lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 222 1111 33333333333 11 666666666666666 1 1 1 2222 11 1111 22222222222222222222222222222222222222222222222222222222222222222 222 1 111 11 1 1 2222 1 11 111111111 1 111111111111 5555555555555555555555
lowQualScore : 8 333333 444 1111 8 88 44444444444 3 33 66 444444444444444 1 8 0 6 0 1111 33 9999 0 3 6 2 11111111111111111111111111111111111111111111111111111111111111111 1 8 8 111 2 99 6 444 11 0 0 2222 0 33 55 999999999 3 3 6 0 3 3 6666 66 33 2 2 2 444 2 2 444444444444 2 3 3 66 2222222222222222222222 99
lowQualScore : . ...... ... .... . .. ........... . .. .. ............... . . . . . .... .. .... . . . . ................................................................. . . . ... . .. . ... .. . . .... . .. .. ......... . . . . . . .... .. .. . . . ... . . ............ . . . .. ...................... ..
lowQualScore : 0 000000 222 8888 0 66 88888888888 5 88 00 444444444444444 6 0 0 0 0 2222 88 5555 2 2 5 5 44444444444444444444444444444444444444444444444444444444444444444 8 0 2 000 8 00 4 000 00 0 0 2222 0 88 88 222222222 3 2 7 7 6 6 1111 33 77 7 7 7 777 7 9 666666666666 9 3 3 99 1111111111111111111111 77
consensus : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTCGC--AACGCAG--AT-CGTA-GTTNATCNCGAA--ACTTTCTANACGGC--GAGAAG--------CG-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACATATATTCGACAT-----------CTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTGAAAT-TCTCGCCGCTG--CCTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATNC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTNT----GGC--GAGT--T-AT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
Reference ( gi|7 ) : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTCGG--AACGCAG--AT-CGTA-GTTAATCTCGAA--ACTTTCTAAACGGC--GAGAAG--------CGTCGATATGTGATGAC-ACATC-GCCAATACGCA-CAC----GACA--CTGGA--CGACATATATTCGACAT-----------CTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTG--GCTGGCAAGTACTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCT--ACA-G--ACATGTGTTCAAGTCC----TATA-CGA-CAAC-TGAAG-AGTTGT----GGC--GAGT--T-AT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-TTGTGAC
gi|3 : ATGTTGAGCAGATATCATATTAAATGTCTTTCGA------ACTCGC--AACACAG--AT-TGTA-GTTTATCGCGAT--ACTTTCTATATGGT--GA------------------CATGTGATGAC-ACATC-GCCGATACGTA-CACATTAGACAACTTGTATTCAACATGTCTTTGACAT-----------CTACATGTATATGAGAA-------------CAA-----AAC--TCGCACGACAAGTTTAAAAT-TTTCGCCACTG--CCTGGTGAGTATTGGCAACATGAAGAGACGTCATTTCT--TCG-AC-ATGCAGACG-G--ACATGTGTTCAGGATA----TACA-CGA-C-AC-TG-----GTTATATAGAGA--GAGA--T-AT-ATAA---TA-A---A------------AA-ACTCC-GT--G---------GTA----------CCAACTCATGACA-TTGTGA
gi|4 : tacttatcaaaatatatatgcagattatcatcgtcaaaattagtaacaatgttgaggaaatgtggaactgaatacgtaaacacccgtatgaatgtcgagcaggagtcttgggaacttgtacgtgtgtcgagtgcATGTTGAGCAGATATCGTATTAA-TGTATTTCGA------ACTCGC--AACGCAG--AT-CGTC-GTTTATCGAGAA--ACTTT
gi|11 : tcgacatttatacgagttcttgacgagaaatatacgaatgtagccgatccactgcgacttggatataccgatatttgaatagttcacgctcgcattatttgcctattgcatcttttctctattctctcattcagacgttgtgttgttgaataggttgtacatgtaacagtgatacaatgtcttgttctgcggtaacttatgcctttctatgtgcatgacggtgttagtcggtgtctagagaacaattatacttatcaacaaatttatgcacattacttttatgcaatcatcatcgtcaaaattcgtaacaatgtcgggaaaatgtcgaattgaacacgtaaacactcgtatgaatgtcgagcaggagtcttggaaactcgttgtatgtcgagtgcATGTCGAACAAATATGGTATTAA-CGTCTTTCAA------ACTCGC--AACGCAG--AT-CGTA-GTT
gi|10 : gtacttatcaaaaaatatactcacactgcaattatcattgtccaaattcgtaagaatgtcgaggaaatgtcgaactgaaggcgtaaacactcgaatgaATATTGAGCAGGTATCGCATCAA-TATCTTCAGA------ACTGGC--AATGC-------------TTA---TCG------TGTCTACACGGC--GAGAAGCAGCAACTCGTCGATACGT----AC-ACA
gi|2 : gtagcaatgttgaggaaatgttgaaaacgaataaaagcgtatgaatgttaaacaggtatctttggaactcatggcatgtcgggagcAA-TGTCTTGCGACAAAACACTCGAGCAACGCATTTATACGTAAGTTA---TCGAAGAACTTTCTAAACGGC--GAGTAG--------CGGCGACATGTGACGACTACATCTGTCGATACGCAGCAC----GACA--CTGGA--CGACA-ATATTCGACATGTCTTCGACATCTA------TACGAGACAAAACTCGCACGACAATTTTAAAC--C----------GTCTAAGAT-TCTCGCCG-TGGCGCTGGCGA-TCTTGGC-ACATGAAGAGA---CAGTTCTTATCGAACAATCC--ACA-GGAAC-TGTGTTCAAGTCC------TA-CGATCAAC-TGAAG-G--TGT----GGC--GAGTAGT-AG-A-AC---TCGGC-CA------------AAGACT-CTATTAG---------GTA----------CTAACTTGTGACA-GTG
gi|12 : tatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaTCTAAATGGCTGGAGAAG---------------AAGCGA---C-ACATT-GCTGAAACGCA-CAC----GAGA--TTG-------CATACATT--A-AT-----------TTA-------AC-ATAC-------------T--TTTTAACCG-C----------GTTTGAAAT-TCTCGTCGTTG--CCTGACGAGTTTTGGCGAAATGAAGAGA---CGTTTCT--TC
gi|20 : GACATGTGACGAC-ACATC-GCCGATACGCA-CAT----GACA--CTTGA--CGACATATATttcgccaagac
gi|15 : CGACAG-----------CCA------TACGAGA-------------------TTGGACATC----------AATTCAAATGTCT------------TGGT--GTTTTGGCGACATGTAGAGA---CATTTCT--TTG-AC-ATGC--ACATG--A-ATGTA--CGGATCT----TA--------------AAG-AGTTGT----GGC--AAGT--T-AT-A-AC---TC-
gi|9 : cgacacaacgcAC-------------CAATT---AAC--C----------GTTTGAAAT-TCTCGCCGCTG--CCTGGCGAGTACTGGCAGCATGAAGAGG---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCCTACGTACA-CGA-CAAC-TGAAG-AGTTGC----GGC--GAGT--T-AT-A-AC---TC-CT-CA------------AA-ACT-C-GT--GGTACATAT-GTA----------CCAACTCGTGACA-GTGTGA
