lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111 11111111111111111111111111111111111111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 333 2 4444 4444444444 333 22 11 999999999999999 111 1 1 5555555 1 11 111 44444444444444 1 333333 1 55555555555555 1111 11 33333333 1 2 22 11 1 11 11 1 22222 5555555555555555 111 1 22222222 11 1 1 222222 55555 2222 1 33333 1 11111 999999999 111 666666666666 1 1 1 111111 11 1 99999999999999999999 111111 111111111111111111111111111111111111111111 22 111 11111 1 2222 1 44444444444444444 1 2 7777777777777 2222222 11 2222222222 1 11 11 1 11111 1111 11 3333333333333333333 1 4444444 11 1 1 444444444 44444444444444444444 2 11 3333333333 111 111 00000000000000000000000000000000000000 2222 11 11 1 44444444444444444444444 1 1 1 2222 22222 1 222 777777777777 222 1 222 2 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 3333 555555555 1 1 99999999999999 777777777 2 2 22 22222222 4 2 2 7777777 2 222 2 2222 777777 2 3333 1 4444 6666666 1 1 22 666666666666 2 1 55555 22222 333333 55555555555555555 3333 1 444444 2222 11 4444444444444 55555555555555 1 3333333 1 111 111 33333 11 777777777777777777777777777777777777777777777777777777 2 2 55555555 1 5555555 1 1 7777777777777777777777777777777777777 1 22 2 11
lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 555 0 2222 3333333333 2 3 4 2 555 77 88 111111111111111 7 777 3 3 0000000 3 88 777 33333333333333 3 111111 0 77777777777777 9999 33 66666666 0 0 33 33 0 22 33 0 55555 0000000000000000 777 0 88888888 3 2 33 0 0 222222 0 00000 1111 2 0 2 22222 0 44444 222222222 3 0 777 000000000000 3 9 3 0 3 0 2 111111 8 8 0 11 6 77777777777777777777 0 8 8 333333 5 6 777777777777777777777777777777777777777777 55 444 0 0 77777 0 1111 2 0 77777777777777777 0 0 0000000000000 6666666 11 0 0 0000000000 3 0 33 33 0 88888 8888 3 33 6666666666666666666 0 4 3333333 33 3 5 0 444444444 4 3 88888888888888888888 0 88 9999999999 111 777 11111111111111111111111111111111111111 8 0000 00 33 7 0 11111111111111111111111 6 3 3 7 1 3 0000 77777 3 333 888888888888 333 3 333 0 6 7 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 7 0000 6 6 111111111 3 3 88888888888888 2 2 555555555 3 0 77 99999999 0 0 4 0 0000000 0 111 0 4 5555 444444 0 2222 5 2222 5555555 7 5 77 777777777777 0 5 22222 22222 444444 44444444444444444 3333 3 888888 4444 6 44 9999999999999 66666666666666 3 6 8888888 3 888 999 22222 88 7 777777777777777777777777777777777777777777777777777777 0 55 0 00000000 3 1111111 3 3 0000000000000000000000000000000000000 3 11 1 6 88
lowQualScore : ........................................................................................................................................... ... . .... .......... . . . . ... .. .. ............... . ... . . ....... . .. ... .............. . ...... . .............. .... .. ........ . . .. .. . .. .. . ..... ................ ... . ........ . . .. . . ...... . ..... .... . . . ..... . ..... ......... . . ... ............ . . . . . . . ...... . . . .. . .................... . . . ...... . . .......................................... .. ... . . ..... . .... . . ................. . . ............. ....... .. . . .......... . . .. .. . ..... .... . .. ................... . . ....... .. . . . ......... . . .................... . .. .......... ... ... ...................................... . .... .. .. . . ....................... . . . . . . .... ..... . ... ............ ... . ... . . . ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . .... . . ......... . . .............. . . ......... . . .. ........ . . . . ....... . ... . . .... ...... . .... . .... ....... . . .. ............ . . ..... ..... ...... ................. .... . ...... .... . .. ............. .............. . . ....... . ... ... ..... .. . ...................................................... . .. . ........ . ....... . . ..................................... . .. . . ..
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 5555 5555555555 5 0 0 5 000 55 33 000000000000000 3 777 3 3 0000000 3 33 777 00000000000000 3 000000 0 00000000000000 5555 88 22222222 0 0 88 88 0 55 22 0 00000 0000000000000000 555 0 55555555 2 5 88 0 0 222222 2 00000 2222 5 0 5 55555 0 33333 333333333 2 2 555 888888888888 2 2 3 0 2 0 5 222222 0 0 8 00 0 00000000000000000000 8 0 0 666666 0 4 333333333333333333333333333333333333333333 88 000 8 6 88888 0 2222 5 0 00000000000000000 0 0 0000000000000 0000000 00 6 8 8888888888 2 0 88 88 0 55555 5555 5 88 8888888888888888888 0 0 2222222 88 2 0 0 000000000 0 2 00000000000000000000 0 88 8888888888 000 555 55555555555555555555555555555555555555 8 8888 22 88 0 0 88888888888888888888888 7 3 3 3 0 3 0000 77777 3 333 777777777777 333 3 333 0 0 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3 7777 0 7 333333333 3 3 77777777777777 5 5 555555555 0 0 55 55555555 0 0 0 0 5555555 0 000 0 0 0000 555555 0 5555 5 5555 0000000 0 5 55 555555555555 0 0 00000 77777 000000 00000000000000000 0000 3 333333 0000 7 00 7777777777777 77777777777777 3 7 7777777 3 777 777 00000 33 3 777777777777777777777777777777777777777777777777777777 0 00 0 77777777 3 7777777 3 3 3333333333333333333333333333333333333 3 77 0 7 33
consensus : ACATTAATTGATANAGNGCGGCCAAACTTTTAATTNTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGANANGATTGGGCATTCCCTTTGCGGGGTCACAATGGAACTGGAATCGTAACAACTCCAGTTGACCCAANANACANTNAACCGTCAATATTTAGG--CAAAA----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CGTAGTGTT-GA--AA-T-ATAA--AA-A-TT--NT-TG-ATTCCAAAATAA-TG---TCTC-TG--CG--C-GC----CTCATCAG--TGTT--AAAA--------TA-ATT-GCG-AATTC--TTTT-GT-CATG-TCC-CTC-----CTTCTTTTAC-C-CA-TGCTT-GG-GGGAACTTG---CA-C-----AN-ATATCA--AAATCTC-CA-AC-A----AAGT--A-AACA----TNTTG-CAAGGTTCACA-TTGGT-AAAATATCAAATGAGCNTGCGACG-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCT-AATAACTGGAGTTGAT--GAT-GATTC-GGT---CTG---------AGTATGCTC-T-GT--TGA-TGAANAGTGTGGTTCTC--TTGACTACTAANGNGNGNCGCGNNTCCNNGANTAA-AA-ATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACAA-AG---A------ACAA--GGA-AT-ATTTTTTA-----------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGNA--AGATGC-AAC---AAT---T---TTTT-TNAAACAT---ATCA--TCATATTATGCACCA-AA--C-ATAA-CCNTTGTATTTAGAAGCA---AAAAAAAGAGAA-GG-GGACTC-ATAAAT-GAAATCGGG-----TC--AAT-A-TCA---GGGATGC--AGT---GC---TGGA-----TC---T--AGAC----GGGACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A----T-T-CGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAAATACATGTATGTACAACAAATTGACCCTAAATAATTTTA--AG-----AAAT-GCTTTA--GATATGCTTAATGGAATTGTTTTGTAATAGATNNTGCATGCCATGGAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAACCGTANTTTAAANNATTACCAAACTAATGTCGTGNGAATTAATNGAATTTCTTTATCGCATCACACACANNCATNCAGGCCCCCTGGTGCAT-----ACACAATNGTGACACATTGTATGTACACATCACA--TCT-TGTACAANATTTAGGTTACGATTGC----CATCACATTTATTTTATT-N--TCAC-AGGC-CCAGAAG----TA------TG-TA-----A--TAG-AGGTTATCGTATA-CGTC---ACG-T----A---G-NTAGATCTTA-ACA-CACGTATA-A-GTACATA------TGTNCCCCCCCCCCCT--TTTTTTCAA-----------CCA-AACACACAT-TTTTTGGAATCCCCGGNATCGCGTCAAAACNTNANAAACAGACCGCGCGNNCCGACGNANGACGCTTAACGAAGGGGGAAN----------------TGTCAT-TGTTT---TCATTATTTACTTTT-CANTT--GGT-TGAAGGGT-GCGTGTGTT-G-G-G----TGCGTGGNGGGGNGGGGTGCATTTGCAATAAGAACGTGCTATGTCTCGCGGTCAGAANACTNTNGCATGTA-CTAATTGNCTTAATNGNAC-ACTGTCACAGTTAAAATTANNTTTCTANTTGATTGATAAAACAAAACTTAA-ACTTCTGAACACGTTGTCGATCTTGGGGGTTCTTCTCTCCTCTTACGTTGAGTATTGCAACACTGCCAANGCTTGAATGGGCCGTACGGCTA-TACAGCACGTAA--AACAATCA--T-TTTTCTGT-G--AC--TT-T--TG-TTCTG-AA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GGT-AC-----CGTGTG---TCCA-C-TT--ACAT-TTCCCC-CATT--GC-GCAG-GGTTTTCACAA-TTTTC--AA-GCGAA--TTCAAAGC-A--NT-----TCGTTNAAAAAACNCCCGCATCCTAACGCCNCCGCCTNATGTGCACCTATNNGTCGTTTT-------GACG-GAGGTCATG--G--C-GACAATT-CTC-CCGC-----GATTT------TGATCGGCT-TGC----G--AAGATG-GTAAC-TCCGCCTCCCC-CGACGACG--TGGAAGC
Reference ( gi|1 ) : ACATTAAT-GATATAG------CA-----T-AATT--CATTT-ATTTAT------AAACA--CGTA-TTAAA---TAC-----------AGTA----G--------------------CCAA--TTTAAA------GCTA-------GCATTCC---TGTGGGGTCACAATGGAACTGG-ATC----TAACTC-AA--GAC--AAGATACATTGA---GTCAATAT--AGG--CAAAG----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA--AA-T-ATAA--AA-AATT--AT-TG-ATTCCAAAATAA-TG---TCTC-TG--CG--T-GC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTC-----CTTCTTTTA----CA-TACTT----GGGAACTTG---CA-C-----AG-ATATCA--AAATCTC-CA-AC-A----AAGT-----ACA----TGTTG-CAAGGTTCA-A-TCGGT-AAAATATCAAATAAGCCTTCAAAG-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCT-AATAACTGGAGTTGAT--GAT-GATTC-AGT---CTG---------AGTATGCTC-T-GT--TGA-TGAAGAGTGTGGTTCT---TTGACTACNNNNNNNNNNNNNNNNNNNNNNNNNAACAACATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACAA-AG---A------ACAA--AGA-AT-ATTTTTTA-----------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT---T---TTTT-TAAAACATA--ATCA--TCATATTATGCACCA-AA--CTATAA-CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGA-GGACTC-ATAAAT-GAAATTGGA-----TC--AAT-A-TCA---GGGATGC--GGT---GC---TGGA-----TC---T--AG------GGGACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAATGAAT-CTTTCTTTG-TTG--T--CA-TTT---TAGGCA----TCTTCGACCCCC---CCCC-CCCC---CCCC-CCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAAA-----ATATGTA------ATTG-TTGTAAAAAGTTTTATAAGTACACAAATTGCCCTAATGAT---TTTAATGAAAATACTTT-----AGAT-----ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGAT-------CCATAATT---ATTATCACCATACTA-TGTTGTAC--AT--ATG--ATTT-----TCGT-T-------AGTCATACAGGCC---TGATGCATGCAATACACTATAA-GACACATTTTAT---CACATC-CAGCTCTATGTACAAAATTCAGATT-C-ATTGCAACACGCCACATTTACTTTATT-T--TCAC-AGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTT---ACG-T----A---C-CTAAATCTTA-ATA-CATATATA-A-GTACCTCTCTCTCTCTTCCCCCCCCTTTTTTTTTTTTAAA-----------CCA-AATACACAT-TTTTTGGAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------TA---TGTCAT-TGTTT---TCATCATTTACGTT--CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGTGTG----TGTGTGGGGGGGGGGGGTGTATGTGCA-TAAGGACGTGCTAT-TCTCA--GTCAGAAA-CTATG-CATGTAACTA-TTATCT-AATA-CACAGCTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTTG----TTTTTCTCT-------CGTTGTATATTGCAAC--TGCAAATG-------GGGCC-TACAGCTATTACAGCACGCAA--AACAATTA--T-TTTTCTGT-G--AC--TT-T--TG-TTCTG-AA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GAT-AC-----CGTGTG---TCCA-TGTT--ACAT-TTCCCC-CAT---GC-GCAG-GTTTTTCACAA-TTTTC--AA-GCGAA--TTCAAAGC-A--TT-----TCGTTTAAAA--CATCTGCAACTAAACACCTCCACG-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGGACAATT-CTC-CCGC-----GATTTC----GTGATTGGCT-TGC----G--AAGATG-GTAACCTCCACCTCCCC-TGACGACA--TGGAAGCGT
gi|3 : ACATTAAT---TAGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAA------GCATTCC---TGTGGGGTCACAATGGAACTGA-ATC----TAACTCCAG--GACCCAAGATACATTTAACCGTCAATATTTAGGGTCAAAACGTCA-------ACTATTTATCA-TTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA--AA-TTATAAGCAACAATTTCATGTG-ATTCCAAAATAACTG---TCTC-TGGGCG--TCGC----CTCATCA---TGTT--AAAA--------TA-ATTTGCGAAATTC--TTTT-GT--ATG-TCC-CTC-----CGTCTTTTA----CA-TA-TT----GGGAACTTGAGACACC-----AT-ATATCA--AAATCTCTCA-AC-AACCTAAGT-----ACA----GTTTG-CAAGGTTCA-A------------ATC----GAGCCT-------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCT----AGAATA-TGTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGAT--GATGGATTT--GT---CTGTAGAATCGTAATATGCTCTT-GG--TGATTGAAGAGTGTGGTTCTCTGTTGA-TACTAAAATGTGCCCCATGTCCAAGAGTA--------------TTAATC---AAAC-----------AATGAATC-TGTA----AACAA-AGCGCAATCGCTACAG--GGAGATAACTCTTTA-----------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGAT---GACTTAAAT---T---TTTT-TTTAACATCTTGTCATGTAATATTATGTACCACAAC-CCCTAACCCATTGTATTTAGAAGCACCTAACAAAAATGAA-GG-GGACTCGATAAATAGAAATTCGACGGGTTT--AATGA-TCA---GGGATGC--ATTTTCG----TGGA-----TCTATT--AGACTTCTGGGACAATACA----TTCC-CCAGTTCACTAA-CCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAATGGAT-CTTCCTTCATTTG--T--CATTTT---TAGG-A----TTTTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgACATTAATTGA-ATAGG-----CAAACTTT-AATTT-CATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGTA----GACCCTAGTAGTTAAATCAAGCCAAACTTTAAA------GAGATGATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACTC-AATTGAT--AATAGATAATGA---GTCAATAT--AGG--CAAAGGCA-A-------A-TA-TTATCA-T-CAA-ATTGATCCAATGG-----CATAGTGTT-GA--AATT-ATAA--AA-ATTC--TC-TGAATTCCAAAATAAGTGGTTTCTCGTG--CGTTT-GCTTCTTTCATCAG---GTT--GAAA--------TACATTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTAG----CA-TACTTGAA-GAAAACTTG---CA-CCTCTTAT-A-ATCAAGAAATCTC-CAGACAA----AAGTACAAAACA----TGTTACCAAGGTGCA-ATTTGGTAAAAATATCAAAac
gi|10 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttGG--CAAAA----ATATATATA-TATTTATCAAT-CAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAA-T-ATAA--AA-A-TT--CT-TG-ATTTCCAAATAA-T----TGTC-TG---G--C-GC----CTCATCAGGATATTTAAAAA--------TA-ATT-GC--AATTC--TTTTAGTGCATG--CC-CTC-----TTTCTTTTACCCCCACTGCTCTGGGGGGAACTTG---CA-C-----AG-ATAC----AAATCTC-CA-AC-A----AAATTAATAACA----TTGTG-CAA-GTTCACA-TTGGT-AAAATACCAAATGAACA-GCGACGTTGGTATATT-----TATC---ATAG-------------GAATATT
gi|12 : tAA-TG---TCTC-TG--C-----------CTCATCAG--TGTT--AAAAATACAATGTA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTC-----TTTCTTTTACATGCA-TGCTT----GGGAACTTG---CA-C-----AGTATATCA--AAATCTC-CA-AC-A----AATT-----ATAACACTGTTG-CAAGGTTCACA-TTGGT-AAAAT
gi|8 : -TGGTATTTTTTTTCTATT---GTAG-------CCGGCAGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTT-------------GTTGAT----------AGGGTTGATCTAAT-AACTGGAGT----TG---------ATGATGATT-TAGT--C---TGAGTAATATG-CTCTG--TTGA-------TGAAGAGTGTGGTTCTTTGACTAA-AA-ATGCTGCTGT--ACC---AAGTATGATC--A--AATGAATC-TGTA----AACAA-AG---A------ACAA---GA-AT-ATCTTTTA-----------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT---TTT---T---TTTT-TTAAATAT---ATCA--TCATATTATGTA-CA-AA--C-ATAA-CCATTGTATTTAGAAGC-------ATAAAAAAATGAGGGACTC-ATAAAT-GAAATTGGG-----TT--AAT-A-TCA---GGGATGC--AGT---GC---TGGA-----TC---T--AGAT----GGGACAATACA---TTTCC-CC--TTCACTAA-C---C---TCATA--GCTT
gi|11 : cctTTTTTTTCTATT---GTAG-------T----AGA--------------TA-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCT-GATAACTGGAGTTGTG--GAT-GATTA-AGTATACT----------AGTA--CTC-T-ATTCTGC-T-----GTGTAATTCT---TTGACcttcttttgtttatgtttaggattct
gi|15 : atgaaaccagcttagcgcttttcagtactttgaA-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCT-AATAACTGAAGTTGAT--GAT-GATAC-------------------AGTATGCTC-T-GT--TGA-TGAATAGTGTGGTTgtgctgctgtaccaagtattatcattgtgcaaatgccaaatcataaac
gi|2 : --AGG-GTTGATCT-AATAACTGGAGT-GAT--GATTGATTC-G-----C-----------AGTATGCTC-T-GT--TGA-TGAAGAGTGTGATTCTC--TTGACTA
gi|2 : AAAATGCTGCTGT--ACC---AAGTATTATT--ATTAATGAATC-GGTA----AG-AA-AC---A------ACA----GA-AT-ATTTTTTA-----------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATAT---CTTT-TAAAA-AT---ATCA--TCATATTA-GCA-CA-AA--C-AT-A-CCTTTGTATTTAGAAGCA---TAAAAATGAGA---G-GGACTC-ATAAAT--AAATCGGG-----CC--AAT-A-TCA---GGGATGC--AGT---GC---TGGA-----TTA--TAGAG------GGGACAATA-A---TTCTA-CC--TTCAC-AA-C---C---TC--A--GCTTC----AACA-TTATTTGAAAATGGATATTTTCTTTG-TTG--T--CA-TTT---TAG------------GACCCCC---CCCC-CCCC---CCCC-CCaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|11 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactTGCTGCTGT--ACC---AAGTATTATC--A--agtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|6 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgGTTAGCCCTCAAGTACTATCCAA--AATGAATCATGTACAGAAACACCAG---A------ATAACGAGA-ATTATTTTTTATACAATCCTTTAATGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA---TATATCTTATAAAA-ATA---TCA--TCATATTATGCACCA-AAAACAATA--CCTTTGAATT-AGAAATA---AAAAAGAGAG------GGACTCCATAAAT-TAAATCGGG-----GCCAAAT-AATCAAAGGAGATGCAAGAT---GTAATTAGAAAATACA---T--AGAAGG--GGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAACAAA-A-TAA-TTAAAAA--ATT-CTTTAT--G-TTGGATAACA-ATTATATAGGAAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCttgtgcaaatgccaaatcataaac
gi|11 : ATTGTG-------CA--AATGCCAAATC---AT-----AAAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|2 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtattatcAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAAATACATGTATGTACAACAAATTGACCCTAAATAATTTTA--AG-----AAAT-GCTTTA--GATATGCTTAATGGAATTGTTTTGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATTTAAATTA----CAAACTA-TGT-GTAG--ATT-ATT--ATTTCTTTATTGTAT-------AAACATGTAG-CC---TGATGCAT-----ACACAATTA-GACACAT--------CACATC-T-------TGTACAAAATTTAGGTTAC-ATTG---------ACATTTA-TTTATT-A--TCAC-AGCC--CAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTC---ACG-T----AGATC-TTAGATCTTATACA-CATGTATACACATACATA-----ATGTGCCCCCCCCCCCTTGTTTTTTCAA-----------CCATAACACA-AT-TTTTAGGAATCTCGGTCATCTCAAACTTACAGCAGAAACTGGCCACGCAAAGCGACTTATGACGTGTGAAGGTGGGGGAAA------------------TTAT-TGTTT----CATTATTTACTTTT-CAGT---GGT-TGAAGGGT-GCGTGTGT-------------TGGGAGGGGGGGGGGTGCATTT--A-TAAG-ACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGTA-CTA-TTGACT-AATT-GA--ACTGTCACAGTTAAAATTACA-TTC-AATTGATTGATAAAAC--AACTTAA----TTTGAA-ACA-TGTCGATC-TG----TTTTTTTCTCCTCTTACGTTGAATATTGC-AC--TGC-AATGCTTGAATGGGCC-TA-GGC---TACAGCACGT-A--AACAAT----T-TTTTCTGT-G--AA--AA-T--TG-TTCTG----AATGG-GGTGTATC-TCACTC-CT-ACTATCC-TTCTG--GGT--C-----CGTGTG---T-CA-C-TT--ACAT-TT-CCC-CAT---GC-GCAG-GTCTTTCAC---TTTTC--AAGGCGAA--TTCAAAGCAA--TC-----TCATTc
gi|7 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaT-----AGATGC---ATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAACC-TACTT---AAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTC----TCTC-TCACACACACTCATTCAGGCCCCCTGGTGTAT-----ACAC-ATAGTAACACATTGTATGTATACATCACA--TCT--GTACAATATT-AG----CGATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAGAAA---G-ATAGATCTTA-GCATTACACATA-A--------------TGTCCCCCCCCCCTTTGTTTTTTTCAA-----------CCA-AACACACAT-TTTGTGGAATTCTCAGGATCATCTCAAAACTTACAGCAGAAACTGGCCACGCCCAAAGCGGACCCTTAACGAAGCCGTAAC----------------TATCAT-TG-TT---TCATTATTTACTTT--TCATT--GGTATAGAAGGT-GCGTGTATTTGGGGGAGGATGCGTGG
gi|5 : ctgcaacatcatatgtatacaacaaatggaccctaataatttggcacacagaacaatgctttagattatgcttaatagattgttatagtgtaaTTATT-TGGTCAC-AGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT----ACGAT----A---GACTATATCTTA-ATA--ACATATA-A-GTACATA-------CTTACCCCC----------TTGTAAAAAACCAGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCATGCGTCAAAAACTTACAAACAGAAAACGCGGCCCGCCGAAAGCGACTTAATGAAAGGTGAATGGTAGGGAAATTAAAGTG-CATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGTTGGCG-G----TG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCTCA--GTCAGAAAACTTTGGCATGTA-CTAATTATCTTAATAGCAC--CTGTCACAGTT-AAATTAACTTTCTATTTGATTGATAAAACAAA-CTT---ACTTCTGAACACGTT--CGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCAACACTGCCAAGG-------GGGCCGTACAGCTA---CAGCACGTAAGAAACAATTA--T-TTTTCTGT-GTGAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTAGC-TTTCTG--GATTAC-----CGTGTGGTGTCCACTGTTTAACAT-TTCCCC--ATTTTGCTGCAG-TGTTTGCACAA-TTTTCTGAGTGCGAAATTTCAAAGC-AATCT-----TCGTTAAAAAAACATCC----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-GTTT--------GACG-GAGGTCATGTAGGC--GACAAATATTCGCCG------GATTC------TGATTGCTT-TGTTGCGG--AAGATG-GTAACGTCCACCTCCCCATGACGACACGTGGAAG
gi|9 : GCACGTAA--ACCAATCAACTACTTTCTGTTG--ACACTT-TCCTGCTTCTG-AACAATGGAGGTATATCT-CACTC-C--ACTATCCTTTCTGCTGGT-ATGTAGACATGTG---TC-A-C-TT--ACATATTCCCCTCATT--GC-GCAGTGGTCTTCACAAATTTTC--AA-GCGAA--T-CAAAGC-A--ATCACAATACTTCAAAA--CTCCTGCATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCATG--G--CGGACAATT-CTC-CGGCCCCCCGACTTCCCCTGGAGGCGGCG-TGC----AGCATGATGCGTAAC-TCCGCCTCCCCCTGACGACG--TGGAAGCgc
gi|14 : TTT-------GACG-GAGATAATG--G--CTGACAATT-CTT-CCGC-----GATTT------TGATTGGCTGTGA----G--AAGATG-GTAA-CTGCGTCACCCC-CGACATCA--TGGAAGa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT
Alignments
lowQualScore : 111111111111111111111111111 111111111111111111
lowQualScore : 5555555555555555555555 2 11 222222 11 11 222 8888888888888888888888888888888888888888 11 2222 444444444 333 44444 4444444 333 22 11 555555555555555555 2 1 1 3333333 1 11 2 2222 1 222 1 222222 22222222222222 111 11 22222222 33 11 111 11 444444 333333 111 22222 11 333333333333 111 333333333 111 444444444444 1 1 555555555555555555 111 111111111111111111111111111 222222 11 111 11111 1111 1111 2222222222 33333333333333 2222222 111 11111 11 11 111 1111 11 11 2222222222222 22222 1 1111 11 1111 2222 1 11 1111 11111 111 22222222222 3333333333 222222 11 1111 11 1111111 11111 111 1 1 1 1 1 1111 11111 1 111 666666666666 111 1 111 55555 2 1 11 2222 55555 22 2222 6666666666666666666 1 11 1 2222 333 8888888888888 1 2 2 666666666666666666 11 2 111 2 000000000000000000 1111 22222 3333 11 11 22 444444444444444444 11 2222 1 2 77777777777777777777777777777 1 2222 3333333333333 1 11 111 111 11111 444444444444444444 1 1 1111 2222 333333333333 111 1 888888888888888888888888888888 1 1 111 1 33333 1 1 5555555555555555555 222222222 1 2 333 22 22 1 11 11 3333333 111 2 33333 2 111 33333 5555555 6666666 2 3333 111 222222 11 1 22222222 1 1 111 1 1 11 11 1 22222 111 1111111 1 1 1 222 1 1 111 1 22 11 444444444 11111 1 11 2 2 3333333 1 222 22 1 1 1 222222 33333333 11 1 22222222 1 1 1 111 11
lowQualScore : 9999999999999999999999 0 88 22 999999 88 66 111 9999999999999999999999999999999999999999 88 4444 111111111 777 0 6 7 55555 6 5555555 1 1 1 1 777 22 33 888888888888888888 3 0 0 0 5555555 2 0 33 0 1111 0 1 777 0 111111 8 88888888888888 111 11 99999999 8 8 8 11 11 8 8 88 8 222 11 777777 8 111111 3 444 8 00000 99 0 11 8 8 8 888888888888 8 1 8 111 8 44 999999999 0 444 666666666666 0 5 0 8 0 8 8 99 6 6 3 888888888888888888 111 6 6 999 3 666666666666666666666666666 22 1 666666 88 111 33333 8 7777 7777 8888888888 555 8 8 66666666666666 1111111 99 111 66666 0 8 11 11 8 444 8 3333 1 11 11 1111111111111 1 8 8 00000 0 0 8 4444 0 99 1 0 5555 1 9999 6 33 7777 44444 8 8 444 33333333333 4444444444 666666 11 5 4444 8 11 3 8 8888888 33333 777 0 0 0 0 22 0 1111 88888 0 777 333333333333 777 0 777 4 00000 0 3 5 88 4444 2 00000 77 7777 0 6 7 7 1111111111111111111 3 88 3 7 7 2222 6 666 8888888888888 3 3 3 888888888888888888 22 11 3 0 777 7 7 777777777777777777 1 8888 2 55555 9 6666 6 99 7 88 00 1 7 888888888888888888 99 4444 0 2 0 33333333333333333333333333333 2 0 8888 8888888888888 0 0 66 2 666 0 999 3 1 444 1 77777 888888888888888888 0 2 0 3333 2222 222222222222 1 6 1 4 888 777 5 0 3 111111111111111111111111111111 0 5 777 0 3 22222 0 0 3333333333333333333 1 1 777777777 2 3 000 11 1 00 3 44 11 44 5555555 7 7 22 888 1 3 88888 0 3 888 44444 0 6666666 0 6 7 6 1 5555555 3 77 5555 777 222222 33 0 33333333 0 0 000 0 3 2 99 0 33 9 3 33 0 3 55555 777 55 9999999 0 5 0 999 0 0 2 000 0 33 33 3 000000000 0 88 7 11 22222 0 2 1 77 66 7 3 22 3 7 2222222 0 777 33 0 0 0 777777 33333333 22 0 99999999 0 0 0 888 33
lowQualScore : ...................... . .. .. ...... .. .. ... ........................................ .. .... ......... ... . . . ..... . ....... . . . . ... .. .. .................. . . . . ....... . . .. . .... . . ... . ...... . .............. ... .. ........ . . . .. .. . . .. . ... .. ...... . ...... . ... . ..... .. . .. . . . ............ . . . ... . .. ......... . ... ............ . . . . . . . .. . . . .................. ... . . ... . ........................... .. . ...... .. ... ..... . .... .... .......... ... . . .............. ....... .. ... ..... . . .. .. . ... . .... . .. .. ............. . . . ..... . . . .... . .. . . .... . .... . .. .... ..... . . ... ........... .......... ...... .. . .... . .. . . ....... ..... ... . . . . .. . .... ..... . ... ............ ... . ... . ..... . . . .. .... . ..... .. .... . . . . ................... . .. . . . .... . ... ............. . . . .................. .. .. . . ... . . .................. . .... . ..... . .... . .. . .. .. . . .................. .. .... . . . ............................. . . .... ............. . . .. . ... . ... . . ... . ..... .................. . . . .... .... ............ . . . . ... ... . . . .............................. . . ... . . ..... . . ................... . . ......... . . ... .. . .. . .. .. .. ....... . . .. ... . . ..... . . ... ..... . ....... . . . . . ....... . .. .... ... ...... .. . ........ . . ... . . . .. . .. . . .. . . ..... ... .. ....... . . . ... . . . ... . .. .. . ......... . .. . .. ..... . . . .. .. . . .. . . ....... . ... .. . . . ...... ........ .. . ........ . . . ... ..
