGACATATTTTT--GTCATCAACG-CTTAAAACATTTT-CAAAAATTG--TATTTTGTAAATATTTATTCAAT--TC---ACAATTT-CTG--T---TTTC-TTCTTGATTTG-TA------------TAT-AATT-TTTCATAA
gi|4 : taactttgttattattttcacaataatcaaaactatcgacaataagtctagcattcataccaatatatcgaccttttatataggcagattgatcttttgatataacattatctaaaaagaattgcaaA-TGTA---TTGAAATT--A-----CAGATAAGCG-TTGTGAATATGT-AAGTGATT----CTCGTTCAT--AGGAGCA-----A-T-CC-AT-GCA---A--G--AATAAAA--ATGACTT-----TT-TAATTCA-TTCCAAAATTTCGTATA-AAATTCTGA--TAGTATTCCATCGA--AACCA--G-GAGATTTG----TTTTCTTTCATATCATGTAATGCAT--TTGTATATT--CAT--CAAGAGTTGAAACTTGG-----TTTAACATATTTTT--GTCATCATCG-CTTAAAACGTTTT-CAAAAATTG--TATTTTGTAAA---------TAT--TCATTT-AATTCACTG--T---TTTC-TTCTTGATTTG-TA------------TAT-AATT-TTTCATAATAGA--CACACA----TGGTT-------TT-TAAA-ATATCT---------TCGTCTTTATGT-----A-CAAGTTTATTTTT-CTCATTTAGTAATTGCTTAATCGTATTT-----TTGTATTGACAACTC----TTTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTATAG
gi|5 : tatatgatacTCTTC--GCCAA-AGT-AAAAGCAATGCT-TTTAT-AG-TCTGTGTTTG-TAAGACTCATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATCT--CC-CTTTTTA-TGTA---TCAAAGAT--AAA--ACAGCCAATCT-TTGTGTAAAAGTTAAAC-ATT----CT---TCAT--AAAAAAAATT--A-T-CA-AC-A-G---A--ATCAA-AAAA--GTTATGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GGGCAGACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--AATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TACGNNNNN-NNNNNNN-NNNN-NNNNNNNNNACGACTATATAATTCTG-GTAAAACGCATACATGT-TATCACGTATATCATCATTATCTTGACAA-AA-CAGAATTATTTT
gi|7 : TTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATCT--CC-ATTTTTG-TGTA---TCAAAGAT--AAA--ACAGCCAATCT-TTGTGTAAATGTTAAAC-ATT----CT---TCAT--AAAAAGATTT--A-T-CA-AC-A-G---A--AGCAA-AAAA--GTTATGT-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGCCTA--ACCCA--G-GACTCTTAATTATTACTCTTCATGTTGAATAAAGCACAACGATATTCTTCCAT--TGTGAGTGGAGA----A-----TTTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CT-------------------------ACTGTAT-AATT-TCTGTCAAAACG--CATACA--------------------------ATCA---------TCATTAT-TTGACAA-AA-CAGAATTATTca
gi|9 : --GCGAA-AAT-ATGTGCAA--AT-TTTGT-AA------ATTTG-TCAGACTAATAGG--CCTATTAA-TTT-CGGAGA--ATCATCTTTTTCA--CCATTTTTTA-TGTA---TCAGAGAA--ATA--ACTGAAAGTTT-TTGAGAAAAAGTC--AT-TTT----CT---TGTT--TGAAATGTTGAAA-T-TA-GT-G-ATTCA--T--AG-AATA--TTT---T-----TT-TAATCTCATTCCAGAATACTTTATA-GATTTCA-ATTGGGTATACCACCAG--ACCCAGCG-GA--TTTG----TTGTTTTCTATGT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTTTCCCAATAACACTGACCATTATATATGCTGACTGTTCATTCAATTAAGCCATCAATAATTTTATTTAACCTTTGGGCAAAATAAAAGCTACCATTTTGTAATAGTCAGATTGGTTATAACTAAGTGTGGTAGCTTTTTTCAGATATTAGGTCACCTTTTAAACAATAAAGCTGCTTACTGATATCTTTGCAAAACTCATTTTTCTTATTATGATAATTCAGTGTAAAGCAATCAATCTTCACTTGATAATATTCCAACAATTATTTAAAAAATTCCAGGTACATCATTAAGTAACCGGAAGTAGTATAACAATTTTTCATTACAAACACTAAGGCATCTTTTGAATCCAATTAGTATAGTCGTAGGTTTCATCACAAAACTCTTTTGACAATTTTTAATTGGTATCTTTATTAGACAGAATCATACTTATTTCATTCTGAATAAATTTTGAATCTGTA
Unaligned ( gi|8 ): ATTTTCACCAAAAAAAACCTACCCTTTATATAATGCTGACTGTTCTTTCCAATTAACCATCAATAATTTTTTTGTAACCTCTGGCAAAAATAAAAGCTACAATTTGTAATCAGTAAATGGTTAAACTAAGTGGTCCGATAGTTTTTCAGATATCTACGTCACCCTTTTAAACAATATATAGTGATTACCTGATATTCTTTGCGAAAAACTCAGTTTCTCTTTAATTGAAATATCACGTAAAGGCATTGCAACAACATCTCGCTTATATAAGTCCCAAATAACATTTATACAAATTCACTCCTGGTAATCCGTCAAATCCAGGAGATTTATTATTTTTCATTGCAAACACAGCTTTTTTGCATTTCTAGATGATAGTTAGCGCCGTTTCATCAACATAACTCTTCTTGACATTATTTAATTTTGGTAATCTTCTAACT
Unaligned ( gi|10 ): TGGTACCCTTTTCAAATGATAAAGTGATCAGCAATATTCTTTGCGAAAAACGTATCTTTTATTGAAATATCACTAATACCGTTGTAAACATTCCACTCATATAGTCCCAAAACATCTATGAAATTCACCAGGTAATCCATCAAGTACAGGAGATTGATTATTTTTCATTACAATCGCGGAAATTTTGCATTCTAATGTAGTCAATATTGCATCGCATTTAACTCTTCCACAATCATTCAATTTTGGAACCTCTAACATAGACAGATAATCGTCTATTTCATTAGAATTGCATGTAATTGATTTTGAACTGCATAAAC
Unaligned ( gi|11 ): CTATTGGTACCCCCTTTCAAATGATAAAGTGATCAGCCAATATTCTTTGCGAAAACGTATCTTTTTATGAAATTATCACCTAAATGACCGTTGTATAACATTCCACTCATATAGTCAAAACATCCTATGAAAATTCACCAGGTAATCCTCAAGTAAGGAGATTGAATTATTTTCATTACATCGCGGAAATTTTTGGCATTCTAATGTAGTATATTCGCATCGCATTTAATCTTCACAACATCTCATTTTGGAAACCTCTAACATCGACAGATTAATCGTCAATTCATTAGAATCTGCATG
Unaligned ( gi|14 ): ATTCATTCCAATATATTGACCTTTCATGTTGGCAGACTGATCTTTTGATATAACATTATCCAATATTTTATGCAATCTTCTTGCTAATACAAAAATCTCTTTAAATGAGGCTGAGTGGGCCATACTTATTCTGTTGCCTTTATTGACAGATAAACATTGTGAACATGTAAGTAACTATTTTTCATATGA
Unaligned ( gi|17 ): AAAATATCGACAATAGGTCTAGCATTCATACCAATATATCGACCTTTTATATAGGCAGATTGATCTTTTGATATAACATTATCTAAAAAAAATTTGTAATCTTCTTGCTAGCTAATACAAAAGATAAAATCTTATAATCTGTATT
Unaligned ( gi|20 ): GAGTCTCGCAGTTCATACCCAATATAACGTCCTTCTATATATGGCAGGTTTTGATTTCTCATTAATTATCCATGACTAAAAATACTGGCAAT
Alignments
lowQualScore : 1 1111 1 1111 111 11 333333333333 11111 1 1111 2222222222 222222222 111 222 44444444444 44444444444444444444 111111 111 1 1111 22222 2222 33333333 1 1 11 1 1 1 11 1
lowQualScore : 55 4 4 77 4 4 4 4 1 1 66 4 4 5555 666666 777 0 4 777 66 0000 5 4 4 1 2 2 5 3 0 0000 777 66 22 3 66 5 5 555555555555 5 6 555 22222 0 2 77 5 0 66 1 11 66 66 5 33 0000 0 7 1 7 99 8888888888 99 66 1 3 77 222222222 77 5 5 5 1 000 0 5 1 000 66666666666 5 5 99 00000000000000000000 3 3 6 999999 111 5 0 1 8 8 0 8888 66666 1 1 3333 2 1 44444444 5 1 2 1 1 3 99 3 7 3 7 7 7 3 44 3 6
lowQualScore : .. . . .. . . . . . . .. . . .... ...... ... . . ... .. .... . . . . . . . . . .... ... .. .. . .. . . ............ . . ... ..... . . .. . . .. . .. .. .. . .. .... . . . . .. .......... .. .. . . .. ......... .. . . . . ... . . . ... ........... . . .. .................... . . . ...... ... . . . . . . .... ..... . . .... . . ........ . . . . . . .. . . . . . . . .. . .
