lowQualScore : 22222222222222222222 22222 1111 11 11111111111 22222222222 22222222222 2222 1111111 4444 33 22222222 1111 111 111 222222 3333333 111
lowQualScore : 4 2 99999999999999999999 8 55 99999 1111 4 11 4 55 3 11111111111 3 5555 2 44444444444 22 555555555 22 99999999999 22 555 44 3 1 333 1 88888 5555 77777777777 2 3 1 6 3 1 0000 1111111 777 4 9 0000 777 8 22 777 55555555 99 55 8 5 3 33 777 2 33 2 44 2 3333 22 22 2 22 55 4444 2 4 2 666 22 77 111 222222 88 5 2 8888888 000 2 55
lowQualScore : . . .................... . .. ..... .... . .. . .. . ........... . .... . ........... .. ......... .. ........... .. ... .. . . ... . ..... .... ........... . . . . . . .... ....... ... . . .... ... . .. ... ........ .. .. . . . .. ... . .. . .. . .... .. .. . .. .. .... . . . ... .. .. ... ...... .. . . ....... ... . ..
lowQualScore : 4 1 11111111111111111111 0 55 33333 6666 0 00 0 55 3 22222222222 6 2222 7 66666666666 22 999999999 88 77777777777 66 777 33 6 8 222 8 99999 7777 66666666666 9 3 2 7 3 0 4444 8888888 000 0 4 6666 888 8 88 888 44444444 66 55 0 5 3 22 444 4 22 4 66 2 4444 99 88 1 99 77 2222 0 1 1 222 99 11 666 888888 88 0 5 9999999 333 7 00
consensus : CCTGACG-TCTTTTCAACGTCT--------TTAT-----C--C-TGA--CGTCT-TTTCAG--G-G-CA--A-TAA--ATG-T-A-TA-AT---GT-CACAC---T-AT--N--------ACGTCTTT-ATGA-----C---GT--C-A--CT-----G--ACGTCAGA---A--A-G-A---C-G-----TAAAAA----GA-----A-----C-GTATT-CTT-GT-GACGT--TCTAC-------ACG---AC-GTAGACACCGCTTTCGGA--CATCAA---TAAGAC-GTAA---AAA-C----A-CGTAGT-TTTGC--GACG-TTGA-AAT--G---A-C--G-TAT-G-A----AAA--A--GGAC-G--TCTTTCC-GAC----GT-TCTAA-TTTAGTTATTTGA--CGTC--A---TAACCAG--A---TTNCA-ACCT-NG----AAAAGACGTC---TT-TTTGACGTCT--TATGTCTGCTGG
Reference ( gi|4 ) : CCTGACG-TCTTTTCAACGTCT--------TTAT-----C--C-TGA--CGT-T-TTTCAG--G-G-CA--A-TAA--ATG-T-A-TA-AT---GT-CACAC---T-AT--A--------ACGTCTTT-ATGA-----T---GT--C-A--CT-----G--ACGTCAGA---A--A-G-A---C-G-----TAAAAA----GA-----A-----C-GTATT-CTT-GT-GACGT--TCTAC-------ACG---AC-GTAGACACTGCTTTCGGA--C-TCAA---TACGA--GTAA---AAA-C----A-CGTAGT-TTTGC--GACG-TTAA-AAT--G---A-C--G-TAT-G-A----AAA--A--GGAC-G--TCTTTTT-GAC----GT-TCTAA-TTTAGTTCTTTGA--CGTC--A---TAACCAG--T---TTTCA-ACCTAAG----AAAAGACGTC---TT-TTTGACGTCT--TATGTCTGCTGG
gi|3 : CCTAACA-TCTCTTCAACGTCC--------T-AT-----C--CCTAA--CGTCT-TTTCAG--G-G-CA--A-TAA--ATG-T-A-TA-AT---GT-CACAC---T-AT--T--------ACGCCTTT-ATG-----------T--C-AA-CT-----G--ACATCAGA---A--A-G-A---G-G-----TAAAAA----AA-----AACCAAC-GTATT-CTT-GT-GACGT---CTTC-------ACT---AC-GTAGACACCGCTTTCGTA--CATCAA---TAAGAC-GTAA---AAC-A----A-TGTATT-TTTGT--GATG-TTGA-AAT--G---A-C--G-TAT-G-A----AAA--A--AGAC-G--TCTTTCC-GAC----GT-TCTAA-TTTAGTTATTTGA--TGTC--A---TAACCAG--A---TTTCA-ACATAAA----AAAACCCATC---TT-TTTGACGTCT--TATGTCTGCTGG
gi|1 : aCCTGCCGCTCTTTTCACAGTGC--------TTAT-----C--CCTGA--CGTCT-TTTCAG--G-G-CA--A-TAA--ATG-TCA-TA--T---GT-CACAT---TTAT--T--------GCGTCTTT-ATGA-----T---GT--C-AAACT-----A--AC-TCAGA---AC-A-G-A---C-G-----TGAAAA----GA-----A-----CCGTATT-CTTAGT-GACGT---CTAC-------ACG---AC-GTAGACACCG-TTTCAGA--CATCAA---TAAGAC-GTAA---AAA-CAATAA-C-TAG--TTTGC--GA-G-CTGA-AAT------A-C--G-TAT-G-A----AAA--ATCGGAC-G--TCTTTCC-GAC----GT-TCTAA-GTAAGTTA-TTGA--CTTG--A-------CAGA-T---TCACA-ACCTTA-----AAAAGACGTC---TTGTTTAACGTCT--T-T-TCTGCTGG
gi|8 : CCTGACG-TCT---CAACGTCT--------T-A---------C-TGA--CGTCT-TTTCAG--G-G-CA--A-TAA--ATG-T--------------CACTC---T-AT--T--------ACGTCTTT-ATGA-----T---GT--C-AA-CT-----G--ACGTCAGA---A--AAG-A---C-G-----TAAAAAAGAAGA-----A-----C-GTATT-CTTTGTTGACGT--T-TAC-------ACG---AC-GTAGACACCGCTTTCGGA--CATCAA---TAAGAC-GTTA---AAA-CA---A-CGTAG--TTTGC--AACGTTTGA-AAT--G---ACC--C-TAT-G-A----AAA--A--GAACGG--TCTATCC-GAC----GT-TATAtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|2 : ttaCTGACG-TCTTTCAAAC---C--------TTAT-----C--C-TTGTCCGT-CATTTCAG--G-GGCA--AATAA--ATGCT-A-TA-AT---GT-CACAC---T-TT--G--------AC-TCTTT-ATGA-----T---GTTCC-A--CT-----G--ACGTCAGA---A--A-G-A---C-G-----GAAATA----GA-----A-----T-GTGTTTCTT-GT-GA-----TCTAC-------ACG---ACTGTAGA-ACCTCTTTCGGAA-CATCAA---TACGAC-GTAA---AAA-C----ATCGTAGT-TTTGC--AACG-TTGA-AAT--GGGGA-CCGG-TATAG-A----ACA--A--GGAC-G--TCTTTCT-GAC----GG-TTTAA-TATAGTTCTTTCA--CGTC--AC--TAACCAG------ATTCACACCT-------AAAAGACGTC---TT-TTAGCAATCT--TATATCTGCTGG
gi|10 : taTGACA-TCTTTTCAACGTC---------CTAT-----C--C-CGA--CGTCT-TTTCGG--G-G-CA--A-TAA--ATG-T-A-TG-GT---GT-CACAC---T-AA--T--------ACGTCTTT-ATGA-----T---GT--CAA--CT-----G--ACGACAGA---A--A-G-A---C-G-----TAAAAA----GA-----A-----T-GTATT-CAT-AT-GACA---TCTAT-------ACA---AC-GTAGCCACCGCTTTC