lowQualScore : 0000000000000000000000 5 55 00 555555 00 55 555 0000000000000000000000000000000000000000 00 0000 000000000 333 7 7 3 00000 7 3333333 0 0 0 0 000 77 88 000000000000000000 2 0 0 0 0000000 0 0 88 0 2222 0 0 555 0 000000 0 44444444444444 888 00 00000000 0 0 0 22 00 0 0 88 0 000 00 000000 0 000000 2 000 0 00000 00 8 00 0 0 0 000000000000 0 0 0 888 0 00 333333333 8 000 888888888888 8 6 0 0 8 0 0 22 7 7 3 555555555555555555 777 7 7 777 2 222222222222222222222222222 00 0 555555 55 777 33333 0 0000 0000 0000000000 222 0 0 22222222222222 7777777 22 777 77777 8 0 00 00 0 000 0 0000 0 00 22 6666666666666 0 2 0 00000 8 0 0 0000 8 00 0 8 4444 4 2222 0 00 0000 22222 0 0 000 22222222222 2222222222 000000 00 0 8888 0 00 8 0 0000000 00000 444 0 0 0 0 88 0 5555 55555 0 555 555555555555 555 0 555 0 00000 0 0 5 00 0000 5 00000 55 0000 7 7 3 3 7777777777777777777 3 33 3 3 3 7777 7 333 7777777777777 3 7 7 000000000000000000 00 33 7 7 000 3 0 333333333333333333 0 3333 0 00000 8 5555 7 00 3 33 77 0 3 333333333333333333 77 8888 0 5 0 00000000000000000000000000000 5 0 0000 0000000000000 2 0 55 0 888 6 666 2 0 000 4 88888 222222222222222222 0 5 0 0000 8888 888888888888 0 5 0 8 222 888 8 0 0 888888888888888888888888888888 0 5 555 0 2 55555 0 0 5555555555555555555 0 0 333333333 3 3 777 33 0 77 3 77 77 77 0000000 3 3 00 000 0 7 77777 7 3 333 00000 7 3333333 7 7 3 7 0 0000000 3 33 0000 000 222222 88 0 55555555 0 0 222 0 2 5 00 0 22 2 2 88 0 2 00000 555 00 5555555 0 0 0 222 0 0 5 222 0 88 88 2 888888888 2 33 3 77 33333 7 0 0 33 33 3 7 00 3 3 5555555 0 555 88 0 0 0 555555 55555555 00 0 22222222 0 0 0 000 88
consensus : ACATTAATTGA-ANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTCCAG--GAC-CAAGATACATTGA---GTCAATAT-TAGG--CAAA---A----A-------A-TATTTATCA-TCAA-ATTGAT-CAAT-G-----CATAGTGTT-GA--AATTATAAA----AA-TTCT---TG-ATTCCAAAATAA-TG---TCTC-T--GCGT-CGC----CTCATCAG--TGTT--AAAA--------TA-A-TT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTA--C--GCA-TACTT--G-GGGGAACTTG---CA-C-----A-TATATCA--AAATCTC-CA-AC-AAAN-T---A--A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCT-CGA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCT-AATAACTGGAGTTGATGAT-GATTCAGT---CTG---------AGTA---TGCTC-TGTTGA-TGAAGAGTGTGGTTCTC--TTGACTACTAAAGNGTGCCCCGNNTCCTTGACTAA-AA-ATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT---T---TTTTTTAAACAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGAN----GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-ATN-----TTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TAC-AG-----AA--AT-GCTTTA--GA-TATGCTTAATGGAATTGTT-T--TGTAATAGAT--TGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------CCGTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAAT-GAATTTCTTTATC---T-------ANTCATNCAGGCC-CCTGATGCAT-----ACACAATAGTNACACATT-TATG-ACACATCACA--TCT-TGTACAAAATTTAGGTT-C-ATTGC----CGCCACATTTACTTTATT-T--TCA-CAGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTT---ACG-T----AG---N-TAGATCTTA-ACA-CACATATA-A-GTACAT-ATNTCCCCC---CCCCCCC--T--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAAA-------T----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCAATAAGGACGTGCTAT-TCTCG--GTCAGAA-ACTAT-GCATGTA-CTAATTATCTTAATAGCACA-CTGTCACAGTTAAAATTACATTTCCATTTGATTGATAAAAC-AAACTT-A-ACTTTTGAA-ACGTTGTCGATCTTG---GTTTTTCTCTC------CGTTGAATATTGCAACACTGCCAATG-------GGGCC-TACGGC--T-ACAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCA--NTC----TCGTTNAAAAAACATCCGCA-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-G-AC-AATTCTC-CCGC-----GATTT--T-----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
Reference ( family-2541 ) : ACATTAATTGATANAGNGCGGCCAAACTTTTAATTNTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGANANGATTGGGCATTCCCTTTGCGGGGTCACAATGGAACTGGAATCGTAACAACTCCAGTTGACCCAANANACANTNAACCGTCAATATTTAGG--CAAA---A----A-------A-TATTTATCA-TCAA-ATTGAT-CAAT-G-----CGTAGTGTT-GA--AA-TATAAA----AA-TTNT---TG-ATTCCAAAATAA-TG---TCTC-T--GCG--CGC----CTCATCAG--TGTT--AAAA--------TA-A-TT-GCG-AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTA--C--CCA-TGCTT--G-GGGGAACTTG---CA-C-----A-NATATCA--AAATCTC-CA-AC-AAAG-T---A--A--ACA-TNTTG-CAAGGTTCACATTGGT-AAAATATCAAATGAGCNTGCGACG-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCT-AATAACTGGAGTTGATGAT-GATTCGGT---CTG---------AGTA---TGCTC-TGTTGA-TGAANAGTGTGGTTCTC--TTGACTACTAANGNGNGNCGCGNNTCCNNGANTAA-AA-ATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGNA--AGATGC-AAC---AAT---T---TTTTTNAAACAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCNTTGTATTTAGAAGCA---AAAAAAAGAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGAC----GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-------TTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA--AG-----AA--AT-GCTTTA--GA-TATGCTTAATGGAATTGTT-T--TGTAATAGATNNTGCATGCCATGGAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAACCGTANTTTAAANNATTACCAAACTAATGTCGTGNGAATTAATNGAATTTCTTTATCGCATCACACACANNCATNCAGGCCCCCTGGTGCAT-----ACACAATNGTGACACATTGTATGTACACATCACA--TCT-TGTACAANATTTAGGTTACGATTGC----CATCACATTTATTTTATT-N--TCA-CAGGC-CCAGAAG----TA------TG-TA-----A--TAG-AGGTTATCGTATA-CGTC---ACG-T----AG---N-TAGATCTTA-ACA-CACGTATA-A-GTACAT-ATGTNCCCC---CCCCCCC--T--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----NANAAACAGACCGCGCGNNCCGACGNANGACG-CTTAACGAAGGG----------GGAAN-------T----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTT--GGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGNGGGGNGGGGTGCATTTGCAATAAGAACGTGCTATGTCTCGCGGTCAGAANACTNTNGCATGTA-CTAATTGNCTTAATNGNACA-CTGTCACAGTTAAAATTANNTTTCTANTTGATTGATAAAACAAAACTTAA-ACTTCTGAACACGTTGTCGATCTTGGGGGTTCTTCTCTCCTCTTACGTTGAGTATTGCAACACTGCCAANGCTTGAATGGGCCGTACGGCTAT-ACAGCACGTA--AAACAATCA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GGTTTTCACAA-TTTTC-AA--GCGAA--TTCAAAGCA--NT-----TCGTTNAAAAAACNCCCGCATCCTAACGCCNCCGCCTNATGTGCACCTATNNGTCGTTTT-------GACG-GAGGTCAT---GGC--G-AC-AATTCTC-CCGC-----GATTT--T-----GAT-CGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
gi|1 : GCATTCC---TGTGGGGTCACAATGGAACTGGA-TC----TAACTCAAG---AC--AAGATACATTGA---GTCAATAT--AGG--CAAA---G----A-------A-TATTTATCA-TCAA-ATTGAT-CAAT-G-----CATAGTGTT-GA--AA-TATAAA----AAATTAT---TG-ATTCCAAAATAA-TG---TCTC-T--GCG--TGC----CTCATCAG--TGTT--AAAA--------TA-A-TT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTA--C----A-TACTT--G-GG--AACTTG---CA-C-----A-GATATCA--AAATCTC-CA-AC-AAAG-T---A------CA-TGTTG-CAAGGTTCA-ATCGGT-AAAATATCAAATAAGCCTTCAAAG-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCT-AATAACTGGAGTTGATGAT-GATTCAGT---CTG---------AGTA---TGCTC-TGTTGA-TGAAGAGTGTGGTTCT---TTGACTACNNNNNNNNNNNNNNNNNNNNNNNNNAACAACATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAAGA-AT-ATTTTTTA------------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT---T---TTTTTAAAACATAATCATC-----ATATTATGCACCA-AA--CTATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGAGGACTC-ATAAAT-GAAAT----TGGA-TC--AAT-A-TCA---GGGATGCGG--T---GC---TGGA-----TC---TAG------GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAA-TGAAT-CTTTCTTTG-TTG--T--CA-TTT---TAGGCATC-----TTCGACCCCC---CCCC-CCCC---CCCCCCCCCCCCC
gi|1 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctaAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAA-A-----ATATGTA------ATTG-TTGTAAAAAGTTT----TATAAGTACACAA--ATTGCCCTAATGA-T---TTTAATGAAAATACT-T--T-----AGAT-----ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGAT-------CCATAATT---ATTATCACCATACTA-TGTTGTAC--AT--AT-GATTTTCGTTA--------------GTCATACAGGCC---TGATGCATGCAATACACTATAA-GACACATTTTAT---CACATC-CAGCTCTATGTACAAAATTCAGATT-C-ATTGCAACACGCCACATTTACTTTATT-T--TCA-CAGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTT---ACG-T----AC---C-TAAATCTTA-ATA-CATATATA-A-GTACCT-CTCTCTCTCTTCCCCCCCC--T--TTTTT------TTTTTTAA----ACCA-AATACACAT-TTTTTGGAATCCCNNNN-NNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN----------NNNNNNNNNNTAT----GT-CAT-TGTTT---TCATCATTTAC-GTT-CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGT-------GT--GTGTGTGGGGGGGGGGGGTGTATGTGCA-TAAGGACGTGCTAT-TCTCA--GTCAGAA-ACTAT-GCATGTAACTA-TTATCT-AATA-CACAGCTGTCACAGTTAAA-TTACATTTC-ATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTTG----TTTTTCTCTC-------GTTGTATATTGCAAC--TGCAAATG-------GGGCC-TACAGCTATTACAGCACGCA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GA-TAC-----CGT---GTGTCCATGT-T---ACAT-TTCCCC-CA---TGC-GCAG-GTTTTTCACAA-TTTTC-AA--GCGAA--TTCAAAGCA--TT-----TCGTTT--AAAACATCTGCAACTAAACACCTCCA-CGCATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGG-AC-AATTCTC-CCGC-----GATTTCGT-----GAT-TGGCT-TGC----G--AAGATG-GTAACC-TCCACCTCCCC-T-GACG--ACATGGAAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcttgcagtcaattgaatatgtgcatgtgtttgtgcgtctggcaggtaacattgtcaaaagagatcaaaaccctgcaaaatatgtaattgttgtaaaaagttttataagtacacaaattgccctaatgattttaatgaaaatactttagatatgccatagcaaaaataatgtaaaagtcgatctgatccataattattatcaccatactatgttgtacatatgattttcgttagtcatacaggcctgatgcatgcaatacactataagacacattttatcacatccagctctatgtacaaaattcagattcattgcaacacgccacatttactttattttcacagacatcagaagtatgtaataggaggttatcgtatacgttacgtacctaaatcttaatacatatataagtacctctctctctcttccccccccttttttttttttaaaccaaatacacattttttggaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtcattgttttcatcatttacgttcaatttaggttgaagggtgcgtgtgtgtgtgtgtgtgtggggggggggggtgtatgtgcataaggacgtgctattctcagtcagaaactatgcatgtaactattatctaatacacagctgtcacagttaaattacatttcatttgattgataaaacaaaacttcacatttttgaaacgttatcgatcttgtttttctctcgttgtatattgcaactgcaaatggggcctacagctattacagcacgcaaaacaattatttttctgtgacttttgttctgaaaatggggtaatcttcactcctactagcctttctggataccgtgtgtccatgttacatttcccccatgcgcaggtttttcacaattttcaagcgaattcaaagcatttcgtttaaaacatctgcaactaaacacctccacgcatgtgcaccatcggtgttttgacggaggtcatgggccggacaattctcccgcgatttcgtgattggcttgcgaagatggtaacctccacctcccctgacgacatggaagcgt
gi|10 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctagcattcctgtggggtcacaatggaactggatctaactcaagacaagatacattgagtcaatataggcaaagaatatttatcatcaaattgatcaatgcatagtgttgaaatataaaaaattattgattccaaaataatgtctctgcgtgcctcatcagtgttaaaataattgcaattcttttgtcatgtccctccttcttttacatacttgggaacttgcacagatatcaaaatctccaacaaagtacatgttgcaaggttcaatcggtaaaatatcaaataagccttcaaagtggtattttttttctattgtagtagaatattgtttttggtaaaaagggatagcttgttgatagggttgatctaataactggagttgatgatgattcagtctgagtatgctctgttgatgaagagtgtggttctttgactacnnnnnnnnnnnnnnnnnnnnnnnnnaacaacatgctgctgttaaccaagtattatcaaatgaatctgtaaacaaagaacaaagaatattttttaagtattgtgcaaatgccaaatcattaatggacaaagcatgcacattaagtaagatacaacaatttttttaaaacataatcatcatattatgcaccaaactataaccattgtatttagaagcaaaaaaaaaaaaatgaggactcataaatgaaattggatcaatatcagggatgcggtgctggatctaggggacaatacatttccccttcactaacctcagctttcaaacattattaaaaatgaatctttctttgttgtcattttaggcatcttcgaccccccccccccccccccccccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGG--CAAA---A----ATATATATA-TATTTATCAATCAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAA-TATAAA----AA-TTCT---TG-ATTTCCAAATAA-T----TGTC-T--G-G--CGC----CTCATCAGGATATTTAAAAA--------TA-A-TT-GC--AATTC--TTTTAGTGCATG--CC-CTCT--TTCT--TTTACCC--CCACTGCTCTGG-GGGGAACTTG---CA-C-----A-GATAC----AAATCTC-CA-AC-AAAATT---AATA--ACA-TTGTG-CAA-GTTCACATTGGT-AAAATACCAAATGAACA-GCGACGTTGGTATATT-----TATC---ATAG-------------GAATATTgt
gi|11 : tTTTTTTTCTATT---GTAG-------T----AGA--------------TA-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCT-GATAACTGGAGTTGTGGAT-GATTAAGTATACT----------AGTA-----CTC-TATT-C-TG--CTGTGTAATTCT---TTGAC
gi|11 : atgaaaccagcttagcgcttttcagtactttgaTGCTGCTGT--ACC---AAGTATTATC--A--gtgctgctgtaccaagtattatcattgtgcaaatgccaaatcataaac
gi|11 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgTTA------------T-CATTGTG-------CA--AATGCCAAATC---AT-----AAAttgtgcaaatgccaaatcataaac
gi|12 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaAA-TG---TCTC-T--GC----------CTCATCAG--TGTT--AAAAATACAATGTA-A-TT-GC--AATTC--TTTT-GT-CATG-TCC-CTCT--TTCT--TTTA--CATGCA-TGCTT-----GGGAACTTG---CA-C-----AGTATATCA--AAATCTC-CA-AC-AAAT-T---AT-A--ACACTGTTG-CAAGGTTCACATTGGT-AAAATc
gi|14 : TTT-------GACG-GAGATAAT---GGCT-G-AC-AATTCTT-CCGC-----GATTT--T-----GAT-TGGCTGTGA----G--AAGATG-GTAA-C-TGCGTCACCCC-C-GACA--TCATGGAAG
gi|15 : tgA-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCT-AATAACTGAAGTTGATGAT-GATAC------------------AGTA---TGCTC-TGTTGA-TGAATAGTGTGGTTaga
gi|2 : --AGG-GTTGATCT-AATAACTGGAGT-GATGATTGATTCG-----C-----------AGTA---TGCTC-TGTTGA-TGAAGAGTGTGAT--TC--T-------------------------CTTGACTAA-AA--TGCTGCTGT--ACC---AAGTATTATT--ATTAATGAATC-GGTA----AG-A----AAC---A------ACA--GA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATAT---CTTTTAAAA-AT-ATCATC-----ATATTA-GCA-CA-AA--C-AT-A--CCTTTGTATTTAGAAGCA---TAAAAATGAGA---GGGACTC-ATAAAT--AAAT----CGGG-CC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TTA--TAGAG----GGG--ACAATA-A---TTCTA-CC--TTCAC-AA-C---C---TC--A--GCTT---C-AACA-TTATTTGAAAA-TGGATATTTTCTTTG-TTG--T--CA-TTT---TAGG-A-------CC---CCCCC---CCCC-CCCC---CCCCA
gi|2 : AATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA--AG-----AA--AT-GCTTTA--GA-TATGCTTAATGGAATTGTT-T--TGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT--------CGTAATTTAAATTA----CAAACTA----TGTGTAGATTATT---ATTTCTTTATTGTAT-------AAACATGTAG----CCTGATGCAT-----ACACAAT--------------TAGACACATCACA--TCT-TGTACAAAATTTAGGTTAC-ATTG---------ACATTTA-TTTATT-A--TCA-CA-GC-CCAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTC---ACG-T----AGATCT-TAGATCTTATACA-CATGTATACACATACATAATGTGCCCC---CCCCCCC--TTGTTTTT------TC-----A----ACCATAACACA-AT-TTTTAGGAATCTCGGTC-ATC---TCAAACTTACAG----CAGAAACTGGCCACGCAAAGCGACTTATGACG-TGTGAAGGTGGG----------GGAAA-------------T-TAT-TG-TT---TCATTATTTAC-TTTTCAG-T--GGT-TGAAGGGT-GCGTGTGT---T-------GG--------GAGGGGGGGGGGTGCATTT---ATAAG-ACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGTA-CT-ATTGAC-TAATTGA--A-CTGTCACAGTTAAAATTACATT--CAATTGATTGATAAAAC--AACTTAA----TTTGAA-ACA-TGTCGATCT-----GTTTTTTTCTCCTCTTACGTTGAATATTG---CACTG-CAATGCTTGAATGGGCC-TA-GGC--T-ACAGCACGT---AAACAAT----T-TTTTC--TGT-GAA--AA-T--TG-TTCT-G---AATGG-GGTGTATCT-CACTC-CT-ACTATCC-TTCTG--GG-T-C-----CGT---GTGT-CAC-T-T---ACAT-TT-CCC-CA---TGC-GCAG-GTCTTTCAC---TTTTC-AAG-GCGAA--TTCAAAGCA--ATC----TCATTgtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|3 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaACATTAATT---AGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAAG------CATTCC---TGTGGGGTCACAATGGAACTG-AATC----TAACTCCAG--GACCCAAGATACATTTAACCGTCAATATTTAGGGTCAAA---ACGTCA-------ACTATTTATCATTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA--AATTATAAGCAACAA-TTTCATGTG-ATTCCAAAATAACTG---TCTC-TGGGCGT-CGC----CTCATCA---TGTT--AAAA--------TA-ATTT-GCGAAATTC--TTTT-GT--ATG-TCC-CTCC--GTCT--TTTA------CA-TATT------GGGAACTTGAGACACC-----A-TATATCA--AAATCTCTCA-AC-AACC-T---A--AGTACA-GTTTG-CAAGGTTC----------AAAT------CGAGCCT-------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCT----AGAATA-TGTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGATGATGGATTT-GT---CTGTAGAATCGTAATA---TGCTCTTGGTGATTGAAGAGTGTGGTTCTCTGTTGA-TACTAAAATGTGCCCCATGTCCAAGAGTA--------------TTAATC---AAAC-----------AATGAATC-TGTA----AACA----AAGCGCAATCGCTACAGGGAGATAACTCTTTA------------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGATG---ACTTAAAT---T---TTTTTTTAACAT-CTTGTCATGTAATATTATGTACCACAACCC-CTAAC-CCATTGTATTTAGAAGCACCTAACAAAAATGAA-GGGGACTCGATAAATAGAAATTCGACGGGTTT--AATGA-TCA---GGGATGCAT--TTTCG----TGGA-----TCTATTAGACTTCTGGG--ACAATACA----TTCC-CCAGTTCACTAA-CCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAA-TGGAT-CTTCCTTCATTTG--T--CATTTT---TAGG-ATT-----TTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgTATA-A-GGACAA-GTATCCCCC---CCCCTTC--T--TTTTT------Tac
gi|4 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagattACATTAATTGA-ATAGG-----CAAACTTT-AATT-TCATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGTA----GACCCTAGTAGTTAAATCAAGCCAAACTTTA----AAGAGAT--GATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACT-CAATTGA--TAATAGATAATGA---GTCAATA--TAGG--CAAAGGCA----A-------A-TA-TTATCA-TCAA-ATTGATCCAATGG-----CATAGTGTT-GA--AATTATAAA----AA-TTCTC--TGAATTCCAAAATAAGTGGTTTCTCGT--GCGTTTGCTTCTTTCATCAG---GTT--GAAA--------TACA-TTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTA-----GCA-TACTT--GAAGAAAACTTG---CA-CCTCTTA-TA-ATCAAGAAATCTC-CAGACAAAAG-TACAA--A--ACA-TGTTACCAAGGTGCAATTTGGTAAAAATATCAAAtttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttacattaattgaataggcaaactttaatttcattttatttattacaacagacatattttaaaaattacagtagaccctagtagttaaatcaagccaaactttaaagagatgattgggcatttcctttgcgggatcacaatggaactggaatcgtaacaactcaattgataatagataatgagtcaatataggcaaaggcaaatattatcatcaaattgatccaatggcatagtgttgaaattataaaaattctctgaattccaaaataagtggtttctcgtgcgtttgcttctttcatcaggttgaaatacattggcaaattctgttttgtcatgatccgctccaaatcttatttagcatacttgaagaaaacttgcacctcttataatcaagaaatctccagacaaaagtacaaaacatgttaccaaggtgcaatttggtaaaaatatcaaa
gi|5 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttTTATT-TGGTCA-CAGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT----ACGAT----AG---ACTATATCTTA-ATA--ACATATA-A-GTACAT-ACTTACCCC---C------------TTGTAAAAAACC-----AGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCAT-GCGTCAAA---AACT----TACAAACAGAAAACGCGGCCCGCCGAAAG-CGACTTAATGAAAGGTGAATGGTAGGGAAA-------TTAAAGTGCATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGT---T-------GGCGGTG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCTCA--GTCAGAAAACTTTGGCATGTA-CTAATTATCTTAATAGCAC--CTGTCACAGTT-AAATTAACTTTCTATTTGATTGATAAAAC-AAACTT---ACTTCTGAACACGT--TCGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCAACACTGCCAAGG-------GGGCCGTACAGC--T-ACAGCACGTAAGAAACAATTA--T-TTTTCTGTGT-GAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTA-GCTTTCTG--GATTAC-----CGTGTGGTGTCCAC-TGTTTAACAT-TT-CCC-CATTTTGCTGCAG-TGTTTGCACAA-TTTTCTGAGTGCGAAATTTCAAAGCAATCT-----TCGTTAAAAAAACATCC----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-G-TTT-------GACG-GAGGTCATGTAGGC--G-ACAAATATTCGCCG------GATTC--T-----GAT-TGCTT-TGTTGCGG--AAGATG-GTAA-CGTCCACCTCCCCAT-GACGACACGTGGAAG
gi|6 : GTTAGCCCTCAAGTACTATCCAA--AATGAATCATGTACAGAAACACCAGAAT---A------ACGAGAA-TT-ATTTTTTATACAATCCTTTAA-TGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA---TATATCTTATAAAAAT-ATCATC-----ATATTATGCACCA-AA--A-ACAATACCTTTGAATT-AGAAATA---AAAAAGAGAG-----GGACTCCATAAAT-TAAAT----CGGG-GCCAAAT-AATCAAAGGAGATGCAAGAT---GTAATTAGAAAATACA---TAGAA----GGGGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAAC-AAAA-TAA-TTAAAAAAT---T-CTTTAT--G-TTGGATAACA-ATTATATAGG-AAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCgc
gi|6 : CCTGATGCAT-----ACACAAT-GTTACACAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|7 : gttagccctcaagtactatccaaaatgaatcatgtacagaaacaccagaataacgagaattattttttatacaatcctttaatgctatagagagatcaaatgccacatccagattgagacaaagccaattgcaacatttaggaaaatgtaacaaatatatcttataaaaatatcatcatattatgcaccaaaaacaatacctttgaattagaaataaaaaagagagggactccataaattaaatcggggccaaataatcaaaggagatgcaagatgtaattagaaaatacatagaaggggaacaataaaaaatatctaccttcaccaaaccatatcaaggcttcaacaaaataattaaaaaattctttatgttggataacaattatataggaaatactatacgacccccaaaccccaccccacaccccacccccccccaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggCTGCAACAT-CATATGTATACAACAAATGGACCCTAA-TAATTTGGCACAC-AG-----AACAAT-GCTTTA--GATTATGCTTAATAG-ATTGTTATAGTGTAATAGA---TGCATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAACC-TACTT---AAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTCTC--TC---TCACACACACTCATTCAGGCCCCCTGGTGTAT-----ACAC-ATAGTAACACATTGTATGTATACATCACA--TC--TGTACAATA-TTAG----CGATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAGAAAG---A-TAGATCTTA-GCATTACACATA----------ATGTCCCCC---CCCCCTTTGT--TTTTT------TC-----A----ACCA-AACACACAT-TTTGTGGAATTCTCAGG-ATCATCTCAAA---ACTTACAGCAGAAACTGGCCACGC---CCAAAGC-GGACC-CTTAACGAAGCC----------GTAAC-------T----AT-CAT-TG-TT---TCATTATTTAC-TTTTCA-TT--GGTATAGAAGGT-GCGTGTAT---TTGGGGGAGG--ATGCGTGGaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|8 : -TGGTATTTTTTTTCTATT---GTAG-------CCGGCAGAATATTGTTTTTGG-TA-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCT-AATAACTGGAGTTGATGAT-GATTTAGT---CTG---------AGTAATATGCTC-TGTTGA-TG---------------------------AAGAGTGT---GGTTCTTTGACTAA-AA-ATGCTGCTGT--ACC---AAGTATGATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAG-A-AT-ATCTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT---TTT---T---TTTTTTAAATAT-ATCATC-----ATATTATGTA-CA-AA--C-ATAA--CCATTGTATTTAGAAGCA---TAAAAAAATGA---GGGACTC-ATAAAT-GAAAT----TGGG-TT--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGAT----GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TCATA--GCTTC--