gi|17 : gagaccaaaactgcGTGTTCAAGTCC----TACAACGA-CACC-T-AAG-GGTTGT----GGCC-GAGT--T-AT-A-AT---CT-GC-CA------------AA-CTT-C-GT--G---------GTA----------TCGATTTGTGACT-T
gi|19 : aaTTCAAGTCC----TACA-CGAACAACATGAAGGAGTTGT----GGC---AGT--T-ATTA-AC---TC-GC-CA------------AA-A---C-GT--GACT------GTA----------CC
gi|5 : GAGG-AGCTGA----GGGAAGGGT--T-AA-A-AC---TC-GC-CA------------AA-AAT-C-
gi|9 : aagcccggtcacaactgtcacgagttggaacaggtgaggatacgagtttaccacG-AGTTTT----GAG--GAGT--T-AT-A-AC---TC-GC-CG------------CA-ACT-C-caacgagtttacactgcttttgcatgatgggagacgaaccagtagtaggatttctgcatcgagttctgctgtcccacactgacacgagaatagtagcgaagtttctttttaaatcgagtttaaggctgtcctctgggatttgatgtgtaccgacacgttctccagcatggaaatttttctacgagaatgtacgaactcaagcgagtctagtcggacatttacacgattcttgggacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgca
gi|6 : gagaccaaaactgcaccaattaaccgtttgaaattctcgccgctgcctggcgagtactggcagcatgaagaggcatttcttcgacatccacagacatgtgttcaagtcctacgtacacgacaactgaaG-AGTGCT----GGG--GAGT--T-AA-A-AC---TC-GC-CA------------AA-Agtggtacatatgtaccaactcgtgacagtgtga
gi|8 : agccccggtcacactgtcacgatttggaactacgagttaccacG-AGTTCT----GGG--GAGT--T-GT-A-TT---TC-GC-CA------------AA-Aattccacgagtttatgatgctttttgatgatggagacagcagtacgatttctgctcaggttctcttccacactgacacgagattaggacgacagtttcttttttaacacgagtttaaggcgtcctctgtacatgtgtgtacgacactttctccacaatggaagagttttctacgaggaatgtacgaactctagcgagtctaatcgacatttacacggagttcttgacgaggtatgacgaatgtttgcgagaaatgtacgaatgtagccgatctactgcgacttggatatacctatattttgaatattcacgctcgcattatttgttctattg
gi|5 : cctggtcacattatgatttggaactacatatatacgagttatcacG-ATTTTT----GGC--GAGT--T-TT-A-ACCCTTC-CCTCAGCTCCTCGTGGTAA-ACT-C-GT--ATCCTCACCTGTT----------CCAACTCGTGACAGTTGTGACaaaatcacgagtttccaatgattttggtgcaggggagatcagttcgacttctgtttgagttcttttccacactgacatgagagcgggacaacagttgcttttgaactcaaacttagggcgtcctctatacgatgtgtgcacaacattttccctagaatggaagatttttctcgagaatgtacaagatctggcaagaatgacatata
gi|19 : aagcccgGTTTT----GGC--GAGT--TAAT-A-AC---T--GC-CA------------CA-ACT-C-caacgagtttacactgcttttgcatgatgggagacgaaccagtagtaggatttctgcatcgagttctgctgtcccacactgacacgagaatagtagcgaagtttctttttaaatcgagtttaaggctgtcctctgggatttgatgtgtaccgacacgttctccagcatggaaatttttctacgagaatgtacgaactcaagcgagtctagtcggacatttacacgattcttgggacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgca
gi|6 : ttcaagtcctacacgaacaacatgaagTTTT----GGC--GAGT--T-TT-A-AC---TC-CC-CA------------GC-ACT-C-GT--G---------GTAACTCGTAGTTCCAAATCGTGACA-GTGTGACgtgactgtacc
gi|8 : agccccgTTTT----GGC--GAAA--T-AC-A-AC---TC-CC-CA------------GA-ACT-C-GT--G---------AT-------------AACTCGTattccacgagtttatgatgctttttgatgatggagacagcagtacgatttctgctcaggttctcttccacactgacacgagattaggacgacagtttcttttttaacacgagtttaaggcgtcctctgtacatgtgtgtacgacactttctccacaatggaagagttttctacgaggaatgtacgaactctagcgagtctaatcgacatttacacggagttcttgacgaggtatgacgaatgtttgcgagaaatgtacgaatgtagccgatctactgcgacttggatatacctatattttgaatattcacgctcgcattatttgttctattg
gi|15 : cctggtcacattatgatttggaactacatatat--GAGT--T-AT-A-AC---TT-GC-CA------------CA-ACT-C-aaaatcacgagtttccaatgattttggtgcaggggagatcagttcgacttctgtttgagttcttttccacactgacatgagagcgggacaacagttgcttttgaactcaaacttagggcgtcctctatacgatgtgtgcacaacattttccctagaatggaagatttttctcgagaatgtacaagatctggcaagaatgacatata
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): GACGATTTATGACGAATGTTTGGCGAGAAATGTACGACAATTGAGCCGACACTGGTGACTGGGGAGTGATGACCGATATTGAAGGATTTCCACGTTCGCATGGAGTGTGCGGGTATTGCACGTTTTCTGCTATTTCTCTCAATCAGACGATGTGTTGTTGAATTAGGCGTGACATGTAAGCAGTTGATACCAACTTGGTTGTTTGTATCTGCGGGTAACTTATTGCTTATTGCCTTTCATATGTGCATGGTTGTGGTTAAGTTGCAGTTGTGTAGGAAACCAATGTATACTTATAAAAAAAAATTGCACATTTTACTTTTATGCATCATCTCTTCAAATGTCATAACAATGTCGCGGAAGAATGTCGAAATTGACACGTAACAGCTGCAGCATTGAAATGTCGAGCAGAGGTCTTGGAGAACTCACATTGTTCCCTACCACAGCTTATCTGTCGTATACTTAAACAATGCAACCATGCACATTAGAAATGTCTTGCGACAAAACACTCGAGCAACGCATTTATACGTAAGTTATCGAAGAACTTT
Unaligned ( gi|13 ): CTACATGTAATATGTGTATGACATTTCGCCTTCTGACACCGTACATGTATATGTGGTATGAACATTTCGCCTTCTGACACCTACATGTATATGTGTATGAACAATTGACAAAACGGCACGCAGTTGAATAATCTTCACAA
Unaligned ( gi|14 ): AATAAACTGAATAAAAAATATCCACCCTACTTTTCTACAATCATCACAGTGAAAATGCATAACCATATCGAGGAAATGTCGAACAGCACACGTACAAAGAACAGGTGTAGCTAGAAAACTCATTACAAGTTGAG
Unaligned ( gi|16 ): ATCACAAAACATCGTGGCAATTTCGAGGATTGTGAAACAGAACACCTAACAAAAGTCTTGGAAACTAGTTGCATGTCAGGTGCATTTGAGCAGATAT
Unaligned ( gi|18 ): TCTCTCATTCAGACGTTGTGTTGTTGAATATATAGGCTGTACATGTAACAGCGATACAATGTCTTGTTCTGCGGTAACTTAT
Alignments
lowQualScore : 111111 11 333333 1111 11 1111 3333333333 2222222 66666666666666666666666666666666666666 111 11 11 1111 1 222222222222 4444444444444444444444
lowQualScore : 6 999999 99 99 6 1 44 44 1 11 1 000000 3 6 6 6 4444 11 1111 5555555555 0 3 3333333 00000000000000000000000000000000000000 2 6 6 2 1 3 111 99 8 8 1 11 8 11 0 2222 3 5 1 1 5 0 5 1 8888 4 55 4 4 777 8888 222222222222 4 4 4 66 3333333333333333333333 77
lowQualScore : . ...... .. .. . . .. .. . .. . ...... . . . . .... .. .... .......... . . ....... ...................................... . . . . . . ... .. . . . .. . .. . .... . . . . . . . . .... . .. . . ... .... ............ . . . .. ...................... ..