lowQualScore : 55 0 0 00 4 4 4 4 0 0 11 4 4 9999 888888 999 0 4 888 11 4444 3 4 4 0 2 6 2 9 0 6666 555 99 00 6 99 0 0 555555555555 0 5 444 55555 0 2 55 0 2 99 0 55 99 99 0 00 6666 7 3 0 3 22 7777777777 22 44 7 9 99 999999999 99 7 7 7 4 000 1 7 9 000 66666666666 7 7 22 22222222222222222222 3 2 7 222222 777 0 8 0 0 0 8 1111 00000 0 0 5555 5 0 55555555 5 0 5 0 0 3 33 3 3 3 3 3 3 3 77 3 7
consensus : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANATTT--AT-CA-A-CGG---A-G-CAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
Reference ( family-2639 ) : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANATTT--AT-CA-A-CGG---A-G-CAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
gi|1 : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAAG--AGT-TCTTTAAC--GCC-CTTTTTA-TGTATAA---AAGAT--AAA--ACAGTCC-CTCT-TTGTGTAAAGGTTAAAC-AT----TCT---TCAT--ACAACGATTT--AT-CA-ACCGG---A-G--AA-AAAAGTTA-TAT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----T-----TCTAAGAAAATTTT--ATCATCACCA-GATATAA-TTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAAT---CTTC-TAC---ATTTG-TA------GAACTATAT-AATT-TCTGGTAAAACG--CATACG----TG--CT-------AT-CAAGTATA-TCA------TTAT---TAT-TTGTCAA-AA-CAGAATTA-TTT--T-CATTCTTTAATTGTTTAATTGTATTTGAAGCTTGTCTTTGTGACTCCAGTCTTTAAAAATACAAAGAAT-T------ATTTTCC-CCTCGTTCTGTCCAGTTCGCCCTTGATCTTATCTGAGCTCCTTTAGACTTATTATCGATCAGTAC-TGCAAGTTC-GGATTCT-AAATTTTGTTTT-AAATTCATATCAATATCTATAAAGTCTTTTCCTTCTATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTGGTTTTATTCAATTTGGGTGAATAATCAA
gi|12 : CTTA--GCCAAGAGT-AGTTGCAATTATCTTTAT-AA-TCAGTGTTTG-TTAAACTCAAAGG--TCTGT-AA-TTT-TTTAAGTAAGT-TTCGTGTCCGCCT-TTTTTTA-TG-AACAATTAACGT--AAT--ACTGACA-ATTTCTTGAGTA-----CAGCC-ATCTCCCCT---TGCT--CGAATTATTTC-CT-TA-A--GGCTTG-G-TAA-AAGA--TA--GTAGAAATT-GA-TTT----CCAAAA-GCATTATAGAAACTCAGA--TGGAATCCCATCCAAGACCTG--GCGACTTTGA----TTACTTTTCAT
gi|13 : TTC--GCTAA-AAC-ATGAGCAAATAT-TTTGT-AG-TCAATGTTTG-TAAGACTAATTGG--CCTAT-AA-TTT-TTAAGA--TTT-TCCTTATC--CCC-TTTTTTA-TATATCA---AAGAT--ATT--ACTG-CATTTCT-TTGTGAAAATGGTAt
gi|15 : ttgcgttctccccaatatatctacccctaatatatgcattttgttcataactaatcattctattagcaaccttttgtagacgaTCTT---GCTAA-TAC-AAAAGCTAAAAT-TTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--CCTAT-AA-TTA-TTAAGA--TGC-TCTgtatacctttatcaat
gi|16 : accaatatatcgccctcttatataggcagactgatattttgatataacattatctaaaatttgtttgtaatgtCTTTAGACTTATTATCAATCAGTAA-TGCAAGTTCA-GATTCT-AAATTTCGTTTTAAAATTTATATCAATGTTTCTAGAGTCTTT--CTTCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACA--ATGTTTTGGTAGTTTTACTTAATTTGccccgcttt
gi|18 : ttCAGTAAATGCAAGTTCAAGATTCTGAAATTTCG-TTT-AATTTCATATCAATGTTTCTAGAG--TTTTCTTCCCA-TTTTGATATCCTGTTTTCT-AAATCAGAAAT-AGATG-GTTGGTAGTGTTACTTAATTT-GATGAATAATCAA
gi|19 : -GATATA-TTTTTTTCTAAATCTA--TATTTGATTAA---------AAA--TC-TGT-AATTT-CTGAGT---CTCC-TAC---ATTTG-TA------GAACAATAT-AATT-TCTGGTAAAATG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TAt
gi|2 : aTCTTC--GCCAA-AGTTAAAAGCAATGCT-TTTATCAGCTCTGTGTTTGCTAAGACTCATTGGGCTCTGT-AGCTTAGCCAAGG--AGG-TCTGTATC--CCCCTTTTTTACTGTATCA---AAGAT--ACA--ACAGCCA-ATCT-TTGTGTAAAAGTTAA-C-AT----TCT---TCATTAAAAAACAATT--AT-CACA-CAG---A-ATCAA-AAAAGTTA-TGT-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GG-CAGACCGTCTA--ACC-A--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACG-CATTTCTCCATTTCGTGAGTGGAGA----A-----TCTAAGAAAATTTTTTATCATCATCAAGATATAATTTTTTTCAAAATTTAACCATT-GATAAA---------AAGCTTC-TGA-A-TTT-CTGAGTGTTCTTCCTAC---ATTTGCTACC----G-ACTATATCAATTCTCTGGTAAAACG--CATACA----AG--TT-------AT-CACGTATA-TCA------TCAT---TATCTTGACAATAATCAGAATTATTTT--TGCATGCTTTA
gi|21 : cttgcatttattcctatatctacctttaatgtaacgctgacctgatcatttggcattaacttatcttattattttttgtagccTCTTC--GCCAA-AGT-AAAAGAAA
gi|3 : attttttgtagccTCTTCTTGCTAA-TAC-AAAAACTAAAAT-CTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--TCTAT-AA-TTA-ATGAGA--TGC-CTTTTATC--ACC-TTTCTTA-TATA-------ATATTGAAATTACAGATA-AACG-TTGTGAATATGT-AAGTGAT----TCTCTTTCAT--AGGAGCATTCC-ATGCA-A---G---A----AA-ACAAATGG-TTC-----TT-TAACTCA-TTCCAAAATGTCTTATA-AAATGTTGC--TGGTATTCCATCTA--AACCA--G-GAGATTTG----TTTTCTTTCATATCAAATAATGCAT--TGGTATATT--CAT--CAAGAGTTG-GA----ACTTGGTTTGACATATTTTT--GTCATCAACG-CTTAAAACATTTT-CAAAAATTG--TATTTTGTAAATATTTATTCAAT--TC---ACAATTT-CTG--T---TTTC-TTCTTGATTTG-TA------------TAT-AATT-TTTCATAA
gi|4 : taactttgttattattttcacaataatcaaaactatcgacaataagtctagcattcataccaatatatcgaccttttatataggcagattgatcttttgatataacattatctaaaaagaattgcaaA-TGTATTG---AAATT--A-----CAGATA-AGCG-TTGTGAATATGT-AAGTGAT----TCTCGTTCAT--AGGAGCA-----AT-CC-A-TGC---A-A-GAATAAAAATGA-CTT-----TT-TAATTCA-TTCCAAAATTTCGTATA-AAATTCTGA--TAGTATTCCATCGA--AACCA--G-GAGATTTG----TTTTCTTTCATATCATGTAATGCAT--TTGTATATT--CAT--CAAGAGTTGAAACTTGG-----TTTAACATATTTTT--GTCATCATCG-CTTA-AAACGTTTTCAAAAATTG--TATTTTGTAAA---------TAT--TCATTT-AATTCACT--GT---TTTC-TTCTTGATTTG-------------TATAT-AATT-TTTCATAATAGA--CACACA----TGGTTT-------TT-AAAATATCTTCG------TCTT---TATGT--------A-CAAGTTTATTTTTCT-CATTTAGTAATTGCTTAATCGTATTT-----TTGTATTGACAACTC----TTTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTATAG
