lowQualScore : 1111111111 2222222222222 11 777777777777777777777777 1 1 111 222222 333333 888888888888888888888888888888888888888888888888888888888888 111111 222222222222222222222222 111111111 11111 111 222222222222222
lowQualScore : 5 55 2 4 4 4 55 8 7777777777 4 2222222222222 4 66 4 7 9 99 4 000000000000000000000000 4 0 5 00 555 5 888888 000000 1 4 1 66 4 9999 333333333333333333333333333333333333333333333333333333333333 222222 1 1 8 6 444444444444444444444444 3 888888888 3 3 33333 3 0 3 66666 444 888888888888888 4 0 5 7 5 1
lowQualScore : . .. . . . . .. . .......... . ............. . .. . . . .. . ........................ . . . .. ... . ...... ...... . . . .. . .... ............................................................ ...... . . . . ........................ . ......... . . ..... . . . ..... ... ............... . . . . . .
lowQualScore : 7 44 6 0 0 0 55 0 5555555555 0 0000000000000 0 11 4 0 2 44 4 999999999999999999999999 0 9 0 55 888 0 666666 111111 1 0 9 11 4 4444 444444444444444444444444444444444444444444444444444444444444 777777 4 8 4 7 555555555555555555555555 1 777777777 1 1 88888 3 1 3 44444 777 777777777777777 4 8 2 1 0 4
consensus : TGCATC-TCTGTTACACCTC-GATTTGTCATT-GAA-CATG-CC--G-CC----------C-CT-------------TC-GA--C-ATCGCANGCA-TGGAAA-TATT----T-T---AAA----AAAA--AAGAATTAGATGACAAAATTGTAAAATGC-CAA-TTTGACTTTGNTCGGCGGAA-TCGACGTACACTG--GTGGTAC-CTC----AAATA-TGC---TT-TGCAC---ATC-TA----AA---G-----GCA---------------TCCTA--T--CAAAACAGTTAAA-ACTT-C----GG--AAAAAACACTCC-GTCGATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCGAA-G---ACTTTCCGGTGCCCAGCC--TGA-GAT-CTGAG-ATTGAGAACAA-AGCCAACAAAACT
Reference ( gi|8 ) : TGTATC-TCTGTTACACCTC-AATTTATCATT-GAA-CATG-CT--G-CC----------C-CT-------------TT-GA--C-ATCATACGCA-GGGAAA-TATT----AAT---AAA----AAAA--AAGAAGTAGATG-CAAAATTGTAAAGTAC-CAAGTTTGACTTTGATCAGTGGAA-TTGACGTACACTG--GTGGTAC-CTC----AAATA-TATATATT-TGCAC---ATC-TA----AA---G-----GCA---------------TCCTA--T--CAAAATAGTTGAA-ACTT-C----GG--AGAAAACACCCT-GTCAATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCGAA-G---ATTTTCTGATGCCCAACC--TGA-GATTCTGAG-ATTGAAAATAA-AGCCAACAAAACT
gi|7 : TGCATC-TCTGTTATATCTC-GATTTATCATT-AAA-CATG-CC--G-CC----------C-CT-------------TT-GA--C-ATCACGTGCA-TGGAAA-TGTT----T-T---AAA----GAA-----GAATTAGATG-CAAACTTGTAAACTGC-CAATTTTGACTTTGATCGACGAGA-TTGACGTACACTG--GTGGTAC-TCC----AAATA-TGT----T-TGCAC---ATC-TA----AA---G-----GCAACTAAAAGCAAAGCATTCTA--T--CAAAATAGTTCAA-ACTT-C----GG--TAAAAACACTCC-GTCGATGACATC-C----T----TT-GAATC-C-C---TA-G---TAGAA-GAATATTCTCTGATGCCCAAC-----------CTGAG-ATTGGAAACAA-AGCCAACAAAACT
gi|3 : cTGTATTATCTGTTACACCTC-AATTTTTCATT-GAA-CATG-CT--G-CCACCCCCACCCT-CT-------------TT-AG--T-ATCGGAAGCA-TGGACC-TTTT----CA------------AAA--CAGAATTCAATGACAAAAATGTAAATTGC-CAA------CTTTACTCGACGAAA-TCGATGCACACTG--CTGGCAC-CTT----AAATG-TGC----T-TGCAC---ATG-AA----AT---G-----GCAAAACG----------TCCTA--G--GGGAAAAGTTAAA-ACTC-A----AA--GGAAAACTCCCT---CAATGACATC-G----T----TT-GTATCAA-C---TA-GTCTTTGAA-G---ACTTTCCAGTGCCCAGCT--TGA-GATga
gi|10 : aatcactcttgattactgttgaaattattatgaactgtactttgtattaTGCATC-TTTCTTACATCTC-GATTTGTCATT-GAA-CATG-CT--G-CC----------CTCT-------------TC-GA--C-ATCACACGCA-TGGAGA-CATT------T-----C----AAAA--GAGAATTAGATcataaacaagccatatcaattaattatgatagtgagaggctatcttccctgcaagtttccagctttttccgttttctcagctactcatgttgtaagccgtaatttgaacataaacatatcgttactatgtggtattatcttttttctgcaagatatgaaacgtgaaagattta
gi|15 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtaTGCATC-TCAATT-----TC-GATTTGCCATTTAAA-CAAG-TC--G-CC----------C-CC-------------TTCGA--C-ATCACACGCATCGGAAA-CATT----CCC---AAA----GAGA-----------ATG-TAAAAT-----AG--C-CAACTTTG--TTTG----GCGGAA-TTGtgacgtacattggtggtacctcaaatatgcttgtgcatataatttagcaaaacattctagcaaaacatttaaaactctggaataaaactccgtcgatgacatcgtttgtatcccgtagaattcgaagactttacggtgcccagcctga
gi|9 : aatcacagttgagtattgttcatatcaattttaaattgtagctgttttaagtaTATT-TCTGTTACACCTA-GATTTATCATT-GAA-CATGTCT--GACC----------C-CT-------------TC-GA--C-ATTACATACA-TGGAAA-TATT----TTT---AAA----AAAAGAAAGAATTAGATG-CAAAATTGTAAAATGC-CAAGTTTGACTTTGTTAGGCAGAA-TCTACGTACAGTGGAGTGGTAC-CTC----AA-----ATATGTT-TGCAC---ATCTTATTGCAATTTA-----GCA---------------TCCTA--G--CAAAATTGTTCAA-ACTT------GGAAAAAAAACACTCC-ATCAAT-----------------------CC-C-C---TA-GAATTTGAA-G---ACTGTCTGGTGCCCAACA--TGA-GATTC-GAGAACTG-----AA-AGCCAACAAAta
gi|5 : TACT-TCTGTTACAACCG-AATCTGTCATT-GAA-CATG-CTGAG-TC----------C-CT-------------TG-GG--T-ATCGCAAGCA-TGGAAGCTATT------------C----GAAA--AACAAATAAATGACAAAATTGTAAAATGC-CA------ACTTTACTCGACGAAA-TTGATGCACACTG--CTGGCACGTTT----AAA-------------G-AC---A----A----AA----------CG---------------TCCTA--T--GGAAAGAGTTAAA-ACTT-C----AG--GAAAAAAACCC--ATCAATAACATC-GT---T----TT-GTATC-C-T---CATGAATTTGGC-G---AATTCTCGTTGCCCAGCC--TGATAATGTCGAC-A---AAAACAATAGCAAATAActgaa
gi|11 : cacttttgagtattgttgaaattattgtgaactgtgaatTAAC-TCTCTTACACCTTTGATTTGTCATT-GAAACATG-CC--GCCC----------C-CT-------------TT-GAATC-ACCACA-GCA-TGGAAA-TACA----TGT---GTATTTCAAAA--GAGAATTACA-G-TAAAATTGTAAAATGCGCAA-CTTG--TTTGA-----AGAATTTGA--TACACT---GTGGTAC-TTC----AA-----ATATGTT-TGTGC---ATC-TA----AA---GCAAA-GCA---------------TCC-A--G--CAAACCAGTTCAA-ATTT-TGGG-GG--AGGGAACTCC---ATTGA-GACATCAA----A----TG-GTA-C-C-C---TA-GA---C--A-G------------TGCCCAGGC--TGA-GA---TGAG------AAACAA---CCCACAAAttatgatagggaattactttcatcgctgcacgtttcaggttctcgttttctcaaaactattacatttaacgttgtaattaaaca
gi|1 : TTACACATC-AATTTGCTATT-GTA-CATA-TT--G-CC----------C-CCCCCCACCCCCACCTT-CA--CTGTCGCAACCA-TGGAAA-TATTTAAAAATTTCAAC----AACA--AAAAACTAAGTGACTGAATTGTAAAATGC-CAA------CTTTGCT---TGAAA--------A-ATTC--CTTGCAT-CTCCGAGAAACACTCCGTCGT-TG-AC---ATTGTA----AA---CTT---GTA---------------TCCTC--T---AGAATG--TGAAGACTTTC----GG--TG-------CCTAGTCAATGACATT-GGAAAC----TT-GTATC-CTC---TA-TAATATGAA-G---A-CTTCCGGTACTCAGTCAGTGA-TATTGTAAA-CTTGttgtaa
gi|12 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcACACCTC-GATTTATCATT-AAA-CATG-CC--G-CT----------C-CT-------------TC-CA--C-ATCACATGCA-TGGGAA-TATT------T---CAA----AAAC----GAATTAGATG-CAAAA--------------AGTTTGACTTTGATCGGTCTAA-TTGACGTACACTG--GTGTTAC-CTC----AAATA-TGT---TT-T-CAC---ATC-TA----AA---GGCAAAGCA---------------TCCTA--G--CACAATAGCT-AA-ACTT-CTAGTGA--AAAAAACACTCC-GTCGATGACATC-G----T----TT-GCATC-T-CCTATA-GAATTCGAA-G---ACTTTC----------------------CTGAG-ATTGAGAACAA-AACCAATAAAAtatcctctagaatgtgaagatttccctgtgcggagcctgaaattgtaaacaaacaacagctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|22 : TTTGTCATT-GAA-CATG-CT--G-CC----------C-CC-------------TT-ta
gi|10 : A-TTGACGTACATTG--GTGGTAC-CTC----AAATA-TGC---TTGTGCATATAATT-TAGC--AA---A-----ACA---------------TTCTA--G--CAAAACATTTAAA-ACTC-T----GG--AATAAA-ACTCC-GTCGATGACATC-G----T----TT-GTATC-C-CG--TA-GAATTCGAA-G---ACTTTACGGTGCCCAGCC--TGA-ccacagagcacg
gi|19 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtatgcatctttcttacatctcgatttgtcattgaacatgctgccctcttcgacatcacacgcatggagacatttcaaaagagaattag-TCGACGTACACTG--GTGCTAC-CTC----AAATA----------TGCAT---ATC-TA----AA---GGCAAAGCA---------------TCCTAGGTAGCAAAACAATTAAA-TCT---------------------CT-GTCCACAACATC-G----T----TT-GTATC-
