lowQualScore : 111 333 111 11 444444444444444444444444444444444444444444 111 11111 22222 55555555555555555555555555555555 222 444444444444444444444444444444444444444444444444444444 22222 1 111 111 1
lowQualScore : 6 111 666 5 222 66 4 33 4 4 4 11 0 4 3 777 4 777777777777777777777777777777777777777777 888 66 5 5 99999 55555 5 66666666666666666666666666666666 5 66 999 4 4 66 0 777 4 4 777 555555555555555555555555555555555555555555555555555555 66 5 11111 3 3 6 6 1 3 333 0 5 111 1 9 3 5 1 3
lowQualScore : . ... ... . ... .. . .. . . . .. . . . ... . .......................................... ... .. . . ..... ..... . ................................ . .. ... . . .. . ... . . ... ...................................................... .. . ..... . . . . . . ... . . ... . . . . . .
lowQualScore : 0 999 555 0 444 11 4 88 4 4 7 22 1 4 1 000 4 111111111111111111111111111111111111111111 666 99 0 0 55555 99999 0 88888888888888888888888888888888 0 99 444 4 4 11 1 888 4 4 111 000000000000000000000000000000000000000000000000000000 99 0 11111 5 3 4 0 8 2 777 3 7 333 1 1 2 7 6 5
consensus : NNNTAAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAAT-GGTC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCAATG--G--CCATTTTCTAAATT---TAATGGG--C----------CAT-C-AAAATAT--TT-TT-GAAGGGCCA--TTTTTTC-G-GTA-ATTTC--------T-------TNAA-A--TAACA---A-T--TAAAACAT---TG-T-T--TCTT---G-G-TTTTATT--AAAAT-A-AGCA-------------C--AT--------AA-T---------TTC---GTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGTCT-ATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
Reference ( gi|2 ) : CAATGAAGCAG-ACTAT-CAGGGAT-TGGGAA--GGCC--AAAAT-GTTC-AA-TGGGACAATGGCCC-CATGGTTC-A-AC-TTTTCAATG-CA--CCATTTTTTAAATT---TCATAAG--C----------CAT-T-AAAATAT--TT-TT-GAAGGGCGA--TTTTTCC-G-GTA-ATTTC--------T-------TGAA-A--TAATA---A-T--TAAAACAT---TG-T-T--TCTT---G-G-TTTTATT--AAAAT-A-AGCA-------------C--AT--------AA-T---------TTT---GTTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGTTC-ATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|12 : TAAAGCAATAATATTCAGGGAT-TGGGAA--GGCC--AAAAT-GGTG-AA-TAGGACACTGGCCC-CACAGCTC-A-AG-TTTTCAATG-GG--CCA-TTTTCAAATT---TAATGGA--C----------CAT-C--AACTTT--TT-TG-GAAGGGTCA--TTTTT---A-GTA-ATTTC----------------TGTA-A--T-GTAC--A-TTGTAAAACA----TG-C-T----TT---G-G-TTTTATT--AAA-------CG-------------C--AT--------AA-
gi|10 : tAGCAA-GCT---CAGGGAT-TGGGAC--GGCC--AAAAT-GGCC-AA-TGGGACATTGGCTC-CATGATCC-A-AC-TTTTCTATG-GG--CCAT-----AAA---------AA------------------T-AAAATAT--TT-TT-GAAGGGCCA--TTTTT-C-A-GTC-ATTTC--------TGTCAATATCAA-A--T-GTAC--A-T--TAAAACATTG-TG-T-T--TCTT---G-G-TTTTATT--TAAAA-A-GACA-------------C--AT--------AA-TAAAATCCAATTTCA-TTTTTC--CCACCTGCACTG-TC
gi|9 : ttattGCAG-TCT-C-CAGGGAT-TGGGA---GGCC--AAA-T-GCGC-A--TGGGAT-----------TGGCTC-A-TC-T----GAT------CCACTTT------------ATGGG--C----------CATAT-AAAATATATTT-TG-GAAGGGCCA--ATTTTTT-A-GTC-ATTTC--------TG------TCAATA--TCACATGTA-C--TTAAACAT---TG-TGTTATCTT---GTG-TTTTATT--GTAAC-AGATCA-------------C--ATATAAATCCAA-T---------TTC---ATTCTT--CCACATGCA-TG-TC------GTCTTGgtct
gi|3 : ctaaagttaatt-ACTA--CGGGGAT-TGGGAA--GGCC--AAAAT-GGTC-AA-TGGGACTATGACCC-CATATTTC-A-AC-TTTTCGATG-GT--CCATTTTC-AAACT---TAATGGG--C----------CAT-C-A---TAT--TT-GT-GAAGGGCCA--TTTTTTTTG-GTA-ATTTC--------A-------GTAA-A--TAACA---A-T--CATAACAT---TG-T-C--TCTT---G-G-TTTTAAT--AAAAT-A-AGCC-------------C--AT--------AA-T---------TTC---ATTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGTCT-AAT-TTGA-----TCTCAT-------ATTTCATA-AGCAAACATGTGCTACTTGACCTTcgagactatatatg
gi|11 : ct-CAGGGAT-TGGGAA--GGCC--Actttaatagcacgtacgtag
gi|7 : cagccaatgaaattcagtgtatcagaacactttgaaattagaaacgaaagtacaaaaaattaagttgtactcaatacactttgagagaaaaacgtaagttgcgatcaataatggatgcgccgttcggcgcatggattgaattatttaatgtgccaattttcatctgaatggaactatggcgcagggcgcaAGGGATATGGGGAACGGCCCAAGAAT-GGCC-AA-TGGGATA--------CA--GCTT-G-GC-TTCGCAATGACA--CCACTTTCTA--TTGGGCCATAAAATC----------CAT-A-AAAATAT--TTCTT-GAAGGACCA--ATTTTTC-A-GCA-TTTTCTGTCAATAT-------TTAA-ATGTAAC----A-T--TCAAACATTG-TG-T-T--TCTT---G-GTTTTTATTACAAAAT-A-GACAACATAATAAGAATC--AC--------AA-T---------TCTCCATTTTTT--CCACCTGCACTG---------GTCTTG-CTGCA
gi|4 : gtttatttagcaaagcctcggGGAT-TGAGAA--GGCC--AAAATGGGTC-AA-T-GGACAAT-GCCC-CATGGTTC---AC-TTTTCAATG-----GCATTTTC--AATT---TAATGGG-------------CAT-CAAAAATAT--TT-TT-GAAGGTTCATTTTTTTTC-GTGTA-ATTTC--------T-------CG-A-A--TAATA---A-T--TAAACAAT---TG-T-G--TTTT---G-G--TTTATT-------------------------------T--------AA-T---------TTC---GTTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTACCT-TAACCTTGCGCTTC--AAATTTTGGATCCTATT-TTGAAC--TTTTCTTCAGGGTCATTTCATATAGCAAACAT-T-CTACTTGACTT