gi|5 : tatatgatacTCTTC--GCCAA-AGT-AAAAGCAATGCT-TTTAT-AG-TCTGTGTTTG-TAAGACTCATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATC--TCC-CTTTTTA-TGTATCA---AAGAT--AAA--ACAGCCA-ATCT-TTGTGTAAAAGTTAAAC-AT----TCT---TCAT--AAAAAAAATT--AT-CA-A-CAG---A-ATCAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GGGCAGACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--AATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TACGNNNNN-NNNNNNN-NNNN-NNNNNNNNNACGACTATATAATTCTG--GTAAAACGCATACATGT-TA-TCACGTATATCATCATTATCTTGACAA-AA-CAGAATTATTTT--
gi|7 : TTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATC--TCC-ATTTTTG-TGTATCA---AAGAT--AAA--ACAGCCA-ATCT-TTGTGTAAATGTTAAAC-AT----TCT---TCAT--AAAAAGATTT--AT-CA-A-CAG---AAG-CAA-AAAAGTTA-TGT-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGCCTA--ACCCA--G-GACTCTTAATTATTACTCTTCATGTTGAATAAAGCACAACGATATTCTTCCAT--TGTGAGTGGAGA----A-----TTTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CT-------------------------ACTGTAT-AATT-TCTGTCAAAACG--CATACA---------------------------A-TCA------TCAT---TAT-TTGACAA-AA-CAGAATTATTca
gi|9 : --GCGAA-AAT-ATGTGCAA--AT-TTTGT-AA------ATTTG-TCAGACTAATAGG--CCTATTAA-TTT-CGGAGA--ATCATCTTTTTC--ACCATTTTTTA-TGTATCA---GAGAA--ATA--ACTGAAA-GTTT-TTGAGAAAAAGTC--AT-TT----TCT---TGTT--TGAAATGTTGAAAT-TA-G-TGA---T-T-CAT-AGAA--TATTTT-----TT-TAATCTCATTCCAGAATACTTTATA-GATTTCA-ATTGGGTATACCACCAG--ACCCAGCG-GA--TTTG----TTGTTTTCTATGT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTTTCCCAATAACACTGACCATTATATATGCTGACTGTTCATTCAATTAAGCCATCAATAATTTTATTTAACCTTTGGGCAAAATAAAAGCTACCATTTTGTAATAGTCAGATTGGTTATAACTAAGTGTGGTAGCTTTTTTCAGATATTAGGTCACCTTTTAAACAATAAAGCTGCTTACTGATATCTTTGCAAAACTCATTTTTCTTATTATGATAATTCAGTGTAAAGCAATCAATCTTCACTTGATAATATTCCAACAATTATTTAAAAAATTCCAGGTACATCATTAAGTAACCGGAAGTAGTATAACAATTTTTCATTACAAACACTAAGGCATCTTTTGAATCCAATTAGTATAGTCGTAGGTTTCATCACAAAACTCTTTTGACAATTTTTAATTGGTATCTTTATTAGACAGAATCATACTTATTTCATTCTGAATAAATTTTGAATCTGTA
Unaligned ( gi|8 ): ATTTTCACCAAAAAAAACCTACCCTTTATATAATGCTGACTGTTCTTTCCAATTAACCATCAATAATTTTTTTGTAACCTCTGGCAAAAATAAAAGCTACAATTTGTAATCAGTAAATGGTTAAACTAAGTGGTCCGATAGTTTTTCAGATATCTACGTCACCCTTTTAAACAATATATAGTGATTACCTGATATTCTTTGCGAAAAACTCAGTTTCTCTTTAATTGAAATATCACGTAAAGGCATTGCAACAACATCTCGCTTATATAAGTCCCAAATAACATTTATACAAATTCACTCCTGGTAATCCGTCAAATCCAGGAGATTTATTATTTTTCATTGCAAACACAGCTTTTTTGCATTTCTAGATGATAGTTAGCGCCGTTTCATCAACATAACTCTTCTTGACATTATTTAATTTTGGTAATCTTCTAACT
Unaligned ( gi|10 ): TGGTACCCTTTTCAAATGATAAAGTGATCAGCAATATTCTTTGCGAAAAACGTATCTTTTATTGAAATATCACTAATACCGTTGTAAACATTCCACTCATATAGTCCCAAAACATCTATGAAATTCACCAGGTAATCCATCAAGTACAGGAGATTGATTATTTTTCATTACAATCGCGGAAATTTTGCATTCTAATGTAGTCAATATTGCATCGCATTTAACTCTTCCACAATCATTCAATTTTGGAACCTCTAACATAGACAGATAATCGTCTATTTCATTAGAATTGCATGTAATTGATTTTGAACTGCATAAAC
Unaligned ( gi|11 ): CTATTGGTACCCCCTTTCAAATGATAAAGTGATCAGCCAATATTCTTTGCGAAAACGTATCTTTTTATGAAATTATCACCTAAATGACCGTTGTATAACATTCCACTCATATAGTCAAAACATCCTATGAAAATTCACCAGGTAATCCTCAAGTAAGGAGATTGAATTATTTTCATTACATCGCGGAAATTTTTGGCATTCTAATGTAGTATATTCGCATCGCATTTAATCTTCACAACATCTCATTTTGGAAACCTCTAACATCGACAGATTAATCGTCAATTCATTAGAATCTGCATG
Unaligned ( gi|14 ): ATTCATTCCAATATATTGACCTTTCATGTTGGCAGACTGATCTTTTGATATAACATTATCCAATATTTTATGCAATCTTCTTGCTAATACAAAAATCTCTTTAAATGAGGCTGAGTGGGCCATACTTATTCTGTTGCCTTTATTGACAGATAAACATTGTGAACATGTAAGTAACTATTTTTCATATGA
Unaligned ( gi|17 ): AAAATATCGACAATAGGTCTAGCATTCATACCAATATATCGACCTTTTATATAGGCAGATTGATCTTTTGATATAACATTATCTAAAAAAAATTTGTAATCTTCTTGCTAGCTAATACAAAAGATAAAATCTTATAATCTGTATT
Unaligned ( gi|20 ): GAGTCTCGCAGTTCATACCCAATATAACGTCCTTCTATATATGGCAGGTTTTGATTTCTCATTAATTATCCATGACTAAAAATACTGGCAAT
Alignments
lowQualScore : 1 1111 1 1111 111 11 333333333333 11111 1 1111 2222222222 222222222 111 222 44444444444 44444444444444444444 111111 111 1 1111 22222 2222 33333333 1 1 11 1 1 1 11 1
lowQualScore : 55 4 4 77 4 4 4 4 1 1 66 4 4 5555 666666 777 0 4 777 66 0000 5 4 4 1 2 2 5 3 0 0000 777 66 22 3 66 5 5 555555555555 5 6 555 22222 0 2 77 5 0 66 1 11 66 66 5 33 0000 0 7 1 7 99 8888888888 99 66 1 3 77 222222222 77 5 5 5 1 000 0 5 1 000 66666666666 5 5 99 00000000000000000000 3 3 6 999999 111 5 0 1 8 8 0 8888 66666 1 1 3333 2 1 44444444 5 1 2 1 1 3 99 3 7 3 7 7 7 3 44 3 6
lowQualScore : .. . . .. . . . . . . .. . . .... ...... ... . . ... .. .... . . . . . . . . . .... ... .. .. . .. . . ............ . . ... ..... . . .. . . .. . .. .. .. . .. .... . . . . .. .......... .. .. . . .. ......... .. . . . . ... . . . ... ........... . . .. .................... . . . ...... ... . . . . . . .... ..... . . .... . . ........ . . . . . . .. . . . . . . . .. . .