gi|16 : at----AA---G-----CCA---------------TCCTA--T--CAAAACAGTTATA-ACGT-C----GG--AAAAAACTTCC---TCAATGACATT-G----T----TT-GTATC-CAC---TA-GAATTCGAA-G---ATTTTCCGG-----AACC--T----ACCCTGAG-ATTGAGAACAA-AGCCAGCAAAACT
gi|1 : -----GTA---------------TCCTC--T---ATAATA--TGAAGACTT-CC---GG--------TACTCA-GTCAGTGATATT-G----TAAACTT-GTATC-CTC---TA-GAATGTGAA-G---ATTTCCCTGTGC----------G-GAGCCTGAA-ATTGTAAACAA-A--CAACAgt
gi|17 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcttacacatcaatttgctattgtacatattgcccccccccacccccaccttcactgtcgcaaccatggaaatatttaaaaatttcaacaacaaaaaactaagtgactgaattgtaaaatgccaactttgcttgaaaaattccttgcatctccgagaaacactccgtcgttgacattgtaaacttgtatcctctagaatgtgaagactttcggtgcctagtcaatgacattggaaacttA---------------TCCTA--T--CAAA-CAGTTATA-ACGT-C----GG--AAAAAA-ACTTC-CTCAATG-CATT-G----T----TTTGTATC-A-C---TA-GAATTCGAAAG---ATTTTCCGGTACCTAACC--TGA---------G-ATTGAGAAC-A-AGCCAACAGAACTgctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|1 : T-C----CG--AGAAA-CACTCC-GTCGTTGACATT-G----TAAACTT-GTATC-CTC---TA-GAATGTGAA-G---ACTTTC-GGTGCCTAGTCAATGA-CATTg
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): CTAATTACAGTTAGTACATATAATCTCGATCAATTCCTGACTACTGGTAATATGCCGAACGTCGAGTAATTCCGATTGTCATATACGGTACCAATTACGGTAACTGATGTTTTATTGATTTAAAAGGCCTTCATCTGTTTATCTGGACAAATTAGCGGAAAAGAGAAATCATATAGCGATGAAATATGCCCTAGACTTCATGTCATCGTGTGTGTTATATTTTCTTATCGCAAAAAATGGCATGATCAACTGTAATGTTGTAGTGATGGCGGAGAGTACGATCTCAGGGGATGAGGGGCAGATCTCCACAGACAGATCAGGGGACGAGGACGATGACCCTACAGCTATCTCAGGGGACGAGGAGGAAGACTCCTTAGATAAATTAGGGGGTGAGGAGCAGGTAAGTCACTTCTACGTAAAATATTGTGTAGGTTTCAGGTAGTGTCATGTTCGTGTTCCAACATGCAGGACATATCTAATTATTGTATTTGCGATACTTGAGGAATTTACTGATTATTGTTCGAATA
Unaligned ( gi|4 ): CCCCTCCGCAACTCACTTGTCAAGGGGTTACTATGAAAGGGTCCCTGGTTTGATTCGCGTCCAGATCACATATTACAATTAACAATAAATCCGAGAATTTCGCCACATACAGTTAAGTTACGAAGATGGAAATAGACAATTCCCGATGACTTTTGTTGGACATGTCGAGAAATTTTCCAATCTTAACTTGATTCTTGTTTTATTTAGATGGAAAGTTCGTTAGTTGGGATGTAGATTCTAGATGAATTAACAGAAAAGTAGAATTATACGATGATGAAATAAGTCCTAGGATTAACGTCATCGCGTGTGTTTAATTTTTCCAGACAATGACGTGATCACTGTAATGGTCTAGTAATGGCGGAGAGTAAGGTATCCACCGGCAGCTCCGGTGACGAGGAGGAAGATTTCACCGACACCTCCGGTGACGAGGAGGGAGATTCCACAGATAGCTCAGGTGA
Unaligned ( gi|6 ): AGAAAAGGTATTAATGTATAGATGAATGAAATACAGTCCGTAATGATTAACGTCATTATCGCATGTGTTTGTTATTTTTCAGCAATGACGGGTGATCACTGAGTAATGGTCCTAGTAAGTGCGATAGCAAAATCTCCACCGACAGCCGGTGACGGGAGGCGGGTAGTCACTTTACGTAAACTAGTGTGTAAATTCATGTAGGTTGTGTAGTGGAGTTGCTTCAGCATGAATAAGTCTTTGCGATTATGTGAGTTCACCTTGTATTATGTTGAGATGGCATAAATGGAATAGATCACTATTGAGTATTATTAGTACTGTTATAATTGGTGGCTGTTAATTTGTAAACTGTTTCTATATGTATTCTCTAGATCTCC
Unaligned ( gi|13 ): AAGGGGTCCCTGGTTTGATTCCCGGGCCAGTCACAATTTACATACATAAATATCGAGATTTTCCCAAATACAGTTAGTACAGAAGATATAGACAATTCCCCGACGACTTGTTGTTCAGAAAATATCGAGAAATTTTCAATCATAATTGATTTTGTTTATTTAGATGGAGTTCGATAGTTTATCTAGATGAATTAGCAGAAAAGTAGAATTATATGATGATGAAATAAGTCCTATGATTAACGTCATCG
Unaligned ( gi|14 ): AAGAAAAGTGGAATCATAGATGATGAAATGTGTCCTAGGATTAACGTCATTGTGTTTCAAATCTTCAGACAATGACGTGATCACTGTAACAAACAAGTAATGGCGGAGAGCAAGATCTCCGACGACAGCTCCGGTGACGAGGAGGACGATTCCACAGATAGCCCTGGTGATGAGGGGCGG
Unaligned ( gi|18 ): GGCAAAGTATATTCTAGATTTAACATTATCGCATATGCATTTTTATGACGTGGTCACGTTTTTTGTTCAAATGGCGGAGAGCAAGATCTCTGCACATAGTTCAGGAGACAAGGA
Unaligned ( gi|20 ): GCTCCGTCAATGCACGTTTGATCGCTAAAATCGAAGCCTTTCCGGTGCCAATCCTGAAGATTAGGAACAGAGTGTTAATCGTAAAACTAGATAAATT
Unaligned ( gi|21 ): ATTGTTTGAACTGCAGTGCTTATTGAATCATACATCAAAATGCAATATT
Alignments
lowQualScore : 2222222222 22222222222 11111111 2222222222222222 1 333333 333333333 1111 5555555555555555555 11111 111111 1 111111111 4444444444
lowQualScore : 4 3 3 666 55 4444444444 3 44444444444 55 0 4 4 4 44444444 1111111111111111 77 1 4 4 2 0 4 4 222222 1 3 0 66 0 888 4 8888 333333333 4 777 8 2222 9999999999999999999 88888 00000 0 2 222222 666 0 0 2 2 000000000 2 2 9 888 3 0 3 555 2 5555555555 3 0 55 4
lowQualScore : . . . ... .. .......... . ........... .. . . . . ........ ................ .. . . . . . . . ...... . . . .. . ... . .... ......... . ... . .... ................... ..... ..... . . ...... ... . . . . ......... . . . ... . . . ... . .......... . . .. .
lowQualScore : 0 6 6 444 00 5555555555 6 55555555555 00 2 5 0 0 55555555 5555555555555555 88 6 0 5 0 9 4 4 999999 0 7 9 11 7 000 0 5555 444444444 0 000 0 7777 7777777777777777777 33333 22222 8 3 777777 333 1 6 1 9 666666666 9 9 2 555 1 5 1 444 6 3333333333 6 6 00 0
consensus : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TTT-C---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGA-GA--CT-GAGATTGAGAAC--AA-AGCCAACAAAACT
Reference ( family-2480 ) : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCANGCAT-GGAAA-TA--------TTT-T---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGA-GA-TCT-GAGATTGAGAAC--AA-AGCCAACAAAACT
gi|1 : TTACACATC-AATTTGCTATT-GTA-CATATTGCC--C----------CCC-CCCACCCCCACCTTCAC--TGTCGCAACCAT-GGAAA-TA--------TTT-A---AAAATTTCAACAACAAAAAACTAAG-TGACTGAATTGTAAAAT-GC-CAA------CTTTGCTTG----AA--------AAATTC--CTTGCAT-CTCCGAGAAACACTC---CGTCGT-TG-AC---ATTGTA----AA---CTT-------------GTA-----TCCTC--T---AGAAT-GTGAAGACTTTC----GG--------TGCCTAGTCAATGACATT-GGAAAC----TT-GTATC-CTC---TA-TAATATG-AAG---AC-TTCCGGTACTCAGTC--A-G----T-GATATTGTAAAC--
gi|1 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcACTCAGTCAGTGATATT-G----TAAACTT-GTATC-CTC---TA-GAATGTG-AAG---ATTTCCCTGTGCGGAGC---------CT-GAAATTGTAAAC--AA-A--CAACAttgtatcctctagaatgtgaagatttccctgtgcggagcctgaaattgtaaacaaacaacagctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcttacacatcaatttgctattgtacatattgcccccccccacccccaccttcactgtcgcaaccatggaaatatttaaaaatttcaacaacaaaaaactaagtgactgaattgtaaaatgccaactttgcttgaaaaattccttgcatctccgagaaacactccgtcgttgacattgtaaacttgtatcctctagaatgtgaagactttcggtgcctagtcaatgacattggaaacttgtatcctctataatatgaagacttccggtTGCATCTTTCTTACATCTC-GATTTGTCATT-GAA-CAT---GCT--G----------CCCTC-----------TTCGA--CATCACACGCAT-GGAGA-CA--------TTT-C------A-------AA-AGAGAATTAGATTGACgctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtaATT-GACGTACATTG--GTGGTAC-CTC----AAATATGC---T----TGTGCATATAATT-TAGC--AA---A---------------ACA-----TTCTA--G--CAAAACATTTAAAACTC-T----GG--AATAAA-ACTCCGTCGATGACATC-G----T----TT-GTATC-C-CG--TA-GAATTCG-AAG---ACTTTACGGTGCCCAGCCTGA-gtacattggtggtacctcaaatatgcttgtgcatataatttagcaaaacattctagcaaaacatttaaaactctggaataaaactccgtcgatgacatcgtttgtatcccgtagaattcgaagactttacggtgcccagcctga
gi|11 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtatgcatctttcttacatctcgatttgtcattgaacatgctgccctcttcgacatcacacgcatggagacatttcaaaagagaattagCTCTCTTACACCTTTGATTTGTCATT-GAAACAT---GCC--G----------CCC-CC----------TTTGAATCACCACA-GCAT-GGAAA-TACATGTGTATTT-C---AAAA-------GA----GAATTACA---GTAAAATTGTAAAAT-GCGCAA-CTTG--TTTGA-----AGAATTTGA--TACACTG---TGGTAC-TTC----AAATATG----T----T-TGTGC---ATC-TA----AA---GCAAA-----------GCA-----TCC-A--G--CAAACCAGTTCAAATTT-TG---GG--GGAGGGAACTCCATTGA-GACATCAA----A----TG-GTA-C-C-C---TA-GA------------------CAGTGCCCAGGCTGA-GA---T-GAGA-----AAC--AA---CCCACAAA