lowQualScore : 7 222222 22 22 7 0 22 88 0 00 0 000000 2 7 7 7 2222 00 8888 0000000000 6 2 8888888 22222222222222222222222222222222222222 2 7 7 5 0 7 777 22 0 0 0 00 0 00 8 1111 0 7 4 4 7 7 0 0 5555 0 55 0 0 000 7777 888888888888 4 4 4 11 2222222222222222222222 77
consensus : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTCG--CAACGCAG--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
Reference ( family-2623 ) : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTCG--CAACGCAG--AT-CGTAGTTNATCNCGAAACTTTCTANACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTGAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATNC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTNT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
gi|10 : ATATTGAGCAGGTATCGCATCAA-TATCTTCAGA------ACTGG--CAATGC-------------TTATCGTG------TCTACACGGC--GAGAAGCAG-CAAC--------------TC-GTCGATACGTA-CAC----
gi|11 : gtagcaatgttgaggaaatgttgaaaacgaataaaagcgtatgaatgttaaacaggtatctttggaactcatggcatgtcgggagcATGTCGAACAAATATGGTATTAA-CGTCTTTCAA------ACTCG--CAACGCAG--AT-CGTAGTTa
gi|12 : gtacttatcaaaaaatatactcacactgcaattatcattgtccaaattcgtaagaatgtcgaggaaatgtcgaactgaaggcgtaaacactcgaatgaTCTAAATGGCTGGAGAAG--------AAG---CGAC-ACATT-GCTGAAACGCA-CAC----GAGA--TTG-------CA----------TACATT--A-ATTTA-------AC-ATAC-------------T--TTTTAACCG-C----------GTTTGAAAT-TCTCGTCGTTGC-CTGACGAGTTTTGGCGAAATGAAGAGA---CGTTTCT--TC
gi|15 : CGACAGCCA------TACGAGA-------------------TTGGACATC----------AATTCAAATGTCT-----------TGGTG--TTTTGGCGACATGTAGAGA---CATTTCT--TTG-AC-ATGC--ACATG--A-ATGTA--CGGATCT----TA--------------AAG-AGTTGT----GGC-AAGT--TAT-A-AC---TC-ttcgccaagac
gi|17 : cgacacaacgcGTGTTCAAGTCC----TACAACGA-CACC-T-AAG-GGTTGT----GGCCGAGT--TAT-A-AT---CT-GC-CA------------AA-CTT-C-GT--G---------GTA----------TCGATTTGTGAC
gi|19 : aaTTCAAGTCC----TACA-CGAACAACATGAAGGAGTTGT----GGC--AGT--TATTA-AC---TC-GC-CA------------AA-A---C-GT--GACT------GTA----------CCttt
gi|2 : AA-TGTCTTGCGACAAAACACTCGAGCAACGCATTTATACGTAAGTTATCGAAGAACTTTCTAAACGGC--GAGTAGC-GGCGACATGTGACGACTACATCTGTCGATACGCAGCAC----GACA--CTGGA--CGACAATATTCGACATGTCTTCGACATCTA------TACGAGACAAAACTCGCACGACAATTTTAAAC--C----------GTCTAAGAT-TCTCGCCGTGGCGCTGGCGA-TCTTGGC-ACATGAAGAGA---CAGTTCTTATCGAACAATCC--ACA-GGAAC-TGTGTTCAAGTCC----T--A-CGATCAAC-TGAAG-G--TGT----GGC-GAGTAGTAG-A-AC---TCGGC-CA------------AAGACT-CTATTAG---------GTA----------CTAACTTGTGACA-GTG
gi|20 : tatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaGACATGTGACGAC-ACATC-GCCGATACGCA-CAT----GACA--CTTGA--CGACA----------TATAT
gi|3 : ATGTTGAGCAGATATCATATTAAATGTCTTTCGA------ACTCG--CAACACAG--AT-TGTAGTTTATCGCGATACTTTCTATATGGT--GA-----------CATGTGATGAC-ACATC-GCCGATACGTA-CACATTAGACAACTTGTATTCAACA----------TGTCTTTGACATCTACATGTATATGAGAA-------------CAA-----AAC--TCGCACGACAAGTTTAAAAT-TTTCGCCACTGC-CTGGTGAGTATTGGCAACATGAAGAGACGTCATTTCT--TCG-AC-ATGCAGACG-G--ACATGTGTTCAGGATA----TACA-CGA-C-AC-TG-----GTTATATAGAGA-GAGA--TAT-ATAA---TA-A---A------------AA-ACTCC-GT--G---------GTA----------CCAACTCATGACA-TTGTGA
gi|4 : tacttatcaaaatatatatgcagattatcatcgtcaaaattagtaacaatgttgaggaaatgtggaactgaatacgtaaacacccgtatgaatgtcgagcaggagtcttgggaacttgtacgtgtgtcgagtgcATGTTGAGCAGATATCGTATTAA-TGTATTTCGA------ACTCG--CAACGCAG--AT-CGTCGTTTATCGAGAAACTTT
gi|5 : tcgacatttatacgagttcttgacgagaaatatacgaatgtagccgatccactgcgacttggatataccgatatttgaatagttcacgctcgcattatttgcctattgcatcttttctctattctctcattcagacgttgtgttgttgaataggttgtacatgtaacagtgatacaatgtcttgttctgcggtaacttatgcctttctatgtgcatgacggtgttagtcggtgtctagagaacaattatacttatcaacaaatttatgcacattacttttatgcaatcatcatcgtcaaaattcgtaacaatgtcgggaaaatgtcgaattgaacacgtaaacactcgtatgaatgtcgagcaggagtcttggaaactcgttgtatgtcgagtgcG-ATTTTT----GGC-GAGT--TTT-A-ACCCTTC-CCTCAGCTCCTCGTGGTAA-ACT-C-GT--ATCCTCACCTGTT----------CCAACTCGTGACAGTTGTGAC
gi|6 : aagcccgTTTT----GGC-GAGT--TTT-A-AC---TC-CC-CA------------GC-ACT-C-GT--G---------GTAACTCGTAGTTCCAAATCGTGACA-GTGTGACcaacgagtttacactgcttttgcatgatgggagacgaaccagtagtaggatttctgcatcgagttctgctgtcccacactgacacgagaatagtagcgaagtttctttttaaatcgagtttaaggctgtcctctgggatttgatgtgtaccgacacgttctccagcatggaaatttttctacgagaatgtacgaactcaagcgagtctagtcggacatttacacgattcttgggacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgca
gi|7 : agccccgATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTCG--GAACGCAG--AT-CGTAGTTAATCTCGAAACTTTCTAAACGGC--GAGAAGC-GTCGATATGTGATGAC-ACATC-GCCAATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGG-CTGGCAAGTACTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCT--ACA-G--ACATGTGTTCAAGTCC----TATA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-TTGTGACattccacgagtttatgatgctttttgatgatggagacagcagtacgatttctgctcaggttctcttccacactgacacgagattaggacgacagtttcttttttaacacgagtttaaggcgtcctctgtacatgtgtgtacgacactttctccacaatggaagagttttctacgaggaatgtacgaactctagcgagtctaatcgacatttacacggagttcttgacgaggtatgacgaatgtttgcgagaaatgtacgaatgtagccgatctactgcgacttggatatacctatattttgaatattcacgctcgcattatttgttctattg