gi|9 : cctGCACGTA--AACCAATCAACTACTTTC--TGTTGACACTT-TCCTGCTTCT-GAACAATGGAGGTATATCTC-ACTC-C--ACTATCCTTTCTGCTGG-TATGTAGACAT---GTGTC-AC-T-T---ACATATTCCCCTCA--TTGC-GCAGTGGTCTTCACAAATTTTC-AA--GCGAA--T-CAAAGCA--ATCACAATACTTCAAAA--CTCCTGCATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCAT---GGC--GGAC-AATTCTC-CGGCCCCCCGACTT--CCCCTGGAGGCGGCG-TGC----AGCATGATGCGTAA-C-TCCGCCTCCCC-CTGACG--ACGTGGAAGCttcttttgtttatgtttaggattct
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444444 1 11 222222 11 11 222 8888888888888888888888888888888888888888 11 2222 33333333 222 2222 2222 3333 222 222 11 555555555555555555 111 1 1 3333333 1 1 1 2222 222 1 2 111 2222222222222 111 11 22222222 1 11 11 111 11 222 444444444 111 22222 11 1 333333333 11 55555555 111 444444444444 6666666666666666 111 3333333333333333333333333333333333333333333333333 11 111 11111 1111 1111 2222222222 33333333333333 2222222 111 11111 11 11 111 1111 11 11 22222222222 22222 1 111111111 1111 222 11 1111 11111 1 111 222222222 22222222222 222222 11 111 11 11 1111111 11111 111 1 1 1 111 1111 11111 1 111 222222222222 111 1 111 22222 1 1 11 2222 22222 11 2222 6666666666666 11 1 11 22 2222 444 5555555555 1 1 1 1 33333333333333333 11111 11 22 66666666666 222222 22222 33333333333333333333 11 22 1 22222 44444444 11 2222 1 1 5555555555555555555555555 1 111 1 44444444 1 11 111111111 111 22 444444444444444444 1 1 1111 2222 33333333333 111 1 777777777777777777777777777777 1 1 111 1 222 1 1 5555555555555555555 44444444 1 11 1 1 1 2 2 333333 22 22 33333 1 111 44444 6666666 333 222 1 222 111 111111 11 1 22222222 1 1 111 1 1 11 11 1 22222 111 1111111 1 1 1 222 1 1 11 1 22 111 11 333333333 333333 1 1 1 1 3333333 1 22222222 1 2222222 3333 11 1 22222222 1 1 1 111 11
lowQualScore : 88 1 000000000000000 5 88 22 999999 88 66 111 9999999999999999999999999999999999999999 88 4444 55555555 333 0 6 7 8888 3333 2222 6 7 333 888 33 888888888888888888 3 111 0 0 5555555 0 0 0 3 1111 0 777 0 4 444 8 9999999999999 111 11 99999999 8 6 99 11 8 8 88 8 222 11 666 222222222 3 444 88888 88 0 11 8 8 6 1 555555555 8 8 66 8 44 0 44444444 0 444 666666666666 0 5 8 8 0 8 8 99 6 6 6 6 0000000000000000 111 6 6 7777777777777777777777777777777777777777777777777 88 111 1 33333 8 7777 7777 8888888888 555 8 8 66666666666666 1111111 99 111 66666 0 8 11 11 8 444 8 3333 1 11 11 33333333333 3 8 00000 0 0 8 555555555 8 1 0 0 5555 1 1 444 8 8 33 7777 44444 6 444 555555555 3 55555555555 111111 11 444 5 0 8 11 11 8888888 33333 777 0 0 0 3 0 111 1111 88888 0 777 888888888888 777 0 777 1 66666 5 1 5 88 4444 1 77777 88 5555 6 7 7 0000000000000 88 3 88 00 7 2222 6 222 7 8888888888 3 3 3 5 77777777777777777 33333 55 7 00 00000000000 1 888888 55555 99999999999999999999 7 88 00 2 88888 00000000 99 5555 0 2 5 4444444444444444444444444 99 2 0 7 777 0 99999999 0 0 66 8 555555555 1 444 1 22 888888888888888888 0 2 0 3333 2222 11111111111 666 777 5 0 3 777777777777777777777777777777 0 5 777 0 3 1 111 0 0 3333333333333333333 22222222 6 3 88 0 3 3 3 3 3 111111 7 7 22 00 11111 3 888 55555 1111111 000 222 6 3 77 333 777 888888 33 0 33333333 0 0 000 0 3 2 99 0 33 9 3 33 0 3 55555 777 55 9999999 0 5 0 999 0 0 1 33 0 55 777 1 22 444444444 111111 2 0 3 7 3 3 7 2222222 0 11111111 0 9999999 2 5555 33 0 99999999 0 0 0 888 33
lowQualScore : .. . ............... . .. .. ...... .. .. ... ........................................ .. .... ........ ... . . . .... .... .... . . ... ... .. .................. . ... . . ....... . . . . .... . ... . . ... . ............. ... .. ........ . . .. .. . . .. . ... .. ... ......... . ... ..... .. . .. . . . . ......... . . .. . .. . ........ . ... ............ . . . . . . . .. . . . . ................ ... . . ................................................. .. ... . ..... . .... .... .......... ... . . .............. ....... .. ... ..... . . .. .. . ... . .... . .. .. ........... . . ..... . . . ......... . . . . .... . . ... . . .. .... ..... . ... ......... . ........... ...... .. ... . . . .. .. ....... ..... ... . . . . . ... .... ..... . ... ............ ... . ... . ..... . . . .. .... . ..... .. .... . . . ............. .. . .. .. . .... . ... . .......... . . . . ................. ..... .. . .. ........... . ...... ..... .................... . .. .. . ..... ........ .. .... . . . ......................... .. . . . ... . ........ . . .. . ......... . ... . .. .................. . . . .... .... ........... ... ... . . . .............................. . . ... . . . ... . . ................... ........ . . .. . . . . . . ...... . . .. .. ..... . ... ..... ....... ... ... . . .. ... ... ...... .. . ........ . . ... . . . .. . .. . . .. . . ..... ... .. ....... . . . ... . . . .. . .. ... . .. ......... ...... . . . . . . . ....... . ........ . ....... . .... .. . ........ . . . ... ..
lowQualScore : 00 0 555555555555555 0 55 00 555555 00 55 555 0000000000000000000000000000000000000000 00 0000 00000000 333 7 7 3 3333 0000 7777 7 3 333 000 88 000000000000000000 2 000 0 0 0000000 0 0 0 2 2222 2 555 0 0 000 0 8888888888888 888 00 00000000 0 0 00 00 0 0 88 0 000 00 000 000000000 2 000 00000 66 8 00 0 0 0 0 888888888 0 0 00 0 00 7 77777777 8 000 888888888888 8 6 0 0 8 0 0 22 7 7 7 7 3333333333333333 777 7 7 9999999999999999999999999999999999999999999999999 55 777 7 33333 0 0000 0000 0000000000 222 0 0 22222222222222 7777777 22 777 77777 8 0 00 00 0 000 0 0000 0 00 22 66666666666 2 0 00000 8 0 0 666666666 0 4 8 8 4444 0 4 888 0 0 00 0000 22222 0 000 000000000 2 22222222222 666666 00 000 0 8 0 00 88 0000000 00000 444 0 0 0 2 2 000 5555 55555 0 555 888888888888 555 0 555 0 00000 0 0 5 00 0000 0 00000 00 0000 7 3 3 3333333333333 33 3 33 77 3 7777 7 000 3 3333333333 3 3 3 0 00000000000000000 77777 77 3 00 88888888888 0 888888 00000 22222222222222222222 3 33 77 3 33333 77777777 33 0000 0 5 5 5555555555555555555555555 00 5 0 0 555 0 88888888 2 0 55 0 888888888 0 000 4 00 222222222222222222 0 5 0 0000 8888 88888888888 888 888 8 0 0 888888888888888888888888888888 0 5 555 0 2 0 555 0 0 5555555555555555555 77777777 7 3 33 7 3 3 3 7 7 777777 3 3 33 77 33333 3 333 77777 7777777 777 000 7 3 33 333 000 888888 88 0 55555555 0 0 222 0 2 5 00 0 22 2 2 88 0 2 00000 555 00 5555555 0 0 0 222 0 0 0 22 0 00 000 0 55 999999999 333333 0 7 3 3 3 3 3 5555555 0 55555555 0 0000000 5 0000 88 0 22222222 0 0 0 000 88
consensus : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A-NGAC--A-AGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-TG---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT--T---G-GGGGAACTTG---CACC----A-TATATCA--AAATCTC-CA-ACAAAANT---A--A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCGGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTCT--TGACTACT--AGTGTG-----NTTCCTTGACTAA-AA-GTGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TA--TTTTTTAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACT-C-ATAAAT-GAAAT----CGGG-TC--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATC---TAGA----NGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGA-T-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGAT---GCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-CGTAA--TT---ATT----ATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCA--TANTCATNCAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGC-ATAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGT-ACT-ATTATC-TAATAGCACA-CTGTCACAGTTAAAATTACATTT-CATTTGATTGATAAAAC-AAACTT-AC--TTTTGAA-ACGTTGTCGATCTT----GTTTTTCTCT-------CGTTGAATATTGCA--GCACTGCN--AATGGGGCC-TACGGC---TACAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCAC-AATTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TTN--AAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GAC-AATTCT-----C-CCGCGATTTC---TG--ATTGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
Reference ( family-2541 ) : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTCCA-GGACC-A-AGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-TG---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT--T---G-GGGGAACTTG---CAC-----A-TATATCA--AAATCTC-CA-AC-AAANT---A--A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCAGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTCT--TGACTACTAAAGNGTGCCCCGNNTCCTTGACTAA-AA-ATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-T---TTTTTTAAACAT-ATCATC-----ATATTATGCACCA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACT-C-ATAAAT-GAAAT----CGGG-TC--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATC---TAGA----NGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGA-T-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TNTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGAT--TGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGATCCGTAA--TT---ATT----ATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATC-----TANTCATNCAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTTAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCAATAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGT-ACTAATTATCTTAATAGCACA-CTGTCACAGTTAAAATTACATTTCCATTTGATTGATAAAAC-AAACTTAAC--TTTTGAA-ACGTTGTCGATCTT---GGTTTTTCTCTC------CGTTGAATATTGCA--ACACTGCC--AATGGGGCC-TACGGC---TACAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCAC-AATTTTC-AAG-GCGAA--TTCAAAGCANTC-TCG----TTNAAAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GAC-AATTCT-----C-CCGCGATTT----TG--ATTGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
gi|1 : GCATTCC---TGTGGGGTCACAATGGAACTGGA-TC----TAACTC-A-AGAC--A-AGATACATTGA---GTCAATAT--AGG--CAAA---G----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AATATA-AAA----AATTAT---TG-ATTCCAAAATAA-TG---TCTC-TG--CG-T-GC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC----ATACT--T---G-GG--AACTTG---CAC-----A-GATATCA--AAATCTC-CA-AC-AAAGT---A------CA-TGTTG-CAAGGTTCA-ATCGGT-AAAATATCAAATAAGCCTTCAAA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCAGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCT-T--TGACTACNNNNNNNNNNNNNNNNNNNNNNNNNAACAACATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAAGA-AT-ATTTTTTA------------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT-T---TTTTTAAAACATAATCATC-----ATATTATGCACCA-AA--CTATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGAGGACT-C-ATAAAT-GAAAT----TGGA-TC--AAT-ATCA---GGGATGCG----GT---GCTGG-----ATC---TAG------GGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAATGAA-T-CTTTCTTTG-TTG--T--CA-TTT---TAGGCA-----TCTTCGACCCCC---CCCC-CCCC---CCCCCCCCCCCCC
gi|1 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctaAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAA-A-----ATATGTA------ATTG-TTGTAAAAAGTTT----TATAAGTACACAA--ATTGCCCTAATGAT----TTTAATGAAAATACT-T--T-----AGAT-----ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGATCCATAA--TT---ATT----ATCACCATACTA-TGTTGTAC--AT--ATG-ATTTTCGTTA---------GTCATACAGGCC---TGATGCATGCAATACACTATAA-GACACATT-TTAT---CACATC-CAGCTCTATGTACAAAATTCAG-ATT-CATTGCAACACGCCACATTTACTTTATT-T--TCAC-AGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAC---C----TAAATCTTA-ATAC-ATATATA-A-GTACCT-CTCTCTCTCTTCCCCCCCCT--TTTTT------TTTTTTAA----ACCA-AATACACAT-TTTTTGGAATCCCNNNN-NNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN----------NNNNNNNNNNTAT----GT-CAT-TGTTT---TCATCATTTAC-GTT-CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGT-------GT--GTGTGTGGGGGGGGGGGGTGTATGTGC-ATAAGGACGTGCTAT-TCT--CAGTCAGAAA-CTATG-CATGTAACT-ATTATC-TAATA-CACAGCTGTCACAGTT-AAATTACATTT-CATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTT----GTTTTTCTCT-------CGTTGTATATTGCA----ACTGCA--AATGGGGCC-TACAGCTATTACAGCACGCA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GA-TAC-----CGT---GTGTCCATGT-T---ACAT-TTCCCC-CA---TGC-GCAG-GTTTTTCAC-AATTTTC-AA--GCGAA--TTCAAAGCATT--TCG----TTT--AAAACATCTGCAA-CTAAACACCTCCACG-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGGAC-AATTCT-----C-CCGCGATTTCG--TG--ATTGGCT-TGC----G--AAGATG-GTAACC-TCCACCTCCCC-T-GACG--ACATGGAAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcttgcagtcaattgaatatgtgcatgtgtttgtgcgtctggcaggtaacattgtcaaaagagatcaaaaccctgcaaaatatgtaattgttgtaaaaagttttataagtacacaaattgccctaatgattttaatgaaaatactttagatatgccatagcaaaaataatgtaaaagtcgatctgatccataattattatcaccatactatgttgtacatatgattttcgttagtcatacaggcctgatgcatgcaatacactataagacacattttatcacatccagctctatgtacaaaattcagattcattgcaacacgccacatttactttattttcacagacatcagaagtatgtaataggaggttatcgtatacgttacgtacctaaatcttaatacatatataagtacctctctctctcttccccccccttttttttttttaaaccaaatacacattttttggaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtcattgttttcatcatttacgttcaatttaggttgaagggtgcgtgtgtgtgtgtgtgtgtggggggggggggtgtatgtgcataaggacgtgctattctcagtcagaaactatgcatgtaactattatctaatacacagctgtcacagttaaattacatttcatttgattgataaaacaaaacttcacatttttgaaacgttatcgatcttgtttttctctcgttgtatattgcaactgcaaatggggcctacagctattacagcacgcaaaacaattatttttctgtgacttttgttctgaaaatggggtaatcttcactcctactagcctttctggataccgtgtgtccatgttacatttcccccatgcgcaggtttttcacaattttcaagcgaattcaaagcatttcgtttaaaacatctgcaactaaacacctccacgcatgtgcaccatcggtgttttgacggaggtcatgggccggacaattctcccgcgatttcgtgattggcttgcgaagatggtaacctccacctcccctgacgacatggaagcgt
gi|10 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctagcattcctgtggggtcacaatggaactggatctaactcaagacaagatacattgagtcaatataggcaaagaatatttatcatcaaattgatcaatgcatagtgttgaaatataaaaaattattgattccaaaataatgtctctgcgtgcctcatcagtgttaaaataattgcaattcttttgtcatgtccctccttcttttacatacttgggaacttgcacagatatcaaaatctccaacaaagtacatgttgcaaggttcaatcggtaaaatatcaaataagccttcaaagtggtattttttttctattgtagtagaatattgtttttggtaaaaagggatagcttgttgatagggttgatctaataactggagttgatgatgattcagtctgagtatgctctgttgatgaagagtgtggttctttgactacnnnnnnnnnnnnnnnnnnnnnnnnnaacaacatgctgctgttaaccaagtattatcaaatgaatctgtaaacaaagaacaaagaatattttttaagtattgtgcaaatgccaaatcattaatggacaaagcatgcacattaagtaagatacaacaatttttttaaaacataatcatcatattatgcaccaaactataaccattgtatttagaagcaaaaaaaaaaaaatgaggactcataaatgaaattggatcaatatcagggatgcggtgctggatctaggggacaatacatttccccttcactaacctcagctttcaaacattattaaaaatgaatctttctttgttgtcattttaggcatcttcgaccccccccccccccccccccccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGG--CAAA---A----ATATATATA-TATTTATCAAT-CAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAA-TATAAA----AATTCT---TG-ATTTCCAAATAATTG---TCT-------G-GCGC----CTCATCAGGATATTTAAAAA--------TA-ATT-GC--AATTC--TTTTAGTGCATG--CC-CTCT--TTCT--TTTAC--CCCCACTGCTCTGG-GGGGAACTTG---CAC-----A-GATAC----AAATCTC-CA-ACAAAATT---AATA--ACA-TTGTG-CAA-GTTCACATTGGT-AAAATACCAAATGAACAGC--GACGTTGGTATATT-----TATC---ATAG-------------GAATATTgt
gi|11 : tTTTTTTTCTATT---GTAG-------T----AGA-------------T-A-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCTGA-TAACTGGAGTTGTGGAT-G-ATT------A---------AGTA---TACT--------------AGTAC---TCTAT--T--CTGCT---GTGTA-----ATTCTTTGAC-------GTGCTGCTGT--ACC---AAGTATTATC--A--
gi|11 : atgaaaccagcttagcgcttttcagtactttgaTTA------------T-CATTGTG-------CA--AATGCCAAATC---AT-----AAAttgtgcaaatgccaaatcataaac
gi|12 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaAA-TG---TCTC-TG--C----------CTCATCAG--TGTT--AAAAATACAATGTA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCT--TTCT--TTTACATGCATGCT--T------GGGAACTTG---CAC-----AGTATATCA--AAATCTC-CA-AC-AAATT---AT-A--ACACTGTTG-CAAGGTTCACATTGGT-AAAATc
gi|14 : TTT-------GACG-GAGATAATG--G-CT-GAC-AATTCT-----T-CCGCGATTT----TG--ATTGGCTGTGA----G--AAGATG-GTAA-C-TGCGTCACCCC-C-GACA--TCATGGAAG
gi|15 : tg-A-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCTAA-TAACTGAAGTTGATGAT-G-ATAC---------------AGTA---TGCTCT-GTTGAT-GAATAGTGTGGTTaga
gi|2 : --AGG-GTTGATCTAA-TAACTGGAGT-GATGATTG-ATTCG--C-----------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGAT--TCT---------------------------CTTGACTAA-AA--TGCTGCTGT--ACC---AAGTATTATT--ATTAATGAATC-GGTA----AG-A----AAC---A------ACA--GA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATA--TCTTTTAAAAAT-ATCATC-----ATATTA-GCA-CA-AA--C-AT---A-CCTTTGTATTTAGAAGCA---TAAAAATGAGA---GGGACT-C-ATAAAT--AAAT----CGGG-CC--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATTA--TAGA----GGGG--ACAAT---A-ATTCTA-CC--TTCAC--AAC---C---TC--A--GCTT---C-AACA-TTATTTGAAAATGGA-TATTTTCTTTG-TTG--T--CA-TTT---TAGG-A-----CC-----CCCCC---CCCC-CCCC---CCCCA
gi|2 : AATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA-------AGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-CGTAA--TTTAAATT----A----CAAACTA-T---GTGTAGATTATT---ATTTCTTTATTGTA--TAAACATGTAG---CC-TGATGCAT-----ACACAA-----------T-T-A-G-ACACATCACA--TCT-TGTACAAAATTTAG-GTTACATTG---------ACATTTA-TTTATT-A--TCAC-A-GC-CCAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTCAC---G-TAGATCT----TAGATCTTATACAC-ATGTATACACATACATAATGTGCCCC---CCCCCCCTTGTTTTT------TC-----A----ACCATAACACA-AT-TTTTAGGAATCTCGGTC-ATC---TCAAACTTACAG----CAGAAACTGGCCACGCAAAGCGACTTATGACG-TGTGAAGGTGGG----------GGAA-------A------T-TAT-TG-TT---TCATTATTTAC-TTTTCAGT---GGT-TGAAGGGT-GCGTGTGT---T-------GG--------GAGGGGGGGGGGTGCAT-TT--ATAA-GACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGT-ACT-ATTGAC-TAATTG-A-A-CTGTCACAGTTAAAATTACATT--CAATTGATTGATAAAAC--AACTTAA----TTTGAA-ACA-TGTCGATCT-----GTTTTTTTCTCCTCTTACGTTGAATATTGCACTGCAATGCTTGAAT-GGGCC-TA-GGC---TACAGCACGT---AAACAAT----T-TTTTC--TGT-GAA--AA-T--TG-TTCT-G---AATGG-GGTGTATCT-CACTC-CT-ACTATCC-TTCTG--GG-T-C-----CGT---GTGT-CAC-T-T---ACAT-TT-CCC-CA---TGC-GCAG-GTCTTTCAC---TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCA----TTgtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|3 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaACATTAATT--AGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAAG------CATTCC---TGTGGGGTCACAATGGAACTG-AATC----TAACTCCA-GGACCCA-AGATACATTTAACCGTCAATATTTAGGGTCAAA---ACGTCA-------ACTATTTATCA-TTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA-AAT-TATAAGCAACAATTTCATGTG-ATTCCAAAATAACTG---TCTC-TGGGCG-TCGC----CTCATCA---TGTT--AAAA--------TA-ATTTGCGAAATTC--TTTT-GT--ATG-TCC-CTCC--GTCT--TTTAC----ATATT---------GGGAACTTGAGACACC----A-TATATCA--AAATCTCTCA-AC-AACCT---A--AGTACA-GTTTG-CAAGGTTCA----------AAT------CGAGCCT--------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCT----AGAATAT-GTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGATGAT-GGATTT-GTCTGTAGAATCGTAATA---TGCTCTTGGTGATTGAAGAGTGTGGTTCTCTGTTGA-TACTAAAATGTGCCCCATGTCC------AA-GA-GTA------TTAATC---AAACA-----------ATGAATC-TGTA----AACA----AAGCGCAATCGCTACAGGGAGATAACTCTTTA------------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGATG---ACTTAAAT-T---TTTTTTTAACAT-CTTGTCATGTAATATTATGTACCACAACCC-CTA--ACCCATTGTATTTAGAAGCACCTAACAAAAATGAA-GGGGACT-CGATAAATAGAAATTCGACGGGTTT--AATGATCA---GGGATGCA----TTTTCG-TGG-----ATCTATTAGACTTCTGGG--ACAAT---ACA-TTCC-CCAGTTCACT-AACCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAATGGA-T-CTTCCTTCATTTG--T--CATTTT---TAGG-A-----TTTTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgTATA-A-GGACAA-GTATCCCCC---CCCCTTCT--TTTTT------Tac
gi|4 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagattACATTAATTGAATAGG-----CAAACTTT-AATT-TCATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGT----AGACCCTAGTAGTTAAATCAAGCCAAACTT----TAAAGAGAT--GATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACTCAATTGATA-ATAGATA-A-TGA---GTCAATA-T-AGG--CAAAGGCA----A-------A-TA-TTATCA-T-CAA-ATTGATCCAATGG-----CATAGTGTT-GA-AAT-TATAAA----AATTCTC--TGAATTCCAAAATAAGTGGTTTCTCGTG--CGTTTGCTTCTTTCATCAG---GTT--GAAA--------TACATTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTA---GCATACT--T---GAAGAAAACTTG---CACCTCTTA-TA-ATCAAGAAATCTC-CAGACAAAAGTACAA--A--ACA-TGTTACCAAGGTGCAATTTGGTAAAAATATCAAAtttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttacattaattgaataggcaaactttaatttcattttatttattacaacagacatattttaaaaattacagtagaccctagtagttaaatcaagccaaactttaaagagatgattgggcatttcctttgcgggatcacaatggaactggaatcgtaacaactcaattgataatagataatgagtcaatataggcaaaggcaaatattatcatcaaattgatccaatggcatagtgttgaaattataaaaattctctgaattccaaaataagtggtttctcgtgcgtttgcttctttcatcaggttgaaatacattggcaaattctgttttgtcatgatccgctccaaatcttatttagcatacttgaagaaaacttgcacctcttataatcaagaaatctccagacaaaagtacaaaacatgttaccaaggtgcaatttggtaaaaatatcaaa
gi|5 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttTTATT-TGGTCAC-AGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT-AC---GATAG---AC---TATATCTTA-ATA--ACATATA-A-GTACAT-ACTTACCCC---C----------TTGTAAAAAACC-----AGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCAT-GCGTCAAA---AACT----TACAAACAGAAAACGCGGCCCGCCGAAAG-CGACTTAATGAAAGGTGAATGGTAGGGAA-------ATTAAAGTGCATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGT---T-------GGCGGTG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCT--CAGTCAGAAAACTTTGGCATGT-ACTAATTATCTTAATAGCAC--CTGTCACAGTTAAA-TTAACTTTCTATTTGATTGATAAAAC-AAACTT-AC--TTCTGAACACGT--TCGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCA--ACACTGCC--AAGGGGGCCGTACAGC---TACAGCACGTAAGAAACAATTA--T-TTTTCTGTGT-GAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTA-GCTTTCTG--GATTAC-----CGTGTGGTGTCCAC-TGTTTAACAT-TT-CCC-CATTTTGCTGCAG-TGTTTGCAC-AATTTTCTGAGTGCGAAATTTCAAAGCAATCTTCG----TTAAAAAAACATCC-----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-G-TTT-------GACG-GAGGTCATGTAGG-C-GACAAATATT-----CGCCG-GATTC----TG--ATTGCTT-TGTTGCGG--AAGATG-GTAA-CGTCCACCTCCCCAT-GACGACACGTGGAAG