gi|12 : taaACACCTC-GATTTATCATT-AAA-CAT---GCC--G----------CTC-C-----------TTCCA--CATCACATGCAT-GGGAA-TA--------TTT-C---AAAA-------AC----GAATTAGA-TG-CAAAA--------------AG-TTTGACTTTGATCGGTCTAATT-GACGTACACTG--GTGTTAC-CTC----AAATATGT---T----T-T-CAC---ATC-TA----AA---GGCAAA----------GCA-----TCCTA--G--CACAATAGCT-AAACTT-CTAGTGA--AAAAAACACTCCGTCGATGACATC-G----T----TT-GCATC-T-CCTATA-GAATTCG-AAG---ACTTTC--------------------CT-GAGATTGAGAAC--AA-AACCAATAAAAttgtaa
gi|15 : TGCATCTCAATT-----TC-GATTTGCCATTTAAA-CAA---GTC--G----------CCC-CC----------TTCGA--CATCACACGCATCGGAAA-CA--------TTC-C---CAAA-------GA-GAA------------------TGTAAAATAGC-CA------ACTTTGTTTGGCGGAATT-Gta
gi|16 : aatcacagttgagtattgttcatatcaattttaaattgtagctgttttaagta----AA---G---------------CCA-----TCCTA--T--CAAAACAGTTATAACGT-C----GG--AAAAAAC-TTCC-TCAATGACATT-G----T----TT-GTATC-CAC---TA-GAATTCG-AAG---ATTTTCCGGAACCTA-CC--------CT-GAGATTGAGAAC--AA-AGCCAGCAAAACTta
gi|17 : A-----TCCTA--T--CAAA-CAGTTATAACGT-C----GG--AAAAAA-ACTTCCTCAATG-CATT-G----T----TTTGTATC-A-C---TA-GAATTCGAAAG---ATTTTCCGGTACCTAAC---------CT-GAGATTGAGAAC---A-AGCCAACAGAACTgt
gi|19 : TC-GACGTACACTG--GTGCTAC-CTC----AAATA-------------TGCAT---ATC-TA----AA---GGCAAA----------GCA-----TCCTAGGTAGCAAAACAATTAAA--T-------------------CTCTGTCCACAACATC-G----T----TT-GTATC-g
gi|20 : atCTCCGTCAATG-CA-C-G----T----TT-G-ATC-G-C---TA-AAAT-CG-AAG---CCTTTCCGGTGCCAATCCTGA---------AGATTAGGAAC--AG-AG
gi|22 : gTTTGTCATT-GAA-CAT---GCT--GC---------CCC-C-----------TTCCA--CAGAGCACGtgttaatcgtaaaactagataaatt
gi|3 : TCTGTTACACCTC-AATTTTTCATT-GAA-CAT---GCT--GCCACCCCCACCCT-C-----------TTTAG--TATCGGAAGCAT-GG--A-CC--------TTT-T-----CA-------AA-ACAGAATTCAA-TGACAAAAATGTAAATT-GC-CA------ACTTTACTCGACGAAATC-GATGCACACTG--CTGGCAC-CTT----AAATGTGC--------T-TGCAC---ATG-AA----AT---G---------------GCAAAACGTCCTA--G--GGGAAAAGTTAAAAC-T-C----AA--AGGAAA-ACTCCCTCAATGACATC-G----T----TT-GTATCAA-C---TA-GTCTTTG-AAG---ACTTTCCAGTGCCCAGCTTGA-GA-TC
gi|5 : aatcactcttgattactgttgaaattattatgaactgtactttgtattatgtattaTCTGTTACAACCG-AATCTGTCATT-GAA-CAT---GCT--GAG--------TCC-C-----------TTGGG--TATCGCAAGCAT-GGAAGCTA--------TTC-G---AAAA-------AC-AAA----TAAA-TGACAAAATTGTAAAAT-GC-CA------ACTTTACTCGACGAAATT-GATGCACACTG--CTGGCACGTTT----AAA---G--------------AC---A----A----AA--------------------CG-----TCCTA--T--GGAAAGAGTTAAAACTT-C----AG--GAAAAAAAC-CCATCAATAACATC-GT---T----TT-GTATC-C-T---CATGAATTTG-GCG---AATTCTCGTTGCCCAGCCTGATAA-TGTCGACA---AAAAC--AATAGCAAATAAataaacaagccatatcaattaattatgatagtgagaggctatcttccctgcaagtttccagctttttccgttttctcagctactcatgttgtaagccgtaatttgaacataaacatatcgttactatgtggtattatcttttttctgcaagatatgaaacgtgaaagattta
gi|7 : cacttttgagtattgttgaaattattgtgaactgtgaattactTGCATCTCTGTTATATCTC-GATTTATCATT-AAA-CAT---GCC--G----------CCC-C-----------TTTGA--CATCACGTGCAT-GGAAA-TG--------TTT-T------A-------AA-GAAGAATTAGA-TG-CAAACTTGTAAACT-GC-CAATTTTGACTTTGATCGACGAGATT-GACGTACACTG--GTGGTAC-TCC----AAATATG----T----T-TGCAC---ATC-TA----AA---GGCAACTAAAAGCAAAGCA-----TTCTA--T--CAAAATAGTTCAAACTT-C----GG--TAAAAACACTCCGTCGATGACATC-C----T----TT-GAATC-C-C---TA-G---TAG-AAGAATATTCTCTGATGCCCAAC---------CT-GAGATTGGAAAC--AA-AGCCAACAAAACTttatgatagggaattactttcatcgctgcacgtttcaggttctcgttttctcaaaactattacatttaacgttgtaattaaaca
gi|8 : cTGTATCTCTGTTACACCTC-AATTTATCATT-GAA-CAT---GCT--G----------CCC-C-----------TTTGA--CATCATACGCAG-GGAAA-TA--------TTAAT---AAAA-------AA-AAAGAAGTAGA-TG-CAAAATTGTAAAGT-AC-CAAGTTTGACTTTGATCAGTGGAATT-GACGTACACTG--GTGGTAC-CTC----AAATATATATAT----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAATAGTTGAAACTT-C----GG--AGAAAACACCCTGTCAATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCG-AAG---ATTTTCTGATGCCCAACCTGA-GATTCT-GAGATTGAAAAT--AA-AGCCAACAAAACTga
gi|9 : ATTTCTGTTACACCTA-GATTTATCATT-GAA-CAT---GTCTGA----------CCC-C-----------TTCGA--CATTACATACAT-GGAAA-TA--------TTT-TTAAAAAA-------AG-AAAGAATTAGA-TG-CAAAATTGTAAAAT-GC-CAAGTTTGACTTTGTTAGGCAGAATC-TACGTACAGTGGAGTGGTAC-CTC----AAATATG----T----T-TGCAC---ATCTTATTGCAATTTA---------------GCA-----TCCTA--G--CAAAATTGTTCAAACTT------GGAAAAAAAACACTCCATCAAT-----------------------CC-C-C---TA-GAATTTG-AAG---ACTGTCTGGTGCCCAACATGA-GA-T-------TCGAGAACTGAA-AGCCAACAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTAATTACAGTTAGTACATATAATCTCGATCAATTCCTGACTACTGGTAATATGCCGAACGTCGAGTAATTCCGATTGTCATATACGGTACCAATTACGGTAACTGATGTTTTATTGATTTAAAAGGCCTTCATCTGTTTATCTGGACAAATTAGCGGAAAAGAGAAATCATATAGCGATGAAATATGCCCTAGACTTCATGTCATCGTGTGTGTTATATTTTCTTATCGCAAAAAATGGCATGATCAACTGTAATGTTGTAGTGATGGCGGAGAGTACGATCTCAGGGGATGAGGGGCAGATCTCCACAGACAGATCAGGGGACGAGGACGATGACCCTACAGCTATCTCAGGGGACGAGGAGGAAGACTCCTTAGATAAATTAGGGGGTGAGGAGCAGGTAAGTCACTTCTACGTAAAATATTGTGTAGGTTTCAGGTAGTGTCATGTTCGTGTTCCAACATGCAGGACATATCTAATTATTGTATTTGCGATACTTGAGGAATTTACTGATTATTGTTCGAATA
Unaligned ( gi|4 ): CCCCTCCGCAACTCACTTGTCAAGGGGTTACTATGAAAGGGTCCCTGGTTTGATTCGCGTCCAGATCACATATTACAATTAACAATAAATCCGAGAATTTCGCCACATACAGTTAAGTTACGAAGATGGAAATAGACAATTCCCGATGACTTTTGTTGGACATGTCGAGAAATTTTCCAATCTTAACTTGATTCTTGTTTTATTTAGATGGAAAGTTCGTTAGTTGGGATGTAGATTCTAGATGAATTAACAGAAAAGTAGAATTATACGATGATGAAATAAGTCCTAGGATTAACGTCATCGCGTGTGTTTAATTTTTCCAGACAATGACGTGATCACTGTAATGGTCTAGTAATGGCGGAGAGTAAGGTATCCACCGGCAGCTCCGGTGACGAGGAGGAAGATTTCACCGACACCTCCGGTGACGAGGAGGGAGATTCCACAGATAGCTCAGGTGA
Unaligned ( gi|6 ): AGAAAAGGTATTAATGTATAGATGAATGAAATACAGTCCGTAATGATTAACGTCATTATCGCATGTGTTTGTTATTTTTCAGCAATGACGGGTGATCACTGAGTAATGGTCCTAGTAAGTGCGATAGCAAAATCTCCACCGACAGCCGGTGACGGGAGGCGGGTAGTCACTTTACGTAAACTAGTGTGTAAATTCATGTAGGTTGTGTAGTGGAGTTGCTTCAGCATGAATAAGTCTTTGCGATTATGTGAGTTCACCTTGTATTATGTTGAGATGGCATAAATGGAATAGATCACTATTGAGTATTATTAGTACTGTTATAATTGGTGGCTGTTAATTTGTAAACTGTTTCTATATGTATTCTCTAGATCTCC
Unaligned ( gi|13 ): AAGGGGTCCCTGGTTTGATTCCCGGGCCAGTCACAATTTACATACATAAATATCGAGATTTTCCCAAATACAGTTAGTACAGAAGATATAGACAATTCCCCGACGACTTGTTGTTCAGAAAATATCGAGAAATTTTCAATCATAATTGATTTTGTTTATTTAGATGGAGTTCGATAGTTTATCTAGATGAATTAGCAGAAAAGTAGAATTATATGATGATGAAATAAGTCCTATGATTAACGTCATCG
Unaligned ( gi|14 ): AAGAAAAGTGGAATCATAGATGATGAAATGTGTCCTAGGATTAACGTCATTGTGTTTCAAATCTTCAGACAATGACGTGATCACTGTAACAAACAAGTAATGGCGGAGAGCAAGATCTCCGACGACAGCTCCGGTGACGAGGAGGACGATTCCACAGATAGCCCTGGTGATGAGGGGCGG
Unaligned ( gi|18 ): GGCAAAGTATATTCTAGATTTAACATTATCGCATATGCATTTTTATGACGTGGTCACGTTTTTTGTTCAAATGGCGGAGAGCAAGATCTCTGCACATAGTTCAGGAGACAAGGA
Unaligned ( gi|21 ): ATTGTTTGAACTGCAGTGCTTATTGAATCATACATCAAAATGCAATATT
Alignments
lowQualScore : 2222222222 22222222222 11111111 111111111111111 1 333333 333333333 1111 5555555555555555555 11111 111111 1 111111111 22222222222
lowQualScore : 4 3 3 666 55 4444444444 3 44444444444 55 0 5 4 4 44444444 55 888888888888888 77 1 4 4 2 0 4 4 222222 1 3 0 66 0 888 4 8888 333333333 4 777 8 2222 9999999999999999999 88888 00000 0 2 222222 666 0 0 2 2 333333333 2 9 888 3 0 3 555 99999999999 7777 55 4
lowQualScore : . . . ... .. .......... . ........... .. . . . . ........ .. ............... .. . . . . . . . ...... . . . .. . ... . .... ......... . ... . .... ................... ..... ..... . . ...... ... . . . . ......... . . ... . . . ... ........... .... .. .