gi|5 : GACG-TCTTTTTAACGTCT--------T
gi|1 : aaaaatgacgtctttccgacgttctaattaagttatttgacgttgacagattccaaccttaaaaa-TCTTTTCA-CGTCTGTTCTGAGTTAG-----T--T-TGA--CAT-C-ATAAAG--ACG-CA--A-TAA--ATG-T-G-------------ACA----T-AT--G--------ACA--TTT-AT-------T---GC--C----CTGAAAAG--ACGTCAGGGATA--A-GCA---CTG-----TGAAAA----GA-----G-----C-Gatgtctgctgggtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|8 : cctgc-TCTTTTTTACGTCT--------T--T-----T--C-TGA--CG------TCAGTTG-A-CATCA-TAA--AGA-C-G-TA-ATAGAGT-GACA------------------------TTT-AT-------T---GC--C----CTGAAAAG--ACGTCAGT---A--A-G-A---C-G-----Taccgtattcttagtgacgtctacacgacgtagacaccgtttcagacatcaataagacgtaaaaacaataactagtttgcgagctgaaatacgtatgaaaaatcggacgtctttccgacgttctaagtaagttattgacttgacagattcacaaccttaaaaagacgtcttgtttaacgtcttttctgctggtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|10 : ttacctgacgtctca-TCTTTTTA-CGTCT--------TT----------C-TGT--CG------TCAGTTG-A-CATCA-TAAAGACG-T-ATTA-GT---GT-GACAC---C-AT-----------ACA--TTT-AT-------T---GC--C-C--CGAAAA-G--ACGTCGGGAT-A--G-G-A---C-GT----TGAAAA----GA-----agaacgtattctttgttgacgtttacacgacgtagacaccgctttcggacatcaataagacgttaaaacaacgtagtttgcaacgtttgaaatgaccctatgaaaaagaacggtctatccgacgttata
gi|19 : tgacaTTCGATGTCT--------TATT-----C--C-TGA--CGTCT-TTTCAG--G-G-CA--A-TAA--ATG-T-A-atgtattcatatgacatctatacaacgtagccaccgctttc
gi|7 : ACGTCT--------TTATGATGTCAAC-TGA--CGT------CAG-------A--A--AA--ACG-T-A-TA-AA---GAACGTAT---T-CTTAA--------ATGTATTC-GTGAACAGAC---AC--C-G--CTTTCA-G--ACATCAAT---A--A-G-A---C-G-----TAAAAA----CA-----A-----C-GT
gi|10 : acactatattTG-T-A-TAGAT---GT-CATATGAAT-AC--ATTCTTTTTACGTCTTT-CTGT-----C---GT--C-AG-TT-----G--ACATCATA---A--A-G-A---C-G-----TAtgaattgatgtatgaaaaaggacgtctttccgacgttctaattttagttatttgacgtcataaccagatcttatgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|6 : tgacatcttttcaacgtcctatcccgacgtcttttcggggcaataaatgtatggtgtcacactaa-T-A-TT-AT---TT-CACAC---T-AT--T--------ACATCTTT-ATGA-----T---GT--C-A--GTC----G--ACGTCAGA---A--A-G-A---C-G-----TATACA----GA-----A-----C-GTATT-TTT-GT-GATGT--T-TACAGACTTAACG---AC-TTAGACATCGCTATCCGA--CATCAA---TAAGAC-GTAA---AAA-CA---A-CGTATT-GTTGC--GATG-TTGA-AAT--T---A-C--G-TAT---A----AAA--A--GGAC-G--TCTTTCC-GAC----GT-TCTAA-TTTAGATATTTGA--CGTC--A---TAACCAC--A---TTTCA-ATCT--T----AAAAGACGTC---AT-TTTGACGTCT--TATTTGTGCTGGacgtagccaccgctttc
gi|7 : ACAC---T-AT--ATT------ACGTCTTT-ATGA-----T---GT--C-AA-CT-----G--ACGTCAGA---A--A-A-A---C-G-----TATAAA----GA-----A-----C-GTATT-CTT-A--AATGT--ATT-C-------GTG---A--ACAGACACCGCTTTCAGA--CATCAA---TAAGAC-GTAA---AAA-C----A----------------ACG-TTGA-ATT--G---A-T--G-TAT-G-A----AAA--A--GGAC-G--TCTTTCC-GAC----GT-TCTAATTTTAGTTATTTGA--CGTC--A---TAACCAG--
gi|6 : C---T-GT--AT-------ACGTCTTT-CTGA-----C---GT--CGA--CT-----G--ACATCATA---A--A-G-A---T-G-----TAAatcttatgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|15 : tattatttcacactaC---T-AT--T--------GCGTCTTT-ATGA-----T---GT--C-AA-CT-----G--ACGTCAGC---A--A-G-A---C-G-----TAAAAA----GA-----A-----C-GTATT-C---GT-AA--------AC------------------AGACACCGCTTTCGGA--CATCAA---TAaacgtatttttgtgatgtttacagacttaacgacttagacatcgctatccgacatcaataagacgtaaaaacaacgtattgttgcgatgttgaaattacgtataaaaaggacgtctttccgacgttctaatttagatatttgacgtcataaccacatttcaatcttaaaagacgtcattttgacgtcttatttgtgctgg
gi|7 : ---T-AT--A---------CGTTTTT-CTGA-----C---GT--C-AG-TT-----G--ACATCATA---A--A-G-A---C-G-----TAA
gi|3 : acactata--------ACCTCTTT-CTGA-----T---GT--C-AG-TT-----G--ACAT---A---A--A-G-G---C-G-----TAATAG---------------------------T-GT-GACAT--TATAC-------Aaagaacgtattcttaaatgtattcgtgaacagacaccgctttcagacatcaataagacgtaaaaacaacgttgaattgatgtatgaaaaaggacgtctttccgacgttctaattttagttatttgacgtcataaccagatcttatgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|8 : acctaacatctcttcaacgtcctatccctaacgtcttttcagggcaataaa--------ACGTCTTTTCTGA-----C---GT--C-AG-TT-----G--ACATCATA---A--A-G-A---C-G-----TAAaaaaaaaaaccaacgtattcttgtgacgtcttcactacgtagacaccgctttcgtacatcaataagacgtaaaacaatgtatttttgtgatgttgaaatgacgtatgaaaaaagacgtctttccgacgttctaatttagttatttgatgtcataaccagatttcaacataaaaaaacccatctttttgacgtcttatgtctgctgg
gi|11 : ttacctgacgtctcaacgtcttactgacgtcttttcagggcaataaatgtcactcta--------ACGTCTCT-A--A-----TTTAGT--T-A--TT-----G--ACGTCATA---ACCA-G-ATTTC-AACCTTTAAAAA----G------A-----C-GTCTT-TTT-TT-GACGT--CTTAaaaaaagaagaacgtattctttgttgacgtttacacgacgtagacaccgctttcggacatcaataagacgttaaaacaacgtagtttgcaacgtttgaaatgaccctatgaaaaagaacggtctatccgacgttata
gi|15 : gacgtaacataaaacgtagttttgcgacgtgtgcgatatggaaaaaggacgtctcttccg--------ACGTCTTG-CTGA-----C---GT--C-AG-TT-----G--ACATCATA---A--A-G-A---C-G-----CAAtgtctgctgg