lowQualScore : 55 0 0 00 4 4 4 4 0 0 11 4 4 9999 888888 999 0 4 888 11 4444 3 4 4 0 2 6 2 9 0 6666 555 99 00 6 99 0 0 555555555555 0 5 444 55555 0 2 55 0 2 99 0 55 99 99 0 00 6666 7 3 0 3 22 7777777777 22 44 7 9 99 999999999 99 7 7 7 4 000 1 7 9 000 66666666666 7 7 22 22222222222222222222 3 2 7 222222 777 0 8 0 0 0 8 1111 00000 0 0 5555 5 0 55555555 5 0 5 0 0 3 33 3 3 3 3 3 3 3 77 3 7
consensus : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANATTT--AT-CA-A-CGG---A-G-CAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
Reference ( family-2639 ) : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANATTT--AT-CA-A-CGG---A-G-CAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
gi|1 : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAAG--AGT-TCTTTAAC--GCC-CTTTTTA-TGTATAA---AAGAT--AAA--ACAGTCC-CTCT-TTGTGTAAAGGTTAAAC-AT----TCT---TCAT--ACAACGATTT--AT-CA-ACCGG---A-G--AA-AAAAGTTA-TAT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----T-----TCTAAGAAAATTTT--ATCATCACCA-GATATAA-TTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAAT---CTTC-TAC---ATTTG-TA------GAACTATAT-AATT-TCTGGTAAAACG--CATACG----TG--CT-------AT-CAAGTATA-TCA------TTAT---TAT-TTGTCAA-AA-CAGAATTA-TTT--T-CATTCTTTAATTGTTTAATTGTATTTGAAGCTTGTCTTTGTGACTCCAGTCTTTAAAAATACAAAGAAT-T------ATTTTCC-CCTCGTTCTGTCCAGTTCGCCCTTGATCTTATCTGAGCTCCTTTAGACTTATTATCGATCAGTAC-TGCAAGTTC-GGATTCT-AAATTTTGTTTT-AAATTCATATCAATATCTATAAAGTCTTTTCCTTCTATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTGGTTTTATTCAATTTGGGTGAATAATCAA
gi|12 : CTTA--GCCAAGAGT-AGTTGCAATTATCTTTAT-AA-TCAGTGTTTG-TTAAACTCAAAGG--TCTGT-AA-TTT-TTTAAGTAAGT-TTCGTGTCCGCCT-TTTTTTA-TG-AACAATTAACGT--AAT--ACTGACA-ATTTCTTGAGTA-----CAGCC-ATCTCCCCT---TGCT--CGAATTATTTC-CT-TA-A--GGCTTG-G-TAA-AAGA--TA--GTAGAAATT-GA-TTT----CCAAAA-GCATTATAGAAACTCAGA--TGGAATCCCATCCAAGACCTG--GCGACTTTGA----TTACTTTTCAT
gi|13 : TTC--GCTAA-AAC-ATGAGCAAATAT-TTTGT-AG-TCAATGTTTG-TAAGACTAATTGG--CCTAT-AA-TTT-TTAAGA--TTT-TCCTTATC--CCC-TTTTTTA-TATATCA---AAGAT--ATT--ACTG-CATTTCT-TTGTGAAAATGGTAt
gi|15 : ttgcgttctccccaatatatctacccctaatatatgcattttgttcataactaatcattctattagcaaccttttgtagacgaTCTT---GCTAA-TAC-AAAAGCTAAAAT-TTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--CCTAT-AA-TTA-TTAAGA--TGC-TCTgtatacctttatcaat
gi|16 : accaatatatcgccctcttatataggcagactgatattttgatataacattatctaaaatttgtttgtaatgtCTTTAGACTTATTATCAATCAGTAA-TGCAAGTTCA-GATTCT-AAATTTCGTTTTAAAATTTATATCAATGTTTCTAGAGTCTTT--CTTCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACA--ATGTTTTGGTAGTTTTACTTAATTTGccccgcttt
gi|18 : ttCAGTAAATGCAAGTTCAAGATTCTGAAATTTCG-TTT-AATTTCATATCAATGTTTCTAGAG--TTTTCTTCCCA-TTTTGATATCCTGTTTTCT-AAATCAGAAAT-AGATG-GTTGGTAGTGTTACTTAATTT-GATGAATAATCAA
gi|19 : -GATATA-TTTTTTTCTAAATCTA--TATTTGATTAA---------AAA--TC-TGT-AATTT-CTGAGT---CTCC-TAC---ATTTG-TA------GAACAATAT-AATT-TCTGGTAAAATG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TAt
gi|2 : aTCTTC--GCCAA-AGTTAAAAGCAATGCT-TTTATCAGCTCTGTGTTTGCTAAGACTCATTGGGCTCTGT-AGCTTAGCCAAGG--AGG-TCTGTATC--CCCCTTTTTTACTGTATCA---AAGAT--ACA--ACAGCCA-ATCT-TTGTGTAAAAGTTAA-C-AT----TCT---TCATTAAAAAACAATT--AT-CACA-CAG---A-ATCAA-AAAAGTTA-TGT-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GG-CAGACCGTCTA--ACC-A--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACG-CATTTCTCCATTTCGTGAGTGGAGA----A-----TCTAAGAAAATTTTTTATCATCATCAAGATATAATTTTTTTCAAAATTTAACCATT-GATAAA---------AAGCTTC-TGA-A-TTT-CTGAGTGTTCTTCCTAC---ATTTGCTACC----G-ACTATATCAATTCTCTGGTAAAACG--CATACA----AG--TT-------AT-CACGTATA-TCA------TCAT---TATCTTGACAATAATCAGAATTATTTT--TGCATGCTTTA
gi|21 : cttgcatttattcctatatctacctttaatgtaacgctgacctgatcatttggcattaacttatcttattattttttgtagccTCTTC--GCCAA-AGT-AAAAGAAA
gi|3 : attttttgtagccTCTTCTTGCTAA-TAC-AAAAACTAAAAT-CTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--TCTAT-AA-TTA-ATGAGA--TGC-CTTTTATC--ACC-TTTCTTA-TATA-------ATATTGAAATTACAGATA-AACG-TTGTGAATATGT-AAGTGAT----TCTCTTTCAT--AGGAGCATTCC-ATGCA-A---G---A----AA-ACAAATGG-TTC-----TT-TAACTCA-TTCCAAAATGTCTTATA-AAATGTTGC--TGGTATTCCATCTA--AACCA--G-GAGATTTG----TTTTCTTTCATATCAAATAATGCAT--TGGTATATT--CAT--CAAGAGTTG-GA----ACTTGGTTTGACATATTTTT--GTCATCAACG-CTTAAAACATTTT-CAAAAATTG--TATTTTGTAAATATTTATTCAAT--TC---ACAATTT-CTG--T---TTTC-TTCTTGATTTG-TA------------TAT-AATT-TTTCATAA