gi|6 : GTTAGCCCTCAAGTACTATCCAA--AATGAATCATGTACAGAAACACCAGAAT---A------ACGAGAA-TT-ATTTTTTATACAATCCTTTAA-TGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA-TATATCTTATAAAAAT-ATCATC-----ATATTATGCACCA-AA--A-ACAATA-CCTTTG-AATTAG----A---AATAAAAAAGAG-AGGGACTCC-ATAAAT-TAAAT----CGGG-GCCAAATAATCAAAGGAGATGCAAGATGTA--ATTAGAAAATACA---TAGA----AGGGGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAAC-AAAA-TAA-TTAAAAA---ATT-CTTTAT--G-TTGGATAACA-ATTATATAGG-AAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCgc
gi|6 : CTTTATG-----TAT--ATTTGG---CC-TGATGCAT-----ACACAAT-GTTACACAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|7 : gttagccctcaagtactatccaaaatgaatcatgtacagaaacaccagaataacgagaattattttttatacaatcctttaatgctatagagagatcaaatgccacatccagattgagacaaagccaattgcaacatttaggaaaatgtaacaaatatatcttataaaaatatcatcatattatgcaccaaaaacaatacctttgaattagaaataaaaaagagagggactccataaattaaatcggggccaaataatcaaaggagatgcaagatgtaattagaaaatacatagaaggggaacaataaaaaatatctaccttcaccaaaccatatcaaggcttcaacaaaataattaaaaaattctttatgttggataacaattatataggaaatactatacgacccccaaaccccaccccacaccccacccccccccaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatataCTGCAACAT-CATATGTATACAACAAATGGACCCTAA-TAATTTGGCACA------CAGAACAAT-GCTTTA--GATTATGCTTAATAGA-TTGTTATAGTGTAATAGAT---GCATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAACCT---ACTTAAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTCTCTCTCACACACACTCATTCAGGCCCCCTGGTGTAT-----ACACA-TAGTAACACATTGT-ATGTATACATCACA--TCT--GTACAATATT-AGCG----ATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAG---AAAGATAGATCTTA-GCATTACACATA-A---------TGTCCCCC---CCCCCTTTGTTTTTT------TC-----A----ACCA-AACACACAT-TTTGTGGAATTCTCAGG-ATCATCTCAAA---ACTTACAGCAGAAACTGGCCACGC---CCAAAGC-GGACC-CTTAACGAAGCC----------GTAA-------CT----AT-CAT-TG-TT---TCATTATTTAC-TTTTCATT---GGTATAGAAGGT-GCGTGTAT---TTGGGGGAGG--ATGCGTGGaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|8 : -TGGTATTTTTTTTCTATT---GTAG-------CCGGCAGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTTAGTCTG---------AGTAATATGCTCT-GTTGAT-GAAG-------------------------AGTGTG-----GTTCTTTGACTAA-AA-ATGCTGCTGT--ACC---AAGTATGATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAG-A-AT-ATCTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT---TTT-T---TTTTTTAAATAT-ATCATC-----ATATTATGTA-CA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---TAAAAAAATGA---GGGACT-C-ATAAAT-GAAAT----TGGG-TT--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATC---TAGA----TGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TCATA--GCTTC--
gi|9 : cctGCACGTA--AACCAATCAACTACTTTC--TGTTGACACTT-TCCTGCTTCT-GAACAATGGAGGTATATCTC-ACTC-C--ACTATCCTTTCTGCTGG-TATGTAGACAT---GTGTC-AC-T-T---ACATATTCCCCTCA--TTGC-GCAGTGGTCTTCACAAATTTTC-AA--GCGAA---TCAAAGCAATC-ACAATACTTC--AAAACTCCTGC-ATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCAT---GGCG-GAC-AATTCTCCGGCC-CCCCGACTTCCCCTGGAGGCGGCG-TGC----AGCATGATGCGTAA-C-TCCGCCTCCCC-CTGACG--ACGTGGAAGCttcttttgtttatgtttaggattct
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 11 444444444444444 1 11 222222 11 11 222 8888888888888888888888888888888888888888 11 2222 33333333 222 2222 22222 11 222 222 11 555555555555555555 111 1 1 3333333 1 1 1 2222 222 1 1111111 2222222222222 111 11 22222222 1 11 11 111 11 222 33333333 111 33333 11 111 3333333333 11 55555555 111 444444444444 55555555555555555 111 444444444444444444444444444444444444444444 11 111 11111 1111 1111 2222222222 33333333333333 2222222 111 11111 11 11 111 1111 11 11 222222222 22222 111111111 1111 222 11 1111 11111 1 111 222222222 22222222222 222222 11 111 11 11 1111111 11111 111 1 1 1 111 1111 11111 1 111 222222222222 111 1 111 22222 1 1 11 2222 22222 11 2222 6666666666666 11 1 11 22 2222 222 5555555555 1 1 1 5555555555 222 11 11111 11 22 444444444444444444444444 22222 2222222222222222222222 11 22 1 22222 44444444 11 2222 1 1 5555555555555555555555555 1 111 1 44444444 1 11 111111111 111 22 444444444444444444 1 1 1111 2222 33333333333 111 1 777777777777777777777777777777 1 1 111 1 222 1 1 5555555555555555555 222222 1 1 11 1 1 1 1 1 333333 2 1 1 222222 1 111 2222 4444444 333 111 1 222 111 111111 11 1 22222222 1 1 111 1 1 11 11 1 22222 111 1111111 1 1 1 222 1 1 111 1 111 11 1 2222 111 333333 1 1 1 1 3333333 1 3333333 22222 2222222 1 1 22222222 1 1 1 111 11
lowQualScore : 88 1 000000000000000 5 88 22 999999 88 66 111 9999999999999999999999999999999999999999 88 4444 55555555 333 0 6 7 8888 33333 88 333 888 33 888888888888888888 3 111 0 0 5555555 0 0 0 3 1111 0 777 0 9999999 8 9999999999999 111 11 99999999 8 6 99 11 8 8 88 8 222 11 666 44444444 999 444 22222 0 0 11 8 8 0 444 6666666666 8 8 66 8 44 0 44444444 0 444 666666666666 0 5 8 8 0 8 8 99 6 6 6 6 88888888888888888 111 6 6 888888888888888888888888888888888888888888 0 88 111 1 33333 8 7777 7777 8888888888 555 8 8 66666666666666 1111111 99 111 66666 0 8 11 11 8 444 8 3333 1 11 11 222222222 8 8 1 8 00000 0 8 555555555 8 1 0 0 5555 1 1 444 8 8 33 7777 44444 6 444 555555555 3 55555555555 111111 11 444 5 0 8 11 11 8888888 33333 777 0 0 0 3 0 111 1111 88888 0 777 888888888888 777 0 777 1 66666 5 1 5 88 4444 1 77777 88 5555 6 7 7 0000000000000 88 3 88 00 7 2222 6 333 6 7 8888888888 3 3 3 0000000000 333 11 33333 55 7 00 888888888888888888888888 00000 9999999999999999999999 7 88 00 2 88888 00000000 99 5555 0 2 5 4444444444444444444444444 99 2 0 7 777 0 99999999 0 0 66 8 555555555 1 444 1 22 888888888888888888 0 2 0 3333 2222 11111111111 666 777 5 0 3 777777777777777777777777777777 0 5 777 0 3 1 111 0 0 3333333333333333333 999999 3 6 3 88 0 3 3 3 3 3 111111 3 7 3 7 3 555555 3 888 7 8888 3333333 000 999 6 3 77 333 777 888888 33 0 33333333 0 0 000 0 3 2 99 0 33 9 3 33 0 3 55555 777 55 9999999 0 5 0 999 0 0 1 000 0 555 33 3 3 0 1111 444 111111 2 0 3 7 3 3 7 2222222 0 1111111 2 55555 1 8888888 0 0 99999999 0 0 0 888 33
lowQualScore : .. . ............... . .. .. ...... .. .. ... ........................................ .. .... ........ ... . . . .... ..... .. ... ... .. .................. . ... . . ....... . . . . .... . ... . ....... . ............. ... .. ........ . . .. .. . . .. . ... .. ... ........ ... ... ..... . . .. . . . ... .......... . . .. . .. . ........ . ... ............ . . . . . . . .. . . . . ................. ... . . .......................................... . .. ... . ..... . .... .... .......... ... . . .............. ....... .. ... ..... . . .. .. . ... . .... . .. .. ......... . . . . ..... . . ......... . . . . .... . . ... . . .. .... ..... . ... ......... . ........... ...... .. ... . . . .. .. ....... ..... ... . . . . . ... .... ..... . ... ............ ... . ... . ..... . . . .. .... . ..... .. .... . . . ............. .. . .. .. . .... . ... . . .......... . . . .......... ... .. ..... .. . .. ........................ ..... ...................... . .. .. . ..... ........ .. .... . . . ......................... .. . . . ... . ........ . . .. . ......... . ... . .. .................. . . . .... .... ........... ... ... . . . .............................. . . ... . . . ... . . ................... ...... . . . .. . . . . . . ...... . . . . . ...... . ... . .... ....... ... ... . . .. ... ... ...... .. . ........ . . ... . . . .. . .. . . .. . . ..... ... .. ....... . . . ... . . . ... . ... .. . . . .... ... ...... . . . . . . . ....... . ....... . ..... . ....... . . ........ . . . ... ..
lowQualScore : 00 0 555555555555555 0 55 00 555555 00 55 555 0000000000000000000000000000000000000000 00 0000 00000000 333 7 7 3 3333 77777 33 333 000 88 000000000000000000 2 000 0 0 0000000 0 0 0 2 2222 2 555 0 0000000 0 8888888888888 888 00 00000000 0 0 00 00 0 0 88 0 000 00 000 00000000 444 000 00000 6 8 00 0 0 8 000 2222222222 0 0 00 0 00 7 77777777 8 000 888888888888 8 6 0 0 8 0 0 22 7 7 7 7 00000000000000000 777 7 7 222222222222222222222222222222222222222222 6 55 777 7 33333 0 0000 0000 0000000000 222 0 0 22222222222222 7777777 22 777 77777 8 0 00 00 0 000 0 0000 0 00 22 000000000 0 0 0 0 00000 8 0 666666666 0 4 8 8 4444 0 4 888 0 0 00 0000 22222 0 000 000000000 2 22222222222 666666 00 000 0 8 0 00 88 0000000 00000 444 0 0 0 2 2 000 5555 55555 0 555 000000000000 555 0 555 0 00000 0 0 5 00 0000 0 00000 00 0000 7 3 3 3333333333333 33 3 33 77 3 7777 7 333 7 3 3333333333 3 3 3 3333333333 333 00 77777 77 3 00 444444444444444444444444 00000 3333333333333333333333 3 33 77 0 33333 77777777 33 0000 0 5 5 5555555555555555555555555 00 5 0 0 555 0 88888888 2 0 55 0 888888888 0 000 4 00 222222222222222222 0 5 0 0000 8888 88888888888 888 888 8 0 0 888888888888888888888888888888 0 5 555 0 2 0 555 0 0 5555555555555555555 000000 3 7 3 33 7 3 3 3 3 3 777777 7 3 3 3 3 333333 3 333 3 3333 3333333 333 333 7 3 33 333 000 888888 88 0 55555555 0 0 222 0 2 5 00 0 22 2 2 88 0 2 00000 555 00 5555555 0 0 0 222 0 0 0 222 0 000 88 2 2 0 2222 888 333333 0 7 3 3 3 3 3 5555555 0 5555555 5 00000 2 5555555 0 0 22222222 0 0 0 000 88
consensus : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAA---AATT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCG-TCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTCT--TGACTACT-G--TGTG-C-CCTTGACCA---------AAAATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACT-C-ATAAAT-GAAAT----CGGG-TC--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATC---TAGA----NGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGA-T-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCAT-CAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTTAAA-TTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTT----GTTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
Reference ( family-2541 ) : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAA---AANT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCGGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTCT--TGACTACTAG--TGTGNTTCCTTGACTA---------AAAGTGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACT-C-ATAAAT-GAAAT----CGGG-TC--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATC---TAGA----NGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGA-T-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCATNCAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTTAAAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ACTTTTGAA-ACGTTGTCGATCTT----GTTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--NAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCCGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
gi|1 : GCATTCC---TGTGGGGTCACAATGGAACTGGA-TC----TAACTC-A--AGAC--AAGATACATTGA---GTCAATAT--AGG--CAAA---G----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AATATA-AAA----AATTAT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-T-GC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC----ATACT----TG-GG---AACTTG---CAC-----AGATATCA--AAATCTC-CA-ACAA---AGT---------ACA-TGTTG-CAAGGTTCA-ATCGGT-AAAATATCAAATAAGCCTTCAAA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCAGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCT-T--TGACTACNNN--NNNNNNNNNNNNNNNNNNNNNNAACAACATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAAGA-AT-ATTTTTTA------------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT-T-T-TTTT-AAAACATAATCATC-----ATATTATGCACCA-AA--CTATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGAGGACT-C-ATAAAT-GAAAT----TGGA-TC--AAT-ATCA---GGGATGCG----GT---GCTGG-----ATC---TAG------GGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAATGAA-T-CTTTCTTTG-TTG--T--CA-TTT---TAGGCA-----TCTTCGACCCCC---CCCC-CCCC---CCCCCCCCCCCCC
gi|1 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctaAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAA-A-----ATATGTA------ATTG-TTGTAAAAAGTTT----TATAAGTACACAA--ATTGCCCTAATGAT----TTTAATGAAAATACT-T--T-----AG---AT--ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGAT-------CCATAATT---ATTATCACCATACTA-TGTTGTAC--AT--ATG-ATTTTCGTTA-------G--TCATACAGGCC---TGATGCATGCAATACACTATAA-GACACATT-TTAT---CACATC-CAGCTCTATGTACAAAATTCAG-ATT-CATTGCAACACGCCACATTTACTTTATT-T--TCAC-AGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAC---C----TAAATCTTA-ATAC-ATATATA-A-GTACCT-CTCTCTCTCTTCCCCCCCCT--TTTTT------TTTTTTAA----ACCA-AATACACAT-TTTTTGGAATCCCNNNN-NNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN----------NNNNNNNNNNTAT----GT-CAT-TGTTT---TCATCATTTAC-GTT-CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGT-------GT--GTGTGTGGGGGGGGGGGGTGTATGTGCA-TAAGGACGTGCTAT-TCT--CAGTCAGAAA-CTATG-CATGTAACTA-TTATCT-AATA-CACAGCTGTCACAGTTAAA-TTACATTTC-ATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTT----GTTTTTCTCT-------CGTTGTATATTGCA----ACTGC--AAATGGGGCC-TACAGCTATTACAGCACGCA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GA-TAC-----CGT---GTGTCCATGT-T---ACAT-TTCCCC-CA---TGC-GCAG-GTTTTTCACAA-TTTTC-AA--GCGAA--TTCAAAGC-ATT-TCG----TT--TAAAACATCTGCAA-CTAAACACCTCCACG-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGGACAATTCTCCCGC-----GATTTCGT----GAT-TGGCT-TGC----G--AAGATG-GTAACC-TCCACCTCCCC-T-GACG--ACATGGAAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcttgcagtcaattgaatatgtgcatgtgtttgtgcgtctggcaggtaacattgtcaaaagagatcaaaaccctgcaaaatatgtaattgttgtaaaaagttttataagtacacaaattgccctaatgattttaatgaaaatactttagatatgccatagcaaaaataatgtaaaagtcgatctgatccataattattatcaccatactatgttgtacatatgattttcgttagtcatacaggcctgatgcatgcaatacactataagacacattttatcacatccagctctatgtacaaaattcagattcattgcaacacgccacatttactttattttcacagacatcagaagtatgtaataggaggttatcgtatacgttacgtacctaaatcttaatacatatataagtacctctctctctcttccccccccttttttttttttaaaccaaatacacattttttggaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtcattgttttcatcatttacgttcaatttaggttgaagggtgcgtgtgtgtgtgtgtgtgtggggggggggggtgtatgtgcataaggacgtgctattctcagtcagaaactatgcatgtaactattatctaatacacagctgtcacagttaaattacatttcatttgattgataaaacaaaacttcacatttttgaaacgttatcgatcttgtttttctctcgttgtatattgcaactgcaaatggggcctacagctattacagcacgcaaaacaattatttttctgtgacttttgttctgaaaatggggtaatcttcactcctactagcctttctggataccgtgtgtccatgttacatttcccccatgcgcaggtttttcacaattttcaagcgaattcaaagcatttcgtttaaaacatctgcaactaaacacctccacgcatgtgcaccatcggtgttttgacggaggtcatgggccggacaattctcccgcgatttcgtgattggcttgcgaagatggtaacctccacctcccctgacgacatggaagcgt
gi|10 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctagcattcctgtggggtcacaatggaactggatctaactcaagacaagatacattgagtcaatataggcaaagaatatttatcatcaaattgatcaatgcatagtgttgaaatataaaaaattattgattccaaaataatgtctctgcgtgcctcatcagtgttaaaataattgcaattcttttgtcatgtccctccttcttttacatacttgggaacttgcacagatatcaaaatctccaacaaagtacatgttgcaaggttcaatcggtaaaatatcaaataagccttcaaagtggtattttttttctattgtagtagaatattgtttttggtaaaaagggatagcttgttgatagggttgatctaataactggagttgatgatgattcagtctgagtatgctctgttgatgaagagtgtggttctttgactacnnnnnnnnnnnnnnnnnnnnnnnnnaacaacatgctgctgttaaccaagtattatcaaatgaatctgtaaacaaagaacaaagaatattttttaagtattgtgcaaatgccaaatcattaatggacaaagcatgcacattaagtaagatacaacaatttttttaaaacataatcatcatattatgcaccaaactataaccattgtatttagaagcaaaaaaaaaaaaatgaggactcataaatgaaattggatcaatatcagggatgcggtgctggatctaggggacaatacatttccccttcactaacctcagctttcaaacattattaaaaatgaatctttctttgttgtcattttaggcatcttcgaccccccccccccccccccccccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGG--CAAA---A----ATATATATA-TATTTATCAAT-CAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAA-TATAAA----AATTCT---TG-ATTTCCAAATAA-TTG---TCT-------G-GCGC----CTCATCAGGATATTTAAAAA--------TA-ATT-GC--AATTC--TTTTAGTGCATG--CC-CTCT--TTCT--TTTAC--CCCCACTGCTCTG-GGGGGAACTTG---CAC-----AGATAC----AAATCTC-CA-ACAA---AATT---A-ATAACA-TTGTG-CAAG-TTCACATTGGT-AAAATACCAAATGAACAGC--GACGTTGGTATATT-----TATC---ATAG-------------GAATATTgt
gi|11 : tTTTTTTTCTATT---GTAG-------T----AGA-------------T-A-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCTGA-TAACTGGAGTTGTGGAT-G-AT------TA---------AGTA---TACT--------------AGT---ACTCTAT--T--CTGCT-G--TGTAATTCTTTGAC--------------GTGCTGCTGT--ACC---AAGTATTATC--A--
gi|11 : atgaaaccagcttagcgcttttcagtactttgaTTA------------T-CATTGTG-------CA--AATGCCAAATC---AT-----AAAttgtgcaaatgccaaatcataaac
gi|12 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaAA-T-G---TCTC-TG--C----------CTCATCAG--TGTT--AAAAATACAATGTA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCT--TTCT--TTTACATGCATGCT----T---GGG-AACTTG---CACA----GTATATCA--AAATCTC-CA-AC-A---AATT---ATA--ACACTGTTG-CAAGGTTCACATTGGT-AAAATc
gi|14 : TTT-------GACG-GAGATAATG--G-CT-GACAATTCTTCCGC-----GATTT--T----GAT-TGGCTGTGA----G--AAGATG-GTAA-C-TGCGTCACCCC-C-GACA--TCATGGAAG
gi|15 : tg-A-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCTAA-TAACTGAAGTTGATGAT-G-ATAC---------------AGTA---TGCTCT-GTTGAT-GAATAGTGTGGTTaga
gi|2 : --AGG-GTTGATCTAA-TAACTGGAGT-GATGATTG-ATTCG--C-----------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGATTCTCT--TGACTA--------------------------------AAATGCTGCTGT--ACC---AAGTATTATT--ATTAATGAATC-GGTA----AG-A----AAC---A------ACA--GA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATAT-CTTT-TAAAAAT-ATCATC-----ATATTA-GCA-CA-AA--C-AT---A-CCTTTGTATTTAGAAGCA---TAAAAATGAGA---GGGACT-C-ATAAAT--AAAT----CGGG-CC--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATTA--TAGA----GGGG--ACAAT---A-ATTCTA-CC--TTCAC--AAC---C---TC--A--GCTT---C-AACA-TTATTTGAAAATGGA-TATTTTCTTTG-TTG--T--CA-TTT---TAGG-A-----CC-----CCCCC---CCCC-CCCC---CCCCA
gi|2 : CTTTAATGCATAT--T------GGCC---TGATACAT-----ACACAAT-GTTACAAATA-A-ATG-A-ACATgtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|2 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatataAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA-------AGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATTTAAATTA----CAAACTA-T---GTGTAGATTATT---ATTTCTTTATTGTATAA--ACATGTAG---CC-TGATGCAT-----ACACAA-----------T-T-A-G-ACACATCACA--TCT-TGTACAAAATTTAG-GTTACATTG---------ACATTTA-TTTATT-A--TCAC-A-GC-CCAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTCAC---G-TAGATCT----TAGATCTTATACAC-ATGTATACACATACATAATGTGCCCC---CCCCCCCTTGTTTTT------TC-----A----ACCATAACACA-AT-TTTTAGGAATCTCGGTC-ATC---TCAAACTTACAG----CAGAAACTGGCCACGCAAAGCGACTTATGACG-TGTGAAGGTGGG----------GGAA-------A------T-TAT-TG-TT---TCATTATTTAC-TTTTCAGT---GGT-TGAAGGGT-GCGTGTGT---T-------GG--------GAGGGGGGGGGGTGCAT-T-TA-TAA-GACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGTA-CTA-TTGACT-AATTG-A-A-CTGTCACAGTTAAAATTACA-TTC-AATTGATTGATAAAAC-AA-CTT---AA-TTTGAA-ACA-TGTCGATC-T----GTTTTTTTCTCCTCTTACGTTGAATATTGCACTGCAATGCTTGAAT-GGGCC-TA-GGCTA---CAGCACGT---AAACAAT----T-TTTTC--TGT-GAA--AA-T--TG-TTCT-G---AATGG-GGTGTATCT-CACTC-CT-ACTATCC-TTCTG--GG-T-C-----CGT---GTGT-CAC-T-T---ACAT-TT-CCC-CA---TGC-GCAG-GTCTTTCAC---TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCA----TT--aataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|3 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaACATTAATT--AGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAAG------CATTCC---TGTGGGGTCACAATGGAACTG-AATC----TAACTCCA--GGACCCAAGATACATTTAACCGTCAATATTTAGGGTCAAA---ACGTCA-------ACTATTTATCA-TTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA-AAT-TATAAGCAACAATTTCATGTG-ATTCCAAAATAACT-G---TCTC-TGGGCG-TCGC----CTCATCA---TGTT--AAAA--------TA-ATTTGCGAAATTC--TTTT-GT--ATG-TCC-CTCC--GTCT--TTTAC----ATATT--------GGG-AACTTGAGACACC----ATATATCA--AAATCTCTCA-ACAACCTAAGT---A-----CA-GTTTG-CAAGGTTCA----------AAT------CGAGCCT--------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCT----AGAATAT-GTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGATGAT-GGATTTG-TCTGTAGAATCGTAATA---TGCTCTTGGTGATTGAAGAGTGTGGTTCTCTGTTGA-TACTAAAATGTGCC-CCATGTCCA---------AGAGTA------TTAATC---AAACA-----------ATGAATC-TGTA----AACA----AAGCGCAATCGCTACAGGGAGATAACTCTTTA------------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGATG---ACTTAAAT-T-T-TTTT-TTAACAT-CTTGTCATGTAATATTATGTACCACAACCC-CTA--ACCCATTGTATTTAGAAGCACCTAACAAAAATGAA-GGGGACT-CGATAAATAGAAATTCGACGGGTTT--AATGATCA---GGGATGCA----TTTTCG-TGG-----ATCTATTAGACTTCTGGG--ACAAT---ACA-TTCC-CCAGTTCACT-AACCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAATGGA-T-CTTCCTTCATTTG--T--CATTTT---TAGG-A-----TTTTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgTATA-A-GGACAA-GTATCCCCC---CCCCTTCT--TTTTT------Tac