gi|2 : ctaCGTCTTT-CTGA-----C---GT--C-A--GT-----GGAACATCATA---A--A-G-A-----G-----TCAAAaaaaagaacgtattcgtaaacagacaccgctttcggacatcaata
gi|12 : tactgacgtctttcaaaccttatccttgtccgtcatttcaggggcaaataaatgctataatgtcacac-A--CT-----G--GAGTCAGA---A--AAG-A---C-GGG---TAAAAG----GAGAGAGA-----C-ATA-------AT-GGCGTAAGC-AA-------ACGGGGAC-GTAGACAC-GCTTTCGGAAACATCAAAAATACG----TAA---AAAAC----AACGTAGGGTTTGC--GACG-TTGACAAT--GGG-A-C--G-TAT-G-A----AAA--A--gaaatagaatgtgtttcttgtgatctacacgactgtagaacctctttcggaacatcaatacgacgtaaaaacatcgtagttttgcaacgttgaaatggggaccggtatagaacaaggacgtctttctgacggtttaatatagttctttcacgtcactaaccagattcacacctaaaagacgtcttttagcaatcttatatctgctgg
gi|9 : GA---A--A-G-A---C-G-----TAAAAA----GA-----A-----C-GTATT-CTT-GT-GACGT---CTAC-------ATG---AC-GTAGACACCGCATTTGGA--CATCAA---TAAGACCGTAC---AAA-C----AACGTAGT-TTTGC--GACG-TTGA-AAT--G---A-C--C-TAT-G-A----AAA--A--GGAT-G--TCTTTCC-TAC----GT-TCTAA-TTTAGTTATTTGA--CGGC--A---TAa
gi|11 : --GTAACATAAA------A-CGTAGT-TTTGC--GACG-T-----GT--G-----C--GATAT-GGA----AAA--A--GGAC-G--TCTCTTCCGAC----GTCTCTAA-TTTAGTTATT-GA--CGTC--A---TAACCAG--A---TTTCA-ACCTTTA----AAAAGACGTCTT-TT-TTTGACGTCT--TATGTCTGCTGGg
gi|13 : gacGT-TGTGCTGAACGCTTGA-AAT--G---A----G-TAT-G-A----AATTTA--GGTA-G--TCTTTCC-GAT----GT-T-TAA-TTTAGTTATTCGACGCGTC--AAATTAAACAGGAT---TTGCA-ACCT
gi|1 : AA-AA---G---A-C--G-T-T-A-A----ACA--A--G-AC-G--TCTTTTT-AAG----GT-TGTGA----A--TCTGTCA--AGTCA-A---TAACTTA--C---TTAGA-ACGT-CG----GAAAGACGTCCGATT-TTTtgtgtctgctgg
gi|6 : cctgccgctcttttcacagtgcttatccctgacgtcttttcagggcaataaatgtcatatgtcacatttattgcgtctttatgatgtcaaactaactcagaacagacgtgaaaagaaccgtattcttagtgacgtctacacgacgtagacaccgtttcagacatcaataagacgtaaaaacaataactagtttgcgagctgaaatacgtatgA-AATAAG---A-C--G-TC---------AAA--A--TGAC-G--TCTTTT--AAG----AT-TGAAA-TGTGGTTAT--GA--CGTC--AAA-TATCTAA--A---TTAGA-ACGTCGG----AAA-GACGTC---CT-TTTctgctggtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|3 : tattatttcacactattacatctttatgatgtcagtcgacgtcagaaagacgtatacagaacgtatttttgtgatgtttacagacttaacgacttagacatcgctatccgacatcaataagacgtaaaaacaacgtattgttgcgatgttgaaattacgtata--G---A-C--A-TAA-G-ACGTCAAA--A--AGAT-GGGTTTTTTT--AT----GT-TGAAA-TCTGGTTAT--GA--CATC--AAA-TAACTAA--A---TTAGA-ACGTCGG----AAA-GACGTC---TT-TTT----TCA--TACGTCgtgctgg
gi|11 : acctaacatctcttcaacgtcctatccctaacgtcttttcagggcaataaatgtataatgtcacactattacgcctttatgtcaactgacatcagaaagaggtaaaaaaaaaccaacgtattcttgtgacgtcttcactacgtagacaccgctttcgtacatcaataagacgtaaaacaatgtatttttgtgatgttgaaat--G---A-C--G-T-C-A-A----AAA--A--AGAC-G--TCTTTTTAAAG----GT-TGAAA-TCTGGTTA--TGA--CGTCA-A---TAACTAA--A---TTAGAGACGTCGG----AAGAGACGTC---CT-TTTtgctgg
gi|14 : gacgtaacataaaacgtagttttgcgacgtgtgcgatatgga--G---A-C--G-TA---------AAA--A--AGAC-G--TCTTTTT-AACCTTGGT-TGAAA-TCTGGTTA--TGA--CGTC--A----AATAAG--TAAATTAGA-ACGT-TG----GAAAGACGTC---ttatgtctgctgg
gi|5 : g--G---A-C--A-TAA-G-ACGTTAAA--A--AGAC-G--TCTTTTT-AAG----GT-TGGAA-TCTG-----TCAA--CGTCAAA---TAACTTA--A---TTAGA-ACGT-CG----GAAAGACGTCA--TT-TTTttatatgtctgctg
gi|16 : --G---A-C--A-TAA-G-ACCTCAAA--A--AGAC-G--TCTTTTT-AAG----GT-TGAAA-TCTGGTTA--TGA--CGTC--A---tgctgggtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|5 : gttctaatttaattatt-A----AAA--A--TGAC-G--TCTTTCC-GAC----GT-TCTAA-TTAAGTTATTTGA--CGT-------TGAC-AG--A---TTCCA-ACCTTA-----AAAAGACGTC---TT-TTTAACGTCT--TATGTCTGCTGGtgttg
gi|16 : ----AAA--A--AGAC-G--TCTTTTT-GAG----GT-CTTAgtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|14 : gttctaatttaattatttgacgtcataaccagatttcaacctt--GGAC-G--TCTTTCC-AAC----GT-TCTAA-TTTACTTATTTGA--CGTC--A---TAACCAG--A---TTTCA-ACC-AAGGTTAAAAAGACGTC---TT-TTTTACGTCTTATATGTCTGCTGtgtctgttg
gi|16 : ----GT-TCTAA-TTTAATTATTTGA--CGTC--A---TAACCAG--A---TTTCA-ACCTTA-----AAAAGACGTC---TT-TTTGAGGTCT--TATGTCTGTTG
gi|17 : TAA-TTTAGTTATTTGA--CGTC--A---TAACCAG--A---TT---------------------------------TGACGTCT--TATGTCTGCTGG
gi|20 : taCGTC---TT-TTTGACGTCT--TATGTCTGCTGG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTCATGATTGAGAAGCCTTCACATACTACCAAAAAAAATCAGAA
Alignments
lowQualScore : 1 1 1111 11111111111 11111 1111111 111 2222 22222222
lowQualScore : 6 1 5 1 77 5 5 5 5 7 4 777 7 66 6666 4 3 7 55 7777 22222222222 3 7 3 2 88888 1111111 666 3 99 4 111 0000 8 444 55 7 3 88888888888 3 3 3 44 44 3 3 3 3 44 888 44 55 11111111 4 55 3 55
lowQualScore : . . . . .. . . . . . . ... . .. .... . . . .. .... ........... . . . . ..... ....... ... . .. . ... .... . ... .. . . ........... . . . .. .. . . . . .. ... .. .. ........ . .. . ..