gi|4 : taactttgttattattttcacaataatcaaaactatcgacaataagtctagcattcataccaatatatcgaccttttatataggcagattgatcttttgatataacattatctaaaaagaattgcaaA-TGTATTG---AAATT--A-----CAGATA-AGCG-TTGTGAATATGT-AAGTGAT----TCTCGTTCAT--AGGAGCA-----AT-CC-A-TGC---A-A-GAATAAAAATGA-CTT-----TT-TAATTCA-TTCCAAAATTTCGTATA-AAATTCTGA--TAGTATTCCATCGA--AACCA--G-GAGATTTG----TTTTCTTTCATATCATGTAATGCAT--TTGTATATT--CAT--CAAGAGTTGAAACTTGG-----TTTAACATATTTTT--GTCATCATCG-CTTA-AAACGTTTTCAAAAATTG--TATTTTGTAAA---------TAT--TCATTT-AATTCACT--GT---TTTC-TTCTTGATTTG-------------TATAT-AATT-TTTCATAATAGA--CACACA----TGGTTT-------TT-AAAATATCTTCG------TCTT---TATGT--------A-CAAGTTTATTTTTCT-CATTTAGTAATTGCTTAATCGTATTT-----TTGTATTGACAACTC----TTTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTATAG
gi|5 : tatatgatacTCTTC--GCCAA-AGT-AAAAGCAATGCT-TTTAT-AG-TCTGTGTTTG-TAAGACTCATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATC--TCC-CTTTTTA-TGTATCA---AAGAT--AAA--ACAGCCA-ATCT-TTGTGTAAAAGTTAAAC-AT----TCT---TCAT--AAAAAAAATT--AT-CA-A-CAG---A-ATCAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GGGCAGACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--AATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TACGNNNNN-NNNNNNN-NNNN-NNNNNNNNNACGACTATATAATTCTG--GTAAAACGCATACATGT-TA-TCACGTATATCATCATTATCTTGACAA-AA-CAGAATTATTTT--
gi|7 : TTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATC--TCC-ATTTTTG-TGTATCA---AAGAT--AAA--ACAGCCA-ATCT-TTGTGTAAATGTTAAAC-AT----TCT---TCAT--AAAAAGATTT--AT-CA-A-CAG---AAG-CAA-AAAAGTTA-TGT-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGCCTA--ACCCA--G-GACTCTTAATTATTACTCTTCATGTTGAATAAAGCACAACGATATTCTTCCAT--TGTGAGTGGAGA----A-----TTTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CT-------------------------ACTGTAT-AATT-TCTGTCAAAACG--CATACA---------------------------A-TCA------TCAT---TAT-TTGACAA-AA-CAGAATTATTca
gi|9 : --GCGAA-AAT-ATGTGCAA--AT-TTTGT-AA------ATTTG-TCAGACTAATAGG--CCTATTAA-TTT-CGGAGA--ATCATCTTTTTC--ACCATTTTTTA-TGTATCA---GAGAA--ATA--ACTGAAA-GTTT-TTGAGAAAAAGTC--AT-TT----TCT---TGTT--TGAAATGTTGAAAT-TA-G-TGA---T-T-CAT-AGAA--TATTTT-----TT-TAATCTCATTCCAGAATACTTTATA-GATTTCA-ATTGGGTATACCACCAG--ACCCAGCG-GA--TTTG----TTGTTTTCTATGT
blockSeqs : TT G T TT C C C C C A GC T C GCCA TAAGT CGC C C ATT TG AATT A T C T A T C C G CTCC CTT TA TT T AA G C GGCTTGGT T G TTT AGAAA T G CA G TT A TC AG GC C CT ATTA A G T TT ACTTGG TT AA T T AC TATTTATTC CT A C A A GTT C A TTG TACGNNNNN C C AC ATTCTGGTAAAACGCATA A A T CGTATA CAT C A T T TCT . A G . C C ATGCGGAG A A T A G A AA G T A T T T A A T G
blockSeqs : . . . AT . . . . A T . . . TTT ATCA C A . . . AT C . . A A A T G G . CGT . AC A C . . CAGAATC . A TG . T A C . . C GA . . . CT . A G T . CTTGG . G T T . . . . . . A . . A TTG CTACCG . . . TGGTTTTT C A . . . G A . . TG . A . . . . . . . A . .
blockSeqs : . . . AA . . . . A T . . . TTA TTT C . . . . TT A . . T T T T G . . . . GC T C . . CAGAATC . A TT . . A A . . T TT . . . GA . A G T . A . G A C . . . . . . A . . T . TAGA . . . TGTTAT A A . . . C A . .
blockSeqs : . . . TG . . . . C T . . . TTA TGC A . . . . CA A . . A T T T A . . . . GC A . . . CAGAAGC . G CT . . G A . . T TT . . . GA . . A . . A . A T A . . . . . . A . . T . TA . . . AGTTAT T . . . . . . . .
blockSeqs : . . . AA . . . . A T . . . ATG AGG T . . . . AA C . . A A A T A . . . . AA T . . . TGCAAG . G TG . . G C . . C GA . . . CT . . . . . A . A T T . . . . . . . . . A . . . . . . . . . . .
blockSeqs : . . . TG . . . . C G . . . CCA TGC T . . . . AA C . . T A T C A . . . . AG T . . . TGATTC . . TG . . A C . . G GA . . . CT . . T . . . . . . . . . . . . . .
blockSeqs : . . . TG . . . . T G . . . CCA AGG A . . . . TA A . . T A A . . . . . . AT . . . . GA . . G . . . . . . T TA . . . . .
blockSeqs : . . . . . . . . A A . . . CGG AGG . . . . . . . A . . .
blockSeqs : . . .