lowQualScore : 0 6 6 444 00 5555555555 6 55555555555 00 2 7 0 0 55555555 55 777777777777777 88 6 0 5 0 9 4 4 999999 0 7 9 11 7 000 0 5555 444444444 0 000 0 7777 7777777777777777777 33333 22222 8 3 777777 333 1 6 1 9 555555555 9 2 555 1 5 1 444 22222222222 0000 00 0
consensus : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGAGA--CTGAGATTG---AGAAC--AA-AGCCAACAAAACT
Reference ( family-2480 ) : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGAGA--CTGAGATTG---AGAAC--AA-AGCCAACAAAACT
gi|1 : TTACACATC-AATTTGCTATT-GTA-CATATTGCC--C----------CCC-CCCACCCCCACCTTCAC--TGTCGCAACCAT-GGAAA-TA--------TT--TA---AAAATTTCAACAACAAAAAACTAAG-TGACTGAATTGTAAAAT-GC-CAA------CTTTGCTTG----AA--------AAATTC--CTTGCAT-CTCCGAGAAACACTC---CGTCGT-TG-AC---ATTGTA----AA---CTT-------------GTA-----TCCTC--T---AGAAT-GTGAAGACTTTC----GG--------TGCCTAGTCAATGACATT-GGAAAC----TTGTATC-CTC---TA-TAATATG-AAG---AC-TTCCGGTACTCAGTC--AG----TGATATTG---TAAAC--
gi|1 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcACTCAGTCAGTGATATT-G----TAAACTTGTATC-CTC---TA-GAATGTG-AAG---ATTTCCCTGTGC---G---GAGC--CTGAAATTG---TAAAC--AA-A--CAACAttgtatcctctagaatgtgaagatttccctgtgcggagcctgaaattgtaaacaaacaacagctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcttacacatcaatttgctattgtacatattgcccccccccacccccaccttcactgtcgcaaccatggaaatatttaaaaatttcaacaacaaaaaactaagtgactgaattgtaaaatgccaactttgcttgaaaaattccttgcatctccgagaaacactccgtcgttgacattgtaaacttgtatcctctagaatgtgaagactttcggtgcctagtcaatgacattggaaacttgtatcctctataatatgaagacttccggtTGCATCTTTCTTACATCTC-GATTTGTCATT-GAA-CAT---GCT--G----------CCCTC-----------TTCGA--CATCACACGCAT-GGAGA-CA--------TT--TC------A-------AA-AGAGAATTAGATTGACgctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtaATT-GACGTACATTG--GTGGTAC-CTC----AAATATGC---T----TGTGCATATAATT-TAGC--AA---A---------------ACA-----TTCTA--G--CAAAACATTTAAAACTC-T----GG--AATAAA-ACTCCGTCGATGACATC-G----T----TTGTATC-C-CG--TA-GAATTCG-AAG---ACTTTACGGTGCCCAGCCTGAgtacattggtggtacctcaaatatgcttgtgcatataatttagcaaaacattctagcaaaacatttaaaactctggaataaaactccgtcgatgacatcgtttgtatcccgtagaattcgaagactttacggtgcccagcctga
gi|11 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtatgcatctttcttacatctcgatttgtcattgaacatgctgccctcttcgacatcacacgcatggagacatttcaaaagagaattagCTCTCTTACACCTTTGATTTGTCATT-GAAACAT---GCC--G----------CCC-CC----------TTTGAATCACCACA-GCAT-GGAAA-TACATGTGTATT--TC---AAAA-------GA----GAATTACA---GTAAAATTGTAAAAT-GCGCAA-CTTG--TTTGA-----AGAATTTGA--TACACTG---TGGTAC-TTC----AAATATG----T----T-TGTGC---ATC-TA----AA---GCAAA-----------GCA-----TCC-A--G--CAAACCAGTTCAAATTT-TG---GG--GGAGGGAACTCCATTGA-GACATCAA----A----TGGTA-C-C-C---TA-GA------------------CAGTGCCCAGGCTGAGA---TGAGA--------AAC--AA---CCCACAAA
gi|12 : taaACACCTC-GATTTATCATT-AAA-CAT---GCC--G----------CTC-C-----------TTCCA--CATCACATGCAT-GGGAA-TA--------TT--TC---AAAA-------AC----GAATTAGA-TG-CAAAA--------------AG-TTTGACTTTGATCGGTCTAATT-GACGTACACTG--GTGTTAC-CTC----AAATATGT---T----T-T-CAC---ATC-TA----AA---GGCAAA----------GCA-----TCCTA--G--CACAATAGCT-AAACTT-CTAGTGA--AAAAAACACTCCGTCGATGACATC-G----T----TTGCATC-T-CCTATA-GAATTCG-AAG---ACTTTC-------------------CTGAGATTG---AGAAC--AA-AACCAATAAAAttgtaa
gi|15 : TGCATCTCAATT-----TC-GATTTGCCATTTAAA-CAA---GTC--G----------CCC-CC----------TTCGA--CATCACACGCATCGGAAA-CA--------TT--CC---CAAA-------GA-GAA------------------TGTAAAATAGC-CA------ACTTTGTTTGGCGGAATT-Gta
gi|16 : aatcacagttgagtattgttcatatcaattttaaattgtagctgttttaagta----AA---G---------------CCA-----TCCTA--T--CAAAACAGTTATAACGT-C----GG--AAAAAAC-TTCC-TCAATGACATT-G----T----TTGTATC-CAC---TA-GAATTCG-AAG---ATTTTCCGGAACCTA-CC-------CTGAGATTG---AGAAC--AA-AGCCAGCAAAACTta
gi|17 : A-----TCCTA--T--CAAA-CAGTTATAACGT-C----GG--AAAAAA-ACTTCCTCAATG-CATT-GT---T----TTGTATC-A-C---TA-GAATTCGAAAG---ATTTTCCGGTACCTAAC--------CTGAGATTG---AGAAC---A-AGCCAACAGAACTgt
gi|19 : TC-GACGTACACTG--GTGCTAC-CTC----AAATA-------------TGCAT---ATC-TA----AA---GGCAAA----------GCA-----TCCTAGGTAGCAAAACAATTAAA--T-------------------CTCTGTCCACAACATC-G----T----TTGTATC-g
gi|20 : atCTCCGTCAATG-CA-C-G----T----TTG-ATC-G-C---TA-AAAT-CG-AAG---CCTTTCCGGTGCCAATCCTGA-------AGATTA---GGAAC--AG-AG
gi|22 : gTTTGTCATT-GAA-CAT---GCT--GC---------CCC-C-----------TTCCA--CAGAGCACGtgttaatcgtaaaactagataaatt
gi|3 : TCTGTTACACCTC-AATTTTTCATT-GAA-CAT---GCT--GCCACCCCCACCCT-C-----------TTTAG--TATCGGAAGCAT-GGACC-T---------TT--TC------A-------AA-ACAGAATTCAA-TGACAAAAATGTAAATT-GC-CA------ACTTTACTCGACGAAATC-GATGCACACTG--CTGGCAC-CTT----AAATGTGC--------T-TGCAC---ATG-AA----AT---G---------------GCAAAACGTCCTA--G--GGGAAAAGTTAAAAC-T-C----AA--AGGAAA-ACTCCCTCAATGACATC-G----T----TTGTATCAA-C---TA-GTCTTTG-AAG---ACTTTCCAGTGCCCAGCTTGAGA--
gi|5 : aatcactcttgattactgttgaaattattatgaactgtactttgtattatgtattaTCTGTTACAACCG-AATCTGTCATT-GAA-CAT---GCT--GAG--------TCC-C-----------TTGGG--TATCGCAAGCAT-GGAAGCTA--------TT--CG---AAAA-------AC-AAA----TAAA-TGACAAAATTGTAAAAT-GC-CA------ACTTTACTCGACGAAATT-GATGCACACTG--CTGGCACGTTT----AAA---G--------------AC---A----A----AA--------------------CG-----TCCTA--T--GGAAAGAGTTAAAACTT-C----AG--GAAAAAAAC-CCATCAATAACATC-GT---T----TTGTATC-C-T---CATGAATTTG-GCG---AATTCTCGTTGCCCAGCCTGATA--ATG---TCGACAAAAAC--AATAGCAAATAAtcataaacaagccatatcaattaattatgatagtgagaggctatcttccctgcaagtttccagctttttccgttttctcagctactcatgttgtaagccgtaatttgaacataaacatatcgttactatgtggtattatcttttttctgcaagatatgaaacgtgaaagattta
gi|7 : cacttttgagtattgttgaaattattgtgaactgtgaattactTGCATCTCTGTTATATCTC-GATTTATCATT-AAA-CAT---GCC--G----------CCC-C-----------TTTGA--CATCACGTGCAT-GGAAA-TG--------TT--TT------A-------AA-GAAGAATTAGA-TG-CAAACTTGTAAACT-GC-CAATTTTGACTTTGATCGACGAGATT-GACGTACACTG--GTGGTAC-TCC----AAATATG----T----T-TGCAC---ATC-TA----AA---GGCAACTAAAAGCAAAGCA-----TTCTA--T--CAAAATAGTTCAAACTT-C----GG--TAAAAACACTCCGTCGATGACATC-C----T----TTGAATC-C-C---TA-G---TAG-AAGAATATTCTCTGATGCCCAAC--------CTGAGATTG---GAAAC--AA-AGCCAACAAAACTttatgatagggaattactttcatcgctgcacgtttcaggttctcgttttctcaaaactattacatttaacgttgtaattaaaca