lowQualScore : 7 7 7 4 99 7 7 0 0 3 4 111 0 11 5555 0 6 3 00 7777 88888888888 6 3 6 0 77777 8888888 444 6 55 0 000 5555 0 777 00 3 6 33333333333 6 6 3 66 22 3 3 1 1 22 555 66 99 88888888 0 00 6 00
consensus : CCTGACG-TCTTTTCAACGTCCTTATCC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTATT--ACGTCTTTATGATGT--C--AACT-GACGTCAGAA-A-GACG--TAAAAA----GA-----A-----CGTATT-CTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGGA--CATCAATAAGAC-GTAA---AAACA---A-CGTA-GTTTTGC--GACG-TTGA-AAT--G---A-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCAGA--TT-TCAACC----T-TAAAAAG-ACGTC--TT-TTTGACGTCT--TATGTCTGCTGG
Reference ( family-2441 ) : CCTGACG-TCTTTTCAACGTCTTTATCC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTATN--ACGTCTTTATGACGT--C--A-CT-GACGTCAGAA-A-GACG--TAAAAA----GA-----A-----CGTATT-CTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGGA--CATCAATAAGAC-GTAA---AAAC----A-CGTA-GTTTTGC--GACG-TTGA-AAT--G---A-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCAGA--TT-NCAACC----T-NGAAAAG-ACGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|1 : CCTGCCGCTCTTTTCACAGTGCTTATCCCTGA--CGTCTTTTCAGGG-CAA-TAAATG-TCAT-ATGTCACATTTATT--GCGTCTTTATGATGT--CAAA-CT-AAC-TCAGAACA-GACG--TGAAAA----GA-----AC----CGTATT-CTTAGT-GACG---TCTACA-------CG---AC-GTAGACACCG-TTTCAGA--CATCAATAAGAC-GTAA---AAACAATAA-C-TA-G-TTTGC--GA-G-CTGA-AAT------A-C--G-TAT-G-AAAA--ATCGGAC-GTCT-TTCCGACGT-TCTAA-GTAAGTTA-TTGA--CTTGA-------CAGA--TTCACAACC----T-TAAAAAG-ACGTC--TTGTTTAACGTCT--T-T-TCTGCTGG
gi|10 : TGACA-TCTTTTCAACGTCCT-ATCC-CGA--CGTCTTTTCGGGG-CAA-TAAATG-T-ATGGTGTCACA-CTAAT--ACGTCTTTATGATGT--CA-A-CT-GACGACAGAA-A-GACG--TAAAAA----GA-----A-----TGTATT-CAT-AT-GACA---TCTATA-------CA---AC-GTAGCCACCGCTTTCtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|11 : GAC-GTAACATAAA-----A-CGTA-GTTTTGC--GACG-T-----GT--G-----C--GATAT-GGAAAA--A--GGAC-GTCTCTTCCGACGTCTCTAA-TTTAGTTATT-GA--CGTCA---TAACCAGA--TT-TCAACCT---T-TAAAAAG-ACGTCTTTT-TTTGACGTCT--TATGTCTGCTGG
gi|12 : --A-CT-GGAGTCAGAA-AAGACGGGTAAAAG----GAGAGAGA-----CATA-------AT-GGCGTAAGC-AAA-------CGGGGAC-GTAGACAC-GCTTTCGGAAACATCAAAAATAC-GTAAA--AAACA---A-CGTAGGGTTTGC--GACG-TTGACAATGGG---A-C--G-TAT-G-AAAA--A--
gi|13 : -GTTGTGCTGAACGCTTGA-AAT--G---A----G-TAT-G-AAATTTA--GGTA-GTCT-TTCCGATGT-T-TAA-TTTAGTTATTCGACGCGTCAAATTAAACAGGATTT-GCAACC----T-TGa
gi|14 : --GGAC-GTCT-TTCCAACGT-TCTAA-TTTACTTATTTGA--CGTCA---TAACCAGA--TT-TCAACCAAGGT-TAAAAAG-ACGTC--TT-TTTTACGTCTTATATGTCTGCTGtgtctgctgg
gi|15 : -CTATT--GCGTCTTTATGATGT--C--AACT-GACGTCAGCA-A-GACG--TAAAAA----GA-----A-----CGTATT-C---GT-AA--------AC------------------AGACACCGCTTTCGGA--CATCAATA
gi|16 : GT-TCTAA-TTTAATTATTTGA--CGTCA---TAACCAGA--TT-TCAACC----T-TAAAAAG-ACGTC--TT-TTTGAGGTCT--TATGTCTGTTG
gi|17 : TAA-TTTAGTTATTTGA--CGTCA---TAACCAGA-----------------------------------TTTGACGTCT--TATGTCTGCTGG
gi|19 : taTTCGATGTCTTATTCC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-A
gi|2 : CTGACG-TCTTTCAAAC---CTTATCC-TTGTCCGTCATTTCAGGGGCAAATAAATGCT-ATAATGTCACA-CTTTG--AC-TCTTTATGATGTTCC--A-CT-GACGTCAGAA-A-GACG--GAAATA----GA-----A-----TGTGTTTCTT-GT-GA-----TCTACA-------CG---ACTGTAGA-ACCTCTTTCGGAA-CATCAATACGAC-GTAA---AAAC----ATCGTA-GTTTTGC--AACG-TTGA-AAT--GGGGA-CCGG-TATAG-AACA--A--GGAC-GTCT-TTCTGACGG-TTTAA-TATAGTTCTTTCA--CGTCAC--TAACCAGA--TT-CACACC----T---AAAAG-ACGTC--TT-TTAGCAATCT--TATATCTGCTGG
gi|20 : taCGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|3 : aacCCTAACA-TCTCTTCAACGTCCT-ATCCCTAA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTATT--ACGCCTTTATG---T--C--AACT-GACATCAGAA-A-GAGG--TAAAAA----AA-----AACCAACGTATT-CTT-GT-GACGT---CTTCA-------CT---AC-GTAGACACCGCTTTCGTA--CATCAATAAGAC-GTAA---AACA----A-TGTA-TTTTTGT--GATG-TTGA-AAT--G---A-C--G-TAT-G-AAAA--A--AGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--TGTCA---TAACCAGA--TT-TCAACA----T-AAAAAAACCCATC--TT-TTTGACGTCT--TATGTCTGCTGGg
gi|4 : aCCTGACG-TCTTTTCAACGTCTTTATCC-TGA--CGT-TTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTATA--ACGTCTTTATGATGT--C--A-CT-GACGTCAGAA-A-GACG--TAAAAA----GA-----A-----CGTATT-CTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACTGCTTTCGGA--C-TCAATACGA--GTAA---AAAC----A-CGTA-GTTTTGC--GACG-TTAA-AAT--G---A-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTTTGACGT-TCTAA-TTTAGTTCTTTGA--CGTCA---TAACCAGT--TT-TCAACC----TAAGAAAAG-ACGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|5 : -AAAA--A--TGAC-GTCT-TTCCGACGT-TCTAA-TTAAGTTATTTGA--CGT-----TGAC-AGA--TT-CCAACC----T-TAAAAAG-ACGTC--TT-TTTAACGTCT--TATGTCTGCTGG