blockSeqCons : CGGAATC***** TAC********
originalCons : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANATTT--AT-CA-A-CGG---A-G-CAA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTG-TA------G-ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
finalCons : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANATTT--AT-CA-ACGGAATC-----AA-AAAAGTTA-TGT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTCTTA----TTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGA-AATTT-CTGAGT---CTTC-TAC---ATTTGTAC--------ACTATAT-AATT-TCTGGTAAAACG--CATACA----TG--TT-------AT-CAAGTATA-TCA------TCAT---TATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTTTCCCAATAACACTGACCATTATATATGCTGACTGTTCATTCAATTAAGCCATCAATAATTTTATTTAACCTTTGGGCAAAATAAAAGCTACCATTTTGTAATAGTCAGATTGGTTATAACTAAGTGTGGTAGCTTTTTTCAGATATTAGGTCACCTTTTAAACAATAAAGCTGCTTACTGATATCTTTGCAAAACTCATTTTTCTTATTATGATAATTCAGTGTAAAGCAATCAATCTTCACTTGATAATATTCCAACAATTATTTAAAAAATTCCAGGTACATCATTAAGTAACCGGAAGTAGTATAACAATTTTTCATTACAAACACTAAGGCATCTTTTGAATCCAATTAGTATAGTCGTAGGTTTCATCACAAAACTCTTTTGACAATTTTTAATTGGTATCTTTATTAGACAGAATCATACTTATTTCATTCTGAATAAATTTTGAATCTGTA
Unaligned ( gi|8 ): ATTTTCACCAAAAAAAACCTACCCTTTATATAATGCTGACTGTTCTTTCCAATTAACCATCAATAATTTTTTTGTAACCTCTGGCAAAAATAAAAGCTACAATTTGTAATCAGTAAATGGTTAAACTAAGTGGTCCGATAGTTTTTCAGATATCTACGTCACCCTTTTAAACAATATATAGTGATTACCTGATATTCTTTGCGAAAAACTCAGTTTCTCTTTAATTGAAATATCACGTAAAGGCATTGCAACAACATCTCGCTTATATAAGTCCCAAATAACATTTATACAAATTCACTCCTGGTAATCCGTCAAATCCAGGAGATTTATTATTTTTCATTGCAAACACAGCTTTTTTGCATTTCTAGATGATAGTTAGCGCCGTTTCATCAACATAACTCTTCTTGACATTATTTAATTTTGGTAATCTTCTAACT
Unaligned ( gi|10 ): TGGTACCCTTTTCAAATGATAAAGTGATCAGCAATATTCTTTGCGAAAAACGTATCTTTTATTGAAATATCACTAATACCGTTGTAAACATTCCACTCATATAGTCCCAAAACATCTATGAAATTCACCAGGTAATCCATCAAGTACAGGAGATTGATTATTTTTCATTACAATCGCGGAAATTTTGCATTCTAATGTAGTCAATATTGCATCGCATTTAACTCTTCCACAATCATTCAATTTTGGAACCTCTAACATAGACAGATAATCGTCTATTTCATTAGAATTGCATGTAATTGATTTTGAACTGCATAAAC
Unaligned ( gi|11 ): CTATTGGTACCCCCTTTCAAATGATAAAGTGATCAGCCAATATTCTTTGCGAAAACGTATCTTTTTATGAAATTATCACCTAAATGACCGTTGTATAACATTCCACTCATATAGTCAAAACATCCTATGAAAATTCACCAGGTAATCCTCAAGTAAGGAGATTGAATTATTTTCATTACATCGCGGAAATTTTTGGCATTCTAATGTAGTATATTCGCATCGCATTTAATCTTCACAACATCTCATTTTGGAAACCTCTAACATCGACAGATTAATCGTCAATTCATTAGAATCTGCATG
Unaligned ( gi|14 ): ATTCATTCCAATATATTGACCTTTCATGTTGGCAGACTGATCTTTTGATATAACATTATCCAATATTTTATGCAATCTTCTTGCTAATACAAAAATCTCTTTAAATGAGGCTGAGTGGGCCATACTTATTCTGTTGCCTTTATTGACAGATAAACATTGTGAACATGTAAGTAACTATTTTTCATATGA
Unaligned ( gi|17 ): AAAATATCGACAATAGGTCTAGCATTCATACCAATATATCGACCTTTTATATAGGCAGATTGATCTTTTGATATAACATTATCTAAAAAAAATTTGTAATCTTCTTGCTAGCTAATACAAAAGATAAAATCTTATAATCTGTATT
Unaligned ( gi|20 ): GAGTCTCGCAGTTCATACCCAATATAACGTCCTTCTATATATGGCAGGTTTTGATTTCTCATTAATTATCCATGACTAAAAATACTGGCAAT
Alignments
lowQualScore : 1 1111 1 1111 111 11 1 222 1111111111 1111111 2222222222 222222222 111 222 444444444 4444444444444444444444444444444444 222222222 1 1111 22222 2222 33333333 1 1 11 1 1 1 11 1
lowQualScore : 55 4 4 77 4 4 4 4 1 1 66 4 4 5555 666666 777 0 4 777 66 0000 5 4 4 1 2 2 5 3 0 0000 777 66 22 5 66 0 5 111 55 0 8888888888 5 2 77 5 0 66 1 11 66 66 5 1111111 0 7 1 3 99 8888888888 99 66 5 5 77 222222222 77 5 1 5 4 000 0 5 1 000 222222222 5 5 0000000000000000000000000000000000 6 666666666 5 0 1 8 8 0 8888 66666 1 1 3333 2 1 44444444 5 1 2 1 1 3 99 3 7 3 7 7 7 3 44 3 6
lowQualScore : .. . . .. . . . . . . .. . . .... ...... ... . . ... .. .... . . . . . . . . . .... ... .. .. . .. . . ... .. . .......... . . .. . . .. . .. .. .. . ....... . . . . .. .......... .. .. . . .. ......... .. . . . . ... . . . ... ......... . . .................................. . ......... . . . . . . .... ..... . . .... . . ........ . . . . . . .. . . . . . . . .. . .