gi|8 : TTTT----GGC-GAAA--TAC-A-AC---TC-CC-CA------------GA-ACT-C-GT--G---------AT-------------AACTCGT
gi|9 : cctggtcacattatgatttggaactacatatatAC-------------CAATT---AAC--C----------GTTTGAAAT-TCTCGCCGCTGC-CTGGCGAGTACTGGCAGCATGAAGAGG---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCCTACGTACA-CGA-CAAC-TGAAG-AGTTGC----GGC-GAGT--TAT-A-AC---TC-CT-CA------------AA-ACT-C-GT--GGTACATAT-GTA----------CCAACTCGTGACA-GTGTGAaaaatcacgagtttccaatgattttggtgcaggggagatcagttcgacttctgtttgagttcttttccacactgacatgagagcgggacaacagttgcttttgaactcaaacttagggcgtcctctatacgatgtgtgcacaacattttccctagaatggaagatttttctcgagaatgtacaagatctggcaagaatgacatata
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GACGATTTATGACGAATGTTTGGCGAGAAATGTACGACAATTGAGCCGACACTGGTGACTGGGGAGTGATGACCGATATTGAAGGATTTCCACGTTCGCATGGAGTGTGCGGGTATTGCACGTTTTCTGCTATTTCTCTCAATCAGACGATGTGTTGTTGAATTAGGCGTGACATGTAAGCAGTTGATACCAACTTGGTTGTTTGTATCTGCGGGTAACTTATTGCTTATTGCCTTTCATATGTGCATGGTTGTGGTTAAGTTGCAGTTGTGTAGGAAACCAATGTATACTTATAAAAAAAAATTGCACATTTTACTTTTATGCATCATCTCTTCAAATGTCATAACAATGTCGCGGAAGAATGTCGAAATTGACACGTAACAGCTGCAGCATTGAAATGTCGAGCAGAGGTCTTGGAGAACTCACATTGTTCCCTACCACAGCTTATCTGTCGTATACTTAAACAATGCAACCATGCACATTAGAAATGTCTTGCGACAAAACACTCGAGCAACGCATTTATACGTAAGTTATCGAAGAACTTT
Unaligned ( gi|13 ): CTACATGTAATATGTGTATGACATTTCGCCTTCTGACACCGTACATGTATATGTGGTATGAACATTTCGCCTTCTGACACCTACATGTATATGTGTATGAACAATTGACAAAACGGCACGCAGTTGAATAATCTTCACAA
Unaligned ( gi|14 ): AATAAACTGAATAAAAAATATCCACCCTACTTTTCTACAATCATCACAGTGAAAATGCATAACCATATCGAGGAAATGTCGAACAGCACACGTACAAAGAACAGGTGTAGCTAGAAAACTCATTACAAGTTGAG
Unaligned ( gi|16 ): ATCACAAAACATCGTGGCAATTTCGAGGATTGTGAAACAGAACACCTAACAAAAGTCTTGGAAACTAGTTGCATGTCAGGTGCATTTGAGCAGATAT
Unaligned ( gi|18 ): TCTCTCATTCAGACGTTGTGTTGTTGAATATATAGGCTGTACATGTAACAGCGATACAATGTCTTGTTCTGCGGTAACTTAT
Alignments
lowQualScore : 333333 11111111 11 333333 1111 11 1111 3333333333 2222222 66666666666666666666666666666666666666 111 11 11 1111 1 222222222222 4444444444444444444444
lowQualScore : 5 222222 77 77 66666666 1 5 4 1 11 1 000000 3 6 6 6 4444 11 1111 5555555555 0 3 3333333 00000000000000000000000000000000000000 6 6 2 1 3 111 99 8 8 11 8 11 0 2222 3 5 1 1 5 0 5 8888 4 55 4 4 777 8888 222222222222 4 4 4 66 3333333333333333333333 77
lowQualScore : . ...... .. .. ........ . . . . .. . ...... . . . . .... .. .... .......... . . ....... ...................................... . . . . . ... .. . . .. . .. . .... . . . . . . . .... . .. . . ... .... ............ . . . .. ...................... ..
lowQualScore : 7 999999 99 99 77777777 3 2 2 0 00 0 000000 2 7 7 7 2222 00 8888 0000000000 6 2 8888888 22222222222222222222222222222222222222 7 7 5 0 7 777 22 0 0 00 0 00 8 1111 0 7 4 4 7 7 0 5555 0 55 0 0 000 7777 888888888888 4 4 4 11 2222222222222222222222 77
consensus : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
Reference ( family-2623 ) : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
gi|1 : AA-TGTCTTGCGACAAAACACTCGAG--CAACGCATTT--ATACGTAAGTTATCGAAGAACTTT
gi|10 : gacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgcatggagtgtgcgggtattgcacgttttctgctatttctctcaatcagacgatgtgttgttgaattaggcgtgacatgtaagcagttgataccaacttggttgtttgtatctgcgggtaacttattgcttattgcctttcatatgtgcatggttgtggttaagttgcagttgtgtaggaaaccaatgtatacttataaaaaaaaattgcacattttacttttatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaATATTGAGCAGGTATCGCATCAA-TATCTTCAGA------ACTG--G--CAATGC---------------TTATCGTG------TCTACACGGC--GAGAAGCAG-CAAC--------------TC-GTCGATACGTA-CAC----
gi|11 : gtagcaatgttgaggaaatgttgaaaacgaataaaagcgtatgaatgttaaacaggtatctttggaactcatggcatgtcgggagcATGTCGAACAAATATGGTATTAA-CGTCTTTCAA------ACTC--G--CAACGCA--G--AT-CGTAGTTa
gi|12 : gtacttatcaaaaaatatactcacactgcaattatcattgtccaaattcgtaagaatgtcgaggaaatgtcgaactgaaggcgtaaacactcgaatgaTCTAAATGGCTGGAGAAG--------AAG---CGAC-ACATT-GCTGAAACGCA-CAC----GAGA--TTG-------CA----------TACATT--A-ATTTA-------AC-ATAC-------------T--TTTTAACCG-C----------GTTTGAAAT-TCTCGTCGTTGC-CTGACGAGTTTTGGCGAAATGAAGAGA---CGTTTCT--TC
gi|15 : CGACAGCCA------TACGAGA-------------------TTGGACATC----------AATTCAAATGTCT-----------TGGTG--TTTTGGCGACATGTAGAGA---CATTTCT--TTG-AC-ATGC--ACATG--A-ATGTA--CGGATCT----TA--------------AAG-AGTTGT----GGC-AAGT--TAT-A-AC---TC-ttcgccaagac
gi|17 : cgacacaacgcGTGTTCAAGTCC----TACAACGA-CACC-T-AAG-GGTTGT----GGCCGAGT--TAT-A-AT---CT-GC-CA------------AA-CTT-C-GT--G---------GTA----------TCGATTTGTGAC
gi|19 : aaTTCAAGTCC----TACA-CGAACAACATGAAGGAGTTGT----GGC--AGT--TATTA-AC---TC-GC-CA------------AA-A---C-GT--GACT------GTA----------CCttt