gi|5 : GGAT-TGGAA----GCC--AAAAT-GT-C-AA-TGGGACAATGGTGC-CACGGTTC-A-ACTTTTTCAATG--G--CCA--TTTTAAATT---TAATGGG--C----------CAT-CGAAGATAT--TT-TT-GAAAGGCTA--TTATT-C-G-GTA-ATTTC--------C-------TGTA-A--TAACC---ATT--TACAACATATATGCT-T--TCTT---G----TTTA-T--AAAAT-ATAGCA-------------CGTAT--------AATT---------TTT---GTTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGTCT-ACTATTTAAC-TTTT--TTCAGGG-CATTTCATA-AGCAActttaatacgattgtagta
gi|14 : --GGCC--AAAAT-GGTCAAA-TGGCACAATGCCCG-CACAGTTCAA-AC-TTTTCAATA-TGACCCATTTTTCAAct
gi|15 : AAAT-GGTC-AAATGGCACAATGGCCCGCACAGTTC-AGAC-TTTTCAATA-TGACCCATATTTTCAATT---tctagtg
gi|8 : ccATT---TCATAAG--CAACTGTGTTACAT-C-AAACTAT--TT-TTCAAAAGGC-----CTTTTC-A-GTAGATCTC--------T-------GTAA-A--TAGCA---A-T--TAGAAAATAA-TA-T-T--T-TT---G-G-TTTTATT--AAAAT-A-AGCA-------------C--AT--------AA-T---------TC----GTTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGGCT---------AA------TCTTCGGGGGC---TTATA-AGC-AACATGTGCTACTTGACCT
gi|13 : ttttcagggc-T-T--TCTTCGGG-G-TCATTTC--ATAATCA-AACA-------------T--GT--------GC-TA--------TTT---GACCTT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGATCT-ATT-TTGAACGTTTTTCTTCA----CATTTTATgtttaataaagcacgtagtata
gi|13 : ttcgggttcattttgaacttTTCGGGTTC-ATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|1 : GGGTCT-ATT-TTGAAC-TTTTTCTTCAGGGTAATTTCATA-AGCAAACATGTGCTACTTGACCTTctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttat
gi|6 : TCTTCGGGGGC---TTATA-AGCAA-CATGTGCTACTTGACCTctttaatatcacatagtaaaggagaaacatttcattggttatctatattgtttcaaccaatgaaattccgtgtatcaatacatactgaaattgcatgtagaaacgaaagtacaaaaaattaagtcgtactcaatacactttgggagaaaaacgtaagttgcgatcgataatggatgcgccagtttggcgcatggattgaatgatttaattcgccaattttcatctgaatgggactatggcgcagggcgcatggccttcccaatccct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 1 111 111 1111 2222222 222222222222 111 2222222222222 2222222 222 111 4444444444444444444444444 111111 1111
lowQualScore : 0 111 4 000 55 4 4 4 3 1 1 4 0 4 4 3 55 3 6666 55 666 0000000 0 4 666 666666666666 4 4 4 4 666 777 4 7777777777777 4 66 4 2222222 4 4 666 4 4 66 0 4 4 777 0 000 4 66 2222222222222222222222222 444444 66 4 1111 3 2 1 5 2 5 3 88 7 1 5
lowQualScore : . ... . ... .. . . . . . . . . . . . .. . .... .. ... ....... . . ... ............ . . . . ... ... . ............. . .. . ....... . . ... . . .. . . . ... . ... . .. ......................... ...... .. . .... . . . . . . . .. . . .
lowQualScore : 0 333 4 111 55 0 0 0 3 6 6 0 5 0 0 6 00 6 2222 00 444 5555555 7 0 222 777777777777 4 4 4 4 444 888 4 9999999999999 4 11 4 2222222 4 4 111 4 4 11 1 4 4 111 9 444 4 11 9999999999999999999999999 888888 11 4 1111 5 2 0 0 2 0 2 11 1 9 0
consensus : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTTC--------T-TTAA-A--TA-ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
Reference ( family-2514 ) : NNNTAAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTTC--------T-TNAA-A--TA-ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|1 : GGGT-CTATT-TTGAAC-TTTTTCTTCAGGGTAATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|10 : AGCAA-GCT---CAGGGAT-TGGGAC--GGCC--AAAATGG-CC-AA-TGGGACATTGGCTC-CATGATCC-A-AC-TTTTCT--AT-G-GG-C--C---AT-----AAA---AA-T-----------------A---AAATAT-TT-TT-G-AAGGGCCA---TTTTTC-A-GTC-ATTTC--------T-GTCA-A--TA-TCAAATGTACA-T-TAAAACATTG-TG-T-T--TCTTG-G-TTTTATT--TAAAAA-GAC-AC--ATAATAAAATCCAA-T-----------TTC----ATTTTTC--CCACCTGCACTG-TCctttaatatcacatagtaaaggagaaacatttcattggttatctatattgtttcaaccaatgaaattccgtgtatcaatacatactgaaattgcatgtagaaacgaaagtacaaaaaattaagtcgtactcaatacactttgggagaaaaacgtaagttgcgatcgataatggatgcgccagtttggcgcatggattgaatgatttaattcgccaattttcatctgaatgggactatggcgcagggcgcatggccttcccaatccct
gi|11 : ttatt-CAGGGAT-TGGGAA--GGCC--Agtct
gi|12 : cagccaatgaaattcagtgtatcagaacactttgaaattagaaacgaaagtacaaaaaattaagttgtactcaatacactttgagagaaaaacgtaagttgcgatcaataatggatgcgccgttcggcgcatggattgaattatttaatgtgccaattttcatctgaatggaactatggcgcagggcgcaTAAAGCAATAATATTCAGGGAT-TGGGAA--GGCC--AAAATGG-TG-AA-TAGGACACTGGCCC-CACAGCTC-A-AG-TTTTCA--ATGG-G--C--C---ATTTTC-AAATTTAA-TGGAC--CAT------C-----AACTTT-TT-TG-G-AAGGGTCA--TTTTT---A-GTA-ATTTC--------T-GT-A-A--TGTACA-------T-TGTAAAACA----TG-C-T----TTG-G-TTTTATT--AAA------C-GC--AT----------AA-
gi|13 : tTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|13 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTATT-TTGAACGTTTTTCTTCA----CATTTTATctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttat
gi|14 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgacc--GGCC--AAAATGG-TCAAA-TGGCACAATGCCCG-CACAGTTCAA-AC-TTTTCA--AT-ATGACC--C---ATTTT-TCAATCTAG-TG
gi|15 : AAATGG-TC-AAATGGCACAATGGCCCGCACAGTTC-AGAC-TTTTCAATAT-G-A--C--CCATATTTTC--AATT