gi|6 : -T-ATTATTTCACA-CTATT--ACATCTTTATGATGT--C--A-GTCGACGTCAGAA-A-GACG--TATACA----GA-----A-----CGTATT-TTT-GT-GATGT--T-TACAGACTTAACG---AC-TTAGACATCGCTATCCGA--CATCAATAAGAC-GTAA---AAACA---A-CGTA-TTGTTGC--GATG-TTGA-AAT--T---A-C--G-TAT---AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGATATTTGA--CGTCA---TAACCACA--TT-TCAATC----T-T-AAAAG-ACGTC--AT-TTTGACGTCT--TATTTGTGCTGGgtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|7 : ACA-CTATATTACGTCTTTATGATGT--C--AACT-GACGTCAGAA-A-AACG--TATAAA----GA-----A-----CGTATT-CTT-A--AATGT--ATT-CG-------TG---A--ACAGACACCGCTTTCAGA--CATCAATAAGAC-GTAA---AAAC----A----------------ACG-TTGA-ATT--G---A-T--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAATTTTAGTTATTTGA--CGTCA---TAACCAGA--T
gi|8 : CCTGACG-TCT---CAACGTCTT-A--C-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T--------CACT-CTATT--ACGTCTTTATGATGT--C--AACT-GACGTCAGAA-AAGACG--TAAAAAAGAAGA-----A-----CGTATT-CTTTGTTGACGT--T-TACA-------CG---AC-GTAGACACCGCTTTCGGA--CATCAATAAGAC-GTTA---AAACA---A-CGTA-G-TTTGC--AACGTTTGA-AAT--G---ACC--C-TAT-G-AAAA--A--GAACGGTCT-ATCCGACGT-TATActtatgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|9 : ttaGAA-A-GACG--TAAAAA----GA-----A-----CGTATT-CTT-GT-GACGT---CTACA-------TG---AC-GTAGACACCGCATTTGGA--CATCAATAAGACCGTAC---AAAC----AACGTA-GTTTTGC--GACG-TTGA-AAT--G---A-C--C-TAT-G-AAAA--A--GGAT-GTCT-TTCCTACGT-TCTAA-TTTAGTTATTTGA--CGGCA---TA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTCATGATTGAGAAGCCTTCACATACTACCAAAAAAAATCAGAA
Alignments
lowQualScore : 1 11111 1111111 111 11111111
lowQualScore : 6 1 6 5 5 1 77 5 5 5 5 7 4 66 4 4 3 7 55 7777 99999999999 3 3 7 3 2 88888 1111111 666 3 4 55 4 4 4 3 55 444 55 7 3 111 3 55 3 3 3 44 44 3 3 3 3 44 888 3 6 3 33333333 55 55 3 55
lowQualScore : . . . . . . .. . . . . . . .. . . . . .. .... ........... . . . . . ..... ....... ... . . .. . . . . .. ... .. . . ... . .. . . . .. .. . . . . .. ... . . . ........ .. .. . ..
lowQualScore : 7 7 6 0 7 4 99 7 7 0 0 3 4 11 4 4 6 3 00 7777 22222222222 6 6 3 6 0 77777 8888888 444 6 0 55 0 0 0 4 55 777 00 3 6 444 6 00 6 6 3 66 22 3 3 1 1 22 555 3 7 3 77777777 00 00 6 00
consensus : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
Reference ( family-2441 ) : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|1 : CCTGCCGCTCTTTTCACAGTGCTTAT-CCCTGA--CGTCTTTTCAGGG-CAA-TAAATG-TCAT-ATGTCACATTTAT--TGCGTCTTTATGATG-TCAAACTAAC-TCAGAACA-GACG--TGAAAA----G-----A-----ACCGTA-TTCTTAGT-GACG---TCTACA-------CG---AC-GTAGACACCG-TTTCAG-A--CATCAATAAGAC-GTAA-AA-ACAATAACTA-G-TTTGC--GA-G-CTGA-AAT----A-C--G-TAT-G-AAAA--ATCGGAC-GTCT-TTCCGACGT-TCTAA-GTAAGTTA-TTGA--CTTGA-------CA-GATTCACA-ACC----TTA-AAAAGA--CGTC--TTGTTTAACGTCT--T-T-TCTGCTGG
gi|10 : TGACA-TCTTTTCAACGTCCT-AT-CC-CGA--CGTCTTTTCGGGG-CAA-TAAATG-T-ATGGTGTCACA-CTAA--TACGTCTTTATGATG-TC-AACTGACGACAGAA-A-GACG--TAAAAA----G-----A-----A-TGTA-TTCAT-AT-GACA---TCTATA-------CA---AC-GTAGCCACCGCTTTCtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|11 : GAC-GTAA-CATAAAACG--TA-GTTTTGC--GACG-T-----GT---G--C--GATAT-GGAAAA--A--GGAC-GTCTCTTCCGACGTCTCTAA-TTTAGTTATT-GA--CGTCA---TAACCA-GATTT-CA-ACCT---TTA-AAAAGA--CGTCTTTT-TTTGACGTCT--TATGTCTGCTGG
gi|12 : ACTGGAGTCAGAA-AAGACGGGTAAAAG----G-----AGAGAGA-CATA-------AT-GGCGTAAGC-AAA-------CGGGGAC-GTAGACAC-GCTTTCGG-AAACATCAAAAATAC-GTAAAAA-ACAACG--TAGGGTTTGC--GACG-TTGACAATGG-GA-C--G-TAT-G-AAAA--A--
gi|13 : -GTTGTGCTGAACGCTTGA-AAT---GA----G-TAT-G-AAATTTA--GGTA-GTCT-TTCCGATGT-T-TAA-TTTAGTTATTCGACGCGTCAAATTAAACAGGATTTGCA-ACC----TTa
gi|14 : --GGAC-GTCT-TTCCAACGT-TCTAA-TTTACTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACCAAGGTTA-AAAAGA--CGTC--TT-TTTTACGTCTTATATGTCTGCTGgtgtctgctgg
gi|15 : -CTAT--TGCGTCTTTATGATG-TC-AACTGACGTCAGCA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTC---GT-AA--------AC------------------AGACACCGCTTTCGG-A--CATCAATA
gi|16 : GT-TCTAA-TTTAATTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGAGGTCT--TATGTCTGTTG
gi|17 : TAA-TTTAGTTATTTGA--CGTCA---TAACCA-GA-----------------------------------TTTGACGTCT--TATGTCTGCTGG
gi|19 : taTTCGATGTC-TTATTCC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-A
gi|2 : CTGACG-TCTTTCAAAC---CTTAT-CC-TTGTCCGTCATTTCAGGGGCAAATAAATGCT-ATAATGTCACA-CTTT--GAC-TCTTTATGATGTTC-CACTGACGTCAGAA-A-GACG--GAAATA----G-----A-----A-TGTGTTTCTT-GT-GA-----TCTACA-------CG---ACTGTAGA-ACCTCTTTCGGAA--CATCAATACGAC-GTAA-AA-ACATCG--TA-GTTTTGC--AACG-TTGA-AATGGGGA-CCGG-TATAG-AACA--A--GGAC-GTCT-TTCTGACGG-TTTAA-TATAGTTCTTTCA--CGTCAC--TAACCA-GA-TT-CACACC----T---AAAAGA--CGTC--TT-TTAGCAATCT--TATATCTGCTGG
gi|20 : ta--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|3 : aacCCTAACA-TCTCTTCAACGTCCT-AT-CCCTAA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGCCTTT---ATG-TC-AACTGACATCAGAA-A-GAGG--TAAAAA----AAAACCA-----A-CGTA-TTCTT-GT-GACG---TCTTCA-------CT---AC-GTAGACACCGCTTTCGT-A--CATCAATAAGAC-GT-A-AA-ACAATG--TA-TTTTTGT--GATG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--AGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--TGTCA---TAACCA-GATTT-CA-ACA-----TA-AAAAAACCCATC--TT-TTTGACGTCT--TATGTCTGCTGGg