gi|8 : cTGTATCTCTGTTACACCTC-AATTTATCATT-GAA-CAT---GCT--G----------CCC-C-----------TTTGA--CATCATACGCAG-GGAAA-TA--------TTAAT----AAAA-------AA-AAAGAAGTAGA-TG-CAAAATTGTAAAGT-AC-CAAGTTTGACTTTGATCAGTGGAATT-GACGTACACTG--GTGGTAC-CTC----AAATATATATAT----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAATAGTTGAAACTT-C----GG--AGAAAACACCCTGTCAATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ATTTTCTGATGCCCAACCTGAGATTCTGAGATTG---AAAAT--AA-AGCCAACAAAACTga
gi|9 : ATTTCTGTTACACCTA-GATTTATCATT-GAA-CAT---GTCTGA----------CCC-C-----------TTCGA--CATTACATACAT-GGAAA-TA--------TT--TTTAAAAAA-------AG-AAAGAATTAGA-TG-CAAAATTGTAAAAT-GC-CAAGTTTGACTTTGTTAGGCAGAATC-TACGTACAGTGGAGTGGTAC-CTC----AAATATG----T----T-TGCAC---ATCTTATTGCAATTTA---------------GCA-----TCCTA--G--CAAAATTGTTCAAACTT------GGAAAAAAAACACTCCATCAAT----------------------CC-C-C---TA-GAATTTG-AAG---ACTGTCTGGTGCCCAACATGAGA--T-----TCG---AGAACTGAA-AGCCAACAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTAATTACAGTTAGTACATATAATCTCGATCAATTCCTGACTACTGGTAATATGCCGAACGTCGAGTAATTCCGATTGTCATATACGGTACCAATTACGGTAACTGATGTTTTATTGATTTAAAAGGCCTTCATCTGTTTATCTGGACAAATTAGCGGAAAAGAGAAATCATATAGCGATGAAATATGCCCTAGACTTCATGTCATCGTGTGTGTTATATTTTCTTATCGCAAAAAATGGCATGATCAACTGTAATGTTGTAGTGATGGCGGAGAGTACGATCTCAGGGGATGAGGGGCAGATCTCCACAGACAGATCAGGGGACGAGGACGATGACCCTACAGCTATCTCAGGGGACGAGGAGGAAGACTCCTTAGATAAATTAGGGGGTGAGGAGCAGGTAAGTCACTTCTACGTAAAATATTGTGTAGGTTTCAGGTAGTGTCATGTTCGTGTTCCAACATGCAGGACATATCTAATTATTGTATTTGCGATACTTGAGGAATTTACTGATTATTGTTCGAATA
Unaligned ( gi|4 ): CCCCTCCGCAACTCACTTGTCAAGGGGTTACTATGAAAGGGTCCCTGGTTTGATTCGCGTCCAGATCACATATTACAATTAACAATAAATCCGAGAATTTCGCCACATACAGTTAAGTTACGAAGATGGAAATAGACAATTCCCGATGACTTTTGTTGGACATGTCGAGAAATTTTCCAATCTTAACTTGATTCTTGTTTTATTTAGATGGAAAGTTCGTTAGTTGGGATGTAGATTCTAGATGAATTAACAGAAAAGTAGAATTATACGATGATGAAATAAGTCCTAGGATTAACGTCATCGCGTGTGTTTAATTTTTCCAGACAATGACGTGATCACTGTAATGGTCTAGTAATGGCGGAGAGTAAGGTATCCACCGGCAGCTCCGGTGACGAGGAGGAAGATTTCACCGACACCTCCGGTGACGAGGAGGGAGATTCCACAGATAGCTCAGGTGA
Unaligned ( gi|6 ): AGAAAAGGTATTAATGTATAGATGAATGAAATACAGTCCGTAATGATTAACGTCATTATCGCATGTGTTTGTTATTTTTCAGCAATGACGGGTGATCACTGAGTAATGGTCCTAGTAAGTGCGATAGCAAAATCTCCACCGACAGCCGGTGACGGGAGGCGGGTAGTCACTTTACGTAAACTAGTGTGTAAATTCATGTAGGTTGTGTAGTGGAGTTGCTTCAGCATGAATAAGTCTTTGCGATTATGTGAGTTCACCTTGTATTATGTTGAGATGGCATAAATGGAATAGATCACTATTGAGTATTATTAGTACTGTTATAATTGGTGGCTGTTAATTTGTAAACTGTTTCTATATGTATTCTCTAGATCTCC
Unaligned ( gi|13 ): AAGGGGTCCCTGGTTTGATTCCCGGGCCAGTCACAATTTACATACATAAATATCGAGATTTTCCCAAATACAGTTAGTACAGAAGATATAGACAATTCCCCGACGACTTGTTGTTCAGAAAATATCGAGAAATTTTCAATCATAATTGATTTTGTTTATTTAGATGGAGTTCGATAGTTTATCTAGATGAATTAGCAGAAAAGTAGAATTATATGATGATGAAATAAGTCCTATGATTAACGTCATCG
Unaligned ( gi|14 ): AAGAAAAGTGGAATCATAGATGATGAAATGTGTCCTAGGATTAACGTCATTGTGTTTCAAATCTTCAGACAATGACGTGATCACTGTAACAAACAAGTAATGGCGGAGAGCAAGATCTCCGACGACAGCTCCGGTGACGAGGAGGACGATTCCACAGATAGCCCTGGTGATGAGGGGCGG
Unaligned ( gi|18 ): GGCAAAGTATATTCTAGATTTAACATTATCGCATATGCATTTTTATGACGTGGTCACGTTTTTTGTTCAAATGGCGGAGAGCAAGATCTCTGCACATAGTTCAGGAGACAAGGA
Unaligned ( gi|21 ): ATTGTTTGAACTGCAGTGCTTATTGAATCATACATCAAAATGCAATATT
Alignments
lowQualScore : 2222222222 22222222222 11111111 111111111111111 1 333333 333333333 1111 5555555555555555555 11111 111111 1 111111111 22222222222
lowQualScore : 4 3 3 666 55 4444444444 3 44444444444 55 0 5 4 4 44444444 55 888888888888888 77 1 4 4 2 0 4 4 222222 1 3 0 66 0 888 4 8888 333333333 4 777 8 2222 9999999999999999999 88888 00000 0 2 222222 666 0 0 2 2 333333333 2 9 888 3 0 3 555 99999999999 7777 55 4
lowQualScore : . . . ... .. .......... . ........... .. . . . . ........ .. ............... .. . . . . . . . ...... . . . .. . ... . .... ......... . ... . .... ................... ..... ..... . . ...... ... . . . . ......... . . ... . . . ... ........... .... .. .
lowQualScore : 0 6 6 444 00 5555555555 6 55555555555 00 2 7 0 0 55555555 55 777777777777777 88 6 0 5 0 9 4 4 999999 0 7 9 11 7 000 0 5555 444444444 0 000 0 7777 7777777777777777777 33333 22222 8 3 777777 333 1 6 1 9 555555555 9 2 555 1 5 1 444 22222222222 0000 00 0
consensus : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGAGA--CTGAGATTG---AGAAC--AA-AGCCAACAAAACT
Reference ( family-2480 ) : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGAGA--CTGAGATTG---AGAAC--AA-AGCCAACAAAACT
gi|1 : TTACACATC-AATTTGCTATT-GTA-CATATTGCC--C----------CCC-CCCACCCCCACCTTCAC--TGTCGCAACCAT-GGAAA-TA--------TT--TA---AAAATTTCAACAACAAAAAACTAAG-TGACTGAATTGTAAAAT-GC-CAA------CTTTGCTTG----AA--------AAATTC--CTTGCAT-CTCCGAGAAACACTC---CGTCGT-TG-AC---ATTGTA----AA---CTT-------------GTA-----TCCTC--T---AGAAT-GTGAAGACTTTC----GG--------TGCCTAGTCAATGACATT-GGAAAC----TTGTATC-CTC---TA-TAATATG-AAG---AC-TTCCGGTACTCAGTC--AG----TGATATTG---TAAAC--
gi|1 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcACTCAGTCAGTGATATT-G----TAAACTTGTATC-CTC---TA-GAATGTG-AAG---ATTTCCCTGTGC---G---GAGC--CTGAAATTG---TAAAC--AA-A--CAACAttgtatcctctagaatgtgaagatttccctgtgcggagcctgaaattgtaaacaaacaacagctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcttacacatcaatttgctattgtacatattgcccccccccacccccaccttcactgtcgcaaccatggaaatatttaaaaatttcaacaacaaaaaactaagtgactgaattgtaaaatgccaactttgcttgaaaaattccttgcatctccgagaaacactccgtcgttgacattgtaaacttgtatcctctagaatgtgaagactttcggtgcctagtcaatgacattggaaacttgtatcctctataatatgaagacttccggtTGCATCTTTCTTACATCTC-GATTTGTCATT-GAA-CAT---GCT--G----------CCCTC-----------TTCGA--CATCACACGCAT-GGAGA-CA--------TT--TC------A-------AA-AGAGAATTAGATTGACgctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtaATT-GACGTACATTG--GTGGTAC-CTC----AAATATGC---T----TGTGCATATAATT-TAGC--AA---A---------------ACA-----TTCTA--G--CAAAACATTTAAAACTC-T----GG--AATAAA-ACTCCGTCGATGACATC-G----T----TTGTATC-C-CG--TA-GAATTCG-AAG---ACTTTACGGTGCCCAGCCTGAgtacattggtggtacctcaaatatgcttgtgcatataatttagcaaaacattctagcaaaacatttaaaactctggaataaaactccgtcgatgacatcgtttgtatcccgtagaattcgaagactttacggtgcccagcctga