gi|2 : ccTGAAGCAG-ACTAT-CAGGGAT-TGGGAA--GGCC--AAAATGT-TC-AA-TGGGACAATGGCCC-CATGGTTC-A-AC-TTTTCA--AT-GCA--C--C---ATTTTTTAAATTTCA-TAAGC--CAT------T-A---AAATAT-TT-TT-G-AAGGGCGA--TTTTTCC-G-GTA-ATTTC--------T-TGAA-A--TA-ATA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTT----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|3 : caa-ACTAC--GGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACTATGACCC-CATATTTC-A-AC-TTTTCG--AT-G-GT-C--C---ATTTTC-AAACTTAA-TGGGC--CAT------C-A------TAT-TT-GT-G-AAGGGCCA--TTTTTTTTG-GTA-ATTTC--------A-GTAA-A--TA-ACA-------A-T-CATAACAT---TG-T-C--TCTTG-G-TTTTAAT--AAAATA-AGC-CC--AT----------AA-T-----------TTC----A-TTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAAT-TTGA-----TCTCAT-------ATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|4 : ctGGAT-TGAGAA--GGCC--AAAATGGGTC-AA-TGG-ACAATG-CCC-CATGGTTC-A--C-TTTTCA--AT-G-G--C------ATTTTC--AATTTAA-TGGG---CAT------CAA---AAATAT-TT-TT-G-AAGGTTCATTTTTTTTC-GTGTA-ATTTC----------TCGA-A--TA-ATA-------A-T-TAAACAAT---TG-T-G--TTTTG-G--TTTATT------------------T----------AA-T-----------TTC----G-TTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTATT-TTGAAC--TTTTCTTCAGGGTCATTTCATATAGCAAACAT-T-CTACTTGACTTctttaatagcacgtacgtag
gi|5 : GGAT-TGGAA----GCC--AAAATG--TC-AA-TGGGACAATGGTGC-CACGGTTC-A-ACTTTTTCA--AT-G-G--C--C---ATTT--TAAATTTAA-TGGGC--CAT------CGA---AGATAT-TT-TT-G-AAAGGCTA---TTATTC-G-GTA-ATTTC--------C-TGTA-A--TA-ACC-------ATT-TACAACATATATGCT-T--TCTTG----TTTA-T--AAAATATAGC-ACGTAT----------AATT-----------TTT----G-TTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTACTATTTAAC-TTTT--TTCAGGG-CATTTCATA-AGCAActttaatacgattgtagta
gi|6 : TCTTCGGGGGC---TTATA-AGCAA-CATGTGCTACTTGACCTct
gi|7 : ttttgggctaaAGGGATATGGGGAACGGCCCAAGAATGG-CC-AA-TGGGATA----------CAGCTT-G-GC-TTCGCA--AT-G-A--CACC---ACTTTCTA----T---TGGGC--CATAAAATCC-ATAAAAATAT-TTCTT-G-AAGGACCA--ATTTTTC-A-GCA-TTTTCTGTCAATAT-TTAA-ATGTA-AC--------A-T-TCAAACATTG-TG-T-T--TCTTG-GTTTTTATTACAAAATA-GACAAC--AT----------AA-TAAGAATCACAATTCTCCAT-TTTTT--CCACCTGCACTG-gtttaataaagcacgtagtatatcaaagcaaaagttcattgatatatcttattgcttcaaccaattaaattcagtgtatcacaattgtaaattagaaacgagagtaaaaaaataaggttcgtactcaatacactttgggagaaaacgtaagtgcgattatcaatggggcgccattttggcgatgattgaatcatttaatgcgccaatttcatctgaat
gi|8 : gtttatttagcaaagcctcgg-TTTTCA-----G-G--G--C---ATTTCATAAGC--AACTGTGTTACAT------C-A---AACTAT-TT-TTCA-AAAGGCC-----TTTTC-A-GTAGATCTC--------T-GTAA-A--TA-GCA-------A-T-TAGAAAATAA-TA-T-T--T-TTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-------------TTC----G-TTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTA------A-------TCTTCGGGGGC---TTATA-AGC-AACATGTGCTACTTGACCTgtcttgctgca
gi|9 : C-CAGGGAT-TGGGA---GGCC--AAA-TGC-GC-A--TGGGAT--TGGC---------TC-A-TC-T----G--AT------C--C---ACTTT---------A-TGGGC--CATA-----T-A---AAATATATT-TT-GGAAGGGCCA--ATTTTTT-A-GTC-ATTTC--------TGTCAATA--TC-ACATGT----A-C-TTAAACAT---TG-TGTTATCTTGTG-TTTTATT--GTAACAGATC-AC--ATATAAATCC--AA-T-----------TTC----A-TTCTT--CCACATGCA-TG-TC------GTCTTGgtttaataaagcacgtagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 1 111 111 1111 2222222 222222222222 111 222222222222 11 2222222 222 111 4444444444444444444444444 111111 1111
lowQualScore : 0 111 4 000 55 4 4 4 3 1 1 4 0 4 4 3 55 3 6666 55 666 0000000 0 4 666 666666666666 4 4 4 4 666 777 4 555555555555 66 00 2222222 4 4 666 4 4 66 0 4 4 777 0 000 4 66 2222222222222222222222222 444444 66 4 1111 3 2 1 5 2 5 3 88 7 1 5
lowQualScore : . ... . ... .. . . . . . . . . . . . .. . .... .. ... ....... . . ... ............ . . . . ... ... . ............ .. .. ....... . . ... . . .. . . . ... . ... . .. ......................... ...... .. . .... . . . . . . . .. . . .
lowQualScore : 0 333 4 111 55 0 0 0 3 6 6 0 5 0 0 6 00 6 2222 00 444 5555555 7 0 222 777777777777 4 4 4 4 444 888 4 888888888888 11 66 2222222 4 4 111 4 4 11 1 4 4 111 9 444 4 11 9999999999999999999999999 888888 11 4 1111 5 2 0 0 2 0 2 11 1 9 0
consensus : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTTC--------TGTNAA--TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
Reference ( family-2514 ) : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTTC--------TTTAAA--TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|1 : GGGT-CTATT-TTGAAC-TTTTTCTTCAGGGTAATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|10 : AGCAA-GCT---CAGGGAT-TGGGAC--GGCC--AAAATGG-CC-AA-TGGGACATTGGCTC-CATGATCC-A-AC-TTTTCT--AT-G-GG-C--C---AT-----AAA---AA-T-----------------A---AAATAT-TT-TT-G-AAGGGCCA---TTTTTC-A-GTC-ATTTC--------TGTCAA--TA--TCAAATGTACA-T-TAAAACATTG-TG-T-T--TCTTG-G-TTTTATT--TAAAAA-GAC-AC--ATAATAAAATCCAA-T-----------TTC----ATTTTTC--CCACCTGCACTG-TCctttaatatcacatagtaaaggagaaacatttcattggttatctatattgtttcaaccaatgaaattccgtgtatcaatacatactgaaattgcatgtagaaacgaaagtacaaaaaattaagtcgtactcaatacactttgggagaaaaacgtaagttgcgatcgataatggatgcgccagtttggcgcatggattgaatgatttaattcgccaattttcatctgaatgggactatggcgcagggcgcatggccttcccaatccct