gi|4 : aCCTGACG-TCTTTTCAACGTCTTTAT-CC-TGA--CGT-TTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--AACGTCTTTATGATG-TC-A-CTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACTGCTTTCGG-A--C-TCAATACGA--GTAA-AA-ACA-CG--TA-GTTTTGC--GACG-TTAA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTTTGACGT-TCTAA-TTTAGTTCTTTGA--CGTCA---TAACCA-GTTTT-CA-ACC----TAAGAAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|5 : -AAAA--A--TGAC-GTCT-TTCCGACGT-TCTAA-TTAAGTTATTTGA--CGT-----TGAC-A-GATTC-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTAACGTCT--TATGTCTGCTGG
gi|6 : -T-ATTATTTCACA-CTAT--TACATCTTTATGATG-TC-AGTCGACGTCAGAA-A-GACG--TATACA----G-----A-----A-CGTA-TTTTT-GT-GATGT--T-TACAGACTTAACG---AC-TTAGACATCGCTATCCG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-TTGTTGC--GATG-TTGA-AAT---TA-C--G-TAT---AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGATATTTGA--CGTCA---TAACCA-CATTT-CA-ATC----TT--AAAAGA--CGTC--AT-TTTGACGTCT--TATTTGTGCTGGgtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|7 : ACA-CTATATTACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-AACG--TATAAA----G-----A-----A-CGTA-TTCTT-A--AATGT--ATT-CG-------TG---A--ACAGACACCGCTTTCAG-A--CATCAATAAGAC-GTAA-AA-ACA------------------ACG-TTGA-ATT---GA-T--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAATTTTAGTTATTTGA--CGTCA---TAACCA-GATCT-TA-
gi|8 : CCTGACG-TCT---CAACGTC-TTA---C-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T--------CACT-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-AAGACG--TAAAAAAGAAG-----A-----A-CGTA-TTCTTTGTTGACGT--T-TACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTTA-AA-ACAACG--TA-G-TTTGC--AACGTTTGA-AAT---GACC--C-TAT-G-AAAA--A--GAACGGTCT-ATCCGACGT-TATAtgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|9 : ttaGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT---CTACA-------TG---AC-GTAGACACCGCATTTGG-A--CATCAATAAGACCGTAC-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--C-TAT-G-AAAA--A--GGAT-GTCT-TTCCTACGT-TCTAA-TTTAGTTATTTGA--CGGCA---TA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTCATGATTGAGAAGCCTTCACATACTACCAAAAAAAATCAGAA
Alignments
lowQualScore : 1 11111 1111111 111 11111111
lowQualScore : 6 1 6 5 5 1 77 5 5 5 5 7 4 66 4 4 3 7 55 7777 99999999999 3 3 7 3 2 88888 1111111 666 3 4 55 4 4 4 3 55 444 55 7 3 111 3 55 3 3 3 44 44 3 3 3 3 44 888 3 6 3 33333333 55 55 3 55
lowQualScore : . . . . . . .. . . . . . . .. . . . . .. .... ........... . . . . . ..... ....... ... . . .. . . . . .. ... .. . . ... . .. . . . .. .. . . . . .. ... . . . ........ .. .. . ..
lowQualScore : 7 7 6 0 7 4 99 7 7 0 0 3 4 11 4 4 6 3 00 7777 22222222222 6 6 3 6 0 77777 8888888 444 6 0 55 0 0 0 4 55 777 00 3 6 444 6 00 6 6 3 66 22 3 3 1 1 22 555 3 7 3 77777777 00 00 6 00
consensus : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
Reference ( family-2441 ) : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|1 : CCTGCCGCTCTTTTCACAGTGCTTAT-CCCTGA--CGTCTTTTCAGGG-CAA-TAAATG-TCAT-ATGTCACATTTAT--TGCGTCTTTATGATG-TCAAACTAAC-TCAGAACA-GACG--TGAAAA----G-----A-----ACCGTA-TTCTTAGT-GACG---TCTACA-------CG---AC-GTAGACACCG-TTTCAG-A--CATCAATAAGAC-GTAA-AA-ACAATAACTA-G-TTTGC--GA-G-CTGA-AAT----A-C--G-TAT-G-AAAA--ATCGGAC-GTCT-TTCCGACGT-TCTAA-GTAAGTTA-TTGA--CTTGA-------CA-GATTCACA-ACC----TTA-AAAAGA--CGTC--TTGTTTAACGTCT--T-T-TCTGCTGG
gi|10 : TGACA-TCTTTTCAACGTCCT-AT-CC-CGA--CGTCTTTTCGGGG-CAA-TAAATG-T-ATGGTGTCACA-CTAA--TACGTCTTTATGATG-TC-AACTGACGACAGAA-A-GACG--TAAAAA----G-----A-----A-TGTA-TTCAT-AT-GACA---TCTATA-------CA---AC-GTAGCCACCGCTTTCtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|11 : GAC-GTAA-CATAAAACG--TA-GTTTTGC--GACG-T-----GT---G--C--GATAT-GGAAAA--A--GGAC-GTCTCTTCCGACGTCTCTAA-TTTAGTTATT-GA--CGTCA---TAACCA-GATTT-CA-ACCT---TTA-AAAAGA--CGTCTTTT-TTTGACGTCT--TATGTCTGCTGG
gi|12 : ACTGGAGTCAGAA-AAGACGGGTAAAAG----G-----AGAGAGA-CATA-------AT-GGCGTAAGC-AAA-------CGGGGAC-GTAGACAC-GCTTTCGG-AAACATCAAAAATAC-GTAAAAA-ACAACG--TAGGGTTTGC--GACG-TTGACAATGG-GA-C--G-TAT-G-AAAA--A--
gi|13 : -GTTGTGCTGAACGCTTGA-AAT---GA----G-TAT-G-AAATTTA--GGTA-GTCT-TTCCGATGT-T-TAA-TTTAGTTATTCGACGCGTCAAATTAAACAGGATTTGCA-ACC----TTa
gi|14 : --GGAC-GTCT-TTCCAACGT-TCTAA-TTTACTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACCAAGGTTA-AAAAGA--CGTC--TT-TTTTACGTCTTATATGTCTGCTGgtgtctgctgg
gi|15 : -CTAT--TGCGTCTTTATGATG-TC-AACTGACGTCAGCA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTC---GT-AA--------AC------------------AGACACCGCTTTCGG-A--CATCAATA
gi|16 : GT-TCTAA-TTTAATTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGAGGTCT--TATGTCTGTTG
gi|17 : TAA-TTTAGTTATTTGA--CGTCA---TAACCA-GA-----------------------------------TTTGACGTCT--TATGTCTGCTGG
gi|19 : taTTCGATGTC-TTATTCC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-A