gi|2 : AA-TGTCTTGCGACAAAACACTC--GAGCAACGCA--TTTATACGTAAGTTATCGAAGAACTTTCTAAACGGC--GAGTAGC-GGCGACATGTGACGACTACATCTGTCGATACGCAGCAC----GACA--CTGGA--CGACAATATTCGACATGTCTTCGACATCTA------TACGAGACAAAACTCGCACGACAATTTTAAAC--C----------GTCTAAGAT-TCTCGCCGTGGCGCTGGCGA-TCTTGGC-ACATGAAGAGA---CAGTTCTTATCGAACAATCC--ACA-GGAAC-TGTGTTCAAGTCC----T--A-CGATCAAC-TGAAG-G--TGT----GGC-GAGTAGTAG-A-AC---TCGGC-CA------------AAGACT-CTATTAG---------GTA----------CTAACTTGTGACA-GTG
gi|20 : tatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaGACATGTGACGAC-ACATC-GCCGATACGCA-CAT----GACA--CTTGA--CGACA----------TATAT
gi|3 : ATGTTGAGCAGATATCATATTAAATGTCTTTCGA------ACTC--G--CAACACA--G--AT-TGTAGTTTATCGCGATACTTTCTATATGGT--GA-----------CATGTGATGAC-ACATC-GCCGATACGTA-CACATTAGACAACTTGTATTCAACA----------TGTCTTTGACATCTACATGTATATGAGAA-------------CAA-----AAC--TCGCACGACAAGTTTAAAAT-TTTCGCCACTGC-CTGGTGAGTATTGGCAACATGAAGAGACGTCATTTCT--TCG-AC-ATGCAGACG-G--ACATGTGTTCAGGATA----TACA-CGA-C-AC-TG-----GTTATATAGAGA-GAGA--TAT-ATAA---TA-A---A------------AA-ACTCC-GT--G---------GTA----------CCAACTCATGACA-TTGTGA
gi|4 : tacttatcaaaatatatatgcagattatcatcgtcaaaattagtaacaatgttgaggaaatgtggaactgaatacgtaaacacccgtatgaatgtcgagcaggagtcttgggaacttgtacgtgtgtcgagtgcATGTTGAGCAGATATCGTATTAA-TGTATTTCGA------ACTC--G--CAACGCA--G--AT-CGTCGTTTATCGAGAAACTTT
gi|5 : tcgacatttatacgagttcttgacgagaaatatacgaatgtagccgatccactgcgacttggatataccgatatttgaatagttcacgctcgcattatttgcctattgcatcttttctctattctctcattcagacgttgtgttgttgaataggttgtacatgtaacagtgatacaatgtcttgttctgcggtaacttatgcctttctatgtgcatgacggtgttagtcggtgtctagagaacaattatacttatcaacaaatttatgcacattacttttatgcaatcatcatcgtcaaaattcgtaacaatgtcgggaaaatgtcgaattgaacacgtaaacactcgtatgaatgtcgagcaggagtcttggaaactcgttgtatgtcgagtgcG-ATTTTT----GGC-GAGT--TTT-A-ACCCTTC-CCTCAGCTCCTCGTGGTAA-ACT-C-GT--ATCCTCACCTGTT----------CCAACTCGTGACAGTTGTGAC
gi|6 : aagcccgTTTT----GGC-GAGT--TTT-A-AC---TC-CC-CA------------GC-ACT-C-GT--G---------GTAACTCGTAGTTCCAAATCGTGACA-GTGTGACcaacgagtttacactgcttttgcatgatgggagacgaaccagtagtaggatttctgcatcgagttctgctgtcccacactgacacgagaatagtagcgaagtttctttttaaatcgagtttaaggctgtcctctgggatttgatgtgtaccgacacgttctccagcatggaaatttttctacgagaatgtacgaactcaagcgagtctagtcggacatttacacgattcttgggacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgca
gi|7 : agccccgATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--GAACGCA--G--AT-CGTAGTTAATCTCGAAACTTTCTAAACGGC--GAGAAGC-GTCGATATGTGATGAC-ACATC-GCCAATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGG-CTGGCAAGTACTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCT--ACA-G--ACATGTGTTCAAGTCC----TATA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-TTGTGACattccacgagtttatgatgctttttgatgatggagacagcagtacgatttctgctcaggttctcttccacactgacacgagattaggacgacagtttcttttttaacacgagtttaaggcgtcctctgtacatgtgtgtacgacactttctccacaatggaagagttttctacgaggaatgtacgaactctagcgagtctaatcgacatttacacggagttcttgacgaggtatgacgaatgtttgcgagaaatgtacgaatgtagccgatctactgcgacttggatatacctatattttgaatattcacgctcgcattatttgttctattg
gi|8 : TTTT----GGC-GAAA--TAC-A-AC---TC-CC-CA------------GA-ACT-C-GT--G---------AT-------------AACTCGT
gi|9 : cctggtcacattatgatttggaactacatatatAC-------------CAATT---AAC--C----------GTTTGAAAT-TCTCGCCGCTGC-CTGGCGAGTACTGGCAGCATGAAGAGG---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCCTACGTACA-CGA-CAAC-TGAAG-AGTTGC----GGC-GAGT--TAT-A-AC---TC-CT-CA------------AA-ACT-C-GT--GGTACATAT-GTA----------CCAACTCGTGACA-GTGTGAaaaatcacgagtttccaatgattttggtgcaggggagatcagttcgacttctgtttgagttcttttccacactgacatgagagcgggacaacagttgcttttgaactcaaacttagggcgtcctctatacgatgtgtgcacaacattttccctagaatggaagatttttctcgagaatgtacaagatctggcaagaatgacatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTACATGTAATATGTGTATGACATTTCGCCTTCTGACACCGTACATGTATATGTGGTATGAACATTTCGCCTTCTGACACCTACATGTATATGTGTATGAACAATTGACAAAACGGCACGCAGTTGAATAATCTTCACAA
Unaligned ( gi|14 ): AATAAACTGAATAAAAAATATCCACCCTACTTTTCTACAATCATCACAGTGAAAATGCATAACCATATCGAGGAAATGTCGAACAGCACACGTACAAAGAACAGGTGTAGCTAGAAAACTCATTACAAGTTGAG
Unaligned ( gi|16 ): ATCACAAAACATCGTGGCAATTTCGAGGATTGTGAAACAGAACACCTAACAAAAGTCTTGGAAACTAGTTGCATGTCAGGTGCATTTGAGCAGATAT
Unaligned ( gi|18 ): TCTCTCATTCAGACGTTGTGTTGTTGAATATATAGGCTGTACATGTAACAGCGATACAATGTCTTGTTCTGCGGTAACTTAT
Alignments
lowQualScore : 333333 11111111 11 333333 1111 11 1111 3333333333 2222222 66666666666666666666666666666666666666 111 11 11 1111 1 222222222222 4444444444444444444444
lowQualScore : 5 222222 77 77 66666666 1 5 4 1 11 1 000000 3 6 6 6 4444 11 1111 5555555555 0 3 3333333 00000000000000000000000000000000000000 6 6 2 1 3 111 99 8 8 11 8 11 0 2222 3 5 1 1 5 0 5 8888 4 55 4 4 777 8888 222222222222 4 4 4 66 3333333333333333333333 77
lowQualScore : . ...... .. .. ........ . . . . .. . ...... . . . . .... .. .... .......... . . ....... ...................................... . . . . . ... .. . . .. . .. . .... . . . . . . . .... . .. . . ... .... ............ . . . .. ...................... ..