gi|4 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagattACATTAATTGAATAGG-----CAAACTTT-AATT-TCATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGT----AGACCCTAGTAGTTAAATCAAGCCAAACTT----TAAAGAGAT--GATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACTC-AATTGAT--AATAGATAATGA---GTCAATA-T-AGG--CAAAGGCA----A-------A-TA-TTATCA-T-CAA-ATTGATCCAATGG-----CATAGTGTT-GA-AAT-TATAAA----AATTCTC--TGAATTCCAAAATAAGT-GGTTTCTCGTG--CGTTTGCTTCTTTCATCAG---GTT--GAAA--------TACATTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTA---GCATACT----TGAAGAA-AACTTG---CACCTCTTATA-ATCAAGAAATCTC-CAGACAA---AAGTACAA-A--ACA-TGTTACCAAGGTGCAATTTGGTAAAAATATCAAAtttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttacattaattgaataggcaaactttaatttcattttatttattacaacagacatattttaaaaattacagtagaccctagtagttaaatcaagccaaactttaaagagatgattgggcatttcctttgcgggatcacaatggaactggaatcgtaacaactcaattgataatagataatgagtcaatataggcaaaggcaaatattatcatcaaattgatccaatggcatagtgttgaaattataaaaattctctgaattccaaaataagtggtttctcgtgcgtttgcttctttcatcaggttgaaatacattggcaaattctgttttgtcatgatccgctccaaatcttatttagcatacttgaagaaaacttgcacctcttataatcaagaaatctccagacaaaagtacaaaacatgttaccaaggtgcaatttggtaaaaatatcaaa
gi|5 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttTTATT-TGGTCAC-AGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT-AC---GATAG---AC---TATATCTTA-ATA--ACATATA-A-GTACAT-ACTTACCCC---C----------TTGTAAAAAACC-----AGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCAT-GCGTCAAA---AACT----TACAAACAGAAAACGCGGCCCGCCGAAAG-CGACTTAATGAAAGGTGAATGGTAGGGAA-------ATTAAAGTGCATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGT---T-------GGCGGTG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCT--CAGTCAGAAAACTTTGGCATGTA-CTAATTATCTTAATAGCAC--CTGTCACAGTTAAA-TTAACTTTCTATTTGATTGATAAAACAAA-CTT---ACTTCTGAACACGT--TCGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCA--ACACTGC--CAAGGGGGCCGTACAGCTA---CAGCACGTAAGAAACAATTA--T-TTTTCTGTGT-GAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTA-GCTTTCTG--GATTAC-----CGTGTGGTGTCCAC-TGTTTAACAT-TT-CCC-CATTTTGCTGCAG-TGTTTGCACAA-TTTTCTGAGTGCGAAATTTCAAAGCAATCTTCG----TTAAAAAAACATCC-----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-G-TTT-------GACG-GAGGTCATGTAGG-C-GACAAATATTCGCC-----GGATTC-T----GAT-TGCTT-TGTTGCGG--AAGATG-GTAA-CGTCCACCTCCCCAT-GACGACACGTGGAAG
gi|6 : GTTAGCCCTCAAGTACTATCCAA--AATGAATCATGTACAGAAACACCAGAAT---A------ACGAGAA-TT-ATTTTTTATACAATCCTTTAA-TGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA-TATATCTTATAAAAAT-ATCATC-----ATATTATGCACCA-AA--A-ACAATA-CCTTTG-AATTAG----A---AATAAAAAAGAG-AGGGACTCC-ATAAAT-TAAAT----CGGG-GCCAAATAATCAAAGGAGATGCAAGATGTA--ATTAGAAAATACA---TAGA----AGGGGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAAC-AAAA-TAA-TTAAAAA---ATT-CTTTAT--G-TTGGATAACA-ATTATATAGG-AAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCgc
gi|6 : CTTTAT-GTATAT--TT-----GGCC---TGATGCAT-----ACACAAT-GTTACACAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|7 : gttagccctcaagtactatccaaaatgaatcatgtacagaaacaccagaataacgagaattattttttatacaatcctttaatgctatagagagatcaaatgccacatccagattgagacaaagccaattgcaacatttaggaaaatgtaacaaatatatcttataaaaatatcatcatattatgcaccaaaaacaatacctttgaattagaaataaaaaagagagggactccataaattaaatcggggccaaataatcaaaggagatgcaagatgtaattagaaaatacatagaaggggaacaataaaaaatatctaccttcaccaaaccatatcaaggcttcaacaaaataattaaaaaattctttatgttggataacaattatataggaaatactatacgacccccaaaccccaccccacaccccacccccccccaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatataCTGCAACAT-CATATGTATACAACAAATGGACCCTAA-TAATTTGGCACA------CAGAACAAT-GCTTTA--GATTATGCTTAATAGA-TTGTTATAGTGTAATAG---ATGCATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAAC-CTACTT---AAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTCTCTCTCACACACACTCATTCAGGCCCCCTGGTGTAT-----ACACA-TAGTAACACATTGT-ATGTATACATCACA--TCT--GTACAATATT-AGCG----ATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAG---AAAGATAGATCTTA-GCATTACACATA-A---------TGTCCCCC---CCCCCTTTGTTTTTT------TC-----A----ACCA-AACACACAT-TTTGTGGAATTCTCAGG-ATCATCTCAAA---ACTTACAGCAGAAACTGGCCACGC---CCAAAGC-GGACC-CTTAACGAAGCC----------GTAA-------CT----AT-CAT-TG-TT---TCATTATTTAC-TTTTCATT---GGTATAGAAGGT-GCGTGTAT---TTGGGGGAGG--ATGCGTGGaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|8 : -TGGTATTTTTTTTCTATT---GTAG-------CCGGCAGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTTAGTCTG---------AGTAATATGCTCT-GTTGAT-GAAGAGTGTGGTTCT-------------------------TTGACTA---------AAAATGCTGCTGT--ACC---AAGTATGATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAG-A-AT-ATCTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT---TTT-T-T-TTTT-TAAATAT-ATCATC-----ATATTATGTAC-A-AA--C-ATA--A-CCATTGTATTTAGAAGCA---TAAAAAAATGA---GGGACT-C-ATAAAT-GAAAT----TGGG-TT--AAT-ATCA---GGGATGCA----GT---GCTGG-----ATC---TAGA----TGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TCATA--GCTTC--
gi|9 : cctGCACGTA--AACCAATCAACTACTTTC--TGTTGACACTT-TCCTGCTTCT-GAACAATGGAGGTATATCTC-ACTC-C--ACTATCCTTTCTGCTGG-TATGTAGACAT---GTGTC-AC-T-T---ACATATTCCCCTCA--TTGC-GCAGTGGTCTTCACAAATTTTC-AAG--CGAA--T-CAAAGCAATC-ACAATACTT--CAAAACTCCTGC-ATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCATG--G-CG-GACAATTCTCCGGCCCCCCGACTTC-CCCTGGAGGCGGCG-TGC----AGCATGATGCGTAA-C-TCCGCCTCCCC-CTGACG--ACGTGGAAGCttcttttgtttatgtttaggattct
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444444 1 11 222222 11 11 222 8888888888888888888888888888888888888888 11 2222 33333333 222 2222 22222 11 222 222 11 555555555555555555 111 1 1 3333333 1 1 1 2222 222 1 1111111 2222222222222 111 11 22222222 1 11 11 111 11 222 33333333 111 33333 11 33333333333 11 55555555 111 444444444444 55555555555555555 111 4444444444444444444444444444444444444444444444 11 111 11111 1111 1111 2222222222 33333333333333 2222222 111 11111 11 11 111 1111 11 11 222222222 22222 1111 11 1111 222 1 11 1111 11111 111 22222222222 3333333333 222222 11 1111 11 1111111 11111 111 1 1 1 1 1 1111 11111 1 111 222222222222 111 1 111 22222 1 1 11 2222 22222 11 2222 6666666666666 11 1 11 22 2222 222 5555555555 1 1 1 5555555555 222 11 11111 11 22 666666666666666666666666 22222 2222222222222222222222 11 22 1 22222 44444444 11 2222 1 1 5555555555555555555555555 1 111 1 44444444 1 11 111111111 111 22 444444444444444444 1 1 1111 2222 33333333333 111 1 777777777777777777777777777777 1 1 111 1 222 1 1 5555555555555555555 222222 1 1 11 1 1 1 1 1 333333 1 1 1 222 1 1 2222 4444444 333 222 1 222 111 111111 11 1 22222222 1 1 111 1 1 11 11 1 22222 111 1111111 1 1 1 222 1 1 111 1 111 11 1 2222 111 333333 1 1 1 1 3333333 1 3333333 22222 2222222 1 1 22222222 1 1 1 111 11
lowQualScore : 88 1 000000000000000 5 88 22 999999 88 66 111 9999999999999999999999999999999999999999 88 4444 55555555 333 0 6 7 8888 33333 88 333 888 33 888888888888888888 3 111 0 0 5555555 0 0 0 3 1111 0 777 0 9999999 8 9999999999999 111 11 99999999 8 6 99 11 8 8 88 8 222 11 666 44444444 999 444 22222 0 0 11 8 8 0 99999999999 8 8 66 8 44 0 44444444 0 444 666666666666 0 5 8 8 0 8 8 99 6 6 6 6 33333333333333333 111 6 6 5555555555555555555555555555555555555555555555 0 0 88 111 33333 8 7777 7777 8888888888 555 8 8 66666666666666 1111111 99 111 66666 0 8 11 11 8 444 8 3333 1 11 11 222222222 8 8 1 8 00000 0 8 4444 0 99 1 0 5555 1 1 444 6 33 7777 44444 8 8 444 33333333333 4444444444 111111 11 5 4444 8 11 3 8 8888888 33333 777 0 0 0 0 22 0 1111 88888 0 777 888888888888 777 0 777 1 66666 5 1 5 88 4444 1 77777 88 5555 6 7 7 0000000000000 88 3 88 00 7 2222 6 333 6 7 8888888888 3 3 3 0000000000 333 11 33333 55 7 00 555555555555555555555555 00000 9999999999999999999999 7 88 00 2 88888 00000000 99 5555 0 2 5 4444444444444444444444444 99 2 0 7 777 0 99999999 0 0 66 8 555555555 1 444 1 22 888888888888888888 0 2 0 3333 2222 11111111111 666 777 5 0 3 777777777777777777777777777777 0 5 777 0 3 1 111 0 0 3333333333333333333 999999 3 6 3 88 0 3 3 3 3 3 111111 3 7 3 7 3 333 88 3 7 2 7 8888 3333333 000 222 6 3 77 333 777 888888 33 0 33333333 0 0 000 0 3 2 99 0 33 9 3 33 0 3 55555 777 55 9999999 0 5 0 999 0 0 1 000 0 555 33 3 3 0 1111 444 111111 2 0 3 7 3 3 7 2222222 0 1111111 1 55555 1 8888888 0 0 99999999 0 0 0 888 33
lowQualScore : .. . ............... . .. .. ...... .. .. ... ........................................ .. .... ........ ... . . . .... ..... .. ... ... .. .................. . ... . . ....... . . . . .... . ... . ....... . ............. ... .. ........ . . .. .. . . .. . ... .. ... ........ ... ... ..... . . .. . . . ........... . . .. . .. . ........ . ... ............ . . . . . . . .. . . . . ................. ... . . .............................................. . . .. ... ..... . .... .... .......... ... . . .............. ....... .. ... ..... . . .. .. . ... . .... . .. .. ......... . . . . ..... . . .... . .. . . .... . . ... . .. .... ..... . . ... ........... .......... ...... .. . .... . .. . . ....... ..... ... . . . . .. . .... ..... . ... ............ ... . ... . ..... . . . .. .... . ..... .. .... . . . ............. .. . .. .. . .... . ... . . .......... . . . .......... ... .. ..... .. . .. ........................ ..... ...................... . .. .. . ..... ........ .. .... . . . ......................... .. . . . ... . ........ . . .. . ......... . ... . .. .................. . . . .... .... ........... ... ... . . . .............................. . . ... . . . ... . . ................... ...... . . . .. . . . . . . ...... . . . . . ... .. . . . . .... ....... ... ... . . .. ... ... ...... .. . ........ . . ... . . . .. . .. . . .. . . ..... ... .. ....... . . . ... . . . ... . ... .. . . . .... ... ...... . . . . . . . ....... . ....... . ..... . ....... . . ........ . . . ... ..
lowQualScore : 00 0 555555555555555 0 55 00 555555 00 55 555 0000000000000000000000000000000000000000 00 0000 00000000 333 7 7 3 3333 77777 33 333 000 88 000000000000000000 2 000 0 0 0000000 0 0 0 2 2222 2 555 0 0000000 0 8888888888888 888 00 00000000 0 0 00 00 0 0 88 0 000 00 000 00000000 444 000 00000 6 8 00 0 0 8 00000000000 0 0 00 0 00 7 77777777 8 000 888888888888 8 6 0 0 8 0 0 22 7 7 7 7 77777777777777777 777 7 7 2222222222222222222222222222222222222222222222 6 8 55 777 33333 0 0000 0000 0000000000 222 0 0 22222222222222 7777777 22 777 77777 8 0 00 00 0 000 0 0000 0 00 22 000000000 0 0 0 0 00000 8 0 0000 8 00 4 8 4444 0 4 888 0 00 0000 22222 0 0 000 22222222222 2222222222 666666 00 0 8888 0 00 8 0 0000000 00000 444 0 0 0 0 88 0 5555 55555 0 555 000000000000 555 0 555 0 00000 0 0 5 00 0000 0 00000 00 0000 7 3 3 3333333333333 33 3 33 77 3 7777 7 333 7 3 3333333333 3 3 3 3333333333 333 00 77777 77 3 00 888888888888888888888888 00000 3333333333333333333333 3 33 77 0 33333 77777777 33 0000 0 5 5 5555555555555555555555555 00 5 0 0 555 0 88888888 2 0 55 0 888888888 0 000 4 00 222222222222222222 0 5 0 0000 8888 88888888888 888 888 8 0 0 888888888888888888888888888888 0 5 555 0 2 0 555 0 0 5555555555555555555 000000 3 7 3 33 7 3 3 3 3 3 777777 3 3 3 3 3 333 33 3 3 0 3 3333 3333333 333 000 7 3 33 333 000 888888 88 0 55555555 0 0 222 0 2 5 00 0 22 2 2 88 0 2 00000 555 00 5555555 0 0 0 222 0 0 0 222 0 000 88 2 2 0 2222 888 333333 0 7 3 3 3 3 3 5555555 0 5555555 0 00000 2 5555555 0 0 22222222 0 0 0 000 88
consensus : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAAAATT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTC-GTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTC--TTGACTACT---GTGTG--CCCT-TGACCA------------AAAATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----NGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCAT-CAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
Reference ( family-2541 ) : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAAAATT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTC-GTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTC--TTGACTACT---GTGTG--CCCT-TGACCA------------AAAATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----NGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCAT-CAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
gi|1 : GCATTCC---TGTGGGGTCACAATGGAACTGGA-TC----TAACTC-A--AGAC--AAGATACATTGA---GTCAATAT--AGG--CAAA---G----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AATATA-AAA----AATTAT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-T-GC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC----ATACT----TG-GG---AACTTG---CAC-----AGATATCA--AAATCTC-CA-ACAAAGT---------ACA-TGTTG-CAAGGTTCA-ATCGGT-AAAATATCAAATAAGCCTTCAAA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCAGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCT---TTGACTACN---NNNNN--NNNN-NNNNNNNNNNNNNNNAACAACATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAAGA-AT-ATTTTTTA------------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT-T-T-TTTT-AAAACATAATCATC-----ATATTATGCACCA-AA--CTATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGAGGACTC-ATAAAT-GAAAT----TGGA-TC--AAT-A-TCA---GGGATGCGG--T---GC---TGGA-----TC---TAG------GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAA-TGAAT-CTTTCTTTG-TTG--T--CA-TTT---TAGGCA-----TCTTCGACCCCC---CCCC-CCCC---CCCCCCCCCCCCC
gi|1 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctaAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAA-A-----ATATGTA------ATTG-TTGTAAAAAGTTT----TATAAGTACACAA--ATTGCCCTAATGAT----TTTAATGAAAATACT-T--T-----AG---AT--ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGAT-------CCATAATT---ATTATCACCATACTA-TGTTGTAC--AT--ATG-ATTTTCGTTA-------G--TCATACAGGCC---TGATGCATGCAATACACTATAA-GACACATT-TTAT---CACATC-CAGCTCTATGTACAAAATTCAG-ATT-CATTGCAACACGCCACATTTACTTTATT-T--TCAC-AGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAC---C----TAAATCTTA-ATAC-ATATATA-A-GTACCT-CTCTCTCTCTTCCCCCCCCT--TTTTT------TTTTTTAA----ACCA-AATACACAT-TTTTTGGAATCCCNNNN-NNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN----------NNNNNNNNNNTAT----GT-CAT-TGTTT---TCATCATTTAC-GTT-CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGT-------GT--GTGTGTGGGGGGGGGGGGTGTATGTGCA-TAAGGACGTGCTAT-TCT--CAGTCAGAAA-CTATG-CATGTAACTA-TTATCT-AATA-CACAGCTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTTG----TTTTTCTCT-------CGTTGTATATTGCA----ACTGC--AAATGGGGCC-TACAGCTATTACAGCACGCA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GA-TAC-----CGT---GTGTCCATGT-T---ACAT-TTCCCC-CA---TGC-GCAG-GTTTTTCACAA-TTTTC-AA--GCGAA--TTCAAAGC-ATT-TCG----TT--TAAAACATCTGCAA-CTAAACACCTCCACG-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGGACAATTCTCCCGC-----GATTTCGT----GAT-TGGCT-TGC----G--AAGATG-GTAACC-TCCACCTCCCC-T-GACG--ACATGGAAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcttgcagtcaattgaatatgtgcatgtgtttgtgcgtctggcaggtaacattgtcaaaagagatcaaaaccctgcaaaatatgtaattgttgtaaaaagttttataagtacacaaattgccctaatgattttaatgaaaatactttagatatgccatagcaaaaataatgtaaaagtcgatctgatccataattattatcaccatactatgttgtacatatgattttcgttagtcatacaggcctgatgcatgcaatacactataagacacattttatcacatccagctctatgtacaaaattcagattcattgcaacacgccacatttactttattttcacagacatcagaagtatgtaataggaggttatcgtatacgttacgtacctaaatcttaatacatatataagtacctctctctctcttccccccccttttttttttttaaaccaaatacacattttttggaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtcattgttttcatcatttacgttcaatttaggttgaagggtgcgtgtgtgtgtgtgtgtgtggggggggggggtgtatgtgcataaggacgtgctattctcagtcagaaactatgcatgtaactattatctaatacacagctgtcacagttaaattacatttcatttgattgataaaacaaaacttcacatttttgaaacgttatcgatcttgtttttctctcgttgtatattgcaactgcaaatggggcctacagctattacagcacgcaaaacaattatttttctgtgacttttgttctgaaaatggggtaatcttcactcctactagcctttctggataccgtgtgtccatgttacatttcccccatgcgcaggtttttcacaattttcaagcgaattcaaagcatttcgtttaaaacatctgcaactaaacacctccacgcatgtgcaccatcggtgttttgacggaggtcatgggccggacaattctcccgcgatttcgtgattggcttgcgaagatggtaacctccacctcccctgacgacatggaagcgt
gi|10 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctagcattcctgtggggtcacaatggaactggatctaactcaagacaagatacattgagtcaatataggcaaagaatatttatcatcaaattgatcaatgcatagtgttgaaatataaaaaattattgattccaaaataatgtctctgcgtgcctcatcagtgttaaaataattgcaattcttttgtcatgtccctccttcttttacatacttgggaacttgcacagatatcaaaatctccaacaaagtacatgttgcaaggttcaatcggtaaaatatcaaataagccttcaaagtggtattttttttctattgtagtagaatattgtttttggtaaaaagggatagcttgttgatagggttgatctaataactggagttgatgatgattcagtctgagtatgctctgttgatgaagagtgtggttctttgactacnnnnnnnnnnnnnnnnnnnnnnnnnaacaacatgctgctgttaaccaagtattatcaaatgaatctgtaaacaaagaacaaagaatattttttaagtattgtgcaaatgccaaatcattaatggacaaagcatgcacattaagtaagatacaacaatttttttaaaacataatcatcatattatgcaccaaactataaccattgtatttagaagcaaaaaaaaaaaaatgaggactcataaatgaaattggatcaatatcagggatgcggtgctggatctaggggacaatacatttccccttcactaacctcagctttcaaacattattaaaaatgaatctttctttgttgtcattttaggcatcttcgaccccccccccccccccccccccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGG--CAAA---A----ATATATATA-TATTTATCAAT-CAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAA-TATAAA----AATTCT---TG-ATTTCCAAATAA-TTG---TCT-------G-GCGC----CTCATCAGGATATTTAAAAA--------TA-ATT-GC--AATTC--TTTTAGTGCATG--CC-CTCT--TTCT--TTTAC--CCCCACTGCTCTG-GGGGGAACTTG---CAC-----AGATAC----AAATCTC-CA-ACAAAATT---A-ATAACA-TTGTG-CAAG-TTCACATTGGT-AAAATACCAAATGAACAGC--GACGTTGGTATATT-----TATC---ATAG-------------GAATATTgt
gi|11 : tTTTTTTTCTATT---GTAG-------T----AGA-------------T-A-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCTGA-TAACTGGAGTTGTGGAT-G-AT------TA---------AGTA---TACT--------------AGT---ACTCTA--TT--CTGCT---GTGTAATTCTT-TGAC-----------------GTGCTGCTGT--ACC---AAGTATTATC--A--
gi|11 : atgaaaccagcttagcgcttttcagtactttgaTTA------------T-CATTGTG-------CA--AATGCCAAATC---AT-----AAAttgtgcaaatgccaaatcataaac
gi|12 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaAA-T-G---TCTC-TG--C----------CTCATCAG--TGTT--AAAAATACAATGTA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCT--TTCT--TTTACATGCATGCT----T---GGG-AACTTG---CACA----GTATATCA--AAATCTC-CA-AC-AAATT---ATA--ACACTGTTG-CAAGGTTCACATTGGT-AAAATc
gi|14 : TTT-------GACG-GAGATAATG--G-CT-GACAATTCTTCCGC-----GATTT--T----GAT-TGGCTGTGA----G--AAGATG-GTAA-C-TGCGTCACCCC-C-GACA--TCATGGAAG
gi|15 : tg-A-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCTAA-TAACTGAAGTTGATGAT-G-ATAC---------------AGTA---TGCTCT-GTTGAT-GAATAGTGTGGTTaga
gi|2 : --AGG-GTTGATCTAA-TAACTGGAGT-GATGATTG-ATTC-GC------------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGATTCTC--TTGACTA------------------------------------AAATGCTGCTGT--ACC---AAGTATTATT--ATTAATGAATC-GGTA----AG-A----AAC---A------ACA--GA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATAT-CTTT-TAAAAAT-ATCATC-----ATATTA-GCA-CA-AA--C-AT-A--CCTTTGTATTTAGAAGCA---TAAAAATGAGA---GGGACTC-ATAAAT--AAAT----CGGG-CC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TTA--TAGA----GGGG--ACAATA-A---TTCTA-CC--TTCAC-AA-C---C---TC--A--GCTT---C-AACA-TTATTTGAAAA-TGGATATTTTCTTTG-TTG--T--CA-TTT---TAGG-A-----CC-----CCCCC---CCCC-CCCC---CCCCA
gi|2 : CTTTAATGCATAT--T------GGCC---TGATACAT-----ACACAAT-GTTACAAATA-A-ATG-A-ACATgtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|2 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatataAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA-------AGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATTTAAATTA----CAAACTA-T---GTGTAGATTATT---ATTTCTTTATTGTATAA--ACATGTAG---CC-TGATGCAT-----ACACAA-----------T-T-A-G-ACACATCACA--TCT-TGTACAAAATTTAG-GTTACATTG---------ACATTTA-TTTATT-A--TCAC-A-GC-CCAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTCAC---G-TAGATCT----TAGATCTTATACAC-ATGTATACACATACATAATGTGCCCC---CCCCCCCTTGTTTTT------TC-----A----ACCATAACACA-AT-TTTTAGGAATCTCGGTC-ATC---TCAAACTTACAG----CAGAAACTGGCCACGCAAAGCGACTTATGACG-TGTGAAGGTGGG----------GGAA-------A------T-TAT-TG-TT---TCATTATTTAC-TTTTCAGT---GGT-TGAAGGGT-GCGTGTGT---T-------GG--------GAGGGGGGGGGGTGCAT-T-TA-TAA-GACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGTA-CTA-TTGACT-AATTG-A-A-CTGTCACAGTTAAAATTACA-TTC-AATTGATTGATAAAAC-AA-CTT---AA-TTTGAA-ACA-TGTCGATC-TG----TTTTTTTCTCCTCTTACGTTGAATATTGCACTGCAATGCTTGAAT-GGGCC-TA-GGCTA---CAGCACGT---AAACAAT----T-TTTTC--TGT-GAA--AA-T--TG-TTCT-G---AATGG-GGTGTATCT-CACTC-CT-ACTATCC-TTCTG--GG-T-C-----CGT---GTGT-CAC-T-T---ACAT-TT-CCC-CA---TGC-GCAG-GTCTTTCAC---TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCA----TT--aataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|3 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaACATTAATT--AGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAAG------CATTCC---TGTGGGGTCACAATGGAACTG-AATC----TAACTCCA--GGACCCAAGATACATTTAACCGTCAATATTTAGGGTCAAA---ACGTCA-------ACTATTTATCA-TTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA-AAT-TATAAGCAACAATTTCATGTG-ATTCCAAAATAACT-G---TCTC-TGGGCG-TCGC----CTCATCA---TGTT--AAAA--------TA-ATTTGCGAAATTC--TTTT-GT--ATG-TCC-CTCC--GTCT--TTTAC----ATATT--------GGG-AACTTGAGACACC----ATATATCA--AAATCTCTCA-ACAAC-CT---A-AGTACA-GTTTG-CAAGGTTCA----------AAT------CGAGCCT--------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCT----AGAATAT-GTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGATGAT-GGATTT-GTCTGTAGAATCGTAATA---TGCTCTTGGTGATTGAAGAGTGTGGTTCTCTGTTGA-TACTAAAATGTG--CCCCATGTCCA------------AGAG------TATTAATC---AAAC-----------AATGAATC-TGTA----AACA----AAGCGCAATCGCTACAGGGAGATAACTCTTTA------------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGATG---ACTTAAAT-T-T-TTTT-TTAACAT-CTTGTCATGTAATATTATGTACCACAACCC-CTAAC-CCATTGTATTTAGAAGCACCTAACAAAAATGAA-GGGGACTCGATAAATAGAAATTCGACGGGTTT--AATGA-TCA---GGGATGCAT--TTTCG----TGGA-----TCTATTAGACTTCTGGG--ACAATACA----TTCC-CCAGTTCACTAA-CCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAA-TGGAT-CTTCCTTCATTTG--T--CATTTT---TAGG-A-----TTTTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgTATA-A-GGACAA-GTATCCCCC---CCCCTTCT--TTTTT------Tac