gi|2 : CTGACG-TCTTTCAAAC---CTTAT-CC-TTGTCCGTCATTTCAGGGGCAAATAAATGCT-ATAATGTCACA-CTTT--GAC-TCTTTATGATGTTC-CACTGACGTCAGAA-A-GACG--GAAATA----G-----A-----A-TGTGTTTCTT-GT-GA-----TCTACA-------CG---ACTGTAGA-ACCTCTTTCGGAA--CATCAATACGAC-GTAA-AA-ACATCG--TA-GTTTTGC--AACG-TTGA-AATGGGGA-CCGG-TATAG-AACA--A--GGAC-GTCT-TTCTGACGG-TTTAA-TATAGTTCTTTCA--CGTCAC--TAACCA-GA-TT-CACACC----T---AAAAGA--CGTC--TT-TTAGCAATCT--TATATCTGCTGG
gi|20 : ta--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|3 : aacCCTAACA-TCTCTTCAACGTCCT-AT-CCCTAA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGCCTTT---ATG-TC-AACTGACATCAGAA-A-GAGG--TAAAAA----AAAACCA-----A-CGTA-TTCTT-GT-GACG---TCTTCA-------CT---AC-GTAGACACCGCTTTCGT-A--CATCAATAAGAC-GT-A-AA-ACAATG--TA-TTTTTGT--GATG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--AGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--TGTCA---TAACCA-GATTT-CA-ACA-----TA-AAAAAACCCATC--TT-TTTGACGTCT--TATGTCTGCTGGg
gi|4 : aCCTGACG-TCTTTTCAACGTCTTTAT-CC-TGA--CGT-TTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--AACGTCTTTATGATG-TC-A-CTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACTGCTTTCGG-A--C-TCAATACGA--GTAA-AA-ACA-CG--TA-GTTTTGC--GACG-TTAA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTTTGACGT-TCTAA-TTTAGTTCTTTGA--CGTCA---TAACCA-GTTTT-CA-ACC----TAAGAAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|5 : -AAAA--A--TGAC-GTCT-TTCCGACGT-TCTAA-TTAAGTTATTTGA--CGT-----TGAC-A-GATTC-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTAACGTCT--TATGTCTGCTGG
gi|6 : -T-ATTATTTCACA-CTAT--TACATCTTTATGATG-TC-AGTCGACGTCAGAA-A-GACG--TATACA----G-----A-----A-CGTA-TTTTT-GT-GATGT--T-TACAGACTTAACG---AC-TTAGACATCGCTATCCG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-TTGTTGC--GATG-TTGA-AAT---TA-C--G-TAT---AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGATATTTGA--CGTCA---TAACCA-CATTT-CA-ATC----TT--AAAAGA--CGTC--AT-TTTGACGTCT--TATTTGTGCTGGgtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|7 : ACA-CTATATTACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-AACG--TATAAA----G-----A-----A-CGTA-TTCTT-A--AATGT--ATT-CG-------TG---A--ACAGACACCGCTTTCAG-A--CATCAATAAGAC-GTAA-AA-ACA------------------ACG-TTGA-ATT---GA-T--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAATTTTAGTTATTTGA--CGTCA---TAACCA-GATCT-TA-
gi|8 : CCTGACG-TCT---CAACGTC-TTA---C-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T--------CACT-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-AAGACG--TAAAAAAGAAG-----A-----A-CGTA-TTCTTTGTTGACGT--T-TACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTTA-AA-ACAACG--TA-G-TTTGC--AACGTTTGA-AAT---GACC--C-TAT-G-AAAA--A--GAACGGTCT-ATCCGACGT-TATAtgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|9 : ttaGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT---CTACA-------TG---AC-GTAGACACCGCATTTGG-A--CATCAATAAGACCGTAC-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--C-TAT-G-AAAA--A--GGAT-GTCT-TTCCTACGT-TCTAA-TTTAGTTATTTGA--CGGCA---TA
blockSeqs : . T C T T C TC G A C . G . AT T . . A GG AGAA AGAGAG . T T T C TAAGC GACTTAA GGG T A AA C A T A . GGG TG C C GGG C CG A A G TT . G C C T CG AAT G G C AAGGTTA CC TT . TA
blockSeqs : . T C T . . . . . . . A . . . . . A . . AAACCA . . . . C TTC . . . . . . . . A . GT . T . GG . . . . . . . . . . . . C . . . TTTA . . . .
blockSeqs : . C C T . . . . . . . A . . . . . . . . A . . . . C TAT . . . . . . . . T . GT . . . . . . . . . . . . . . . . . . . . TAAG . . . .
blockSeqs : . T T T . . . . . . . A . . . . . . . . A . . . . C TC . . . . . . . . A . GT . . . . . . . . . . . . . . . . . . . . TTA . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . A . . . . T TC . . . . . . . . A . TT . . . . . . . . . . . . . . . . . . . . TTA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . . . . T TC . . . . . . . . A . GT . . . . . . . . . . . . . . . . . . . . TA . . . .
blockSeqs : . . . . . . . . . . A . . . . C TT . . . . . . . . A . TT . . . . . . . . . . . . . . . . . . . . TT . . . .
blockSeqs : . . . . . . . . A . . . . C TT . . . . . . . . . . GT . . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . A . . . . . TC . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** GT* ** TTA*****
originalCons : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
finalCons : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TAGT-TTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACCTTA-----AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTCATGATTGAGAAGCCTTCACATACTACCAAAAAAAATCAGAA
Alignments
lowQualScore : 1 11111 1111111 111 11111111
lowQualScore : 6 1 6 5 5 1 77 5 5 5 5 7 4 66 4 4 3 7 55 7777 99999999999 3 3 7 3 2 88888 1111111 666 3 4 55 4 4 4 3 55 444 55 7 3 111 3 55 3 3 3 44 44 3 3 3 3 44 888 3 6 3 33333333 55 55 3 55
lowQualScore : . . . . . . .. . . . . . . .. . . . . .. .... ........... . . . . . ..... ....... ... . . .. . . . . .. ... .. . . ... . .. . . . .. .. . . . . .. ... . . . ........ .. .. . ..