gi|11 : ttatt-CAGGGAT-TGGGAA--GGCC--Agtct
gi|12 : cagccaatgaaattcagtgtatcagaacactttgaaattagaaacgaaagtacaaaaaattaagttgtactcaatacactttgagagaaaaacgtaagttgcgatcaataatggatgcgccgttcggcgcatggattgaattatttaatgtgccaattttcatctgaatggaactatggcgcagggcgcaTAAAGCAATAATATTCAGGGAT-TGGGAA--GGCC--AAAATGG-TG-AA-TAGGACACTGGCCC-CACAGCTC-A-AG-TTTTCA--ATGG-G--C--C---ATTTTC-AAATTTAA-TGGAC--CAT------C-----AACTTT-TT-TG-G-AAGGGTCA--TTTTT---A-GTA-ATTTC--------TGT-AA--TGT-ACA-------T-TGTAAAACA----TG-C-T----TTG-G-TTTTATT--AAA------C-GC--AT----------AA-
gi|13 : tTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|13 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTATT-TTGAACGTTTTTCTTCA----CATTTTATctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttat
gi|14 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgacc--GGCC--AAAATGG-TCAAA-TGGCACAATGCCCG-CACAGTTCAA-AC-TTTTCA--AT-ATGACC--C---ATTTT-TCAATCTAG-TG
gi|15 : AAATGG-TC-AAATGGCACAATGGCCCGCACAGTTC-AGAC-TTTTCAATAT-G-A--C--CCATATTTTC--AATT
gi|2 : ccTGAAGCAG-ACTAT-CAGGGAT-TGGGAA--GGCC--AAAATGT-TC-AA-TGGGACAATGGCCC-CATGGTTC-A-AC-TTTTCA--AT-GCA--C--C---ATTTTTTAAATTTCA-TAAGC--CAT------T-A---AAATAT-TT-TT-G-AAGGGCGA--TTTTTCC-G-GTA-ATTTC--------TTGAAA--TA--ATA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTT----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|3 : caa-ACTAC--GGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACTATGACCC-CATATTTC-A-AC-TTTTCG--AT-G-GT-C--C---ATTTTC-AAACTTAA-TGGGC--CAT------C-A------TAT-TT-GT-G-AAGGGCCA--TTTTTTTTG-GTA-ATTTC--------AGTAAA--TA--ACA-------A-T-CATAACAT---TG-T-C--TCTTG-G-TTTTAAT--AAAATA-AGC-CC--AT----------AA-T-----------TTC----A-TTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAAT-TTGA-----TCTCAT-------ATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|4 : ctGGAT-TGAGAA--GGCC--AAAATGGGTC-AA-TGG-ACAATG-CCC-CATGGTTC-A--C-TTTTCA--AT-G-G--C------ATTTTC--AATTTAA-TGGG---CAT------CAA---AAATAT-TT-TT-G-AAGGTTCATTTTTTTTC-GTGTA-ATTTC---------TCGAA--TA--ATA-------A-T-TAAACAAT---TG-T-G--TTTTG-G--TTTATT------------------T----------AA-T-----------TTC----G-TTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTATT-TTGAAC--TTTTCTTCAGGGTCATTTCATATAGCAAACAT-T-CTACTTGACTTctttaatagcacgtacgtag
gi|5 : GGAT-TGGAA----GCC--AAAATG--TC-AA-TGGGACAATGGTGC-CACGGTTC-A-ACTTTTTCA--AT-G-G--C--C---ATTT--TAAATTTAA-TGGGC--CAT------CGA---AGATAT-TT-TT-G-AAAGGCTA---TTATTC-G-GTA-ATTTC--------CTGTAA--TA--ACC-------ATT-TACAACATATATGCT-T--TCTTG----TTTA-T--AAAATATAGC-ACGTAT----------AATT-----------TTT----G-TTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTACTATTTAAC-TTTT--TTCAGGG-CATTTCATA-AGCAActttaatacgattgtagta
gi|6 : TCTTCGGGGGC---TTATA-AGCAA-CATGTGCTACTTGACCTct
gi|7 : ttttgggctaaAGGGATATGGGGAACGGCCCAAGAATGG-CC-AA-TGGGATA----------CAGCTT-G-GC-TTCGCA--AT-G-A--CACC---ACTTTCTA----T---TGGGC--CATAAAATCC-ATAAAAATAT-TTCTT-G-AAGGACCA--ATTTTTC-A-GCA-TTTTCTGTCAATATTTAAATGTA--AC--------A-T-TCAAACATTG-TG-T-T--TCTTG-GTTTTTATTACAAAATA-GACAAC--AT----------AA-TAAGAATCACAATTCTCCAT-TTTTT--CCACCTGCACTG-gtttaataaagcacgtagtatatcaaagcaaaagttcattgatatatcttattgcttcaaccaattaaattcagtgtatcacaattgtaaattagaaacgagagtaaaaaaataaggttcgtactcaatacactttgggagaaaacgtaagtgcgattatcaatggggcgccattttggcgatgattgaatcatttaatgcgccaatttcatctgaat
gi|8 : gtttatttagcaaagcctcgg-TTTTCA-----G-G--G--C---ATTTCATAAGC--AACTGTGTTACAT------C-A---AACTAT-TT-TTCA-AAAGGCC-----TTTTC-A-GTAGATCTC--------TGTAAA--TA--GCA-------A-T-TAGAAAATAA-TA-T-T--T-TTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-------------TTC----G-TTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTA------A-------TCTTCGGGGGC---TTATA-AGC-AACATGTGCTACTTGACCTgtcttgctgca
gi|9 : C-CAGGGAT-TGGGA---GGCC--AAA-TGC-GC-A--TGGGAT--TGGC---------TC-A-TC-T----G--AT------C--C---ACTTT---------A-TGGGC--CATA-----T-A---AAATATATT-TT-GGAAGGGCCA--ATTTTTT-A-GTC-ATTTC--------TGTCAA--TATCACATGT----A-C-TTAAACAT---TG-TGTTATCTTGTG-TTTTATT--GTAACAGATC-AC--ATATAAATCC--AA-T-----------TTC----A-TTCTT--CCACATGCA-TG-TC------GTCTTGgtttaataaagcacgtagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 1 111 111 1111 2222222 222222222222 111 222222222222222222222222 222 111 4444444444444444444444444 111111 1111
lowQualScore : 0 111 4 000 55 4 4 4 3 1 1 4 0 4 4 3 55 3 6666 55 666 0000000 0 4 666 666666666666 4 4 4 4 666 777 4 4 9 444444444444444444444444 4 4 666 4 4 66 0 4 4 777 0 000 4 66 2222222222222222222222222 444444 66 4 1111 3 2 1 5 2 5 3 88 7 1 5
lowQualScore : . ... . ... .. . . . . . . . . . . . .. . .... .. ... ....... . . ... ............ . . . . ... ... . . . ........................ . . ... . . .. . . . ... . ... . .. ......................... ...... .. . .... . . . . . . . .. . . .