gi|4 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagattACATTAATTGAATAGG-----CAAACTTT-AATT-TCATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGT----AGACCCTAGTAGTTAAATCAAGCCAAACTT----TAAAGAGAT--GATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACTC-AATTGAT--AATAGATAATGA---GTCAATA-T-AGG--CAAAGGCA----A-------A-TA-TTATCA-T-CAA-ATTGATCCAATGG-----CATAGTGTT-GA-AAT-TATAAA----AATTCTC--TGAATTCCAAAATAAGT-GGTTTCTCGTG--CGTTTGCTTCTTTCATCAG---GTT--GAAA--------TACATTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTA---GCATACT----TGAAGAA-AACTTG---CACCTCTTATA-ATCAAGAAATCTC-CAGACAAAAGTACAA-A--ACA-TGTTACCAAGGTGCAATTTGGTAAAAATATCAAAtttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttacattaattgaataggcaaactttaatttcattttatttattacaacagacatattttaaaaattacagtagaccctagtagttaaatcaagccaaactttaaagagatgattgggcatttcctttgcgggatcacaatggaactggaatcgtaacaactcaattgataatagataatgagtcaatataggcaaaggcaaatattatcatcaaattgatccaatggcatagtgttgaaattataaaaattctctgaattccaaaataagtggtttctcgtgcgtttgcttctttcatcaggttgaaatacattggcaaattctgttttgtcatgatccgctccaaatcttatttagcatacttgaagaaaacttgcacctcttataatcaagaaatctccagacaaaagtacaaaacatgttaccaaggtgcaatttggtaaaaatatcaaa
gi|5 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttTTATT-TGGTCAC-AGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT-AC---GATAG---AC---TATATCTTA-ATA--ACATATA-A-GTACAT-ACTTACCCC---C----------TTGTAAAAAACC-----AGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCAT-GCGTCAAA---AACT----TACAAACAGAAAACGCGGCCCGCCGAAAG-CGACTTAATGAAAGGTGAATGGTAGGGAA-------ATTAAAGTGCATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGT---T-------GGCGGTG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCT--CAGTCAGAAAACTTTGGCATGTA-CTAATTATCTTAATAGCAC--CTGTCACAGTT-AAATTAACTTTCTATTTGATTGATAAAACAAA-CTT---ACTTCTGAACACGTT--CGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCA--ACACTGC--CAAGGGGGCCGTACAGCTA---CAGCACGTAAGAAACAATTA--T-TTTTCTGTGT-GAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTA-GCTTTCTG--GATTAC-----CGTGTGGTGTCCAC-TGTTTAACAT-TT-CCC-CATTTTGCTGCAG-TGTTTGCACAA-TTTTCTGAGTGCGAAATTTCAAAGCAATCTTCG----TTAAAAAAACATCC-----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-G-TTT-------GACG-GAGGTCATGTAGG-C-GACAAATATTCGCC-----GGATTC-T----GAT-TGCTT-TGTTGCGG--AAGATG-GTAA-CGTCCACCTCCCCAT-GACGACACGTGGAAG
gi|6 : GTTAGCCCTCAAGTACTATCCAA--AATGAATCATGTACAGAAACACCAGAAT---A------ACGAGAA-TT-ATTTTTTATACAATCCTTTAA-TGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA-TATATCTTATAAAAAT-ATCATC-----ATATTATGCACCA-AA--A-ACAATACCTTTGAATT----AG-A---AATAAAAAAGAG-AGGGACTCCATAAAT-TAAAT----CGGG-GCCAAAT-AATCAAAGGAGATGCAAGAT---GTAATTAGAAAATACA---TAGA----AGGGGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAAC-AAAA-TAA-TTAAAAAAT---T-CTTTAT--G-TTGGATAACA-ATTATATAGG-AAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCgc
gi|6 : CTTTAT-GTATAT--TT-----GGCC---TGATGCAT-----ACACAAT-GTTACACAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|7 : gttagccctcaagtactatccaaaatgaatcatgtacagaaacaccagaataacgagaattattttttatacaatcctttaatgctatagagagatcaaatgccacatccagattgagacaaagccaattgcaacatttaggaaaatgtaacaaatatatcttataaaaatatcatcatattatgcaccaaaaacaatacctttgaattagaaataaaaaagagagggactccataaattaaatcggggccaaataatcaaaggagatgcaagatgtaattagaaaatacatagaaggggaacaataaaaaatatctaccttcaccaaaccatatcaaggcttcaacaaaataattaaaaaattctttatgttggataacaattatataggaaatactatacgacccccaaaccccaccccacaccccacccccccccaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatataCTGCAACAT-CATATGTATACAACAAATGGACCCTAA-TAATTTGGCACA------CAGAACAAT-GCTTTA--GATTATGCTTAATAGA-TTGTTATAGTGTAATAG---ATGCATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAAC-CTACTT---AAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTCTCTCTCACACACACTCATTCAGGCCCCCTGGTGTAT-----ACACA-TAGTAACACATTGT-ATGTATACATCACA--TCT--GTACAATATT-AGCG----ATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAG---AAAGATAGATCTTA-GCATTACACATA-A---------TGTCCCCC---CCCCCTTTGTTTTTT------TC-----A----ACCA-AACACACAT-TTTGTGGAATTCTCAGG-ATCATCTCAAA---ACTTACAGCAGAAACTGGCCACGC---CCAAAGC-GGACC-CTTAACGAAGCC----------GTAA-------CT----AT-CAT-TG-TT---TCATTATTTAC-TTTTCATT---GGTATAGAAGGT-GCGTGTAT---TTGGGGGAGG--ATGCGTGGaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|8 : -TGGTATTTTTTTTCTATT---GTAG-------CCGGCAGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTTAGTCTG---------AGTAATATGCTCT-GTTGAT-GAAGAGTGTGGTTCT-------------------------T-TGACTA------------AAAATGCTGCTGT--ACC---AAGTATGATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAG-A-AT-ATCTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT---TTT-T-T-TTTT-TAAATAT-ATCATC-----ATATTATGTAC-A-AA--C-ATAA--CCATTGTATTTAGAAGCA---TAAAAAAATGA---GGGACTC-ATAAAT-GAAAT----TGGG-TT--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----TGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TCATA--GCTTC--
gi|9 : cctGCACGTA--AACCAATCAACTACTTTC--TGTTGACACTT-TCCTGCTTCT-GAACAATGGAGGTATATCTC-ACTC-C--ACTATCCTTTCTGCTGG-TATGTAGACAT---GTGTC-AC-T-T---ACATATTCCCCTCA--TTGC-GCAGTGGTCTTCACAAATTTTC-AAG--CGAA--T-CAAAGCAATC-ACAATACTT--CAAAACTCCTGC-ATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCATG--G-CG-GACAATTCTCCGGCCCCCCGACTTC-CCCTGGAGGCGGCG-TGC----AGCATGATGCGTAA-C-TCCGCCTCCCC-CTGACG--ACGTGGAAGCttcttttgtttatgtttaggattct
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444444 1 11 222222 11 11 222 8888888888888888888888888888888888888888 11 2222 33333333 222 2222 22222 11 222 222 11 555555555555555555 111 1 1 3333333 1 1 1 2222 222 1 1111111 2222222222222 111 11 22222222 1 11 11 111 11 222 33333333 111 33333 11 33333333333 11 55555555 111 444444444444 55555555555555555 111 4444444444444444444444444444444444444444444444 11 111 11111 1111 1111 2222222222 33333333333333 2222222 111 11111 11 11 111 1111 11 11 222222222 22222 1111 11 1111 222 1 11 1111 11111 111 22222222222 3333333333 222222 11 1111 11 1111111 11111 111 1 1 1 1 1 1111 11111 1 111 222222222222 111 1 111 22222 1 1 11 2222 22222 11 2222 6666666666666 11 1 11 22 2222 222 5555555555 1 1 1 5555555555 222 11 11111 11 22 666666666666666666666666 22222 2222222222222222222222 11 22 1 22222 44444444 11 2222 1 1 5555555555555555555555555 1 111 1 44444444 1 11 111111111 111 22 444444444444444444 1 1 1111 2222 33333333333 111 1 777777777777777777777777777777 1 1 111 1 222 1 1 5555555555555555555 222222 1 1 11 1 1 1 1 1 333333 1 1 1 222 1 1 2222 4444444 333 222 1 222 111 111111 11 1 22222222 1 1 111 1 1 11 11 1 22222 111 1111111 1 1 1 222 1 1 111 1 111 11 1 2222 111 333333 1 1 1 1 3333333 1 3333333 22222 2222222 1 1 22222222 1 1 1 111 11
lowQualScore : 88 1 000000000000000 5 88 22 999999 88 66 111 9999999999999999999999999999999999999999 88 4444 55555555 333 0 6 7 8888 33333 88 333 888 33 888888888888888888 3 111 0 0 5555555 0 0 0 3 1111 0 777 0 9999999 8 9999999999999 111 11 99999999 8 6 99 11 8 8 88 8 222 11 666 44444444 999 444 22222 0 0 11 8 8 0 99999999999 8 8 66 8 44 0 44444444 0 444 666666666666 0 5 8 8 0 8 8 99 6 6 6 6 33333333333333333 111 6 6 5555555555555555555555555555555555555555555555 0 0 88 111 33333 8 7777 7777 8888888888 555 8 8 66666666666666 1111111 99 111 66666 0 8 11 11 8 444 8 3333 1 11 11 222222222 8 8 1 8 00000 0 8 4444 0 99 1 0 5555 1 1 444 6 33 7777 44444 8 8 444 33333333333 4444444444 111111 11 5 4444 8 11 3 8 8888888 33333 777 0 0 0 0 22 0 1111 88888 0 777 888888888888 777 0 777 1 66666 5 1 5 88 4444 1 77777 88 5555 6 7 7 0000000000000 88 3 88 00 7 2222 6 333 6 7 8888888888 3 3 3 0000000000 333 11 33333 55 7 00 555555555555555555555555 00000 9999999999999999999999 7 88 00 2 88888 00000000 99 5555 0 2 5 4444444444444444444444444 99 2 0 7 777 0 99999999 0 0 66 8 555555555 1 444 1 22 888888888888888888 0 2 0 3333 2222 11111111111 666 777 5 0 3 777777777777777777777777777777 0 5 777 0 3 1 111 0 0 3333333333333333333 999999 3 6 3 88 0 3 3 3 3 3 111111 3 7 3 7 3 333 88 3 7 2 7 8888 3333333 000 222 6 3 77 333 777 888888 33 0 33333333 0 0 000 0 3 2 99 0 33 9 3 33 0 3 55555 777 55 9999999 0 5 0 999 0 0 1 000 0 555 33 3 3 0 1111 444 111111 2 0 3 7 3 3 7 2222222 0 1111111 1 55555 1 8888888 0 0 99999999 0 0 0 888 33
lowQualScore : .. . ............... . .. .. ...... .. .. ... ........................................ .. .... ........ ... . . . .... ..... .. ... ... .. .................. . ... . . ....... . . . . .... . ... . ....... . ............. ... .. ........ . . .. .. . . .. . ... .. ... ........ ... ... ..... . . .. . . . ........... . . .. . .. . ........ . ... ............ . . . . . . . .. . . . . ................. ... . . .............................................. . . .. ... ..... . .... .... .......... ... . . .............. ....... .. ... ..... . . .. .. . ... . .... . .. .. ......... . . . . ..... . . .... . .. . . .... . . ... . .. .... ..... . . ... ........... .......... ...... .. . .... . .. . . ....... ..... ... . . . . .. . .... ..... . ... ............ ... . ... . ..... . . . .. .... . ..... .. .... . . . ............. .. . .. .. . .... . ... . . .......... . . . .......... ... .. ..... .. . .. ........................ ..... ...................... . .. .. . ..... ........ .. .... . . . ......................... .. . . . ... . ........ . . .. . ......... . ... . .. .................. . . . .... .... ........... ... ... . . . .............................. . . ... . . . ... . . ................... ...... . . . .. . . . . . . ...... . . . . . ... .. . . . . .... ....... ... ... . . .. ... ... ...... .. . ........ . . ... . . . .. . .. . . .. . . ..... ... .. ....... . . . ... . . . ... . ... .. . . . .... ... ...... . . . . . . . ....... . ....... . ..... . ....... . . ........ . . . ... ..
lowQualScore : 00 0 555555555555555 0 55 00 555555 00 55 555 0000000000000000000000000000000000000000 00 0000 00000000 333 7 7 3 3333 77777 33 333 000 88 000000000000000000 2 000 0 0 0000000 0 0 0 2 2222 2 555 0 0000000 0 8888888888888 888 00 00000000 0 0 00 00 0 0 88 0 000 00 000 00000000 444 000 00000 6 8 00 0 0 8 00000000000 0 0 00 0 00 7 77777777 8 000 888888888888 8 6 0 0 8 0 0 22 7 7 7 7 77777777777777777 777 7 7 2222222222222222222222222222222222222222222222 6 8 55 777 33333 0 0000 0000 0000000000 222 0 0 22222222222222 7777777 22 777 77777 8 0 00 00 0 000 0 0000 0 00 22 000000000 0 0 0 0 00000 8 0 0000 8 00 4 8 4444 0 4 888 0 00 0000 22222 0 0 000 22222222222 2222222222 666666 00 0 8888 0 00 8 0 0000000 00000 444 0 0 0 0 88 0 5555 55555 0 555 000000000000 555 0 555 0 00000 0 0 5 00 0000 0 00000 00 0000 7 3 3 3333333333333 33 3 33 77 3 7777 7 333 7 3 3333333333 3 3 3 3333333333 333 00 77777 77 3 00 888888888888888888888888 00000 3333333333333333333333 3 33 77 0 33333 77777777 33 0000 0 5 5 5555555555555555555555555 00 5 0 0 555 0 88888888 2 0 55 0 888888888 0 000 4 00 222222222222222222 0 5 0 0000 8888 88888888888 888 888 8 0 0 888888888888888888888888888888 0 5 555 0 2 0 555 0 0 5555555555555555555 000000 3 7 3 33 7 3 3 3 3 3 777777 3 3 3 3 3 333 33 3 3 0 3 3333 3333333 333 000 7 3 33 333 000 888888 88 0 55555555 0 0 222 0 2 5 00 0 22 2 2 88 0 2 00000 555 00 5555555 0 0 0 222 0 0 0 222 0 000 88 2 2 0 2222 888 333333 0 7 3 3 3 3 3 5555555 0 5555555 0 00000 2 5555555 0 0 22222222 0 0 0 000 88
consensus : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAAAATT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTC-GTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTC--TTGACTACT---GTGTG--CCCT-TGACCA------------AAAATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----NGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCAT-CAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
Reference ( family-2541 ) : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAAAATT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTC-GTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTC--TTGACTACT---GTGTG--CCCT-TGACCA------------AAAATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----NGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCAT-CAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
gi|1 : GCATTCC---TGTGGGGTCACAATGGAACTGGA-TC----TAACTC-A--AGAC--AAGATACATTGA---GTCAATAT--AGG--CAAA---G----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AATATA-AAA----AATTAT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-T-GC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC----ATACT----TG-GG---AACTTG---CAC-----AGATATCA--AAATCTC-CA-ACAAAGT---------ACA-TGTTG-CAAGGTTCA-ATCGGT-AAAATATCAAATAAGCCTTCAAA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTCAGTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCT---TTGACTACN---NNNNN--NNNN-NNNNNNNNNNNNNNNAACAACATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAAGA-AT-ATTTTTTA------------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT-T-T-TTTT-AAAACATAATCATC-----ATATTATGCACCA-AA--CTATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGAGGACTC-ATAAAT-GAAAT----TGGA-TC--AAT-A-TCA---GGGATGCGG--T---GC---TGGA-----TC---TAG------GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAA-TGAAT-CTTTCTTTG-TTG--T--CA-TTT---TAGGCA-----TCTTCGACCCCC---CCCC-CCCC---CCCCCCCCCCCCC
gi|1 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctaAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAA-A-----ATATGTA------ATTG-TTGTAAAAAGTTT----TATAAGTACACAA--ATTGCCCTAATGAT----TTTAATGAAAATACT-T--T-----AG---AT--ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGAT-------CCATAATT---ATTATCACCATACTA-TGTTGTAC--AT--ATG-ATTTTCGTTA-------G--TCATACAGGCC---TGATGCATGCAATACACTATAA-GACACATT-TTAT---CACATC-CAGCTCTATGTACAAAATTCAG-ATT-CATTGCAACACGCCACATTTACTTTATT-T--TCAC-AGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAC---C----TAAATCTTA-ATAC-ATATATA-A-GTACCT-CTCTCTCTCTTCCCCCCCCT--TTTTT------TTTTTTAA----ACCA-AATACACAT-TTTTTGGAATCCCNNNN-NNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN----------NNNNNNNNNNTAT----GT-CAT-TGTTT---TCATCATTTAC-GTT-CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGT-------GT--GTGTGTGGGGGGGGGGGGTGTATGTGCA-TAAGGACGTGCTAT-TCT--CAGTCAGAAA-CTATG-CATGTAACTA-TTATCT-AATA-CACAGCTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTTG----TTTTTCTCT-------CGTTGTATATTGCA----ACTGC--AAATGGGGCC-TACAGCTATTACAGCACGCA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GA-TAC-----CGT---GTGTCCATGT-T---ACAT-TTCCCC-CA---TGC-GCAG-GTTTTTCACAA-TTTTC-AA--GCGAA--TTCAAAGC-ATT-TCG----TT--TAAAACATCTGCAA-CTAAACACCTCCACG-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGGACAATTCTCCCGC-----GATTTCGT----GAT-TGGCT-TGC----G--AAGATG-GTAACC-TCCACCTCCCC-T-GACG--ACATGGAAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcttgcagtcaattgaatatgtgcatgtgtttgtgcgtctggcaggtaacattgtcaaaagagatcaaaaccctgcaaaatatgtaattgttgtaaaaagttttataagtacacaaattgccctaatgattttaatgaaaatactttagatatgccatagcaaaaataatgtaaaagtcgatctgatccataattattatcaccatactatgttgtacatatgattttcgttagtcatacaggcctgatgcatgcaatacactataagacacattttatcacatccagctctatgtacaaaattcagattcattgcaacacgccacatttactttattttcacagacatcagaagtatgtaataggaggttatcgtatacgttacgtacctaaatcttaatacatatataagtacctctctctctcttccccccccttttttttttttaaaccaaatacacattttttggaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtcattgttttcatcatttacgttcaatttaggttgaagggtgcgtgtgtgtgtgtgtgtgtggggggggggggtgtatgtgcataaggacgtgctattctcagtcagaaactatgcatgtaactattatctaatacacagctgtcacagttaaattacatttcatttgattgataaaacaaaacttcacatttttgaaacgttatcgatcttgtttttctctcgttgtatattgcaactgcaaatggggcctacagctattacagcacgcaaaacaattatttttctgtgacttttgttctgaaaatggggtaatcttcactcctactagcctttctggataccgtgtgtccatgttacatttcccccatgcgcaggtttttcacaattttcaagcgaattcaaagcatttcgtttaaaacatctgcaactaaacacctccacgcatgtgcaccatcggtgttttgacggaggtcatgggccggacaattctcccgcgatttcgtgattggcttgcgaagatggtaacctccacctcccctgacgacatggaagcgt
gi|10 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctagcattcctgtggggtcacaatggaactggatctaactcaagacaagatacattgagtcaatataggcaaagaatatttatcatcaaattgatcaatgcatagtgttgaaatataaaaaattattgattccaaaataatgtctctgcgtgcctcatcagtgttaaaataattgcaattcttttgtcatgtccctccttcttttacatacttgggaacttgcacagatatcaaaatctccaacaaagtacatgttgcaaggttcaatcggtaaaatatcaaataagccttcaaagtggtattttttttctattgtagtagaatattgtttttggtaaaaagggatagcttgttgatagggttgatctaataactggagttgatgatgattcagtctgagtatgctctgttgatgaagagtgtggttctttgactacnnnnnnnnnnnnnnnnnnnnnnnnnaacaacatgctgctgttaaccaagtattatcaaatgaatctgtaaacaaagaacaaagaatattttttaagtattgtgcaaatgccaaatcattaatggacaaagcatgcacattaagtaagatacaacaatttttttaaaacataatcatcatattatgcaccaaactataaccattgtatttagaagcaaaaaaaaaaaaatgaggactcataaatgaaattggatcaatatcagggatgcggtgctggatctaggggacaatacatttccccttcactaacctcagctttcaaacattattaaaaatgaatctttctttgttgtcattttaggcatcttcgaccccccccccccccccccccccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGG--CAAA---A----ATATATATA-TATTTATCAAT-CAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAA-TATAAA----AATTCT---TG-ATTTCCAAATAA-TTG---TCT-------G-GCGC----CTCATCAGGATATTTAAAAA--------TA-ATT-GC--AATTC--TTTTAGTGCATG--CC-CTCT--TTCT--TTTAC--CCCCACTGCTCTG-GGGGGAACTTG---CAC-----AGATAC----AAATCTC-CA-ACAAAATT---A-ATAACA-TTGTG-CAAG-TTCACATTGGT-AAAATACCAAATGAACAGC--GACGTTGGTATATT-----TATC---ATAG-------------GAATATTgt
gi|11 : tTTTTTTTCTATT---GTAG-------T----AGA-------------T-A-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCTGA-TAACTGGAGTTGTGGAT-G-AT------TA---------AGTA---TACT--------------AGT---ACTCTA--TT--CTGCT---GTGTAATTCTT-TGAC-----------------GTGCTGCTGT--ACC---AAGTATTATC--A--
gi|11 : atgaaaccagcttagcgcttttcagtactttgaTTA------------T-CATTGTG-------CA--AATGCCAAATC---AT-----AAAttgtgcaaatgccaaatcataaac
gi|12 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaAA-T-G---TCTC-TG--C----------CTCATCAG--TGTT--AAAAATACAATGTA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCT--TTCT--TTTACATGCATGCT----T---GGG-AACTTG---CACA----GTATATCA--AAATCTC-CA-AC-AAATT---ATA--ACACTGTTG-CAAGGTTCACATTGGT-AAAATc
gi|14 : TTT-------GACG-GAGATAATG--G-CT-GACAATTCTTCCGC-----GATTT--T----GAT-TGGCTGTGA----G--AAGATG-GTAA-C-TGCGTCACCCC-C-GACA--TCATGGAAG
gi|15 : tg-A-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCTAA-TAACTGAAGTTGATGAT-G-ATAC---------------AGTA---TGCTCT-GTTGAT-GAATAGTGTGGTTaga
gi|2 : --AGG-GTTGATCTAA-TAACTGGAGT-GATGATTG-ATTC-GC------------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGATTCTC--TTGACTA------------------------------------AAATGCTGCTGT--ACC---AAGTATTATT--ATTAATGAATC-GGTA----AG-A----AAC---A------ACA--GA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATAT-CTTT-TAAAAAT-ATCATC-----ATATTA-GCA-CA-AA--C-AT-A--CCTTTGTATTTAGAAGCA---TAAAAATGAGA---GGGACTC-ATAAAT--AAAT----CGGG-CC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TTA--TAGA----GGGG--ACAATA-A---TTCTA-CC--TTCAC-AA-C---C---TC--A--GCTT---C-AACA-TTATTTGAAAA-TGGATATTTTCTTTG-TTG--T--CA-TTT---TAGG-A-----CC-----CCCCC---CCCC-CCCC---CCCCA