lowQualScore : 7 999999 99 99 77777777 3 2 2 0 00 0 000000 2 7 7 7 2222 00 8888 0000000000 6 2 8888888 22222222222222222222222222222222222222 7 7 5 0 7 777 22 0 0 00 0 00 8 1111 0 7 4 4 7 7 0 5555 0 55 0 0 000 7777 888888888888 4 4 4 11 2222222222222222222222 77
consensus : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
Reference ( family-2623 ) : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
gi|1 : AA-TGTCTTGCGACAAAACACTCGAG--CAACGCATTT--ATACGTAAGTTATCGAAGAACTTT
gi|10 : gacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgcatggagtgtgcgggtattgcacgttttctgctatttctctcaatcagacgatgtgttgttgaattaggcgtgacatgtaagcagttgataccaacttggttgtttgtatctgcgggtaacttattgcttattgcctttcatatgtgcatggttgtggttaagttgcagttgtgtaggaaaccaatgtatacttataaaaaaaaattgcacattttacttttatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaATATTGAGCAGGTATCGCATCAA-TATCTTCAGA------ACTG--G--CAATGC---------------TTATCGTG------TCTACACGGC--GAGAAGCAG-CAAC--------------TC-GTCGATACGTA-CAC----
gi|11 : gtagcaatgttgaggaaatgttgaaaacgaataaaagcgtatgaatgttaaacaggtatctttggaactcatggcatgtcgggagcATGTCGAACAAATATGGTATTAA-CGTCTTTCAA------ACTC--G--CAACGCA--G--AT-CGTAGTTa
gi|12 : gtacttatcaaaaaatatactcacactgcaattatcattgtccaaattcgtaagaatgtcgaggaaatgtcgaactgaaggcgtaaacactcgaatgaTCTAAATGGCTGGAGAAG--------AAG---CGAC-ACATT-GCTGAAACGCA-CAC----GAGA--TTG-------CA----------TACATT--A-ATTTA-------AC-ATAC-------------T--TTTTAACCG-C----------GTTTGAAAT-TCTCGTCGTTGC-CTGACGAGTTTTGGCGAAATGAAGAGA---CGTTTCT--TC
gi|15 : CGACAGCCA------TACGAGA-------------------TTGGACATC----------AATTCAAATGTCT-----------TGGTG--TTTTGGCGACATGTAGAGA---CATTTCT--TTG-AC-ATGC--ACATG--A-ATGTA--CGGATCT----TA--------------AAG-AGTTGT----GGC-AAGT--TAT-A-AC---TC-ttcgccaagac
gi|17 : cgacacaacgcGTGTTCAAGTCC----TACAACGA-CACC-T-AAG-GGTTGT----GGCCGAGT--TAT-A-AT---CT-GC-CA------------AA-CTT-C-GT--G---------GTA----------TCGATTTGTGAC
gi|19 : aaTTCAAGTCC----TACA-CGAACAACATGAAGGAGTTGT----GGC--AGT--TATTA-AC---TC-GC-CA------------AA-A---C-GT--GACT------GTA----------CCttt
gi|2 : AA-TGTCTTGCGACAAAACACTC--GAGCAACGCA--TTTATACGTAAGTTATCGAAGAACTTTCTAAACGGC--GAGTAGC-GGCGACATGTGACGACTACATCTGTCGATACGCAGCAC----GACA--CTGGA--CGACAATATTCGACATGTCTTCGACATCTA------TACGAGACAAAACTCGCACGACAATTTTAAAC--C----------GTCTAAGAT-TCTCGCCGTGGCGCTGGCGA-TCTTGGC-ACATGAAGAGA---CAGTTCTTATCGAACAATCC--ACA-GGAAC-TGTGTTCAAGTCC----T--A-CGATCAAC-TGAAG-G--TGT----GGC-GAGTAGTAG-A-AC---TCGGC-CA------------AAGACT-CTATTAG---------GTA----------CTAACTTGTGACA-GTG
gi|20 : tatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaGACATGTGACGAC-ACATC-GCCGATACGCA-CAT----GACA--CTTGA--CGACA----------TATAT
gi|3 : ATGTTGAGCAGATATCATATTAAATGTCTTTCGA------ACTC--G--CAACACA--G--AT-TGTAGTTTATCGCGATACTTTCTATATGGT--GA-----------CATGTGATGAC-ACATC-GCCGATACGTA-CACATTAGACAACTTGTATTCAACA----------TGTCTTTGACATCTACATGTATATGAGAA-------------CAA-----AAC--TCGCACGACAAGTTTAAAAT-TTTCGCCACTGC-CTGGTGAGTATTGGCAACATGAAGAGACGTCATTTCT--TCG-AC-ATGCAGACG-G--ACATGTGTTCAGGATA----TACA-CGA-C-AC-TG-----GTTATATAGAGA-GAGA--TAT-ATAA---TA-A---A------------AA-ACTCC-GT--G---------GTA----------CCAACTCATGACA-TTGTGA
gi|4 : tacttatcaaaatatatatgcagattatcatcgtcaaaattagtaacaatgttgaggaaatgtggaactgaatacgtaaacacccgtatgaatgtcgagcaggagtcttgggaacttgtacgtgtgtcgagtgcATGTTGAGCAGATATCGTATTAA-TGTATTTCGA------ACTC--G--CAACGCA--G--AT-CGTCGTTTATCGAGAAACTTT
gi|5 : tcgacatttatacgagttcttgacgagaaatatacgaatgtagccgatccactgcgacttggatataccgatatttgaatagttcacgctcgcattatttgcctattgcatcttttctctattctctcattcagacgttgtgttgttgaataggttgtacatgtaacagtgatacaatgtcttgttctgcggtaacttatgcctttctatgtgcatgacggtgttagtcggtgtctagagaacaattatacttatcaacaaatttatgcacattacttttatgcaatcatcatcgtcaaaattcgtaacaatgtcgggaaaatgtcgaattgaacacgtaaacactcgtatgaatgtcgagcaggagtcttggaaactcgttgtatgtcgagtgcG-ATTTTT----GGC-GAGT--TTT-A-ACCCTTC-CCTCAGCTCCTCGTGGTAA-ACT-C-GT--ATCCTCACCTGTT----------CCAACTCGTGACAGTTGTGAC
gi|6 : aagcccgTTTT----GGC-GAGT--TTT-A-AC---TC-CC-CA------------GC-ACT-C-GT--G---------GTAACTCGTAGTTCCAAATCGTGACA-GTGTGACcaacgagtttacactgcttttgcatgatgggagacgaaccagtagtaggatttctgcatcgagttctgctgtcccacactgacacgagaatagtagcgaagtttctttttaaatcgagtttaaggctgtcctctgggatttgatgtgtaccgacacgttctccagcatggaaatttttctacgagaatgtacgaactcaagcgagtctagtcggacatttacacgattcttgggacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgca
gi|7 : agccccgATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--GAACGCA--G--AT-CGTAGTTAATCTCGAAACTTTCTAAACGGC--GAGAAGC-GTCGATATGTGATGAC-ACATC-GCCAATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGG-CTGGCAAGTACTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCT--ACA-G--ACATGTGTTCAAGTCC----TATA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-TTGTGACattccacgagtttatgatgctttttgatgatggagacagcagtacgatttctgctcaggttctcttccacactgacacgagattaggacgacagtttcttttttaacacgagtttaaggcgtcctctgtacatgtgtgtacgacactttctccacaatggaagagttttctacgaggaatgtacgaactctagcgagtctaatcgacatttacacggagttcttgacgaggtatgacgaatgtttgcgagaaatgtacgaatgtagccgatctactgcgacttggatatacctatattttgaatattcacgctcgcattatttgttctattg
gi|8 : TTTT----GGC-GAAA--TAC-A-AC---TC-CC-CA------------GA-ACT-C-GT--G---------AT-------------AACTCGT
gi|9 : cctggtcacattatgatttggaactacatatatAC-------------CAATT---AAC--C----------GTTTGAAAT-TCTCGCCGCTGC-CTGGCGAGTACTGGCAGCATGAAGAGG---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCCTACGTACA-CGA-CAAC-TGAAG-AGTTGC----GGC-GAGT--TAT-A-AC---TC-CT-CA------------AA-ACT-C-GT--GGTACATAT-GTA----------CCAACTCGTGACA-GTGTGAaaaatcacgagtttccaatgattttggtgcaggggagatcagttcgacttctgtttgagttcttttccacactgacatgagagcgggacaacagttgcttttgaactcaaacttagggcgtcctctatacgatgtgtgcacaacattttccctagaatggaagatttttctcgagaatgtacaagatctggcaagaatgacatata
blockSeqs : A CAAAAC . AG TTTATA T T G A TG A CGGCG T T T G ATTA AC TATT ATATTCGACA C CATGTAT CAAAACTCGCACGACAATTTTAAACC G G G T G CGT TA A A AG . GA TACG C A A A A G ATAG C AG T T CCT GGC GCTCCTCGTGGT G C T TA GTAACTCGTAGTT GT
blockSeqs : . . . . GAT G A A A . T CGTCG T . . . . . GA . C T ACAAAACTCGCACGACAA . . G C A . . . . . . . . C . T A . . . . . . . . CCT . . . . . TCCTCACCTGTT T
blockSeqs : . . . . GAT T C A T . A . T . . . . . GA . T T CCAATTTTAAACC . . G A G . . . . . . . . C . . A . . . . . . . . GC . . . . . GTACATATGTA G
blockSeqs : . . . . GAT T A A A . . . T . . . . . GA . C T CCAATTAACC . . . A A . . . . . . . . T . . A . . . . . . . . CC . . . . . ACTGTA T
blockSeqs : . . . . GAT T C . . . . . . TTGGACATC . . . A . . . . C . . A . . . . . . . . GC . . . . . GTA G
blockSeqs : . . . . . . . . . . . . . . . . . . . CC . . . . . GTA
blockSeqs : . . . . . . . CT . . . . . GTA
blockSeqs : . . . . . . A . . . . . AT
blockSeqs : . . . . . .