lowQualScore : 0 333 4 111 55 0 0 0 3 6 6 0 5 0 0 6 00 6 2222 00 444 5555555 7 0 222 777777777777 4 4 4 4 444 888 4 4 7 111111111111111111111111 4 4 111 4 4 11 1 4 4 111 9 444 4 11 9999999999999999999999999 888888 11 4 1111 5 2 0 0 2 0 2 11 1 9 0
consensus : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
Reference ( family-2514 ) : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|1 : GGGT-CTATT-TTGAAC-TTTTTCTTCAGGGTAATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|10 : AGCAA-GCT---CAGGGAT-TGGGAC--GGCC--AAAATGG-CC-AA-TGGGACATTGGCTC-CATGATCC-A-AC-TTTTCT--AT-G-GG-C--C---AT-----AAA---AA-T-----------------A---AAATAT-TT-TT-G-AAGGGCCA---TTTTTC-A-GTC-ATTT-CTGTCAA----------TA--TCAAATGTACA-T-TAAAACATTG-TG-T-T--TCTTG-G-TTTTATT--TAAAAA-GAC-AC--ATAATAAAATCCAA-T-----------TTC----ATTTTTC--CCACCTGCACTG-TCctttaatatcacatagtaaaggagaaacatttcattggttatctatattgtttcaaccaatgaaattccgtgtatcaatacatactgaaattgcatgtagaaacgaaagtacaaaaaattaagtcgtactcaatacactttgggagaaaaacgtaagttgcgatcgataatggatgcgccagtttggcgcatggattgaatgatttaattcgccaattttcatctgaatgggactatggcgcagggcgcatggccttcccaatccct
gi|11 : ttatt-CAGGGAT-TGGGAA--GGCC--Agtct
gi|12 : cagccaatgaaattcagtgtatcagaacactttgaaattagaaacgaaagtacaaaaaattaagttgtactcaatacactttgagagaaaaacgtaagttgcgatcaataatggatgcgccgttcggcgcatggattgaattatttaatgtgccaattttcatctgaatggaactatggcgcagggcgcaTAAAGCAATAATATTCAGGGAT-TGGGAA--GGCC--AAAATGG-TG-AA-TAGGACACTGGCCC-CACAGCTC-A-AG-TTTTCA--ATGG-G--C--C---ATTTTC-AAATTTAA-TGGAC--CAT------C-----AACTTT-TT-TG-G-AAGGGTCA--TTTTT---A-GTA-ATTT-CTGT-AA----------TGT-ACA-------T-TGTAAAACA----TG-C-T----TTG-G-TTTTATT--AAA------C-GC--AT----------AA-
gi|13 : tTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|13 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTATT-TTGAACGTTTTTCTTCA----CATTTTATctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttat
gi|14 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgacc--GGCC--AAAATGG-TCAAA-TGGCACAATGCCCG-CACAGTTCAA-AC-TTTTCA--AT-ATGACC--C---ATTTT-TCAATCTAG-TG
gi|15 : AAATGG-TC-AAATGGCACAATGGCCCGCACAGTTC-AGAC-TTTTCAATAT-G-A--C--CCATATTTTC--AATT
gi|2 : ccTGAAGCAG-ACTAT-CAGGGAT-TGGGAA--GGCC--AAAATGT-TC-AA-TGGGACAATGGCCC-CATGGTTC-A-AC-TTTTCA--AT-GCA--C--C---ATTTTTTAAATTTCA-TAAGC--CAT------T-A---AAATAT-TT-TT-G-AAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAA----------TA--ATA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTT----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|3 : caa-ACTAC--GGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACTATGACCC-CATATTTC-A-AC-TTTTCG--AT-G-GT-C--C---ATTTTC-AAACTTAA-TGGGC--CAT------C-A------TAT-TT-GT-G-AAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAA----------TA--ACA-------A-T-CATAACAT---TG-T-C--TCTTG-G-TTTTAAT--AAAATA-AGC-CC--AT----------AA-T-----------TTC----A-TTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAAT-TTGA-----TCTCAT-------ATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|4 : ctGGAT-TGAGAA--GGCC--AAAATGGGTC-AA-TGG-ACAATG-CCC-CATGGTTC-A--C-TTTTCA--AT-G-G--C------ATTTTC--AATTTAA-TGGG---CAT------CAA---AAATAT-TT-TT-G-AAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAA----------TA--ATA-------A-T-TAAACAAT---TG-T-G--TTTTG-G--TTTATT------------------T----------AA-T-----------TTC----G-TTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTATT-TTGAAC--TTTTCTTCAGGGTCATTTCATATAGCAAACAT-T-CTACTTGACTTctttaatagcacgtacgtag
gi|5 : GGAT-TGGAA----GCC--AAAATG--TC-AA-TGGGACAATGGTGC-CACGGTTC-A-ACTTTTTCA--AT-G-G--C--C---ATTT--TAAATTTAA-TGGGC--CAT------CGA---AGATAT-TT-TT-G-AAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AA----------TA--ACC-------ATT-TACAACATATATGCT-T--TCTTG----TTTA-T--AAAATATAGC-ACGTAT----------AATT-----------TTT----G-TTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTACTATTTAAC-TTTT--TTCAGGG-CATTTCATA-AGCAActttaatacgattgtagta
gi|6 : TCTTCGGGGGC---TTATA-AGCAA-CATGTGCTACTTGACCTct
gi|7 : ttttgggctaaAGGGATATGGGGAACGGCCCAAGAATGG-CC-AA-TGGGATA----------CAGCTT-G-GC-TTCGCA--AT-G-A--CACC---ACTTTCTA----T---TGGGC--CATAAAATCC-ATAAAAATAT-TTCTT-G-AAGGACCA--ATTTTTC-A-GCA-TTTT-CTGTCAATATTTAAATGTA--AC--------A-T-TCAAACATTG-TG-T-T--TCTTG-GTTTTTATTACAAAATA-GACAAC--AT----------AA-TAAGAATCACAATTCTCCAT-TTTTT--CCACCTGCACTG-gtttaataaagcacgtagtatatcaaagcaaaagttcattgatatatcttattgcttcaaccaattaaattcagtgtatcacaattgtaaattagaaacgagagtaaaaaaataaggttcgtactcaatacactttgggagaaaacgtaagtgcgattatcaatggggcgccattttggcgatgattgaatcatttaatgcgccaatttcatctgaat
gi|8 : gtttatttagcaaagcctcgg-TTTTCA-----G-G--G--C---ATTTCATAAGC--AACTGTGTTACAT------C-A---AACTAT-TT-TTCA-AAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAA----------TA--GCA-------A-T-TAGAAAATAA-TA-T-T--T-TTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-------------TTC----G-TTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTA------A-------TCTTCGGGGGC---TTATA-AGC-AACATGTGCTACTTGACCTgtcttgctgca
gi|9 : C-CAGGGAT-TGGGA---GGCC--AAA-TGC-GC-A--TGGGAT--TGGC---------TC-A-TC-T----G--AT------C--C---ACTTT---------A-TGGGC--CATA-----T-A---AAATATATT-TT-GGAAGGGCCA--ATTTTTT-A-GTC-ATTT-CTGTCAA----------TATCACATGT----A-C-TTAAACAT---TG-TGTTATCTTGTG-TTTTATT--GTAACAGATC-AC--ATATAAATCC--AA-T-----------TTC----A-TTCTT--CCACATGCA-TG-TC------GTCTTGgtttaataaagcacgtagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 1 111 111 1111 2222222 222222222222 111 222222222222222222222222 222 111 4444444444444444444444444 111111 1111
lowQualScore : 0 111 4 000 55 4 4 4 3 1 1 4 0 4 4 3 55 3 6666 55 666 0000000 0 4 666 666666666666 4 4 4 4 666 777 4 4 9 444444444444444444444444 4 4 666 4 4 66 0 4 4 777 0 000 4 66 2222222222222222222222222 444444 66 4 1111 3 2 1 5 2 5 3 88 7 1 5
lowQualScore : . ... . ... .. . . . . . . . . . . . .. . .... .. ... ....... . . ... ............ . . . . ... ... . . . ........................ . . ... . . .. . . . ... . ... . .. ......................... ...... .. . .... . . . . . . . .. . . .