gi|2 : CTTTAATGCATAT--T------GGCC---TGATACAT-----ACACAAT-GTTACAAATA-A-ATG-A-ACATgtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|2 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatataAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA-------AGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATTTAAATTA----CAAACTA-T---GTGTAGATTATT---ATTTCTTTATTGTATAA--ACATGTAG---CC-TGATGCAT-----ACACAA-----------T-T-A-G-ACACATCACA--TCT-TGTACAAAATTTAG-GTTACATTG---------ACATTTA-TTTATT-A--TCAC-A-GC-CCAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTCAC---G-TAGATCT----TAGATCTTATACAC-ATGTATACACATACATAATGTGCCCC---CCCCCCCTTGTTTTT------TC-----A----ACCATAACACA-AT-TTTTAGGAATCTCGGTC-ATC---TCAAACTTACAG----CAGAAACTGGCCACGCAAAGCGACTTATGACG-TGTGAAGGTGGG----------GGAA-------A------T-TAT-TG-TT---TCATTATTTAC-TTTTCAGT---GGT-TGAAGGGT-GCGTGTGT---T-------GG--------GAGGGGGGGGGGTGCAT-T-TA-TAA-GACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGTA-CTA-TTGACT-AATTG-A-A-CTGTCACAGTTAAAATTACA-TTC-AATTGATTGATAAAAC-AA-CTT---AA-TTTGAA-ACA-TGTCGATC-TG----TTTTTTTCTCCTCTTACGTTGAATATTGCACTGCAATGCTTGAAT-GGGCC-TA-GGCTA---CAGCACGT---AAACAAT----T-TTTTC--TGT-GAA--AA-T--TG-TTCT-G---AATGG-GGTGTATCT-CACTC-CT-ACTATCC-TTCTG--GG-T-C-----CGT---GTGT-CAC-T-T---ACAT-TT-CCC-CA---TGC-GCAG-GTCTTTCAC---TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCA----TT--aataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|3 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaACATTAATT--AGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAAG------CATTCC---TGTGGGGTCACAATGGAACTG-AATC----TAACTCCA--GGACCCAAGATACATTTAACCGTCAATATTTAGGGTCAAA---ACGTCA-------ACTATTTATCA-TTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA-AAT-TATAAGCAACAATTTCATGTG-ATTCCAAAATAACT-G---TCTC-TGGGCG-TCGC----CTCATCA---TGTT--AAAA--------TA-ATTTGCGAAATTC--TTTT-GT--ATG-TCC-CTCC--GTCT--TTTAC----ATATT--------GGG-AACTTGAGACACC----ATATATCA--AAATCTCTCA-ACAAC-CT---A-AGTACA-GTTTG-CAAGGTTCA----------AAT------CGAGCCT--------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCT----AGAATAT-GTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGATGAT-GGATTT-GTCTGTAGAATCGTAATA---TGCTCTTGGTGATTGAAGAGTGTGGTTCTCTGTTGA-TACTAAAATGTG--CCCCATGTCCA------------AGAG------TATTAATC---AAAC-----------AATGAATC-TGTA----AACA----AAGCGCAATCGCTACAGGGAGATAACTCTTTA------------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGATG---ACTTAAAT-T-T-TTTT-TTAACAT-CTTGTCATGTAATATTATGTACCACAACCC-CTAAC-CCATTGTATTTAGAAGCACCTAACAAAAATGAA-GGGGACTCGATAAATAGAAATTCGACGGGTTT--AATGA-TCA---GGGATGCAT--TTTCG----TGGA-----TCTATTAGACTTCTGGG--ACAATACA----TTCC-CCAGTTCACTAA-CCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAA-TGGAT-CTTCCTTCATTTG--T--CATTTT---TAGG-A-----TTTTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgTATA-A-GGACAA-GTATCCCCC---CCCCTTCT--TTTTT------Tac
gi|4 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagattACATTAATTGAATAGG-----CAAACTTT-AATT-TCATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGT----AGACCCTAGTAGTTAAATCAAGCCAAACTT----TAAAGAGAT--GATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACTC-AATTGAT--AATAGATAATGA---GTCAATA-T-AGG--CAAAGGCA----A-------A-TA-TTATCA-T-CAA-ATTGATCCAATGG-----CATAGTGTT-GA-AAT-TATAAA----AATTCTC--TGAATTCCAAAATAAGT-GGTTTCTCGTG--CGTTTGCTTCTTTCATCAG---GTT--GAAA--------TACATTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTA---GCATACT----TGAAGAA-AACTTG---CACCTCTTATA-ATCAAGAAATCTC-CAGACAAAAGTACAA-A--ACA-TGTTACCAAGGTGCAATTTGGTAAAAATATCAAAtttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttacattaattgaataggcaaactttaatttcattttatttattacaacagacatattttaaaaattacagtagaccctagtagttaaatcaagccaaactttaaagagatgattgggcatttcctttgcgggatcacaatggaactggaatcgtaacaactcaattgataatagataatgagtcaatataggcaaaggcaaatattatcatcaaattgatccaatggcatagtgttgaaattataaaaattctctgaattccaaaataagtggtttctcgtgcgtttgcttctttcatcaggttgaaatacattggcaaattctgttttgtcatgatccgctccaaatcttatttagcatacttgaagaaaacttgcacctcttataatcaagaaatctccagacaaaagtacaaaacatgttaccaaggtgcaatttggtaaaaatatcaaa
gi|5 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttTTATT-TGGTCAC-AGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT-AC---GATAG---AC---TATATCTTA-ATA--ACATATA-A-GTACAT-ACTTACCCC---C----------TTGTAAAAAACC-----AGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCAT-GCGTCAAA---AACT----TACAAACAGAAAACGCGGCCCGCCGAAAG-CGACTTAATGAAAGGTGAATGGTAGGGAA-------ATTAAAGTGCATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGT---T-------GGCGGTG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCT--CAGTCAGAAAACTTTGGCATGTA-CTAATTATCTTAATAGCAC--CTGTCACAGTT-AAATTAACTTTCTATTTGATTGATAAAACAAA-CTT---ACTTCTGAACACGTT--CGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCA--ACACTGC--CAAGGGGGCCGTACAGCTA---CAGCACGTAAGAAACAATTA--T-TTTTCTGTGT-GAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTA-GCTTTCTG--GATTAC-----CGTGTGGTGTCCAC-TGTTTAACAT-TT-CCC-CATTTTGCTGCAG-TGTTTGCACAA-TTTTCTGAGTGCGAAATTTCAAAGCAATCTTCG----TTAAAAAAACATCC-----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-G-TTT-------GACG-GAGGTCATGTAGG-C-GACAAATATTCGCC-----GGATTC-T----GAT-TGCTT-TGTTGCGG--AAGATG-GTAA-CGTCCACCTCCCCAT-GACGACACGTGGAAG
gi|6 : GTTAGCCCTCAAGTACTATCCAA--AATGAATCATGTACAGAAACACCAGAAT---A------ACGAGAA-TT-ATTTTTTATACAATCCTTTAA-TGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA-TATATCTTATAAAAAT-ATCATC-----ATATTATGCACCA-AA--A-ACAATACCTTTGAATT----AG-A---AATAAAAAAGAG-AGGGACTCCATAAAT-TAAAT----CGGG-GCCAAAT-AATCAAAGGAGATGCAAGAT---GTAATTAGAAAATACA---TAGA----AGGGGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAAC-AAAA-TAA-TTAAAAAAT---T-CTTTAT--G-TTGGATAACA-ATTATATAGG-AAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCgc
gi|6 : CTTTAT-GTATAT--TT-----GGCC---TGATGCAT-----ACACAAT-GTTACACAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|7 : gttagccctcaagtactatccaaaatgaatcatgtacagaaacaccagaataacgagaattattttttatacaatcctttaatgctatagagagatcaaatgccacatccagattgagacaaagccaattgcaacatttaggaaaatgtaacaaatatatcttataaaaatatcatcatattatgcaccaaaaacaatacctttgaattagaaataaaaaagagagggactccataaattaaatcggggccaaataatcaaaggagatgcaagatgtaattagaaaatacatagaaggggaacaataaaaaatatctaccttcaccaaaccatatcaaggcttcaacaaaataattaaaaaattctttatgttggataacaattatataggaaatactatacgacccccaaaccccaccccacaccccacccccccccaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatataCTGCAACAT-CATATGTATACAACAAATGGACCCTAA-TAATTTGGCACA------CAGAACAAT-GCTTTA--GATTATGCTTAATAGA-TTGTTATAGTGTAATAG---ATGCATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAAC-CTACTT---AAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTCTCTCTCACACACACTCATTCAGGCCCCCTGGTGTAT-----ACACA-TAGTAACACATTGT-ATGTATACATCACA--TCT--GTACAATATT-AGCG----ATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAG---AAAGATAGATCTTA-GCATTACACATA-A---------TGTCCCCC---CCCCCTTTGTTTTTT------TC-----A----ACCA-AACACACAT-TTTGTGGAATTCTCAGG-ATCATCTCAAA---ACTTACAGCAGAAACTGGCCACGC---CCAAAGC-GGACC-CTTAACGAAGCC----------GTAA-------CT----AT-CAT-TG-TT---TCATTATTTAC-TTTTCATT---GGTATAGAAGGT-GCGTGTAT---TTGGGGGAGG--ATGCGTGGaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|8 : -TGGTATTTTTTTTCTATT---GTAG-------CCGGCAGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTTAGTCTG---------AGTAATATGCTCT-GTTGAT-GAAGAGTGTGGTTCT-------------------------T-TGACTA------------AAAATGCTGCTGT--ACC---AAGTATGATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAG-A-AT-ATCTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT---TTT-T-T-TTTT-TAAATAT-ATCATC-----ATATTATGTAC-A-AA--C-ATAA--CCATTGTATTTAGAAGCA---TAAAAAAATGA---GGGACTC-ATAAAT-GAAAT----TGGG-TT--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----TGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TCATA--GCTTC--
gi|9 : cctGCACGTA--AACCAATCAACTACTTTC--TGTTGACACTT-TCCTGCTTCT-GAACAATGGAGGTATATCTC-ACTC-C--ACTATCCTTTCTGCTGG-TATGTAGACAT---GTGTC-AC-T-T---ACATATTCCCCTCA--TTGC-GCAGTGGTCTTCACAAATTTTC-AAG--CGAA--T-CAAAGCAATC-ACAATACTT--CAAAACTCCTGC-ATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCATG--G-CG-GACAATTCTCCGGCCCCCCGACTTC-CCCTGGAGGCGGCG-TGC----AGCATGATGCGTAA-C-TCCGCCTCCCC-CTGACG--ACGTGGAAGCttcttttgtttatgtttaggattct
blockSeqs : GA T GCAAACTTT . TT TA TACAAC . T AAT AGTAGACCCTAGTAGTTAAATCAAG AC . GATTGG CTT G A GTAA AATT CC ACC TTT GT AATATATATA T AT C C GTTTTA T C . T CAAC ATG A GTGGTT G CGTTTGCTTCT GAT TA ATACAATG C T GA TG A G AT G AAA TA ATG GCTCTGG GGG AGA CTCTT AG T G AGTACAAA C C CA A AC CGACGT CTG CCCGGGCT T T T T C TA C A T G TTGTCTGTAGAATCGT ATA T T CTGTTGATACTAAAATGTGCCCCATGTCCAA TA CTC ATT A CAGA CCAG CGCAATCGCT GGG G A TACAATCCTTTAA GAGAGAT AT CAG AGTGG C GT CA T TCA A CTA A TT CT TTAAATT A A A . ATGTA C CCC TA T CCTA A A AG G AG TCGA GCCA G A AAG GATGTAAT AAATACA ACTTCT GA C AAAT A AG T A CCTC AAG CAA . T T A GG A TCAT GATAA T ATA AAATACTATAC AAA A ACA A . . A T GA GATA C . . ATA C A A GGCACAC CA . . TA A ATAG G ATC G T AGAGCAAACA . A A ATGCAAACC TAA TT ATGTC AG T GG TCACACACACTCATTCAGGCCCCC . TAGTAACACATTGTATGTAT A . T T GTTA CCAT A TGG C G A ATGCTACCCAGCTGGAA AT C G C AAC A AAAGA T TT C CATACATAA G . C TG AAAAAACCAGAAA T C A CGTC CATC ACTTACAG AAA TAT A A A TGAATGGTAGGGAAATTAAAGTG C T CAT G T G TTA A T TTGGGGGAGGATGC CATT A G G CG A G . A T GCAC A T T A . . CT C T G T GGGG CCTCTTA CTG TTG G G CA . AAG CAACTA TG T ACTTTCC C G AAC A T C CC G TC T T CT T A GTAGA GTG CC TGTTTA A C T TTT T T T AAA T GTG AT T A T ATAC AAA TGCAT G T T T C T CATATAG C TAGGC C CCCCC T CCCCTG G G TTGCGG C . G AT AC
blockSeqs : . . A . CAG . . T . ACGTCAAC T TT . . TG . . . T . C . TTG . GGCGTCGC T . . . G A . . . T . T . C TGAA GG . A . . . ATTAATA . . CA . AT . . CCGGC T . . . . . . . . . TTAGTCTG . . . ATTCTGCTGTGTAATTCTTTGAC TA . CAA . . . A AGA . . T . . . . . . . . . . TT T . T AATATA . . C . . . C C A T C T GA C T . TTT . . . TTTCG TCTAT AG . A T . . C . CATA ATA T . . . . GG . TTG T . . ATTTTT . . . CAT C A . TA . . . A . T G . G . . . . . CG . . T GA T . TTGTATAAACATGTAGCC . ATGTTACAAATAAATGA A . . . CG . T AC . G . TATGTACCCAGG GG C . T . . ATCT . C . GGACAAG A . T GT TCA . C . GTC GCG CTTACAG GGC AAA A . T GTAACTAT . . . . T T . . . TGGCGGTG G . . . . . . . . . GAA . . . . . . A . . . . . . A C . . G . A TAT . . TTGT . . AA . T C C . T T T . . A . . C TT . . . T . . G AA . GG . T A . . C C . . . . . . . . GCT G . A CT . . CAGC . . . CT .
blockSeqs : . GGCAAA . T . . GG . . . T . . . CTG . GGCGC T . . . . . . . . T . T . G T GG . C . . . ATTATA . . AT . . . T . . . . . . . . . . TCGC . . . CTTGACTA . . A . . . A AG . . A . . . . . . . . . . T G . C AAATA . . A . . . A . T A T A . . G . CC . . . TGC TTA AA . C T . . T . C A C . . . . . . G T . . ACC . . . ATGCATATTGGCC . ATTAGAC A . . . TAATGGTAACT . . . . . . AC . . . GTACATA T . T . TCA . . . AGG C AACT . CG . . C GGAAAT . . . . T T . . . TGG . T . . AAT . . . . T . C . . . . . . . . . C TT . . . . . . G . . G . . A . . . . GCG G . C T . . AG . . . C .
blockSeqs : TG . C . . . . . . . . . . . G . . . AA . . . . . CTAAGT . . . . . . . . . . . . . . . . TA . . . TTGACTAA . . A . . . A G . . A . . . . . . . . . . T T . . TTTT . . T . . . C . A T A T . . . . TT . . . TGC TC AT . . . . . . . C A . TGTATATTTGGCC . . . G . . .
blockSeqs : . . . . . AC . . . . . . A . . . .
blockSeqCons : NTG**** GCGC********* *** TGG***** GG* ***** ANTAANA**** CA C*********** TTGCCNN********** TTGACTA*************************************** ** A**** A************* C*** GG* TCA******* AN**** TCGCATATTCGGCC********** ***** ***
originalCons : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAA-T-G---TCTC-TG--CG-TCGC----CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC--GCATACT----TG-GGGG-AACTTG---CACC----ATATATCA--AAATCTC-CA-ACAAAATT---A-A--ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAG-------T----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTC-GTCTG---------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTC--TTGACTACT---GTGTG--CCCT-TGACCA------------AAAATGCTGCTGTTAACC---AAGTATTATC--A--AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAA-GGGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGA-----TC---TAGA----NGGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATAN--TCAT-CAGGCCCC-TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
finalCons : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AAT-TATAAA----AATTCT---TG-ATTCCAAAATAANTG----TCTC-TGGCGC---------CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTAC---CATACTTGG-----GGG-AACTTG---CAC-----ATATATCA--AAATCTC-CA-ACAAAANTAANA----ACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAGC-----------AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATTTGCCNN----------AGTA---TGCTCT-GTTGAT-GAAGAGTGTGGTTCTTTGACTA---------------------------------------AAATGCTGCTGT--ACC---AAGTATTATCA----AATGAATC-TGTA----AACA----AAG---A------ACAAGGA-AT-ATTTTTTAA-------------TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AAC---ATAA--CCATTGTATTTAGAAGCA---AAAAAAAAAGAGG-GGGACTC-ATAAAT-GAAAT----CGGG-TC--AAT-A-TCA---GGGATGCAG--T---GC---TGGATCA-------TAGAN----GGG--ACAATACA---TTTCC-CC--TTCACTAA-C---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAA-TGGAT-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTATCGCATATTCGGCC----------TGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 11 444444444444444 1 11 222222 11 11 222 8888888888888888888888888888888888888888 11 2222 33333333 222 2222 22222 11 222 222 11 555555555555555555 111 1 1 3333333 1 1 1 2222 222 1 4444444444444444444 111 11 22222222 1 11 11 111 11 55555555555555555555 111 22222 11 22222222 11 55555555 111 44444444 6666666666666666666 111 22222 1111 11111 111 1111 1111 1111 000000000000000000000000000000000000000 33333333333333 2222222 111 11111 11 11 111 1111 11 11 222222222 22222 1 111111111 11111 111 11 1111 11111 1 111 222222222 111 22222 222222 11 111 11 11 1111111 11111 111 1 1 1 111 1111 11111 1 111 222222222222 111 1 111 22222 1 1 11 2222 22222 11 2222 6666666666666 11 1 11 22 2222 222 5555555555 1 1 1 5555555555 222 11 11111 11 22 111 44444444444444444444 22222 2222222222222222222222 11 22 1 22222 44444444 11 2222 1 1 5555555555555555555555555 1 111 1 44444444 1 11 111111111 111 22 444444444444444444 1 1 1111 2222 33333333333 111 1 777777777777777777777777777777 1 1 111 1 222 1 1 5555555555555555555 222222 1 1 11 1 1 1 1 1 333333 1 1 1 222 1 1 2222 4444444 333 222 1 222 111 111111 11 1 22222222 1 1 111 1 1 11 11 1 22222 111 1111111 1 1 1 222 1 1 111 1 111 11 1 2222 111 333333 1 1 1 1 3333333 1 3333333 22222 2222222 1 1 22222222 1 1 1 111 11
lowQualScore : 88 1 000000000000000 5 88 22 999999 88 66 111 9999999999999999999999999999999999999999 88 4444 55555555 333 0 6 7 8888 33333 88 333 888 33 888888888888888888 3 111 0 0 5555555 0 0 9 0 1111 0 777 0 8 8 0 6666666666666666666 111 11 99999999 8 6 99 11 8 8 88 8 222 11 00000000000000000000 444 88888 88 0 11 8 8 77777777 8 8 66 8 44 0 44444444 0 444 99999999 0 5 8 8 0 8 8 99 6 6 6 6 6666666666666666666 111 6 99 6 8 00000 88 0 2 7777 2 99 6 11111 444 8 7777 8 7777 7777 666666666666666666666666666666666666666 8 8 66666666666666 1111111 99 111 66666 0 8 11 11 8 444 8 3333 1 11 11 222222222 8 8 1 8 00000 0 0 8 555555555 8 1 0 0 55555 6 6 555 8 8 33 7777 44444 6 444 555555555 3 444 77777 111111 11 444 5 0 8 11 11 8888888 33333 777 0 0 0 3 0 111 1111 88888 0 777 888888888888 777 0 777 1 66666 5 1 5 88 4444 1 77777 88 5555 6 7 7 0000000000000 88 3 88 00 7 2222 6 333 6 7 8888888888 3 3 3 0000000000 333 11 33333 55 7 00 000 77777777777777777777 00000 9999999999999999999999 7 88 00 2 88888 00000000 99 5555 0 2 5 4444444444444444444444444 99 2 0 7 777 0 99999999 0 0 66 8 555555555 1 444 1 22 888888888888888888 0 2 0 3333 2222 11111111111 666 777 5 0 3 777777777777777777777777777777 0 5 777 0 3 1 111 0 0 3333333333333333333 999999 3 6 3 88 0 3 3 3 3 3 111111 3 7 3 7 3 333 88 3 7 2 7 8888 3333333 000 222 6 3 77 333 777 888888 33 0 33333333 0 0 000 0 3 2 99 0 33 9 3 33 0 3 55555 777 55 9999999 0 5 0 999 0 0 1 000 0 555 33 3 3 0 1111 444 111111 2 0 3 7 3 3 7 2222222 0 1111111 1 55555 1 8888888 0 0 99999999 0 0 0 888 33
lowQualScore : .. . ............... . .. .. ...... .. .. ... ........................................ .. .... ........ ... . . . .... ..... .. ... ... .. .................. . ... . . ....... . . . . .... . ... . . . . ................... ... .. ........ . . .. .. . . .. . ... .. .................... ... ..... .. . .. . . ........ . . .. . .. . ........ . ... ........ . . . . . . . .. . . . . ................... ... . .. . . ..... .. . . .... . .. . ..... ... . .... . .... .... ....................................... . . .............. ....... .. ... ..... . . .. .. . ... . .... . .. .. ......... . . . . ..... . . . ......... . . . . ..... . . ... . . .. .... ..... . ... ......... . ... ..... ...... .. ... . . . .. .. ....... ..... ... . . . . . ... .... ..... . ... ............ ... . ... . ..... . . . .. .... . ..... .. .... . . . ............. .. . .. .. . .... . ... . . .......... . . . .......... ... .. ..... .. . .. ... .................... ..... ...................... . .. .. . ..... ........ .. .... . . . ......................... .. . . . ... . ........ . . .. . ......... . ... . .. .................. . . . .... .... ........... ... ... . . . .............................. . . ... . . . ... . . ................... ...... . . . .. . . . . . . ...... . . . . . ... .. . . . . .... ....... ... ... . . .. ... ... ...... .. . ........ . . ... . . . .. . .. . . .. . . ..... ... .. ....... . . . ... . . . ... . ... .. . . . .... ... ...... . . . . . . . ....... . ....... . ..... . ....... . . ........ . . . ... ..
lowQualScore : 00 0 555555555555555 0 55 00 555555 00 55 555 0000000000000000000000000000000000000000 00 0000 00000000 333 7 7 3 3333 77777 33 333 000 88 000000000000000000 2 000 0 0 0000000 0 0 8 0 2222 2 555 0 8 0 8 4444444444444444444 888 00 00000000 0 0 00 00 0 0 88 0 000 00 22222222222222222222 000 00000 66 8 00 0 0 88888888 0 0 00 0 00 7 77777777 8 000 44444444 8 6 0 0 8 0 0 22 7 7 7 7 7777777777777777777 777 7 22 7 0 00000 88 6 2 0000 8 22 7 00000 000 0 0000 0 0000 0000 000000000000000000000000000000000000000 0 0 22222222222222 7777777 22 777 77777 8 0 00 00 0 000 0 0000 0 00 22 000000000 0 0 0 0 00000 8 0 0 666666666 0 4 8 8 88888 2 6 888 0 0 00 0000 22222 0 000 000000000 2 000 88888 666666 00 000 0 8 0 00 88 0000000 00000 444 0 0 0 2 2 000 5555 55555 0 555 000000000000 555 0 555 0 00000 0 0 5 00 0000 0 00000 00 0000 7 3 3 3333333333333 33 3 33 77 3 7777 7 333 7 3 3333333333 3 3 3 3333333333 333 00 77777 77 3 00 666 22222222222222222222 00000 3333333333333333333333 3 33 77 0 33333 77777777 33 0000 0 5 5 5555555555555555555555555 00 5 0 0 555 0 88888888 2 0 55 0 888888888 0 000 4 00 222222222222222222 0 5 0 0000 8888 88888888888 888 888 8 0 0 888888888888888888888888888888 0 5 555 0 2 0 555 0 0 5555555555555555555 000000 3 7 3 33 7 3 3 3 3 3 777777 3 3 3 3 3 333 33 3 3 0 3 3333 3333333 333 000 7 3 33 333 000 888888 88 0 55555555 0 0 222 0 2 5 00 0 22 2 2 88 0 2 00000 555 00 5555555 0 0 0 222 0 0 0 222 0 000 88 2 2 0 2222 888 333333 0 7 3 3 3 3 3 5555555 0 5555555 0 00000 2 5555555 0 0 22222222 0 0 0 000 88
consensus : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AATTAT-AAA----AATTCT---TG-ATTCCAAAATAANT-GTCTCTG-G----CGC----------CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTA---C---CA-TACTT--G--GGGAACTTG---CACC----A-TATATCA--AAATCTC-CA-ACAAAATTA-ANAACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAGCC-G----AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATT---C-GTCTG---------AG---TATGCTCT-GT--TGAT-GAAGAGTGTGGTTCT-TTG-----ACT-AAAATGCTGC----TGTACCAAG--TATTA-TC--A--AA---TGA-AT----C-TGTA----AACA----AAG--------------------A------ACA-------AGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---AANAAAAATGAG-GGGGACT-C-ATAAAT-GAAAT----CGGG-TC--AAT-ATCA---GGGATGCA----GT---GCTGG---AT-C-A-TAGA----NGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGA-T-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTA-TCGTAT----A------TTCGG----CCTGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