lowQualScore : 55 0 0 00 4 4 4 4 0 0 11 4 4 9999 888888 999 0 4 888 11 4444 3 4 4 0 2 6 2 9 0 6666 555 99 00 0 99 0 0 111 99 5 8888888888 0 2 55 0 2 99 0 55 99 99 0 6666666 7 3 0 5 22 7777777777 22 44 0 4 99 999999999 99 7 9 7 3 000 1 7 9 000 666666666 7 7 2222222222222222222222222222222222 7 777777777 0 8 0 0 0 8 1111 00000 0 0 5555 5 0 55555555 5 0 5 0 0 3 33 3 3 3 3 3 3 3 77 3 7
consensus : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANA-TTT--AT-CA-AC-GGAATCAAAAAAGTTA-TG-T-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTC----TTATTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGAAATTT-CTGAGT---CTTC-TAC---ATTTG-TA----A-CTATAT-AATT-TCTGGTAAAACGCATAC----ATG--TTA-TCAAGTA--------------TA-TCA---------TCATTATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
Reference ( family-2639 ) : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTNATNGG--TCTGT-AG-TTA-CCGAGG--AGN-TCTTTATC--NCC-TTTTTTA-TGTATCA---AAGAT--AAA--ACAGNCA-ATCT-TTGTGNAAANGTTAAAC-AT----TCT---TCAT--AGAAANA-TTT--AT-CA-AC-GGAATCAAAAAAGTTA-TG-T-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGNANACCGTCTA--ACCCA--G-GACTC----TTATTACTCTTCATGTCGAATAAAGCACAACGGCATTCTTCCAT--CGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCG-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGAAATTT-CTGAGT---CTTC-TAC---ATTTG-TA-C--A-CTATAT-AATT-TCTGGTAAAACGCATAC----ATG--TTA-TCAAGTA--------------TA-TCA---------TCATTATCTTGACAA-AA-CAGAATTATTTT--T-CATTCTTTAATTGCTTAATCGTATTTGAAGCTTGTNTTNGCGACTCCAGTCTTCCGAAACNCAAAGAATATGCGGAGATTTTCCACCNCGTTCNGTCCAGTTCGCCCTTGATCTTATCTGAGCNCCTTTAGACTTATTATCGATCAGTAA-TGCAAGTTCAGGATTCT-AAATTTCGTTTT-AAATTCATATCAATGTTTCTAGAGTCTTTTCCTTCCATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTAGTTTTACTTAATTTGGGTGAATAATCAA
gi|1 : TCTTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAAG--AGT-TCTTTAAC--GCC-CTTTTTA-TGTATAA---AAGAT--AAA--ACAGTCC-CTCT-TTGTGTAAAGGTTAAAC-AT----TCT---TCAT--ACAACGA-TTT--AT-CA-ACCGGAG--AAAAAAGTTA-TA-T-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGTCTA--ACCCA--G-GACTC----TTATTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----T-----TCTAAGAAAATTTT--ATCATCACCA-GATATAA-TTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGAAATTT-CTGAAT---CTTC-TAC---ATTTG-TAGA--A-CTATAT-AATT-TCTGGTAAAACGCATAC----GTG--CTA-TCAAGTA--------------TA-TCA---------TTATTAT-TTGTCAA-AA-CAGAATTA-TTT--T-CATTCTTTAATTGTTTAATTGTATTTGAAGCTTGTCTTTGTGACTCCAGTCTTTAAAAATACAAAGAAT-T------ATTTTCC-CCTCGTTCTGTCCAGTTCGCCCTTGATCTTATCTGAGCTCCTTTAGACTTATTATCGATCAGTAC-TGCAAGTTC-GGATTCT-AAATTTTGTTTT-AAATTCATATCAATATCTATAAAGTCTTTTCCTTCTATTTTTGATATCCTGTTTTCT-AAATCAGAAATAAGATG-TTTGGTGGTTTTATTCAATTTGGGTGAATAATCAA
gi|12 : CTTA--GCCAAGAGT-AGTTGCAATTATCTTTAT-AA-TCAGTGTTTG-TTAAACTCAAAGG--TCTGT-AA-TTT-TTTAAGTAAGT-TTCGTGTCCGCCT-TTTTTTA-TG-AACAATTAACGT--AAT--ACTGACA-ATTTCTTGAGTA-----CAGCC-ATCTCCCCT---TGCT--CGAATTA-TTTC-CT-TA-A--GGCTTGGTAAAAGATA--G-TAGAAATT-GA-TTT----CCAAAA-GCATTATAGAAACTCAGA--TGGAATCCCATCCAAGACCTG--GCGACTT----TGATTACTTTTCAT
gi|13 : TTC--GCTAA-AAC-ATGAGCAAATAT-TTTGT-AG-TCAATGTTTG-TAAGACTAATTGG--CCTAT-AA-TTT-TTAAGA--TTT-TCCTTATC--CCC-TTTTTTA-TATATCA---AAGAT--ATT--ACTG-CATTTCT-TTGTGAAAATGGTAt
gi|15 : ttgcgttctccccaatatatctacccctaatatatgcattttgttcataactaatcattctattagcaaccttttgtagacgaTCTT---GCTAA-TAC-AAAAGCTAAAAT-TTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--CCTAT-AA-TTA-TTAAGA--TGC-TCTgtatacctttatcaat
gi|16 : accaatatatcgccctcttatataggcagactgatattttgatataacattatctaaaatttgtttgtaatgtCTTTAGACTTATTATCAATCAGTAA-TGCAAGTTCA-GATTCT-AAATTTCGTTTTAAAATTTATATCAATGTTTCTAGAGTCTTT--CTTCCATTTTTGATATCCTGTTTTCTAAAATCAGAAACA--ATGTTTTGGTAGTTTTACTTAATTTGccccgcttt
gi|18 : ttCAGTAAATGCAAGTTCAAGATTCTGAAATTTCG-TTT-AATTTCATATCAATGTTTCTAGAG--TTTTCTTCCCA-TTTTGATATCCTGTTTTCT-AAATCAGAAAT-AGATG-GTTGGTAGTGTTACTTAATTT-GATGAATAATCAA
gi|19 : -GATATA-TTTTTTTCTAAATCTA--TATTTGATTAA---------AAA--TC-TGTAATTT-CTGAGT---CTCC-TAC---ATTTG-TA-G--AACAATAT-AATT-TCTGGTAAAATGCATAC----ATG--TTA-TCAAGTA--------------TA-TCA---------TCATTAt
gi|2 : aTCTTC--GCCAA-AGTTAAAAGCAATGCT-TTTATCAGCTCTGTGTTTGCTAAGACTCATTGGGCTCTGT-AGCTTAGCCAAGG--AGG-TCTGTATC--CCCCTTTTTTACTGTATCA---AAGAT--ACA--ACAGCCA-ATCT-TTGTGTAAAAGTTAA-C-AT----TCT---TCATTAAAAAACA-ATT--AT-CACAC-AGAATCAAAAAAGTTA-TG-T-----TTTGAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GG-CAGACCGTCTA--ACC-A--G-GACTC----TTATTACTCTTCATGTTGAATAAAGCACAACG-CATTTCTCCATTTCGTGAGTGGAGA----A-----TCTAAGAAAATTTTTTATCATCATCAAGATATAATTTTTTTCAAAATTTAACCATT-GATAAA---------AAGCTTC-TGAA-TTT-CTGAGTGTTCTTCCTAC---ATTTGCTA-CCGA-CTATATCAATTCTCTGGTAAAACGCATAC----AAG--TTA-TCACGTA--------------TA-TCA---------TCATTATCTTGACAATAATCAGAATTATTTT--TGCATGCTTTA
gi|21 : cttgcatttattcctatatctacctttaatgtaacgctgacctgatcatttggcattaacttatcttattattttttgtagccTCTTC--GCCAA-AGT-AAAAGAAA