lowQualScore : 0 333 4 111 55 0 0 0 3 6 6 0 5 0 0 6 00 6 2222 00 444 5555555 7 0 222 777777777777 4 4 4 4 444 888 4 4 7 111111111111111111111111 4 4 111 4 4 11 1 4 4 111 9 444 4 11 9999999999999999999999999 888888 11 4 1111 5 2 0 0 2 0 2 11 1 9 0
consensus : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
Reference ( family-2514 ) : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|1 : GGGT-CTATT-TTGAAC-TTTTTCTTCAGGGTAATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|10 : AGCAA-GCT---CAGGGAT-TGGGAC--GGCC--AAAATGG-CC-AA-TGGGACATTGGCTC-CATGATCC-A-AC-TTTTCT--AT-G-GG-C--C---AT-----AAA---AA-T-----------------A---AAATAT-TT-TT-G-AAGGGCCA---TTTTTC-A-GTC-ATTT-CTGTCAA----------TA--TCAAATGTACA-T-TAAAACATTG-TG-T-T--TCTTG-G-TTTTATT--TAAAAA-GAC-AC--ATAATAAAATCCAA-T-----------TTC----ATTTTTC--CCACCTGCACTG-TCctttaatatcacatagtaaaggagaaacatttcattggttatctatattgtttcaaccaatgaaattccgtgtatcaatacatactgaaattgcatgtagaaacgaaagtacaaaaaattaagtcgtactcaatacactttgggagaaaaacgtaagttgcgatcgataatggatgcgccagtttggcgcatggattgaatgatttaattcgccaattttcatctgaatgggactatggcgcagggcgcatggccttcccaatccct
gi|11 : ttatt-CAGGGAT-TGGGAA--GGCC--Agtct
gi|12 : cagccaatgaaattcagtgtatcagaacactttgaaattagaaacgaaagtacaaaaaattaagttgtactcaatacactttgagagaaaaacgtaagttgcgatcaataatggatgcgccgttcggcgcatggattgaattatttaatgtgccaattttcatctgaatggaactatggcgcagggcgcaTAAAGCAATAATATTCAGGGAT-TGGGAA--GGCC--AAAATGG-TG-AA-TAGGACACTGGCCC-CACAGCTC-A-AG-TTTTCA--ATGG-G--C--C---ATTTTC-AAATTTAA-TGGAC--CAT------C-----AACTTT-TT-TG-G-AAGGGTCA--TTTTT---A-GTA-ATTT-CTGT-AA----------TGT-ACA-------T-TGTAAAACA----TG-C-T----TTG-G-TTTTATT--AAA------C-GC--AT----------AA-
gi|13 : tTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|13 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTATT-TTGAACGTTTTTCTTCA----CATTTTATctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttat
gi|14 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgacc--GGCC--AAAATGG-TCAAA-TGGCACAATGCCCG-CACAGTTCAA-AC-TTTTCA--AT-ATGACC--C---ATTTT-TCAATCTAG-TG
gi|15 : AAATGG-TC-AAATGGCACAATGGCCCGCACAGTTC-AGAC-TTTTCAATAT-G-A--C--CCATATTTTC--AATT
gi|2 : ccTGAAGCAG-ACTAT-CAGGGAT-TGGGAA--GGCC--AAAATGT-TC-AA-TGGGACAATGGCCC-CATGGTTC-A-AC-TTTTCA--AT-GCA--C--C---ATTTTTTAAATTTCA-TAAGC--CAT------T-A---AAATAT-TT-TT-G-AAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAA----------TA--ATA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTT----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|3 : caa-ACTAC--GGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACTATGACCC-CATATTTC-A-AC-TTTTCG--AT-G-GT-C--C---ATTTTC-AAACTTAA-TGGGC--CAT------C-A------TAT-TT-GT-G-AAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAA----------TA--ACA-------A-T-CATAACAT---TG-T-C--TCTTG-G-TTTTAAT--AAAATA-AGC-CC--AT----------AA-T-----------TTC----A-TTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAAT-TTGA-----TCTCAT-------ATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|4 : ctGGAT-TGAGAA--GGCC--AAAATGGGTC-AA-TGG-ACAATG-CCC-CATGGTTC-A--C-TTTTCA--AT-G-G--C------ATTTTC--AATTTAA-TGGG---CAT------CAA---AAATAT-TT-TT-G-AAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAA----------TA--ATA-------A-T-TAAACAAT---TG-T-G--TTTTG-G--TTTATT------------------T----------AA-T-----------TTC----G-TTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTATT-TTGAAC--TTTTCTTCAGGGTCATTTCATATAGCAAACAT-T-CTACTTGACTTctttaatagcacgtacgtag
gi|5 : GGAT-TGGAA----GCC--AAAATG--TC-AA-TGGGACAATGGTGC-CACGGTTC-A-ACTTTTTCA--AT-G-G--C--C---ATTT--TAAATTTAA-TGGGC--CAT------CGA---AGATAT-TT-TT-G-AAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AA----------TA--ACC-------ATT-TACAACATATATGCT-T--TCTTG----TTTA-T--AAAATATAGC-ACGTAT----------AATT-----------TTT----G-TTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTACTATTTAAC-TTTT--TTCAGGG-CATTTCATA-AGCAActttaatacgattgtagta
gi|6 : TCTTCGGGGGC---TTATA-AGCAA-CATGTGCTACTTGACCTct
gi|7 : ttttgggctaaAGGGATATGGGGAACGGCCCAAGAATGG-CC-AA-TGGGATA----------CAGCTT-G-GC-TTCGCA--AT-G-A--CACC---ACTTTCTA----T---TGGGC--CATAAAATCC-ATAAAAATAT-TTCTT-G-AAGGACCA--ATTTTTC-A-GCA-TTTT-CTGTCAATATTTAAATGTA--AC--------A-T-TCAAACATTG-TG-T-T--TCTTG-GTTTTTATTACAAAATA-GACAAC--AT----------AA-TAAGAATCACAATTCTCCAT-TTTTT--CCACCTGCACTG-gtttaataaagcacgtagtatatcaaagcaaaagttcattgatatatcttattgcttcaaccaattaaattcagtgtatcacaattgtaaattagaaacgagagtaaaaaaataaggttcgtactcaatacactttgggagaaaacgtaagtgcgattatcaatggggcgccattttggcgatgattgaatcatttaatgcgccaatttcatctgaat
gi|8 : gtttatttagcaaagcctcgg-TTTTCA-----G-G--G--C---ATTTCATAAGC--AACTGTGTTACAT------C-A---AACTAT-TT-TTCA-AAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAA----------TA--GCA-------A-T-TAGAAAATAA-TA-T-T--T-TTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-------------TTC----G-TTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTA------A-------TCTTCGGGGGC---TTATA-AGC-AACATGTGCTACTTGACCTgtcttgctgca
gi|9 : C-CAGGGAT-TGGGA---GGCC--AAA-TGC-GC-A--TGGGAT--TGGC---------TC-A-TC-T----G--AT------C--C---ACTTT---------A-TGGGC--CATA-----T-A---AAATATATT-TT-GGAAGGGCCA--ATTTTTT-A-GTC-ATTT-CTGTCAA----------TATCACATGT----A-C-TTAAACAT---TG-TGTTATCTTGTG-TTTTATT--GTAACAGATC-AC--ATATAAATCC--AA-T-----------TTC----A-TTCTT--CCACATGCA-TG-TC------GTCTTGgtttaataaagcacgtagtata
blockSeqs : T ATT A AAC CA G A A C G C G A G T AT G TGAC AC CAT TTAAATT C TTA AAAATCCATAA A C C G TTT TG G C A TATTTAAATGTAAC T G ATA C G TA T T ACA TAG A GT AATAAGAATCACAA TCCAT CA T ATGT A A G C T A A GT T A T
blockSeqs : . AT . A . . . . A C C . . . . . . CA . . CAAATT . C CAA . . . . T GT . . A TATCACATGT . . TG . . . . . A GAT . . ATAAATCCAAT G . . GT A A G . T . A T T A .