gi|11 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtatgcatctttcttacatctcgatttgtcattgaacatgctgccctcttcgacatcacacgcatggagacatttcaaaagagaattagCTCTCTTACACCTTTGATTTGTCATT-GAAACAT---GCC--G----------CCC-CC----------TTTGAATCACCACA-GCAT-GGAAA-TACATGTGTATT--TC---AAAA-------GA----GAATTACA---GTAAAATTGTAAAAT-GCGCAA-CTTG--TTTGA-----AGAATTTGA--TACACTG---TGGTAC-TTC----AAATATG----T----T-TGTGC---ATC-TA----AA---GCAAA-----------GCA-----TCC-A--G--CAAACCAGTTCAAATTT-TG---GG--GGAGGGAACTCCATTGA-GACATCAA----A----TGGTA-C-C-C---TA-GA------------------CAGTGCCCAGGCTGAGA---TGAGA--------AAC--AA---CCCACAAA
gi|12 : taaACACCTC-GATTTATCATT-AAA-CAT---GCC--G----------CTC-C-----------TTCCA--CATCACATGCAT-GGGAA-TA--------TT--TC---AAAA-------AC----GAATTAGA-TG-CAAAA--------------AG-TTTGACTTTGATCGGTCTAATT-GACGTACACTG--GTGTTAC-CTC----AAATATGT---T----T-T-CAC---ATC-TA----AA---GGCAAA----------GCA-----TCCTA--G--CACAATAGCT-AAACTT-CTAGTGA--AAAAAACACTCCGTCGATGACATC-G----T----TTGCATC-T-CCTATA-GAATTCG-AAG---ACTTTC-------------------CTGAGATTG---AGAAC--AA-AACCAATAAAAttgtaa
gi|15 : TGCATCTCAATT-----TC-GATTTGCCATTTAAA-CAA---GTC--G----------CCC-CC----------TTCGA--CATCACACGCATCGGAAA-CA--------TT--CC---CAAA-------GA-GAA------------------TGTAAAATAGC-CA------ACTTTGTTTGGCGGAATT-Gta
gi|16 : aatcacagttgagtattgttcatatcaattttaaattgtagctgttttaagta----AA---G---------------CCA-----TCCTA--T--CAAAACAGTTATAACGT-C----GG--AAAAAAC-TTCC-TCAATGACATT-G----T----TTGTATC-CAC---TA-GAATTCG-AAG---ATTTTCCGGAACCTA-CC-------CTGAGATTG---AGAAC--AA-AGCCAGCAAAACTta
gi|17 : A-----TCCTA--T--CAAA-CAGTTATAACGT-C----GG--AAAAAA-ACTTCCTCAATG-CATT-GT---T----TTGTATC-A-C---TA-GAATTCGAAAG---ATTTTCCGGTACCTAAC--------CTGAGATTG---AGAAC---A-AGCCAACAGAACTgt
gi|19 : TC-GACGTACACTG--GTGCTAC-CTC----AAATA-------------TGCAT---ATC-TA----AA---GGCAAA----------GCA-----TCCTAGGTAGCAAAACAATTAAA--T-------------------CTCTGTCCACAACATC-G----T----TTGTATC-g
gi|20 : atCTCCGTCAATG-CA-C-G----T----TTG-ATC-G-C---TA-AAAT-CG-AAG---CCTTTCCGGTGCCAATCCTGA-------AGATTA---GGAAC--AG-AG
gi|22 : gTTTGTCATT-GAA-CAT---GCT--GC---------CCC-C-----------TTCCA--CAGAGCACGtgttaatcgtaaaactagataaatt
gi|3 : TCTGTTACACCTC-AATTTTTCATT-GAA-CAT---GCT--GCCACCCCCACCCT-C-----------TTTAG--TATCGGAAGCAT-GGACC-T---------TT--TC------A-------AA-ACAGAATTCAA-TGACAAAAATGTAAATT-GC-CA------ACTTTACTCGACGAAATC-GATGCACACTG--CTGGCAC-CTT----AAATGTGC--------T-TGCAC---ATG-AA----AT---G---------------GCAAAACGTCCTA--G--GGGAAAAGTTAAAAC-T-C----AA--AGGAAA-ACTCCCTCAATGACATC-G----T----TTGTATCAA-C---TA-GTCTTTG-AAG---ACTTTCCAGTGCCCAGCTTGAGA--
gi|5 : aatcactcttgattactgttgaaattattatgaactgtactttgtattatgtattaTCTGTTACAACCG-AATCTGTCATT-GAA-CAT---GCT--GAG--------TCC-C-----------TTGGG--TATCGCAAGCAT-GGAAGCTA--------TT--CG---AAAA-------AC-AAA----TAAA-TGACAAAATTGTAAAAT-GC-CA------ACTTTACTCGACGAAATT-GATGCACACTG--CTGGCACGTTT----AAA---G--------------AC---A----A----AA--------------------CG-----TCCTA--T--GGAAAGAGTTAAAACTT-C----AG--GAAAAAAAC-CCATCAATAACATC-GT---T----TTGTATC-C-T---CATGAATTTG-GCG---AATTCTCGTTGCCCAGCCTGATA--ATG---TCGACAAAAAC--AATAGCAAATAAtcataaacaagccatatcaattaattatgatagtgagaggctatcttccctgcaagtttccagctttttccgttttctcagctactcatgttgtaagccgtaatttgaacataaacatatcgttactatgtggtattatcttttttctgcaagatatgaaacgtgaaagattta
gi|7 : cacttttgagtattgttgaaattattgtgaactgtgaattactTGCATCTCTGTTATATCTC-GATTTATCATT-AAA-CAT---GCC--G----------CCC-C-----------TTTGA--CATCACGTGCAT-GGAAA-TG--------TT--TT------A-------AA-GAAGAATTAGA-TG-CAAACTTGTAAACT-GC-CAATTTTGACTTTGATCGACGAGATT-GACGTACACTG--GTGGTAC-TCC----AAATATG----T----T-TGCAC---ATC-TA----AA---GGCAACTAAAAGCAAAGCA-----TTCTA--T--CAAAATAGTTCAAACTT-C----GG--TAAAAACACTCCGTCGATGACATC-C----T----TTGAATC-C-C---TA-G---TAG-AAGAATATTCTCTGATGCCCAAC--------CTGAGATTG---GAAAC--AA-AGCCAACAAAACTttatgatagggaattactttcatcgctgcacgtttcaggttctcgttttctcaaaactattacatttaacgttgtaattaaaca
gi|8 : cTGTATCTCTGTTACACCTC-AATTTATCATT-GAA-CAT---GCT--G----------CCC-C-----------TTTGA--CATCATACGCAG-GGAAA-TA--------TTAAT----AAAA-------AA-AAAGAAGTAGA-TG-CAAAATTGTAAAGT-AC-CAAGTTTGACTTTGATCAGTGGAATT-GACGTACACTG--GTGGTAC-CTC----AAATATATATAT----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAATAGTTGAAACTT-C----GG--AGAAAACACCCTGTCAATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ATTTTCTGATGCCCAACCTGAGATTCTGAGATTG---AAAAT--AA-AGCCAACAAAACTga
gi|9 : ATTTCTGTTACACCTA-GATTTATCATT-GAA-CAT---GTCTGA----------CCC-C-----------TTCGA--CATTACATACAT-GGAAA-TA--------TT--TTTAAAAAA-------AG-AAAGAATTAGA-TG-CAAAATTGTAAAAT-GC-CAAGTTTGACTTTGTTAGGCAGAATC-TACGTACAGTGGAGTGGTAC-CTC----AAATATG----T----T-TGCAC---ATCTTATTGCAATTTA---------------GCA-----TCCTA--G--CAAAATTGTTCAAACTT------GGAAAAAAAACACTCCATCAAT----------------------CC-C-C---TA-GAATTTG-AAG---ACTGTCTGGTGCCCAACATGAGA--T-----TCG---AGAACTGAA-AGCCAACAAA
blockSeqs : T T A . TG CCACCCCCAC T C AT C C C CATGTGTA AA TTAAAAAA A G T A T A G ATTTTG A G TT GAG G . TATAT G ATA T TTGC GGCAACTAAAAGCAAA AAACG GGTAG A CTAGT AAA A A A TAAAC A T CTA T A AAT ACCTGAGATTC ACAA TG T
blockSeqs : . . . . . AG . C . T . . . . CAAAA G G . G A . . AGTTTG A G T G . . CT . . . GC GGCAAA . G C TG A C G . TT . A G . . . GCCTGATAA T . .
blockSeqs : . . . . . C . . . C . . . . CAAAA A G . A T . . AGTTTG T A T G . . TT . . . . GGCAAA . G A T G C G . TT . . . . . . ACATGAGAT A . .
blockSeqs : . . . . . . . . . C . . . . CCAAA A G . A T . . ACTTG C A T G . . T . . . . GCAAA . G A C A A G . T . . . . . . GGCTGAGA A . .
blockSeqs : . . . . . . . . . A . . . . GAAAA G G . . T . . GTTTG C A C C . . C . . . . TTTA . T A C A C A . A . . . . . . GGAGCC A . .
blockSeqs : . . . . . . . . . A . . . . AAAA A G . . T . . . A G C C . . T . . . . A . T A C A C A . T . . . . . . TCCTGA G . .
blockSeqs : . . . . . . . . . T . . . . CA A G . . . . . . A G T G . . T . . . . G . G A C A C C . T . . . . . . CCC G . .
blockSeqs : . . . . . . . . . C . . . . CA . . . . . . . . T . T G . . . . . . . G . T C C G . A . T . . . . . . ACC A . .
blockSeqs : . . . . . . . . . T . . . . TA . . . . T . . . . . . . . G . T G C T . A . T . . . . . . ACC A . .
blockSeqs : . . . . . . . . . C . . . T C . A . A . T . . . . . . C . .
blockSeqs : . G . . . . G . T . . . . . .
blockSeqs : A . T . . . . . .
blockSeqs : A . . .