blockSeqCons : ****** ** GAT***** GA** T****** CTCGGACAATTAACC***********************
originalCons : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTA------TACGAGAC-------------CAATTTTAAAC--C----------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
finalCons : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCAGAT-----CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA--CGACA----------TATATTCGACATCTAT------ACGAGACTCGGACAATTAACC-----------------------GTTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTACATGTAATATGTGTATGACATTTCGCCTTCTGACACCGTACATGTATATGTGGTATGAACATTTCGCCTTCTGACACCTACATGTATATGTGTATGAACAATTGACAAAACGGCACGCAGTTGAATAATCTTCACAA
Unaligned ( gi|14 ): AATAAACTGAATAAAAAATATCCACCCTACTTTTCTACAATCATCACAGTGAAAATGCATAACCATATCGAGGAAATGTCGAACAGCACACGTACAAAGAACAGGTGTAGCTAGAAAACTCATTACAAGTTGAG
Unaligned ( gi|16 ): ATCACAAAACATCGTGGCAATTTCGAGGATTGTGAAACAGAACACCTAACAAAAGTCTTGGAAACTAGTTGCATGTCAGGTGCATTTGAGCAGATAT
Unaligned ( gi|18 ): TCTCTCATTCAGACGTTGTGTTGTTGAATATATAGGCTGTACATGTAACAGCGATACAATGTCTTGTTCTGCGGTAACTTAT
Alignments
lowQualScore : 333333 11111111 11 2222 1111 11 333333333333 111111 5555555555555555555555555 111 11 11 1111 1 222222222222 4444444444444444444444
lowQualScore : 5 222222 77 77 66666666 1 5 4 1 11 1 4444 3 6 6 6 4444 11 999999999999 0 3 1 999999 6666666666666666666666666 6 99 6 6 2 1 3 111 99 8 8 11 8 11 0 2222 3 5 1 1 5 0 5 8888 4 55 4 4 777 8888 222222222222 4 4 4 66 3333333333333333333333 77
lowQualScore : . ...... .. .. ........ . . . . .. . .... . . . . .... .. ............ . . . ...... ......................... . .. . . . . . ... .. . . .. . .. . .... . . . . . . . .... . .. . . ... .... ............ . . . .. ...................... ..
lowQualScore : 7 999999 99 99 77777777 3 2 2 0 00 0 0000 2 7 7 7 2222 00 111111111111 3 0 0 222222 2222222222222222222222222 7 22 7 7 5 0 7 777 22 0 0 00 0 00 8 1111 0 7 4 4 7 7 0 5555 0 55 0 0 000 7777 888888888888 4 4 4 11 2222222222222222222222 77
consensus : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA----------CGACATATNTTCGACATC------TATACGAG------ACTCG---GACAATT---AACCG--TTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
Reference ( family-2623 ) : ATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--CAACGCA--G--AT-CGTAGTTTATCGCGAAACTTTCTAAACGGC--GAGAAGC-G-CGACATGTGACGAC-ACATC-GCCGATACGCA-CAC----GACA--CTGGA----------CGACATATATTCGACATC------TATACGAG------ACTCG---GACAATT---AACCG--TTTAAAAT-TCTCGCCGCTGC-CTGGCGAGTNTTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCC----TACA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-NTGTGAC
gi|1 : AA-TGTCTTGCGACAAAACACTCGAG--CAACGCATTT--ATACGTAAGTTATCGAAGAACTTT
gi|10 : gacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgcatggagtgtgcgggtattgcacgttttctgctatttctctcaatcagacgatgtgttgttgaattaggcgtgacatgtaagcagttgataccaacttggttgtttgtatctgcgggtaacttattgcttattgcctttcatatgtgcatggttgtggttaagttgcagttgtgtaggaaaccaatgtatacttataaaaaaaaattgcacattttacttttatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaATATTGAGCAGGTATCGCATCAA-TATCTTCAGA------ACTG--G--CAATGC---------------TTATCGTG------TCTACACGGC--GAGAAGCAG-CAAC--------------TC-GTCGATACGTA-CAC----
gi|11 : gtagcaatgttgaggaaatgttgaaaacgaataaaagcgtatgaatgttaaacaggtatctttggaactcatggcatgtcgggagc----------CGACATTTCCTCGACATT------CTTACGA-------ATTTG---GACAATa
gi|11 : gtacttatcaaaaaatatactcacactgcaattatcATGTCGAACAAATATGGTATTAA-CGTCTTTCAA------ACTC--G--CAACGCA--G--AT-CGTAGTTaactgaaggcgtaaacactcgaatgaatgtcgaacaaatatggtattaacgtctttcaaactcgcaacgcagatcgtagtt
gi|12 : gtacttatcaaaaaatatactcacactgcaattatcattgtccaaattcgtaagaatgtcgaggaaatgtcgaactgaaggcgtaaacactcgaatgaTCTAAATGGCTGGAGAAG--------AAG---CGAC-ACATT-GCTGAAACGCA-CAC----GAGA--TTG---------------CATACATT--A-ATT------TA-AC-AT------ACTTT--------TT---AACCGCGTTTGAAAT-TCTCGTCGTTGC-CTGACGAGTTTTGGCGAAATGAAGAGA---CGTTTCT--TC
gi|15 : CGACAGC------CATACGAG------ATT-G---GACA-TC---AA------TTCAAATGTCT-----------TGGTG--TTTTGGCGACATGTAGAGA---CATTTCT--TTG-AC-ATGC--ACATG--A-ATGTA--CGGATCT----TA--------------AAG-AGTTGT----GGC-AAGT--TAT-A-AC---TC-ttcgccaagac
gi|17 : cgacacaacgcGTGTTCAAGTCC----TACAACGA-CACC-T-AAG-GGTTGT----GGCCGAGT--TAT-A-AT---CT-GC-CA------------AA-CTT-C-GT--G---------GTA----------TCGATTTGTGAC
gi|19 : aaTTCAAGTCC----TACA-CGAACAACATGAAGGAGTTGT----GGC--AGT--TATTA-AC---TC-GC-CA------------AA-A---C-GT--GACT------GTA----------CCttt