blockSeqs : . AC . A . . . . A G C . . . . . . GT . . TCAATC . C CGA . . . . T A . . G TGTACA . . AA . . . . . A AG . . AATT A . . AA A G A . T . A T T A .
blockSeqs : . A . . . . A G C . . . . . . G . . CAAACT . C ATA . . . . T G . . C TAATA . . . . . . . . A AG . . AAT G . . GT T G G . A . A T G A .
blockSeqs : . A . . . . A A C . . . . . . A . . TAAATT . C TA . . . . A G . . A TAACA . . . . . . . . A GA . . AAT G . . G . . . . T . A . G A .
blockSeqs : . A . . . . A G C . . . . . . G . . ATAAGC . C CA . . . . A A . . C TAATA . . . . . . . . A AG . . AAT G . . . . C . . . . A .
blockSeqs : . . . . . . A G G . . . . . . G . . CAATT . C CA . . . . . A . . . TAACC . . . . . . . . G . . . AA A . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . A . . CAATT . . C . . . . . A . . . TAGCA . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . G . . CTA .
blockSeqs : . . . . . . .
blockSeqCons : G*** CAAATT* C** CA********** T** TAACA******************* *** AAT********************** G***** T*
originalCons : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTCTAAATTTAA-TGGGC--CAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
finalCons : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-GG---C--C---ATTTTCAAATT-TAA-TGGGC--CATCA----------AAATAT-TT-TT-G-AAGGGCCAT--TTTTTC-G-GTA-ATTT-CTGTNAATAACA-------------------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--ATAAT----------------------TTCG-----TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAACT-TTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG
Alignments
lowQualScore : 1 111 111 111111 1111111 222222222222 111 222222222222222222222222 222 111 4444444444444444444444444 111111 1111 1
lowQualScore : 0 111 4 000 55 4 4 4 3 1 1 4 0 4 4 4 55 999999 777777 2222222 666666666666 4 4 4 4 666 777 4 4 9 444444444444444444444444 4 4 666 4 4 66 0 4 4 777 0 000 4 66 2222222222222222222222222 444444 66 4 1111 3 2 1 5 2 5 3 88 0 0 0 4 1
lowQualScore : . ... . ... .. . . . . . . . . . . . .. ...... ...... ....... ............ . . . . ... ... . . . ........................ . . ... . . .. . . . ... . ... . .. ......................... ...... .. . .... . . . . . . . .. . . . . .
lowQualScore : 0 333 4 111 55 0 0 0 3 6 6 0 5 0 0 0 55 444444 555555 1111111 777777777777 4 4 4 4 444 888 4 4 7 111111111111111111111111 4 4 111 4 4 11 1 4 4 111 9 444 4 11 9999999999999999999999999 888888 11 4 1111 5 2 0 0 2 0 2 11 5 4 8 4 9
consensus : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTC-AAATTTAATGGGCCAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
Reference ( family-2514 ) : NNNTGAAGCAA-ACTAC-CAGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACAATGGCCC-CACGGTTC-A-AC-TTTTCA--AT-G-G--C--C---ATTTTC-AAATTTAATGGGCCAT------C-A---AAATAT-TT-TT-G-AAGGGCCA--TTTTTTC-G-GTA-ATTT-CTGTNAA----------TA--ACA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTC----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTACATTTGACCTTGCCCTTCCGAAGTTTCGGGT-CTATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|1 : GGGT-CTATT-TTGAAC-TTTTTCTTCAGGGTAATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|10 : AGCAA-GCT---CAGGGAT-TGGGAC--GGCC--AAAATGG-CC-AA-TGGGACATTGGCTC-CATGATCC-A-AC-TTTTCT--AT-G-GG-C--C---AT-----AAA---AAT---------------A---AAATAT-TT-TT-G-AAGGGCCA---TTTTTC-A-GTC-ATTT-CTGTCAA----------TA--TCAAATGTACA-T-TAAAACATTG-TG-T-T--TCTTG-G-TTTTATT--TAAAAA-GAC-AC--ATAATAAAATCCAA-T-----------TTC----ATTTTTC--CCACCTGCACTG-TCctttaatatcacatagtaaaggagaaacatttcattggttatctatattgtttcaaccaatgaaattccgtgtatcaatacatactgaaattgcatgtagaaacgaaagtacaaaaaattaagtcgtactcaatacactttgggagaaaaacgtaagttgcgatcgataatggatgcgccagtttggcgcatggattgaatgatttaattcgccaattttcatctgaatgggactatggcgcagggcgcatggccttcccaatccct
gi|11 : ttatt-CAGGGAT-TGGGAA--GGCC--Agtct
gi|12 : cagccaatgaaattcagtgtatcagaacactttgaaattagaaacgaaagtacaaaaaattaagttgtactcaatacactttgagagaaaaacgtaagttgcgatcaataatggatgcgccgttcggcgcatggattgaattatttaatgtgccaattttcatctgaatggaactatggcgcagggcgcaTAAAGCAATAATATTCAGGGAT-TGGGAA--GGCC--AAAATGG-TG-AA-TAGGACACTGGCCC-CACAGCTC-A-AG-TTTTCA--ATGG-G--C--C---ATTTTC-AAATTTAATGGACCAT------C-----AACTTT-TT-TG-G-AAGGGTCA--TTTTT---A-GTA-ATTT-CTGT-AA----------TGT-ACA-------T-TGTAAAACA----TG-C-T----TTG-G-TTTTATT--AAA------C-GC--AT----------AA-