blockSeqCons : *** *********** CAAAA********** A* ATTTG* T* **** T******** GCA**************** C***** A** T******** GCCTGAC****
originalCons : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTTGACTTTGNTCGGCGGAATC-GACGTACACTG--GTGGTAC-CTC----AAATATGC---T----T-TGCAC---ATC-TA----AA---G---------------GCA-----TCCTA--T--CAAAACAGTTAAAACTT-C----GG--AAAAAACACTCCGTCGATGACATC-G----T----TTGTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGAGA--CTGAGATTG---AGAAC--AA-AGCCAACAAAACT
finalCons : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G----------CCC-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TCAAAA----------AAA-AAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAATTTG-ACTTTGNTCGGCGGAATT-GACGTACACTG--GTGGTAC-CTC----AAATATGT--------T-TGCAC---ATC-TA----AAGCA----------------GCA-----TCCTA--T--CAAAACAGTTAAAACTTC-----GGA--AAAAACACTCCGTCGATGACATC-GT--------TTGTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGAC----TGAGATTG---AGAAC--AA-AGCCAACAAAACT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTAATTACAGTTAGTACATATAATCTCGATCAATTCCTGACTACTGGTAATATGCCGAACGTCGAGTAATTCCGATTGTCATATACGGTACCAATTACGGTAACTGATGTTTTATTGATTTAAAAGGCCTTCATCTGTTTATCTGGACAAATTAGCGGAAAAGAGAAATCATATAGCGATGAAATATGCCCTAGACTTCATGTCATCGTGTGTGTTATATTTTCTTATCGCAAAAAATGGCATGATCAACTGTAATGTTGTAGTGATGGCGGAGAGTACGATCTCAGGGGATGAGGGGCAGATCTCCACAGACAGATCAGGGGACGAGGACGATGACCCTACAGCTATCTCAGGGGACGAGGAGGAAGACTCCTTAGATAAATTAGGGGGTGAGGAGCAGGTAAGTCACTTCTACGTAAAATATTGTGTAGGTTTCAGGTAGTGTCATGTTCGTGTTCCAACATGCAGGACATATCTAATTATTGTATTTGCGATACTTGAGGAATTTACTGATTATTGTTCGAATA
Unaligned ( gi|4 ): CCCCTCCGCAACTCACTTGTCAAGGGGTTACTATGAAAGGGTCCCTGGTTTGATTCGCGTCCAGATCACATATTACAATTAACAATAAATCCGAGAATTTCGCCACATACAGTTAAGTTACGAAGATGGAAATAGACAATTCCCGATGACTTTTGTTGGACATGTCGAGAAATTTTCCAATCTTAACTTGATTCTTGTTTTATTTAGATGGAAAGTTCGTTAGTTGGGATGTAGATTCTAGATGAATTAACAGAAAAGTAGAATTATACGATGATGAAATAAGTCCTAGGATTAACGTCATCGCGTGTGTTTAATTTTTCCAGACAATGACGTGATCACTGTAATGGTCTAGTAATGGCGGAGAGTAAGGTATCCACCGGCAGCTCCGGTGACGAGGAGGAAGATTTCACCGACACCTCCGGTGACGAGGAGGGAGATTCCACAGATAGCTCAGGTGA
Unaligned ( gi|6 ): AGAAAAGGTATTAATGTATAGATGAATGAAATACAGTCCGTAATGATTAACGTCATTATCGCATGTGTTTGTTATTTTTCAGCAATGACGGGTGATCACTGAGTAATGGTCCTAGTAAGTGCGATAGCAAAATCTCCACCGACAGCCGGTGACGGGAGGCGGGTAGTCACTTTACGTAAACTAGTGTGTAAATTCATGTAGGTTGTGTAGTGGAGTTGCTTCAGCATGAATAAGTCTTTGCGATTATGTGAGTTCACCTTGTATTATGTTGAGATGGCATAAATGGAATAGATCACTATTGAGTATTATTAGTACTGTTATAATTGGTGGCTGTTAATTTGTAAACTGTTTCTATATGTATTCTCTAGATCTCC
Unaligned ( gi|13 ): AAGGGGTCCCTGGTTTGATTCCCGGGCCAGTCACAATTTACATACATAAATATCGAGATTTTCCCAAATACAGTTAGTACAGAAGATATAGACAATTCCCCGACGACTTGTTGTTCAGAAAATATCGAGAAATTTTCAATCATAATTGATTTTGTTTATTTAGATGGAGTTCGATAGTTTATCTAGATGAATTAGCAGAAAAGTAGAATTATATGATGATGAAATAAGTCCTATGATTAACGTCATCG
Unaligned ( gi|14 ): AAGAAAAGTGGAATCATAGATGATGAAATGTGTCCTAGGATTAACGTCATTGTGTTTCAAATCTTCAGACAATGACGTGATCACTGTAACAAACAAGTAATGGCGGAGAGCAAGATCTCCGACGACAGCTCCGGTGACGAGGAGGACGATTCCACAGATAGCCCTGGTGATGAGGGGCGG
Unaligned ( gi|18 ): GGCAAAGTATATTCTAGATTTAACATTATCGCATATGCATTTTTATGACGTGGTCACGTTTTTTGTTCAAATGGCGGAGAGCAAGATCTCTGCACATAGTTCAGGAGACAAGGA
Unaligned ( gi|21 ): ATTGTTTGAACTGCAGTGCTTATTGAATCATACATCAAAATGCAATATT
Alignments
lowQualScore : 222222222222222222222222 11111111 1111 22222222222222 1 3333333 1111111111 111111 66666666666666666666 11111 1111 1 111111111 44444444444
lowQualScore : 4 3 3 666 55 88 555555555555555555555555 55 0 5 4 4 44444444 55 0000 77777777777777 4 4 2 0 4 4 2222222 1 1 3 0 888 8888 6666666666 44 111111 666 00000000000000000000 00000 0 2 3 0000 666 0 0 2 2 000000000 2 2 9 888 3 0 3 555 77777777777 3 777777 44 3
lowQualScore : . . . ... .. .. ........................ .. . . . . ........ .. .... .............. . . . . . . ....... . . . . ... .... .......... .. ...... ... .................... ..... . . . .... ... . . . . ......... . . . ... . . . ... ........... . ...... .. .
lowQualScore : 0 6 6 444 00 66 555555555555555555555555 00 2 7 0 0 55555555 55 2222 11111111111111 0 5 0 9 4 4 9999999 0 9 6 7 000 5555 2222222222 77 555555 444 22222222222222222222 22222 8 3 3 4444 333 1 6 1 9 666666666 9 9 2 555 1 5 1 444 11111111111 3 222222 66 6
consensus : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G--CC----------C-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTT-GACTTTGNTCGGCGGAATT-GACGTACACTG--GTGGTACCTC----AAATA---TGT----TTGCACATC-T------AA---A--G-----------CAAA--GCATCCTA--T--CAAAACAGTTAAAAC-TTC----GG--AAAAAACACTCCGTCGATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCC-GA----CTGAGATT-G---AG-AAC--AA-AGCCAACAAAACT
Reference ( family-2480 ) : TGCATCTCTGTTACACCTC-GATTTGTCATT-GAA-CAT---GCC--G--CC----------C-C-----------TTCGA--CATCGCACGCAT-GGAAA-TA--------TT--TC---AAAA-------AA-AAAGAATTAGA-TGACAAAATTGTAAAAT-GC-CAA-TTT-GACTTTGNTCGGCGGAATT-GACGTACACTG--GTGGTACCTC----AAATA---TGT----TTGCACATC-T------AA---A--G-----------C--A--GCATCCTA--T--CAAAACAGTTAAAAC-TTC----GG--AAAAAACACTCCGTCGATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCG-AAG---ACTTTCCGGTGCCCAGCCTGA----CTGAGATT-G---AG-AAC--AA-AGCCAACAAAACT
gi|1 : TTACACATC-AATTTGCTATT-GTA-CATATTGCC--C--CC----------C-CCCACCCCCACCTTCAC--TGTCGCAACCAT-GGAAA-TA--------TT--TA---AAAATTTCAACAACAAAAAACTAAG-TGACTGAATTGTAAAAT-GC-CA-------ACTTTGCTTGA-AAAATT---------CC----TTGCATCTCCGAGAAACACTCCGTCG--TTG-ACATTGT------AA---A--C-----------T--T--GTATCCTC--T---AGAAT-GTGAAGACTTTC----GG--------TGCCTAGTCAATGACATT-GGAAAC----TT-GTATC-CTC---TA-TAATATG-AAG---AC-TTCCGGTACTCAGTC--A----GTGATATT-G---TA-AAC--
gi|1 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcACTCAGTCAGTGATATT-G----TAAACTT-GTATC-CTC---TA-GAATGTG-AAG---ATTTCCCTGTGCGGAGC--------CTGAAATT-G---TA-AAC--AA-A--CAACAttgtatcctctagaatgtgaagatttccctgtgcggagcctgaaattgtaaacaaacaacagctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : tgatgaaatatgtcctaggattaacgtcatcgcgtgtttcaattattttcagacaatgtcgtaatcaaagtaatgttgtaataatggcggagagtaagatcccaaccaagagctccagtgatgcagaggaatattccatagagaacccaggtgatgagggacaggtacgtcattattacgtaaactagtatgcaggttccaggtatatttgtgttatctaattattgtatttgtggcactcgatgagtgtgttaattattgtttgtactcaagtgtttattgttgcctaaatgaaaataaaatcacttttgagtactgcacggttataattattgtgaaatataaacattatttatcatgcattctttagatatcttacacatcaatttgctattgtacatattgcccccccccacccccaccttcactgtcgcaaccatggaaatatttaaaaatttcaacaacaaaaaactaagtgactgaattgtaaaatgccaactttgcttgaaaaattccttgcatctccgagaaacactccgtcgttgacattgtaaacttgtatcctctagaatgtgaagactttcggtgcctagtcaatgacattggaaacttgtatcctctataatatgaagacttccggtTGCATCTTTCTTACATCTC-GATTTGTCATT-GAA-CAT---GCT--G--CC----------CTC-----------TTCGA--CATCACACGCAT-GGAGA-CA--------TT--TC------A-------AA-AGAGAATTAGATTGACgctaataactatgacagtgaacgactttcttccctgaacgtttcaggtccttcgttttctcaaacctattgcatagttgaccttaaacataaaaatatgtgttgcattgtctgttttgcacacaaagataaattgaagtatttaattacgtcacaaaatgtatgtt
gi|10 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtaATT-GACGTACATTG--GTGGTACCTC----AAATA---TGC----TTGTGCATA-T------AATTTA--G-----------CAAA--ACATTCTA--G--CAAAACATTTAAAAC-TCT----GG--AATAAA-ACTCCGTCGATGACATC-G----T----TT-GTATC-C-CG--TA-GAATTCG-AAG---ACTTTACGGTGCCCAGCCTGA----gtacattggtggtacctcaaatatgcttgtgcatataatttagcaaaacattctagcaaaacatttaaaactctggaataaaactccgtcgatgacatcgtttgtatcccgtagaattcgaagactttacggtgcccagcctga