lowQualScore : 7 7 6 0 7 4 99 7 7 0 0 3 4 11 4 4 6 3 00 7777 22222222222 6 6 3 6 0 77777 8888888 444 6 0 55 0 0 0 4 55 777 00 3 6 444 6 00 6 6 3 66 22 3 3 1 1 22 555 3 7 3 77777777 00 00 6 00
consensus : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
Reference ( family-2441 ) : CCTGACG-TCTTTTCAACGTCCTTAT-CC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|1 : CCTGCCGCTCTTTTCACAGTGCTTAT-CCCTGA--CGTCTTTTCAGGG-CAA-TAAATG-TCAT-ATGTCACATTTAT--TGCGTCTTTATGATG-TCAAACTAAC-TCAGAACA-GACG--TGAAAA----G-----A-----ACCGTA-TTCTTAGT-GACG---TCTACA-------CG---AC-GTAGACACCG-TTTCAG-A--CATCAATAAGAC-GTAA-AA-ACAATAACTA-G-TTTGC--GA-G-CTGA-AAT----A-C--G-TAT-G-AAAA--ATCGGAC-GTCT-TTCCGACGT-TCTAA-GTAAGTTA-TTGA--CTTGA-------CA-GATTCACA-ACC----TTA-AAAAGA--CGTC--TTGTTTAACGTCT--T-T-TCTGCTGG
gi|10 : TGACA-TCTTTTCAACGTCCT-AT-CC-CGA--CGTCTTTTCGGGG-CAA-TAAATG-T-ATGGTGTCACA-CTAA--TACGTCTTTATGATG-TC-AACTGACGACAGAA-A-GACG--TAAAAA----G-----A-----A-TGTA-TTCAT-AT-GACA---TCTATA-------CA---AC-GTAGCCACCGCTTTCtagtctcatgaataattcagaatattcaaccaatacaatagtctaacaagaatcaagaaccaataaggaatcgatttactttaaagctgtattcggttgtaagtttacatttcaaaaaataatgcatgattcataattataaaatagataaaattgagctgaattaagctaaagt
gi|11 : GAC-GTAA-CATAAAACG--TA-GTTTTGC--GACG-T-----GT---G--C--GATAT-GGAAAA--A--GGAC-GTCTCTTCCGACGTCTCTAA-TTTAGTTATT-GA--CGTCA---TAACCA-GATTT-CA-ACCT---TTA-AAAAGA--CGTCTTTT-TTTGACGTCT--TATGTCTGCTGG
gi|12 : ACTGGAGTCAGAA-AAGACGGGTAAAAG----G-----AGAGAGA-CATA-------AT-GGCGTAAGC-AAA-------CGGGGAC-GTAGACAC-GCTTTCGG-AAACATCAAAAATAC-GTAAAAA-ACAACG--TAGGGTTTGC--GACG-TTGACAATGG-GA-C--G-TAT-G-AAAA--A--
gi|13 : -GTTGTGCTGAACGCTTGA-AAT---GA----G-TAT-G-AAATTTA--GGTA-GTCT-TTCCGATGT-T-TAA-TTTAGTTATTCGACGCGTCAAATTAAACAGGATTTGCA-ACC----TTa
gi|14 : --GGAC-GTCT-TTCCAACGT-TCTAA-TTTACTTATTTGA--CGTCA---TAACCA-GATTT-CA-ACCAAGGTTA-AAAAGA--CGTC--TT-TTTTACGTCTTATATGTCTGCTGgtgtctgctgg
gi|15 : -CTAT--TGCGTCTTTATGATG-TC-AACTGACGTCAGCA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTC---GT-AA--------AC------------------AGACACCGCTTTCGG-A--CATCAATA
gi|16 : GT-TCTAA-TTTAATTATTTGA--CGTCA---TAACCA-GATTT-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTGAGGTCT--TATGTCTGTTG
gi|17 : TAA-TTTAGTTATTTGA--CGTCA---TAACCA-GA-----------------------------------TTTGACGTCT--TATGTCTGCTGG
gi|19 : taTTCGATGTC-TTATTCC-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T-A
gi|2 : CTGACG-TCTTTCAAAC---CTTAT-CC-TTGTCCGTCATTTCAGGGGCAAATAAATGCT-ATAATGTCACA-CTTT--GAC-TCTTTATGATGTTC-CACTGACGTCAGAA-A-GACG--GAAATA----G-----A-----A-TGTGTTTCTT-GT-GA-----TCTACA-------CG---ACTGTAGA-ACCTCTTTCGGAA--CATCAATACGAC-GTAA-AA-ACATCG--TA-GTTTTGC--AACG-TTGA-AATGGGGA-CCGG-TATAG-AACA--A--GGAC-GTCT-TTCTGACGG-TTTAA-TATAGTTCTTTCA--CGTCAC--TAACCA-GA-TT-CACACC----T---AAAAGA--CGTC--TT-TTAGCAATCT--TATATCTGCTGG
gi|20 : ta--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|3 : aacCCTAACA-TCTCTTCAACGTCCT-AT-CCCTAA--CGTCTTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--TACGCCTTT---ATG-TC-AACTGACATCAGAA-A-GAGG--TAAAAA----AAAACCA-----A-CGTA-TTCTT-GT-GACG---TCTTCA-------CT---AC-GTAGACACCGCTTTCGT-A--CATCAATAAGAC-GT-A-AA-ACAATG--TA-TTTTTGT--GATG-TTGA-AAT---GA-C--G-TAT-G-AAAA--A--AGAC-GTCT-TTCCGACGT-TCTAA-TTTAGTTATTTGA--TGTCA---TAACCA-GATTT-CA-ACA-----TA-AAAAAACCCATC--TT-TTTGACGTCT--TATGTCTGCTGGg
gi|4 : aCCTGACG-TCTTTTCAACGTCTTTAT-CC-TGA--CGT-TTTTCAGGG-CAA-TAAATG-T-ATAATGTCACA-CTAT--AACGTCTTTATGATG-TC-A-CTGACGTCAGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT--TCTACA-------CG---AC-GTAGACACTGCTTTCGG-A--C-TCAATACGA--GTAA-AA-ACA-CG--TA-GTTTTGC--GACG-TTAA-AAT---GA-C--G-TAT-G-AAAA--A--GGAC-GTCT-TTTTGACGT-TCTAA-TTTAGTTCTTTGA--CGTCA---TAACCA-GTTTT-CA-ACC----TAAGAAAAGA--CGTC--TT-TTTGACGTCT--TATGTCTGCTGG
gi|5 : -AAAA--A--TGAC-GTCT-TTCCGACGT-TCTAA-TTAAGTTATTTGA--CGT-----TGAC-A-GATTC-CA-ACC----TTA-AAAAGA--CGTC--TT-TTTAACGTCT--TATGTCTGCTGG
gi|6 : -T-ATTATTTCACA-CTAT--TACATCTTTATGATG-TC-AGTCGACGTCAGAA-A-GACG--TATACA----G-----A-----A-CGTA-TTTTT-GT-GATGT--T-TACAGACTTAACG---AC-TTAGACATCGCTATCCG-A--CATCAATAAGAC-GTAA-AA-ACAACG--TA-TTGTTGC--GATG-TTGA-AAT---TA-C--G-TAT---AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAA-TTTAGATATTTGA--CGTCA---TAACCA-CATTT-CA-ATC----TT--AAAAGA--CGTC--AT-TTTGACGTCT--TATTTGTGCTGGgtagtctcatgaataattcagaatattcaaccaattacaatagtctaacaaagaatcaagaaccaataaggaatcgatttactaaagcgtattcgggttgtaagtttacatttcaaaaaatggcatcgatccataattataaatagataaaattgagctgaattaagctaaag
gi|7 : ACA-CTATATTACGTCTTTATGATG-TC-AACTGACGTCAGAA-A-AACG--TATAAA----G-----A-----A-CGTA-TTCTT-A--AATGT--ATT-CG-------TG---A--ACAGACACCGCTTTCAG-A--CATCAATAAGAC-GTAA-AA-ACA------------------ACG-TTGA-ATT---GA-T--G-TAT-G-AAAA--A--GGAC-GTCT-TTCCGACGT-TCTAATTTTAGTTATTTGA--CGTCA---TAACCA-GATCT-TA-
gi|8 : CCTGACG-TCT---CAACGTC-TTA---C-TGA--CGTCTTTTCAGGG-CAA-TAAATG-T--------CACT-CTAT--TACGTCTTTATGATG-TC-AACTGACGTCAGAA-AAGACG--TAAAAAAGAAG-----A-----A-CGTA-TTCTTTGTTGACGT--T-TACA-------CG---AC-GTAGACACCGCTTTCGG-A--CATCAATAAGAC-GTTA-AA-ACAACG--TA-G-TTTGC--AACGTTTGA-AAT---GACC--C-TAT-G-AAAA--A--GAACGGTCT-ATCCGACGT-TATAtgtctgctgggaagtaccatgattagtcatagtaatatgcaatca
gi|9 : ttaGAA-A-GACG--TAAAAA----G-----A-----A-CGTA-TTCTT-GT-GACGT---CTACA-------TG---AC-GTAGACACCGCATTTGG-A--CATCAATAAGACCGTAC-AA-ACAACG--TA-GTTTTGC--GACG-TTGA-AAT---GA-C--C-TAT-G-AAAA--A--GGAT-GTCT-TTCCTACGT-TCTAA-TTTAGTTATTTGA--CGGCA---TA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTCATGATTGAGAAGCCTTCACATACTACCAAAAAAAATCAGAA