gi|2 : AA-TGTCTTGCGACAAAACACTC--GAGCAACGCA--TTTATACGTAAGTTATCGAAGAACTTTCTAAACGGC--GAGTAGCGG-CGACATGTGACGACTACATCTGTCGATACGCAGCAC----GACA--CTGGACGACAATATTCGACATGTCTTCGACATC------TATACGAGACAAA-ACTCGCACGACAATTTTAAACCG--TCTAAGAT-TCTCGCCGTGGCGCTGGCGA-TCTTGGC-ACATGAAGAGA---CAGTTCTTATCGAACAATCC--ACA-GGAAC-TGTGTTCAAGTCC----T--A-CGATCAAC-TGAAG-G--TGT----GGC-GAGTAGTAG-A-AC---TCGGC-CA------------AAGACT-CTATTAG---------GTA----------CTAACTTGTGACA-GTG
gi|20 : tatgcatcatctcttcaaatgtcataacaatgtcgcggaagaatgtcgaaattgacacgtaacagctgcagcattgaaatgtcgagcagaggtcttggagaactcacattgttccctaccacagcttatctgtcgtatacttaaacaatgcaaccatgcacattagaGACATGTGACGAC-ACATC-GCCGATACGCA-CAT----GACA--CTTGA----------CGACATATAT
gi|3 : ATGTTGAGCAGATATCATATTAAATGTCTTTCGA------ACTC--G--CAACACA--G--AT-TGTAGTTTATCGCGATACTTTCTATATG------------G-TGACATGTGATGAC-ACATC-GCCGATACGTA-CACATTAGACAACTTGTATT--------CAACATGTCTTTGACATCTACATGTATATGAGAACAAAACTCG---CACGA-C---AA--G--TTTAAAAT-TTTCGCCACTGC-CTGGTGAGTATTGGCAACATGAAGAGACGTCATTTCT--TCG-AC-ATGCAGACG-G--ACATGTGTTCAGGATA----TACA-CGA-C-AC-TG-----GTTATATAGAGA-GAGA--TAT-ATAA---TA-A---A------------AA-ACTCC-GT--G---------GTA----------CCAACTCATGACA-TTGTGA
gi|4 : tacttatcaaaatatatatgcagattatcatcgtcaaaattagtaacaatgttgaggaaatgtggaactgaatacgtaaacacccgtatgaatgtcgagcaggagtcttgggaacttgtacgtgtgtcgagtgcATGTTGAGCAGATATCGTATTAA-TGTATTTCGA------ACTC--G--CAACGCA--G--AT-CGTCGTTTATCGAGAAACTTT
gi|5 : tcgacatttatacgagttcttgacgagaaatatacgaatgtagccgatccactgcgacttggatataccgatatttgaatagttcacgctcgcattatttgcctattgcatcttttctctattctctcattcagacgttgtgttgttgaataggttgtacatgtaacagtgatacaatgtcttgttctgcggtaacttatgcctttctatgtgcatgacggtgttagtcggtgtctagagaacaattatacttatcaacaaatttatgcacattacttttatgcaatcatcatcgtcaaaattcgtaacaatgtcgggaaaatgtcgaattgaacacgtaaacactcgtatgaatgtcgagcaggagtcttggaaactcgttgtatgtcgagtgcG-ATTTTT----GGC-GAGT--TTT-A-ACCCTTC-CCTCAGCTCCTCGTGGTAA-ACT-C-GT--ATCCTCACCTGTT----------CCAACTCGTGACAGTTGTGAC
gi|6 : aagcccgTTTT----GGC-GAGT--TTT-A-AC---TC-CC-CA------------GC-ACT-C-GT--G---------GTAACTCGTAGTTCCAAATCGTGACA-GTGTGACcaacgagtttacactgcttttgcatgatgggagacgaaccagtagtaggatttctgcatcgagttctgctgtcccacactgacacgagaatagtagcgaagtttctttttaaatcgagtttaaggctgtcctctgggatttgatgtgtaccgacacgttctccagcatggaaatttttctacgagaatgtacgaactcaagcgagtctagtcggacatttacacgattcttgggacgatttatgacgaatgtttggcgagaaatgtacgacaattgagccgacactggtgactggggagtgatgaccgatattgaaggatttccacgttcgca
gi|7 : agccccgATGTTGAGCAGATATCGTATTAA-TGTCTTTCGA------ACTC--G--GAACGCA--G--AT-CGTAGTTAATCTCGAAACTTTCTAAACGGC--GAGAAGC-GTCGATATGTGATGAC-ACATC-GCCAATACGCA-CAC----GACA--CTGGA----------CGACATATATTCGACATC------TATACGAG------AC--------CAATTTTAAACCG--TTTAAAAT-TCTCGCCGCTGG-CTGGCAAGTACTGGCGACATGAAGAGA---CATTTCT--TCG-AC-ATCT--ACA-G--ACATGTGTTCAAGTCC----TATA-CGA-CAAC-TGAAG-AGTTGT----GGC-GAGT--TAT-A-AC---TC-GC-CA------------AA-ACT-C-GT--G---------GTA----------CCAACTCGTGACA-TTGTGACattccacgagtttatgatgctttttgatgatggagacagcagtacgatttctgctcaggttctcttccacactgacacgagattaggacgacagtttcttttttaacacgagtttaaggcgtcctctgtacatgtgtgtacgacactttctccacaatggaagagttttctacgaggaatgtacgaactctagcgagtctaatcgacatttacacggagttcttgacgaggtatgacgaatgtttgcgagaaatgtacgaatgtagccgatctactgcgacttggatatacctatattttgaatattcacgctcgcattatttgttctattg
gi|8 : TTTT----GGC-GAAA--TAC-A-AC---TC-CC-CA------------GA-ACT-C-GT--G---------AT-------------AACTCGT
gi|9 : cctggtcacattatgatttggaactacatatatCAATT---AACCG--TTTGAAAT-TCTCGCCGCTGC-CTGGCGAGTACTGGCAGCATGAAGAGG---CATTTCT--TCG-AC-ATCC--ACA-G--ACATGTGTTCAAGTCCTACGTACA-CGA-CAAC-TGAAG-AGTTGC----GGC-GAGT--TAT-A-AC---TC-CT-CA------------AA-ACT-C-GT--GGTACATAT-GTA----------CCAACTCGTGACA-GTGTGAaaaatcacgagtttccaatgattttggtgcaggggagatcagttcgacttctgtttgagttcttttccacactgacatgagagcgggacaacagttgcttttgaactcaaacttagggcgtcctctatacgatgtgtgcacaacattttccctagaatggaagatttttctcgagaatgtacaagatctggcaagaatgacatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CTACATGTAATATGTGTATGACATTTCGCCTTCTGACACCGTACATGTATATGTGGTATGAACATTTCGCCTTCTGACACCTACATGTATATGTGTATGAACAATTGACAAAACGGCACGCAGTTGAATAATCTTCACAA
Unaligned ( gi|14 ): AATAAACTGAATAAAAAATATCCACCCTACTTTTCTACAATCATCACAGTGAAAATGCATAACCATATCGAGGAAATGTCGAACAGCACACGTACAAAGAACAGGTGTAGCTAGAAAACTCATTACAAGTTGAG
Unaligned ( gi|16 ): ATCACAAAACATCGTGGCAATTTCGAGGATTGTGAAACAGAACACCTAACAAAAGTCTTGGAAACTAGTTGCATGTCAGGTGCATTTGAGCAGATAT
Unaligned ( gi|18 ): TCTCTCATTCAGACGTTGTGTTGTTGAATATATAGGCTGTACATGTAACAGCGATACAATGTCTTGTTCTGCGGTAACTTAT