gi|11 : aatcaccgttgagtactgtcatatttattgtgaactgtaagctgttttcagtggaccgttttcagtatgcatctttcttacatctcgatttgtcattgaacatgctgccctcttcgacatcacacgcatggagacatttcaaaagagaattagCTCTCTTACACCTTTGATTTGTCATT-GAAACAT---GCC--G--CC----------C-CC----------TTTGAATCACCACA-GCAT-GGAAA-TACATGTGTATT--TC---AAAA-------GA----GAATTACA---GTAAAATTGTAAAAT-GCGCAA-CTT-G--TTTGA-----AGAATTTGA--TACACTG---TGGTACTTC----AAATA---TGT----TTGTGCATC-T------AA---A--G-----------CAAA--GCATCC-A--G--CAAACCAGTTCAAAT-TTTG---GG--GGAGGGAACTCCATTGA-GACATCAA----A----TG-GTA-C-C-C---TA-GA------------------CAGTGCCCA----GG----CTGAGA-T-G---AGAAAC--AA---CCCACAAA
gi|12 : taaACACCTC-GATTTATCATT-AAA-CAT---GCC--G--CT----------C-C-----------TTCCA--CATCACATGCAT-GGGAA-TA--------TT--TC---AAAA-------AC----GAATTAGA-TG-CAAAA--------------AG-TTT-GACTTTGATCGGTCTAATT-GACGTACACTG--GTGTTACCTC----AAATA---TGT----TTTCACATC-T------AA---AG-G-----------CAAA--GCATCCTA--G--CACAATAGCT-AAAC-TTCTAGTGA--AAAAAACACTCCGTCGATGACATC-G----T----TT-GCATC-T-CCTATA-GAATTCG-AAG---ACTTTC-------------------CTGAGATT-G---AG-AAC--AA-AACCAATAAAAttgtaa
gi|15 : TGCATCTCAATT-----TC-GATTTGCCATTTAAA-CAA---GTC--G--CC----------C-CC----------TTCGA--CATCACACGCATCGGAAA-CA--------TT--CC---CAAA-------GA-GAA------------------TGTAAAATAGC-CA-------ACTTTGTTTGGCGGAATT-Gta
gi|16 : aatcacagttgagtattgttcatatcaattttaaattgtagctgttttaagtaA---A--G-----------C------CATCCTA--T--CAAAACAGTTATAAC-GTC----GG--AAAAAAC-TTCC-TCAATGACATT-G----T----TT-GTATC-CAC---TA-GAATTCG-AAG---ATTTTCCGGAACCTA-CC-------CTGAGATT-G---AG-AAC--AA-AGCCAGCAAAACTta
gi|17 : ATCCTA--T--CAAA-CAGTTATAAC-GTC----GG--AAAAAA-ACTTCCTCAATG-CATT-G----T----TTTGTATC-A-C---TA-GAATTCGAAAG---ATTTTCCGGTACCTAAC--------CTGAGATT-G---AG-AAC---A-AGCCAACAGAACTgt
gi|19 : TC-GACGTACACTG--GTGCTACCTC----AAATA-----------TGCATATC-T------AA---AG-G-----------CAAA--GCATCCTAGGTAGCAAAACAATTAAA---T------------------CTCTGTCCACAACATC-G----T----TT-GTATC-g
gi|20 : atCTCCGTCAATG-CA-C-G----T----TT-G-ATC-G-C---TA-AAAT-CG-AAG---CCTTTCCGGTGCCAATCCTGA-------AGATT-A---GG-AAC--AG-AG
gi|22 : gTTTGTCATT-GAA-CAT---GCT--GC-CC----------C-C-----------TTCCA--CAGAGCACGtgttaatcgtaaaactagataaatt
gi|3 : TCTGTTACACCTC-AATTTTTCATT-GAA-CAT---GCT--G--CCACCCCCACCCT-C-----------TTTAG--TATCGGAAGCAT-GGACC-T---------TT--TC---AAAA-------CA----GAATTCAA-TGACAAAAATGTAAATT-GC-CAA-------CTTTACTCGACGAAATC-GATGCACACTG--CTGGCACCTT----AAATG---TGC----TTGCACAT--G------AA---ATGG-----------CAAA--ACGTCCTA--G--GGGAAAAGTTAAAAC--TC----AA--AGGAAA-ACTCCCTCAATGACATC-G----T----TT-GTATCAA-C---TA-GTCTTTG-AAG---ACTTTCCAGTGCCCAGC--------TTGAGATC-A---TA-AAC---A-AGCCA
gi|5 : aatcactcttgattactgttgaaattattatgaactgtactttgtattatgtattaTCTGTTACAACCG-AATCTGTCATT-GAA-CAT---GCT--GAGTC----------C-C-----------TTGGG--TATCGCAAGCAT-GGAAGCTA--------TT--CG---AAAA-------AC-AAA----TAAA-TGACAAAATTGTAAAAT-GC-CA-------ACTTTACTCGACGAAATT-GATGCACACTG--CTG----------------------------GCACGTT-T------AA---A--GA----------CAAA--ACGTCCTA--T--GGAAAGAGTTAAAAC-TTC----AG--GAAAAAAAC-CCATCAATAACATC-GT---T----TT-GTATC-C-T---CATGAATTTG-GCG---AATTCTCGTTGCCCAGCCTGA-----TAATGTC-GACAAA-AAC--AATAGCAAATAAtatcaattaattatgatagtgagaggctatcttccctgcaagtttccagctttttccgttttctcagctactcatgttgtaagccgtaatttgaacataaacatatcgttactatgtggtattatcttttttctgcaagatatgaaacgtgaaagattta
gi|7 : cacttttgagtattgttgaaattattgtgaactgtgaattactTGCATCTCTGTTATATCTC-GATTTATCATT-AAA-CAT---GCC--G--CC----------C-C-----------TTTGA--CATCACGTGCAT-GGAAA-TG--------TT--TT---AAAG-------AA----GAATTAGA-TG-CAAACTTGTAAACT-GC-CAA-TTTTGACTTTGATCGACGAGATT-GACGTACACTG--GTGGTACTCC----AAATA---TGT----TTGCACATC-T------AA---A--GGCAACTAAAAGC--AAAGCATTCTA--T--CAAAATAGTTCAAAC-TTC----GG--TAAAAACACTCCGTCGATGACATC-C----T----TT-GAATC-C-C---TA-G---TAG-AAGAATATTCTCTGATGCCCAAC--------CTGAGATT-G---GA-AAC--AA-AGCCAACAAAACTttatgatagggaattactttcatcgctgcacgtttcaggttctcgttttctcaaaactattacatttaacgttgtaattaaaca
gi|8 : cTGTATCTCTGTTACACCTC-AATTTATCATT-GAA-CAT---GCT--G--CC----------C-C-----------TTTGA--CATCATACGCAG-GGAAA-TA--------TTAAT----AAAA-------AA-AAAGAAGTAGA-TG-CAAAATTGTAAAGT-AC-CAAGTTT-GACTTTGATCAGTGGAATT-GACGTACACTG--GTGGTACCTC----AAATA---TATATATTTGCACATC-T------AA---A--G-----------------GCATCCTA--T--CAAAATAGTTGAAAC-TTC----GG--AGAAAACACCCTGTCAATGACATC-G----T----TT-GTATC-C-C---TA-GAATTCG-AAG---ATTTTCTGATGCCCAACCTGAGATTCTGAGATT-G---AA-AAT--AA-AGCCAACAAAACTga
gi|9 : ATTTCTGTTACACCTA-GATTTATCATT-GAA-CAT---GTCTGA--CC----------C-C-----------TTCGA--CATTACATACAT-GGAAA-TA--------TT--TTTAAAAAA-------AG-AAAGAATTAGA-TG-CAAAATTGTAAAAT-GC-CAAGTTT-GACTTTGTTAGGCAGAATC-TACGTACAGTGGAGTGGTACCTC----AAATA---TGT----TTGCACATC-TTATTGCAA---T--T-----------T--A--GCATCCTA--G--CAAAATTGTTCAAAC-TT-----GGAAAAAAAACACTCCATCAAT-----------------------CC-C-C---TA-GAATTTG-AAG---ACTGTCTGGTGCCCAAC---A-----TGAGATTCG---AG-AACTGAA-AGCCAACAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CTAATTACAGTTAGTACATATAATCTCGATCAATTCCTGACTACTGGTAATATGCCGAACGTCGAGTAATTCCGATTGTCATATACGGTACCAATTACGGTAACTGATGTTTTATTGATTTAAAAGGCCTTCATCTGTTTATCTGGACAAATTAGCGGAAAAGAGAAATCATATAGCGATGAAATATGCCCTAGACTTCATGTCATCGTGTGTGTTATATTTTCTTATCGCAAAAAATGGCATGATCAACTGTAATGTTGTAGTGATGGCGGAGAGTACGATCTCAGGGGATGAGGGGCAGATCTCCACAGACAGATCAGGGGACGAGGACGATGACCCTACAGCTATCTCAGGGGACGAGGAGGAAGACTCCTTAGATAAATTAGGGGGTGAGGAGCAGGTAAGTCACTTCTACGTAAAATATTGTGTAGGTTTCAGGTAGTGTCATGTTCGTGTTCCAACATGCAGGACATATCTAATTATTGTATTTGCGATACTTGAGGAATTTACTGATTATTGTTCGAATA
Unaligned ( gi|4 ): CCCCTCCGCAACTCACTTGTCAAGGGGTTACTATGAAAGGGTCCCTGGTTTGATTCGCGTCCAGATCACATATTACAATTAACAATAAATCCGAGAATTTCGCCACATACAGTTAAGTTACGAAGATGGAAATAGACAATTCCCGATGACTTTTGTTGGACATGTCGAGAAATTTTCCAATCTTAACTTGATTCTTGTTTTATTTAGATGGAAAGTTCGTTAGTTGGGATGTAGATTCTAGATGAATTAACAGAAAAGTAGAATTATACGATGATGAAATAAGTCCTAGGATTAACGTCATCGCGTGTGTTTAATTTTTCCAGACAATGACGTGATCACTGTAATGGTCTAGTAATGGCGGAGAGTAAGGTATCCACCGGCAGCTCCGGTGACGAGGAGGAAGATTTCACCGACACCTCCGGTGACGAGGAGGGAGATTCCACAGATAGCTCAGGTGA
Unaligned ( gi|6 ): AGAAAAGGTATTAATGTATAGATGAATGAAATACAGTCCGTAATGATTAACGTCATTATCGCATGTGTTTGTTATTTTTCAGCAATGACGGGTGATCACTGAGTAATGGTCCTAGTAAGTGCGATAGCAAAATCTCCACCGACAGCCGGTGACGGGAGGCGGGTAGTCACTTTACGTAAACTAGTGTGTAAATTCATGTAGGTTGTGTAGTGGAGTTGCTTCAGCATGAATAAGTCTTTGCGATTATGTGAGTTCACCTTGTATTATGTTGAGATGGCATAAATGGAATAGATCACTATTGAGTATTATTAGTACTGTTATAATTGGTGGCTGTTAATTTGTAAACTGTTTCTATATGTATTCTCTAGATCTCC
Unaligned ( gi|13 ): AAGGGGTCCCTGGTTTGATTCCCGGGCCAGTCACAATTTACATACATAAATATCGAGATTTTCCCAAATACAGTTAGTACAGAAGATATAGACAATTCCCCGACGACTTGTTGTTCAGAAAATATCGAGAAATTTTCAATCATAATTGATTTTGTTTATTTAGATGGAGTTCGATAGTTTATCTAGATGAATTAGCAGAAAAGTAGAATTATATGATGATGAAATAAGTCCTATGATTAACGTCATCG
Unaligned ( gi|14 ): AAGAAAAGTGGAATCATAGATGATGAAATGTGTCCTAGGATTAACGTCATTGTGTTTCAAATCTTCAGACAATGACGTGATCACTGTAACAAACAAGTAATGGCGGAGAGCAAGATCTCCGACGACAGCTCCGGTGACGAGGAGGACGATTCCACAGATAGCCCTGGTGATGAGGGGCGG
Unaligned ( gi|18 ): GGCAAAGTATATTCTAGATTTAACATTATCGCATATGCATTTTTATGACGTGGTCACGTTTTTTGTTCAAATGGCGGAGAGCAAGATCTCTGCACATAGTTCAGGAGACAAGGA
Unaligned ( gi|21 ): ATTGTTTGAACTGCAGTGCTTATTGAATCATACATCAAAATGCAATATT