gi|13 : tTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTT
gi|13 : TT--CTACCTGAACTG-CCT--ATTGTCTCGTCTACATATAACCTTGCCCTTCCAAAGTTTCGGAT-CTATT-TTGAACGTTTTTCTTCA----CATTTTATctacctgaactgcctattgtctcgtctacatataaccttgcccttccaaagtttcggatctattttgaacgtttttcttcacattttat
gi|14 : ttcgggttcattttgaactttttcttcggggtcatttcataatcaaacatgtgctatttgacc--GGCC--AAAATGG-TCAAA-TGGCACAATGCCCG-CACAGTTCAA-AC-TTTTCA--AT-ATGACC--C---ATTTTT-CAATCTAGTG
gi|15 : AAATGG-TC-AAATGGCACAATGGCCCGCACAGTTC-AGAC-TTTTCAATAT-G-A--C--CCATATTTTC-AA
gi|2 : ccTGAAGCAG-ACTAT-CAGGGAT-TGGGAA--GGCC--AAAATGT-TC-AA-TGGGACAATGGCCC-CATGGTTC-A-AC-TTTTCA--AT-GCA--C--C---ATTTTTTAAATTTCATAAGCCAT------T-A---AAATAT-TT-TT-G-AAGGGCGA--TTTTTCC-G-GTA-ATTT-CTTGAAA----------TA--ATA-------A-T-TAAAACAT---TG-T-T--TCTTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-T-----------TTT----G-TTTTC--CCACCTGCACTG-TCC--GTTGTCTCGTCTGCATATAGCCTTGCCCTTCCAAAGTTTCGGGT-TCATT-TTGAAC-TTTTTCTTCGGGGTCATTTCATA-ATCAAACATGTGCTATTTGACCTTtt
gi|3 : caa-ACTAC--GGGGAT-TGGGAA--GGCC--AAAATGG-TC-AA-TGGGACTATGACCC-CATATTTC-A-AC-TTTTCG--AT-G-GT-C--C---ATTTTC-AAACTTAATGGGCCAT------C-A------TAT-TT-GT-G-AAGGGCCA--TTTTTTTTG-GTA-ATTT-CAGTAAA----------TA--ACA-------A-T-CATAACAT---TG-T-C--TCTTG-G-TTTTAAT--AAAATA-AGC-CC--AT----------AA-T-----------TTC----A-TTTTC--CCACCTGCACTG-TCC--AATGTCTCGTAAACATTTGACCTTGTCCTTCCAAAGTTTGGGGT-CTAAT-TTGA-----TCTCAT-------ATTTCATA-AGCAAACATGTGCTACTTGACCTT
gi|4 : ctGGAT-TGAGAA--GGCC--AAAATGGGTC-AA-TGG-ACAATG-CCC-CATGGTTC-A--C-TTTTCA--AT-G-G--C------ATTTTC-AA-TTTAATGGG-CAT------CAA---AAATAT-TT-TT-G-AAGGTTCATTTTTTTTC-GTGTA-ATTT-CT-CGAA----------TA--ATA-------A-T-TAAACAAT---TG-T-G--TTTTG-G--TTTATT------------------T----------AA-T-----------TTC----G-TTTTC--CCAACTGCACTG-TCC--G-TGTCTCGTCTAC-CTTAACCTTGCGCTTC--AAATTTTGGATCCTATT-TTGAAC--TTTTCTTCAGGGTCATTTCATATAGCAAACAT-T-CTACTTGACTTctttaatagcacgtacgtag
gi|5 : GGAT-TGGAA----GCC--AAAATG--TC-AA-TGGGACAATGGTGC-CACGGTTC-A-ACTTTTTCA--AT-G-G--C--C---ATTTT--AAATTTAATGGGCCAT------CGA---AGATAT-TT-TT-G-AAAGGCTA---TTATTC-G-GTA-ATTTCCTGT-AA----------TA--ACC-------ATT-TACAACATATATGCT-T--TCTTG----TTTA-T--AAAATATAGC-ACGTAT----------AATT-----------TTT----G-TTTTTCACCACCTGCACTA-TCCATGTCG-CTCGACTACATTTGACCTTGCACTT-CGAAGTTTCGGGT-CTACTATTTAAC-TTTT--TTCAGGG-CATTTCATA-AGCActttaatacgattgtagta
gi|6 : TCTTCGGGGGC---TTATA-AGCAA-CATGTGCTACTTGACCTct
gi|7 : ttttgggctaaAGGGATATGGGGAACGGCCCAAGAATGG-CC-AA-TGGGATA----------CAGCTT-G-GC-TTCGCA--AT-G-A--CACC---ACTTTC------TATTGGGCCATAAAATCC-ATAAAAATAT-TTCTT-G-AAGGACCA--ATTTTTC-A-GCA-TTTT-CTGTCAATATTTAAATGTA--AC--------A-T-TCAAACATTG-TG-T-T--TCTTG-GTTTTTATTACAAAATA-GACAAC--AT----------AA-TAAGAATCACAATTCTCCAT-TTTTT--CCACCTGCACTG-gtttaataaagcacgtagtatatcaaagcaaaagttcattgatatatcttattgcttcaaccaattaaattcagtgtatcacaattgtaaattagaaacgagagtaaaaaaataaggttcgtactcaatacactttgggagaaaacgtaagtgcgattatcaatggggcgccattttggcgatgattgaatcatttaatgcgccaatttcatctgaat
gi|8 : gtttatttagcaaagcctcggTTTTCAGGG-CATTTCATA-AGC-AAC-TGTGTTACgtcttgctgca
gi|8 : CAT------C-A---AACTAT-TT-TTCA-AAAGGCC-----TTTTC-A-GTAGATCT-CTGTAAA----------TA--GCA-------A-T-TAGAAAATAA-TA-T-T--T-TTG-G-TTTTATT--AAAATA-AGC-AC--AT----------AA-------------TTC----G-TTTTC--CCATCTGCACTGTTCC--GTTGTCTTGTCTAATTTTGACCTTGTCTCCCCGAA-TTTTGGG--CTA------A-------TCTTCGGGGGC---TTATA-AGC-AACATGTGCTACTTGACCTatcaaactatttttcaaaaggccttttcagtagatctctgtaaatagcaattagaaaataatatttttggttttattaaaataagcacataattcgttttcccatctgcactgttccgttgtcttgtctaattttgaccttgtctccccgaattttgggctaatcttcgggggcttataagcaacatgtgctacttgacctgtttaataaagcacgtagtata
gi|9 : ttttcagggcatttcataagcaactgtgttaC-CAGGGAT-TGGGA---GGCC--AAA-TGC-GC-A--TGGGAT--TGGC---------TC-A-TC-T----G--AT------C--C---ACTTT---------ATGGGCCATA-----T-A---AAATATATT-TT-GGAAGGGCCA--ATTTTTT-A-GTC-ATTT-CTGTCAA----------TATCACATGT----A-C-TTAAACAT---TG-TGTTATCTTGTG-TTTTATT--GTAACAGATC-AC--ATATAAATCC--AA-T-----------TTC----A-TTCTT--CCACATGCA-TG-TC------GTCTTGgtttaataaagcacgtagtata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATTGTAGTATAATGTTTAATCTGAATGGGACTAGTGCGCGAGGCGCATGGCTCCCAATCCTT
Unaligned ( gi|17 ): CTGAATGGGACTATGGCCAGGCGCATGGCATTTCCGTCCCTG