gi|3 : attttttgtagccTCTTCTTGCTAA-TAC-AAAAACTAAAAT-CTTAT-AA-TCTGTATTGG-TGAGGCTAATTGG--TCTAT-AA-TTA-ATGAGA--TGC-CTTTTATC--ACC-TTTCTTA-TATA-------ATATTGAAATTACAGATA-AACG-TTGTGAATATGT-AAGTGAT----TCTCTTTCAT--AGGAGCA-TTCC-ATGCA-A--GAAAACAAATG-GTT-----C-----TT-TAACTCA-TTCCAAAATGTCTTATA-AAATGTTGC--TGGTATTCCATCTA--AACCA--G-GAGAT----TTGTTTTCTTTCATATCAAATAATGCAT--TGGTAT--ATTCAT--CAAGAGTTG-GA----ACTTGGTTTGACATATTTTT--GTCATCAACG-CTTA-AAACATTTTCAAAAATTG--TATTTTGTAAATATTTATTCAAT--TC--ACAATTT-CT--GT---TTTC-TTCTTGATTTG----------TATAT-AATT-TTTCATAA
gi|4 : taactttgttattattttcacaataatcaaaactatcgacaataagtctagcattcataccaatatatcgaccttttatataggcagattgatcttttgatataacattatctaaaaagaattgcaaA-TGTATTG---AAATT--A-----CAGATA-AGCG-TTGTGAATATGT-AAGTGAT----TCTCGTTCAT--AGGAGCAATCC--ATGCA-A---GAAT---AAAAATGA-CT-T-----TT-TAATTCA-TTCCAAAATTTCGTATA-AAATTCTGA--TAGTATTCCATCGA--AACCA--G-GAGAT----TTGTTTTCTTTCATATCATGTAATGCAT--TTGTATATT--CAT--CAAGAGTTGAAACTTGG-----TTTAACATATTTTT--GTCATCATCG-CTTA-AAACGTTTTCAAAAATTG--TATTTTGTAAA---------TAT--TCATTTAATTCACT--GT---TTTC-TTCTTGATTTG----------TATAT-AATT-TTTCATAATAGACACAC----ATGGTTTT-TAAAATA--------------TCTTCG---------TCTTTATGT--------A-CAAGTTTATTTTTCT-CATTTAGTAATTGCTTAATCGTATTT-----TTGTATTGACAACTC----TTTCCGAAACCCAAAAAATATGCGGAGATTTTTCACCATTTTCAATCCAGTTTGCTTTTGATCTTATCTGAGCGCCTATAG
gi|5 : tatatgatacTCTTC--GCCAA-AGT-AAAAGCAATGCT-TTTAT-AG-TCTGTGTTTG-TAAGACTCATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATC--TCC-CTTTTTA-TGTATCA---AAGAT--AAA--ACAGCCA-ATCT-TTGTGTAAAAGTTAAAC-AT----TCT---TCAT--AAAAAAA-ATT--AT-CA-AC-AGAATCAAAAAAGTTA-TG-T-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAAA--GGGCAGACCGTCTA--ACCCA--G-GACTC----TTATTACTCTTCATGTTGAATAAAGCACAACGGCATTCTTCCAT--TGTGAGTGGAGA----A-----TCTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--AATTTGATAAA---------AAG--TC-TGAAATTT-CTGAGT---CTTC-TAC---ATTTG-TA-C--G-NNNNNN-NNNN-NNNNNNNNNNNNNNNACGACTATA--TAATTCTGGTAAAACGCATACATGTTA-TCACGTATATCATCATTATCTTGACAA-AA-CAGAATTATTTT--
gi|7 : TTC--GCCAA-AGT-AAAAGCAATGAT-TTTAT-AG-TCTGTGTTTG-TAAGACTTATGGG--TCTGT-AG-TTA-CCAAGG--AGG-TCTTTATC--TCC-ATTTTTG-TGTATCA---AAGAT--AAA--ACAGCCA-ATCT-TTGTGTAAATGTTAAAC-AT----TCT---TCAT--AAAAAGA-TTT--AT-CA-AC-AGAAGCAAAAAAGTTA-TGTT-----TT-GAGTTTC-TCCCAAAATGCCTTATA-AAACTCAGA--GGGGAGACCGCCTA--ACCCA--G-GACTCTTAATTATTACTCTTCATGTTGAATAAAGCACAACGATATTCTTCCAT--TGTGAGTGGAGA----A-----TTTAAGAAAATTTT--ATCATCATCA-GATATAATTTTTTTCAAAATTTA--TATTTGATAAA---------AAG--TC-TGAAATTT-CTGAGT---CT---------------------A-CTGTAT-AATT-TCTGTCAAAACGCATAC----A------------------------------A-TCA---------TCATTAT-TTGACAA-AA-CAGAATTATTca
gi|9 : --GCGAA-AAT-ATGTGCAA--AT-TTTGT-AA------ATTTG-TCAGACTAATAGG--CCTATTAA-TTT-CGGAGA--ATCATCTTTTTC--ACCATTTTTTA-TGTATCA---GAGAA--ATA--ACTGAAA-GTTT-TTGAGAAAAAGTC--AT-TT----TCT---TGTT--TGAAATG-TTGAAAT-TA-GT--GATTCATAGAA--TATTT-T-----TT-TAATCTCATTCCAGAATACTTTATA-GATTTCA-ATTGGGTATACCACCAG--ACCCAGCG-GA--T----TTGTTGTTTTCTATGT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATTTTCCCAATAACACTGACCATTATATATGCTGACTGTTCATTCAATTAAGCCATCAATAATTTTATTTAACCTTTGGGCAAAATAAAAGCTACCATTTTGTAATAGTCAGATTGGTTATAACTAAGTGTGGTAGCTTTTTTCAGATATTAGGTCACCTTTTAAACAATAAAGCTGCTTACTGATATCTTTGCAAAACTCATTTTTCTTATTATGATAATTCAGTGTAAAGCAATCAATCTTCACTTGATAATATTCCAACAATTATTTAAAAAATTCCAGGTACATCATTAAGTAACCGGAAGTAGTATAACAATTTTTCATTACAAACACTAAGGCATCTTTTGAATCCAATTAGTATAGTCGTAGGTTTCATCACAAAACTCTTTTGACAATTTTTAATTGGTATCTTTATTAGACAGAATCATACTTATTTCATTCTGAATAAATTTTGAATCTGTA
Unaligned ( gi|8 ): ATTTTCACCAAAAAAAACCTACCCTTTATATAATGCTGACTGTTCTTTCCAATTAACCATCAATAATTTTTTTGTAACCTCTGGCAAAAATAAAAGCTACAATTTGTAATCAGTAAATGGTTAAACTAAGTGGTCCGATAGTTTTTCAGATATCTACGTCACCCTTTTAAACAATATATAGTGATTACCTGATATTCTTTGCGAAAAACTCAGTTTCTCTTTAATTGAAATATCACGTAAAGGCATTGCAACAACATCTCGCTTATATAAGTCCCAAATAACATTTATACAAATTCACTCCTGGTAATCCGTCAAATCCAGGAGATTTATTATTTTTCATTGCAAACACAGCTTTTTTGCATTTCTAGATGATAGTTAGCGCCGTTTCATCAACATAACTCTTCTTGACATTATTTAATTTTGGTAATCTTCTAACT
Unaligned ( gi|10 ): TGGTACCCTTTTCAAATGATAAAGTGATCAGCAATATTCTTTGCGAAAAACGTATCTTTTATTGAAATATCACTAATACCGTTGTAAACATTCCACTCATATAGTCCCAAAACATCTATGAAATTCACCAGGTAATCCATCAAGTACAGGAGATTGATTATTTTTCATTACAATCGCGGAAATTTTGCATTCTAATGTAGTCAATATTGCATCGCATTTAACTCTTCCACAATCATTCAATTTTGGAACCTCTAACATAGACAGATAATCGTCTATTTCATTAGAATTGCATGTAATTGATTTTGAACTGCATAAAC
Unaligned ( gi|11 ): CTATTGGTACCCCCTTTCAAATGATAAAGTGATCAGCCAATATTCTTTGCGAAAACGTATCTTTTTATGAAATTATCACCTAAATGACCGTTGTATAACATTCCACTCATATAGTCAAAACATCCTATGAAAATTCACCAGGTAATCCTCAAGTAAGGAGATTGAATTATTTTCATTACATCGCGGAAATTTTTGGCATTCTAATGTAGTATATTCGCATCGCATTTAATCTTCACAACATCTCATTTTGGAAACCTCTAACATCGACAGATTAATCGTCAATTCATTAGAATCTGCATG
Unaligned ( gi|14 ): ATTCATTCCAATATATTGACCTTTCATGTTGGCAGACTGATCTTTTGATATAACATTATCCAATATTTTATGCAATCTTCTTGCTAATACAAAAATCTCTTTAAATGAGGCTGAGTGGGCCATACTTATTCTGTTGCCTTTATTGACAGATAAACATTGTGAACATGTAAGTAACTATTTTTCATATGA
Unaligned ( gi|17 ): AAAATATCGACAATAGGTCTAGCATTCATACCAATATATCGACCTTTTATATAGGCAGATTGATCTTTTGATATAACATTATCTAAAAAAAATTTGTAATCTTCTTGCTAGCTAATACAAAAGATAAAATCTTATAATCTGTATT
Unaligned ( gi|20 ): GAGTCTCGCAGTTCATACCCAATATAACGTCCTTCTATATATGGCAGGTTTTGATTTCTCATTAATTATCCATGACTAAAAATACTGGCAAT