Reference ( family-2541 ) : ACATTAATTGAANAGNGCGGCCAAACTTTTAATTGTCATTTTATTNNTTACAACAGACAAGCATNATTAAAAATTACCTCGTAGACTTAGTATTCAGACCCTAGTAGTTAAATCAAGCCAAACTTTAGATAAAGAGATAAGATTGGGCATTCC---TGCGGGGTCACAATGGAACTGGAATC----TAACTC-A--NGAC--AAGATACATTGA---GTCAATATT-AGG--CAAA---A----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AATTAT-AAA----AATTCT---TG-ATTCCAAAATAANT-GTCTCTG-G----CGC----------CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTA---C---CA-TACTT--G-GGGGAACTTG---CAC-----A-TATATCA--AAATCTC-CA-ACAAAANTA-ANAACA-TGTTG-CAAGGTTCACATTGGT-AAAATATCAAACGAGCCTC--GA-G-TGGTATTTTTTTTCTATT---GTAGC-------AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATT---T-GCCNN---------AG---TATGCTCT-GT--TGAT-GAAGAGTGTGGTTCT-TTG-----ACT-AAAATGCTGC----TGTACCAAG--TATTA-TC--A--AA---TGA-AT----C-TGTA----AACA----AAG--------------------A------ACA-------AGGA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATGC-AAC---AAT-TAT-TTTT-TAAANAT-ATCATC-----ATATTATGCACCA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAGAG-GGGGACT-C-ATAAAT-GAAAT----CGGG-TC--AAT-ATCA---GGGATGCA----GT---GCTGG---AT-C-A-TAGA----NGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTC--C-AACA-TTA-TTAAAAATGGA-T-CTTTCTTCG-TTG--T--CA-TTT---TAGG-A-----TCTTCGACCCCC---CCCC-CCCC---CCCCACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTTGCAGTCAANTGAATATGTGCATGTGTTTGTGCGTNTGTGCAGGTAAGACATGATATNTCAAAAGAGACCAAAACCCTGCAA-AT-CATATATGTACAACAAATTGACCCTAAATAATTT----TA------CAGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAG---ATGCATGCCATAG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATT---ATTATCACCAAACTA-TGTCGTGCGGATTAATG-AATTTCTTTA-TCGCAT----A------TTCGG----CCTGATGCAT-----ACACAATAGTNACACATT-T-ATG-ACACATCACA--TCT-TGTACAAAATTCAG-GTT-CATTGC----CGCCACATTTACTTTATT-T--TCAC-AGGCACCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAG---N----TAGATCTTA-ACAC-ACATATA-A-GTACAT-ATNTCCCCC---CCCCCCCT--TTTTT------TC-----A----ACCA-AACACACAT-TTTTTGGAATCCCCGGN-ATCGCGTCAAA---ACNT----CAGAAACTGGCCACGCGGNCCGACGNANGACG-CTTAACGAAGGG----------GGAA-------AT----GT-CAT-TGTTT---TCATTATTTAC-TTTTCANTTTAGGT-TGAAGGGT-GCGTGTGT---T-------GG--GTGCGTGGGGGGGGGGGGTGCAT-TGCA-TAAGGACGTGCTAT-TCT--CGGTCAGAAA-CTATG-CATGTA-CTA-TTATCT-AATAGCACA-CTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAA-CTT---ANTTTTGAA-ACGTTGTCGATCTTG----TTTTTCTCT-------CGTTGAATATTGCA--GCACTGC--GAATGGGGCC-TACGGCTA---CAGCACGTA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTATATCTCCACTC-CT-ACTATCCTTTCTG--GG-TAC-----CGT---GTGTCCAC-T-T---ACAT-TTCCCC-CA--TTGC-GCAG-GNTTTTCACAA-TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCG----TT--NAAAACATCCGC-A-CTTAACGCCTCCGCC-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCC-GACAATTCTCCNGC-----GATTTC-T----GAT-TGGCT-TGC----G--AAGATG-GTAA-C-TCCGCCTCCCC-C-GACG--ACGTGGAAGC
gi|1 : GCATTCC---TGTGGGGTCACAATGGAACTGGA-TC----TAACTC-A--AGAC--AAGATACATTGA---GTCAATAT--AGG--CAAA---G----A-------A-TATTTATCA-T-CAA-ATTGAT-CAAT-G-----CATAGTGTT-GA-AA-TATAAAA----AATTAT---TG-ATTCCAAAATAA-T-GTCTCTGCG----TGC----------CTCATCAG--TGTT--AAAA--------TA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCC--TTCT--TTTA-------CA-TACTT-----GGGAACTTG---CAC-----A-GATATCA--AAATCTC-CA-ACAAAGT------ACA-TGTTG-CAAGGTTCA-ATCGGT-AAAATATCAAATAAGCCTTCAAA-G-TGGTATTTTTTTTCTATT---GTAGT-------AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATT---CAGTCTG---------AG---TATGCTCT-GT--TGAT-GAAGAGTGTGGTTCT-TTG-----ACT-ACNNNNNNNN----NNNNNNNNN--NNNNN-NN--N--AA---CAACATGCTGC-TGTT----AACC----AAGTATTATCAAATGAATCTGTAA------ACAAAGAACAAAGA-AT-ATTTTTTA------------AGTATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAC---AAT-T-T-TTTT-AAAACATAATCATC-----ATATTATGCACCA-AA--CTATA--A-CCATTGTATTTAGAAGCA---AAAAAAAAAAAATGAGGACT-C-ATAAAT-GAAAT----TGGA-TC--AAT-ATCA---GGGATGCG----GT---GCTGG---AT-C---TAG------GGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TC--A--GCTTT--CAAACA-TTA-TTAAAAATGAA-T-CTTTCTTTG-TTG--T--CA-TTT---TAGGCA-----TCTTCGACCCCC---CCCC-CCCC---CCCCCCCCCCCCC
gi|1 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctaAATCTTGCAGTCAATTGAATATGTGCATGTGTTTGTGCGTCTG-GCAGGTAA--CAT----TGTCAAAAGAGATCAAAACCCTGCAA-A-----ATATGTA------ATTG-TTGTAAAAAGTTT----TATAAGTACACAA--ATTGCCCTAATGAT----TTTAATGAAAATACT-T--T-----AG---AT--ATGCCATAG----------CAAAAATAATGTAAAAGT-CGAT-CTGAT-------CCATAATT---ATTATCACCATACTA-TGTTGTAC--AT--ATG-ATTTTCGTTAGTCATAC----A---------GG----CCTGATGCATGCAATACACTATAA-GACACATT-TTAT---CACATC-CAGCTCTATGTACAAAATTCAG-ATT-CATTGCAACACGCCACATTTACTTTATT-T--TCAC-AGACATCAGAAG----TA------TG-TA-----A--TAGGAGGTTATCGTATA-CGTTAC---G-TAC---C----TAAATCTTA-ATAC-ATATATA-A-GTACCT-CTCTCTCTCTTCCCCCCCCT--TTTTT------TTTTTTAA----ACCA-AATACACAT-TTTTTGGAATCCCNNNN-NNNNNNNNNNN---NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN----------NNNNNNNNNNTAT----GT-CAT-TGTTT---TCATCATTTAC-GTT-CAATTTAGGT-TGAAGGGT-GCGTGTGTGTGT-------GT--GTGTGTGGGGGGGGGGGGTGTATGTGCA-TAAGGACGTGCTAT-TCT--CAGTCAGAAA-CTATG-CATGTAACTA-TTATCT-AATA-CACAGCTGTCACAGTT-AAATTACATTTC-ATTTGATTGATAAAACAAAACTTCACATTTTTGAA-ACGTTATCGATCTTG----TTTTTCTCT-------CGTTGTATATTGCA----ACTGC--AAATGGGGCC-TACAGCTATTACAGCACGCA--AAACAATTA--T-TTTTC--TGT-GAC--TT-T--TG-TTCT-GAA-AATGG-GGTA-ATCTTCACTC-CT-ACTAGCCTTTCTG--GA-TAC-----CGT---GTGTCCATGT-T---ACAT-TTCCCC-CA---TGC-GCAG-GTTTTTCACAA-TTTTC-AA--GCGAA--TTCAAAGC-ATT-TCG----TT--TAAAACATCTGCAA-CTAAACACCTCCACG-CATGTGCACC-ATCGGT-GTTTT-------GACG-GAGGTCATG--GGCCGGACAATTCTCCCGC-----GATTTCGT----GAT-TGGCT-TGC----G--AAGATG-GTAACC-TCCACCTCCCC-T-GACG--ACATGGAAGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatcttgcagtcaattgaatatgtgcatgtgtttgtgcgtctggcaggtaacattgtcaaaagagatcaaaaccctgcaaaatatgtaattgttgtaaaaagttttataagtacacaaattgccctaatgattttaatgaaaatactttagatatgccatagcaaaaataatgtaaaagtcgatctgatccataattattatcaccatactatgttgtacatatgattttcgttagtcatacaggcctgatgcatgcaatacactataagacacattttatcacatccagctctatgtacaaaattcagattcattgcaacacgccacatttactttattttcacagacatcagaagtatgtaataggaggttatcgtatacgttacgtacctaaatcttaatacatatataagtacctctctctctcttccccccccttttttttttttaaaccaaatacacattttttggaatcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtcattgttttcatcatttacgttcaatttaggttgaagggtgcgtgtgtgtgtgtgtgtgtggggggggggggtgtatgtgcataaggacgtgctattctcagtcagaaactatgcatgtaactattatctaatacacagctgtcacagttaaattacatttcatttgattgataaaacaaaacttcacatttttgaaacgttatcgatcttgtttttctctcgttgtatattgcaactgcaaatggggcctacagctattacagcacgcaaaacaattatttttctgtgacttttgttctgaaaatggggtaatcttcactcctactagcctttctggataccgtgtgtccatgttacatttcccccatgcgcaggtttttcacaattttcaagcgaattcaaagcatttcgtttaaaacatctgcaactaaacacctccacgcatgtgcaccatcggtgttttgacggaggtcatgggccggacaattctcccgcgatttcgtgattggcttgcgaagatggtaacctccacctcccctgacgacatggaagcgt
gi|10 : acattaatgatatagcataattcatttatttataaacacgtattaaatacagtagccaatttaaagctagcattcctgtggggtcacaatggaactggatctaactcaagacaagatacattgagtcaatataggcaaagaatatttatcatcaaattgatcaatgcatagtgttgaaatataaaaaattattgattccaaaataatgtctctgcgtgcctcatcagtgttaaaataattgcaattcttttgtcatgtccctccttcttttacatacttgggaacttgcacagatatcaaaatctccaacaaagtacatgttgcaaggttcaatcggtaaaatatcaaataagccttcaaagtggtattttttttctattgtagtagaatattgtttttggtaaaaagggatagcttgttgatagggttgatctaataactggagttgatgatgattcagtctgagtatgctctgttgatgaagagtgtggttctttgactacnnnnnnnnnnnnnnnnnnnnnnnnnaacaacatgctgctgttaaccaagtattatcaaatgaatctgtaaacaaagaacaaagaatattttttaagtattgtgcaaatgccaaatcattaatggacaaagcatgcacattaagtaagatacaacaatttttttaaaacataatcatcatattatgcaccaaactataaccattgtatttagaagcaaaaaaaaaaaaatgaggactcataaatgaaattggatcaatatcagggatgcggtgctggatctaggggacaatacatttccccttcactaacctcagctttcaaacattattaaaaatgaatctttctttgttgtcattttaggcatcttcgaccccccccccccccccccccccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncGG--CAAA---A----ATATATATA-TATTTATCAAT-CAA-ATTGAT-CAATTG-----CATAGTGTTTGACAAATAT-AAA----AATTCT---TG-ATTTCCAAATAATT-G--TCTG-G----CGC----------CTCATCAGGATATTTAAAAA--------TA-ATT-GC--AATTC--TTTTAGTGCATG--CC-CTCT--TTCT--TTTACCCC---CACTGCTCTGG-GGGGAACTTG---CAC-----A-GATAC----AAATCTC-CA-ACAAAATTA-ATAACA-TTGTG-CAA-GTTCACATTGGT-AAAATACCAAATGAACAGC--GACGTTGGTATATT-----TATC---ATAG---------GAATATTgt
gi|11 : tTTTTTTTCTATT---GTAGT-------AGA-------------T-A-AA--GGGATGG-CTTGTT-GAT--GGG-GTTGATCTGA-TAACTGGAGTTGTGGAT-G-ATTAAGT-ATACT---------AG---TA--CTCT-ATTCTGCT------GTGTAATTCT-TTG-----AC-----GTGCTGC----TGTACCAAG--TATTA-TC--A--
gi|11 : atgaaaccagcttagcgcttttcagtactttgaTTA------------T-CATTGTG-------CA--AATGCCAAATC---AT-----AAAttgtgcaaatgccaaatcataaac
gi|12 : atgaaaccagcttagcgcttttcagtactttgatttttttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaAAT-GTCTCTG--------C----------CTCATCAG--TGTT--AAAAATACAATGTA-ATT-GC--AATTC--TTTT-GT-CATG-TCC-CTCT--TTCT--TTTA---CATGCA-TGCTT-----GGGAACTTG---CAC-----AGTATATCA--AAATCTC-CA-ACAAA--TT-ATAACACTGTTG-CAAGGTTCACATTGGT-AAAATc
gi|14 : TTT-------GACG-GAGATAATG--G-CT-GACAATTCTTCCGC-----GATTT--T----GAT-TGGCTGTGA----G--AAGATG-GTAA-C-TGCGTCACCCC-C-GACA--TCATGGAAG
gi|15 : tg-A-AAAAGGGAAAG-CCTGTT-GAT--AGG-GTTGATCTAA-TAACTGAAGTTGATGAT-G-AT---------AC---------AG---TATGCTCT-GT--TGAT-GAATAGTGTGGTTaga
gi|2 : --AGG-GTTGATCTAA-TAACTGGAGT-GATGATTG-ATT---C-GC------------AG---TATGCTCT-GT--TGAT-GAAGAGTGTGATTCTCTTG-----ACT-AAAATGCTGC----TGTACCAAG--TATTA-TT--ATTAA---TGA-AT----C-GGTA----AG-A----AAC--------------------A------ACA---------GA-AT-ATTTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AG-----TATTGGACA-AA--CC--AT-GC---A-CATT--TATGAA--AGATGCTAAC---AATATAT-CTTT-TAAAAAT-ATCATC-----ATATTA-GCA-CA-AA--C-AT---A-CCTTTGTATTTAGAAGC-----ATAAAAATGAG-AGGGACT-C-ATAAAT--AAAT----CGGG-CC--AAT-ATCA---GGGATGCA----GT---GCTGG---AT-T-A-TAGA----GGGG--ACAAT---A-ATTCTA-CC--TTCAC--AAC---C---TC--A--GCTT---C-AACA-TTATTTGAAAATGGA-TATTTTCTTTG-TTG--T--CA-TTT---TAGG-A-----CC-----CCCCC---CCCC-CCCC---CCCCA
gi|2 : CTTTA-ATGCAT----A------TT-GG----CCTGATACAT-----ACACAAT-GTTACAAATA-A-ATG-A-ACATgtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|2 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatataAATTTTGCAGTCAAATGAATATGT-----TGTTTGTGT-TATGTGCAGGTAAGACATGATATCTCA-----GACCAAA--CCTGCAA-ATACATGTATGTACAACAAATTGACCCTAAATAATTT----TA-------AGAA--AT-GCTTTA--GAT-ATGCTTAATGGAATTGTT-T--TGTAATAGATCATGCATGCCA-GG----------CAAAAATA-TATAAAAGT-CGAT-CTGAT-------C-GTAATTTAAATTA----CAAACTA-T---GTGTAGATTATT---ATTTCTTTA-TTGTATAAACA------TGTAG----CCTGATGCAT-----ACACAA-----------T-T-A-G-ACACATCACA--TCT-TGTACAAAATTTAG-GTTACATTG---------ACATTTA-TTTATT-A--TCAC-A-GC-CCAGAAG----TA------TG-TACCCAGG--TAATAGGTTAT-GTATA-CGTCAC---G-TAGATCT----TAGATCTTATACAC-ATGTATACACATACATAATGTGCCCC---CCCCCCCTTGTTTTT------TC-----A----ACCATAACACA-AT-TTTTAGGAATCTCGGTC-ATC---TCAAACTTACAG----CAGAAACTGGCCACGCAAAGCGACTTATGACG-TGTGAAGGTGGG----------GGAA-------A------T-TAT-TG-TT---TCATTATTTAC-TTTTCAGT---GGT-TGAAGGGT-GCGTGTGT---T-------GG--------GAGGGGGGGGGGTGCAT-T-TA-TAA-GACGTGCTAT-TCTCGCGGTTAGAAC-TTATT-CATGTA-CTA-TTGACT-AATTG-A-A-CTGTCACAGTTAAAATTACA-TTC-AATTGATTGATAAAAC-AA-CTT---AA-TTTGAA-ACA-TGTCGATC-TG----TTTTTTTCTCCTCTTACGTTGAATATTGCACTGCAATGCTTGAAT-GGGCC-TA-GGCTA---CAGCACGT---AAACAAT----T-TTTTC--TGT-GAA--AA-T--TG-TTCT-G---AATGG-GGTGTATCT-CACTC-CT-ACTATCC-TTCTG--GG-T-C-----CGT---GTGT-CAC-T-T---ACAT-TT-CCC-CA---TGC-GCAG-GTCTTTCAC---TTTTC-AAG-GCGAA--TTCAAAGCAATC-TCA----TT--aataaattctatatcttgcattgttaaaattttgcagtcaaatgaatatgttgtttgtgttatgtgcaggtaagacatgatatctcagaccaaacctgcaaatacatgtatgtacaacaaattgaccctaaataattttaagaaatgctttagatatgcttaatggaattgttttgtaatagatcatgcatgccaggcaaaaatatataaaagtcgatctgatcgtaatttaaattacaaactatgtgtagattattatttctttattgtataaacatgtagcctgatgcatacacaattagacacatcacatcttgtacaaaatttaggttacattgacatttatttattatcacagcccagaagtatgtacccaggtaataggttatgtatacgtcacgtagatcttagatcttatacacatgtatacacatacataatgtgcccccccccccttgttttttcaaccataacacaatttttaggaatctcggtcatctcaaacttacagcagaaactggccacgcaaagcgacttatgacgtgtgaaggtgggggaaattattgtttcattatttacttttcagtggttgaagggtgcgtgtgttgggaggggggggggtgcatttataagacgtgctattctcgcggttagaacttattcatgtactattgactaattgaactgtcacagttaaaattacattcaattgattgataaaacaacttaatttgaaacatgtcgatctgtttttttctcctcttacgttgaatattgcactgcaatgcttgaatgggcctaggctacagcacgtaaacaattttttctgtgaaaattgttctgaatggggtgtatctcactcctactatccttctgggtccgtgtgtcacttacatttccccatgcgcaggtctttcacttttcaaggcgaattcaaagcaatctcatt
gi|3 : agggttgatctaataactggagtgatgattgattcgcagtatgctctgttgatgaagagtgtgattctcttgactaaaatgctgctgtaccaagtattattattaatgaatcggtaagaaacaacagaatattttttaatattgtgcaaatgccaaatcagtattggacaaaccatgcacatttatgaaagatgctaacaatatatcttttaaaaatatcatcatattagcacaaacatacctttgtatttagaagcataaaaatgagagggactcataaataaatcgggccaatatcagggatgcagtgctggattatagaggggacaataattctaccttcacaacctcagcttcaacattatttgaaaatggatattttctttgttgtcattttaggacccccccccccccccccccagtgttagttttccgttctacattttattgcaacaaattggttttgttttgaacaatcatctaattcagcttgcatctaatatctaattatgaagcaaaataacattatatactttaatgcatattggcctgatacatacacaatgttacaaataaatgaacataataaattctatatcttgcattgttaaACATTAATT--AGAGTGCGGCCA-----TTAATTGTCATT--ATTACT------AAACAAGCATAATTAAA---TACCTCGTAGACTTAGTATTCAG--------------------CCAA--TTTAGATAAAGAGATAAG------CATTCC---TGTGGGGTCACAATGGAACTG-AATC----TAACTCCA--GGACCCAAGATACATTTAACCGTCAATATTTAGGGTCAAA---ACGTCA-------ACTATTTATCA-TTCAACATTGAT-CAAT-GTTTTACGTAGTGTT-GA-AATTAT-AAGCAACAATTTCATGTG-ATTCCAAAATAACT-GTCTCTG-GGCGTCGC----------CTCATCA---TGTT--AAAA--------TA-ATTTGCGAAATTC--TTTT-GT--ATG-TCC-CTCC--GTCT--TTTA---C----A-TATT------GGGAACTTGAGACACC----A-TATATCA--AAATCTCTCA-ACAAC-CTA-AGTACA-GTTTG-CAAGGTTCA----------AAT------CGAGCCT--------TGGTATTTTTTTTTTCTTCTGATAGCCCGGGCTAGAATAT-GTTTTTGGTTATAAAAGGGATAGTCTTGTTCGATTAAGGCATTGATCTAAATAACTGAGTTTGATGAT-GGATT---T-GTCTGTAGAATCGTAA---TATGCTCTTGG--TGATTGAAGAGTGTGGTTCT-CTGTTGATACT-AAAATG-TGCCCCATGT-CCAAGAGTATTAATC--A--AACAATGA-AT----C-TGTA----AACA----AAGCGC-----------------AATCGCTACA-------GGGAGATAACTCTTTA------------A-TATTGTG-------CAATAATGCCACA-C---ATAGTGGCAATGGACACAAGTGC--AT-GCTCAA-CA-CTATAAGTATTAGATG---ACTTAAAT-T-T-TTTT-TTAACAT-CTTGTCATGTAATATTATGTACCACAACCC-CTA--ACCCATTGTATTTAGAAGCACCTAACAAAAATGAA-GGGGACT-CGATAAATAGAAATTCGACGGGTTT--AATGATCA---GGGATGCA----TTTTCG-TGG---AT-CTATTAGACTTCTGGG--ACAAT---ACA-TTCC-CCAGTTCACT-AACCCTC---TT--A--TCCTT--C-AACATTTA-TTAAAAATGGA-T-CTTCCTTCATTTG--T--CATTTT---TAGG-A-----TTTTTGACCCCC---CCCC-CCAC---CCC
gi|4 : caatttattgagttaattgtttttgcttaaggaaatttaaatttgtatgtttagttcaaaaataaataacataataggctatataatgctgcgctttaacgttctatttttataaaatgtgtccttctcttgcttcttgtccattatattagttatttgtgattggtaactgctaacaataccatctttcacaaatgtgttgacggctaccactctggttgattcatctctcaaattgattttaagatttattaatttaagggccatagtcttcaccccctcccccccctcaccgctcccccccttttatctcttttccaggattctacccctaataaccaatatattctatacaaatacacccgtccaaaatcaacgggcaatggttgtgggggggtaggtggggggggactccgtaatcgTATA-A-GGACAA-GTATCCCCC---CCCCTTCT--TTTTT------Tac
gi|4 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagattACATTAATTGAATAGG-----CAAACTTT-AATT-TCATTTTATTTATTACAACAGACA--TATT-TTAAAAATTAC-----------AGT----AGACCCTAGTAGTTAAATCAAGCCAAACTT----TAAAGAGAT--GATTGGGCATTTCCTTTGCGGGATCACAATGGAACTGGAATCGTAACAACTC-AATTGAT--AATAGATAATGA---GTCAATA-T-AGG--CAAAGGCA----A-------A-TA-TTATCA-T-CAA-ATTGATCCAATGG-----CATAGTGTT-GA-AATTAT-AAA----AATTCTC--TGAATTCCAAAATAAGTGGTTTCTC-G----TGCGTTTGCTTCTTTCATCAG---GTT--GAAA--------TACATTGGCA-AATTCTGTTTT-GT-CATGATCCGCTCCAAATCTTATTTA---G---CA-TACTT--GAAGAAAACTTG---CACCTCTTA-TA-ATCAAGAAATCTC-CAGACAAAAGTACAAAACA-TGTTACCAAGGTGCAATTTGGTAAAAATATCAAAtttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttacattaattgaataggcaaactttaatttcattttatttattacaacagacatattttaaaaattacagtagaccctagtagttaaatcaagccaaactttaaagagatgattgggcatttcctttgcgggatcacaatggaactggaatcgtaacaactcaattgataatagataatgagtcaatataggcaaaggcaaatattatcatcaaattgatccaatggcatagtgttgaaattataaaaattctctgaattccaaaataagtggtttctcgtgcgtttgcttctttcatcaggttgaaatacattggcaaattctgttttgtcatgatccgctccaaatcttatttagcatacttgaagaaaacttgcacctcttataatcaagaaatctccagacaaaagtacaaaacatgttaccaaggtgcaatttggtaaaaatatcaaa
gi|5 : tctgtgtccacgcattctcgcccccactgatggcaaacttccaacagcgctgtgttcaacaagactccgtcaactttacattgttaaaaacaatcgaatggcgtagacgtattggtcgatctttgcaatcgggtattcatttgttaatcgcctcgatttgaccacgattttcaccagaaaaagtttgtcaaaggatctgacacacttctgagaaaaattacgtgcacaaaattcaactgagtaaaagaaaagtatcagtaaacttaaaaatcaagcattgatgataacagctttatgttgcaacattagattcgctttttagaagcaccaatgcccaaatggcatgtctatatttgtgaagacagagtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgcacatagaatatatggtgttatatgaaaactaaactacggttcatcaagtctccactcggagtttaggattagtttttaagaatataaggatttaaaaaaatgttagtttagttaaaaaaaactgaagtaaaaaaataggactaatatatgctgcgattttaaaccggtctcgcattttagaattgtgttcattctgcatttcgtggacatatcttgttaatcatgtattgttaactaaataataccattcttcacacaaatgtggtttgaacttacattggaaaaatatagatctcatcaaattgtttaagatttataaggacaagtatcccccccccttcttttttttttccttcaggtctacccataaaaccagattatattctagaaaatttttacccacccgtccaccacaaaatcaaacggaattgggagggggagggactcgtctaatgttTTATT-TGGTCAC-AGGGATCAGAAG----TAA-----TGGTA-----ACTTAGGAGGTTATCGTATA-CGT-AC---GATAG---AC---TATATCTTA-ATA--ACATATA-A-GTACAT-ACTTACCCC---C----------TTGTAAAAAACC-----AGAAAACCA-AATACACATATTTTTTGAATCCCCCGTCAT-GCGTCAAA---AACT----TACAAACAGAAAACGCGGCCCGCCGAAAG-CGACTTAATGAAAGGTGAATGGTAGGGAA-------ATTAAAGTGCATCTGTTTCATTTATTATTAACGTTTTCATTTTAGGT-TGAAGGGTTGCGTGTGT---T-------GGCGGTG-GTGGTGGGGCGAAGTG-----GCAATAAGAACGTGCTATGTCT--CAGTCAGAAAACTTTGGCATGTA-CTAATTATCTTAATAGCAC--CTGTCACAGTT-AAATTAACTTTCTATTTGATTGATAAAACAAA-CTT---ACTTCTGAACACGTT--CGATCTTGGGGGTTCTTCTCT-------CGTTAAGTATTGCA--ACACTGC--CAAGGGGGCCGTACAGCTA---CAGCACGTAAGAAACAATTA--T-TTTTCTGTGT-GAC--TTGT--TT-TTCTGGAA-AATGG-GGTATAT-TCCACTCGCTCACTA-GCTTTCTG--GATTAC-----CGTGTGGTGTCCAC-TGTTTAACAT-TT-CCC-CATTTTGCTGCAG-TGTTTGCACAA-TTTTCTGAGTGCGAAATTTCAAAGCAATCTTCG----TTAAAAAAACATCC-----TTTAAC-CCTCAGCC-AATGTGCACCTATGCGT-G-TTT-------GACG-GAGGTCATGTAGG-C-GACAAATATTCGCC-----GGATTC-T----GAT-TGCTT-TGTTGCGG--AAGATG-GTAA-CGTCCACCTCCCCAT-GACGACACGTGGAAG
gi|6 : CAAG--TACTA-TCCAA--AA---TGA-AT----CATGTACAGAAACACCAGAAT--------------------A------ACG-------AGAA-TT-ATTTTTTATACAATCCTTTAA-TGCTATAGAGAGATCA--AATGCCACATCCAGAT-----TGA--GACA-AA--GCCAATTGC---AACA-T--TTAGGA--AAATGT-AAC---AAA-TATATCTTATAAAAAT-ATCATC-----ATATTATGCACCA-AA--A-ACAATA-CCTTTG-AATTAG----A---AATAAAAAAGAG-AGGGACTCC-ATAAAT-TAAAT----CGGG-GCCAAATAATCAAAGGAGATGCAAGATGTA--ATTAGAAAATAC-A-TAGA----AGGGGAACAATAAAAAATATCTACC--TTCACCAAAC---CATATC--AAGGCTTCAAC-AAAA-TAA-TTAAAAA---ATT-CTTTAT--G-TTGGATAACA-ATTATATAGG-AAATACTATACGACCCCCAAACCCCACCCCACACCCCACCCCCCCCCgc
gi|6 : gttagccctCTTTA-T-GTAT----A------TTTGG----CCTGATGCAT-----ACACAAT-GTTACACAaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatatactttatgtatatttggcctgatgcatacacaatgttacacaaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|7 : gttagccctcaagtactatccaaaatgaatcatgtacagaaacaccagaataacgagaattattttttatacaatcctttaatgctatagagagatcaaatgccacatccagattgagacaaagccaattgcaacatttaggaaaatgtaacaaatatatcttataaaaatatcatcatattatgcaccaaaaacaatacctttgaattagaaataaaaaagagagggactccataaattaaatcggggccaaataatcaaaggagatgcaagatgtaattagaaaatacatagaaggggaacaataaaaaatatctaccttcaccaaaccatatcaaggcttcaacaaaataattaaaaaattctttatgttggataacaattatataggaaatactatacgacccccaaaccccaccccacaccccacccccccccaacgaaagagctgttactagtctcttcttgtatttacattttatatgacaaaaaaattagatttttgattttgaacaatcatttcttgaaactcagtcttgctctaatatctaaattatggggaaaaggggcccaaataacattatataCTGCAACAT-CATATGTATACAACAAATGGACCCTAA-TAATTTGGCACA------CAGAACAAT-GCTTTA--GATTATGCTTAATAGA-TTGTTATAGTGTAATAG---ATGCATGCCATAAAGAGCAAACACAAAAATA-TATAAAAGTACGATACTGATATGCAAAC-CTACTT---AAAATTACCAAACTAATGTCATGCGAATTAATGGAATTTCTCTC-TCACAC----ACACTCATTCAGGCCCCCTGGTGTAT-----ACACA-TAGTAACACATTGT-ATGTATACATCACA--TCT--GTACAATATT-AGCG----ATTAC----CATCACATTT-TTTTATTAC--TCACCAGGC-CCAGAAGATGCTACCCAGCTG-GA-----A--TA--AGGTTATCGTATAGCGTTACAACG-TAG---AAAGATAGATCTTA-GCATTACACATA-A---------TGTCCCCC---CCCCCTTTGTTTTTT------TC-----A----ACCA-AACACACAT-TTTGTGGAATTCTCAGG-ATCATCTCAAA---ACTTACAGCAGAAACTGGCCACGC---CCAAAGC-GGACC-CTTAACGAAGCC----------GTAA-------CT----AT-CAT-TG-TT---TCATTATTTAC-TTTTCATT---GGTATAGAAGGT-GCGTGTAT---TTGGGGGAGG--ATGCGTGGaaataaaatagaacaaaataaattttatcaattgaggttaaaaaatcttgcattgtttaaaatctatagcagtcatataatatgtgtgtttggggtatgagc
gi|8 : -TGGTATTTTTTTTCTATT---GTAGCCGGC---AGAATATTGTTTTTGGT-A-AAAAGGGATAG-CTTGTT-GAT--AGG-GTTGATCTAA-TAACTGGAGTTGATGAT-G-ATT---TAGTCTG---------AGTAATATGCTCT-GT--TGAT-GAAGAGTGTGGTTCT-TTG-----ACTAAAAATGCTGC----TGTACCAAG--TATGA-TC--A--AA---TGA-AT----C-TGTA----AACA----AAG--------------------A------ACA-------A-GA-AT-ATCTTTTA------------A-TATTGTG-------CA--AATGCCAAATC---AT-----TAATGGACA-AA--GC--AT-GC---A-CA-T--TAAGTA--AGATAC-AAT----TT-TTT-TTTT-TAAATAT-ATCATC-----ATATTATGTA-CA-AA--C-ATA--A-CCATTGTATTTAGAAGCA---TAAAAAAATGA---GGGACT-C-ATAAAT-GAAAT----TGGG-TT--AAT-ATCA---GGGATGCA----GT---GCTGG---AT-C---TAGA----TGGG--ACAAT---ACATTTCC-CC--TTCACT-AAC---C---TCATA--GCTTC--
gi|9 : cctGCACGTA--AACCAATCAACTACTTTC--TGTTGACACTT-TCCTGCTTCT-GAACAATGGAGGTATATCTC-ACTC-C--ACTATCCTTTCTGCTGG-TATGTAGACAT---GTGTC-AC-T-T---ACATATTCCCCTCA--TTGC-GCAGTGGTCTTCACAAATTTTC-AAG--CGAA--T-CAAAGCAATC-ACAATACTT--CAAAACTCCTGC-ATCCTAACGCCACCACCTCA----CATC-ATCGGTCGTCTTCATATAGAATGCGAGGTCATG--G-CG-GACAATTCTCCGGCCCCCCGACTTC-CCCTGGAGGCGGCG-TGC----AGCATGATGCGTAA-C-TCCGCCTCCCC-CTGACG--ACGTGGAAGCttcttttgtttatgtttaggattct
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTCTTGTACATCTTATTATTTGTATTGTAACTAAATACCACTTCACAAAGTTGAACTACTGGGATATATCTATAAAATTGTTTAAGATTTTATAGG
Unaligned ( gi|16 ): CTAGCTAGCTTAGCGCTTTTCAGTACTTTGATTATCTTTTACTGCAGAAACTAGAT
Unaligned ( gi|17 ): TTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTTG
Unaligned ( gi|18 ): TTTACGAAGTCAGCTTAGCGCTTTTCAGTACTTTGATTTTAGTTTTCTTT
Unaligned ( gi|19 ): TAACTAGCTAGCTTAGCGCTTTCAGTACT