lowQualScore : 111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111 111111111111111111111111111111111111111 111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 11111 000000000000000000000000000000000000 1111 11111 77777777777777777777777777777777777777777777777777777777777777777 2222222 111 22222 111 2222222 22 11111 11111 1 1111 111 333333333333333333333 1 3333333333333333333 111 2222222222 111 11 1 111 111111 1 1111 1 111 2222 1111111111111111111111111111111 1 111 111 11 1111111 2222222222 11 2222222 111 111 11111 1 7777777777777777777 444444444 222 44444444444 11 2 2222 555555555555 33333333 333333333333333333333333333333333333333 111 11111 222 22222 222222 11 1111 444444444444444444444444444444444 11 1 1 2222222222222222222 1 111 3333 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 1 11 1 1
lowQualScore : 33 99999 888888888888888888888888888888888888 4444 8 8 77777 0 8 22222222222222222222222222222222222222222222222222222222222222222 2222222 111 55555 111 8888888 5 11 5 5 5 22222 5 44444 2 5 888 5 5 0 2222 5 777 5 111 5 777777777777777777777 5 0 5 77 4444444444444444444 444 7777777777 444 8 8 999 66 2 111 6 555555 6 6 99 0 5 4444 1 5 5 5 5 111 3333 8888888888888888888888888888888 6 3 6 6 6 6 3 5 5 5 77 4 111 000 5 5 11 77 5 5 5 5 5 0 8888888 0 6666666666 5 11 88 3333333 0 8 8 000 8 8 8 8 1 8 3 0 222 11111 0 7777777777777777777 3 000000000 8 555 8 8 0 00000000000 22 0 0000 000000000000 3 22222222 3 3 999999999999999999999999999999999999999 555 6 66666 99 222 33333 33 99 6 0 222222 8 0 8 11 7777 222222222222222222222222222222222 33 0 0 9999999999999999999 9 0 777 2 1111 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 6 0 33 0 2 3
lowQualScore : .. ..... .................................... .... . . ..... . . ................................................................. ....... ... ..... ... ....... . .. . . . ..... . ..... . . ... . . . .... . ... . ... . ..................... . . . .. ................... ... .......... ... . . ... .. . ... . ...... . . .. . . .... . . . . . ... .... ............................... . . . . . . . . . . .. . ... ... . . .. .. . . . . . . ....... . .......... . .. .. ....... . . . ... . . . . . . . . ... ..... . ................... . ......... . ... . . . ........... .. . .... ............ . ........ . . ....................................... ... . ..... .. ... ..... .. .. . . ...... . . . .. .... ................................. .. . . ................... . . ... . .... . .............................................................................................. ... . . .. . . .
lowQualScore : 22 00000 999999999999999999999999999999999999 8888 0 0 88888 8 0 22222222222222222222222222222222222222222222222222222222222222222 8888888 777 88888 777 3333333 7 44 7 7 0 55555 0 66666 5 0 888 0 0 0 2222 0 666 0 000 0 444444444444444444444 0 8 0 11 5555555555555555555 222 0000000000 000 0 0 000 66 6 777 7 555555 7 7 22 8 7 7777 6 7 7 7 7 777 3333 9999999999999999999999999999999 7 7 7 7 7 7 3 7 7 7 99 4 000 000 7 7 77 99 7 7 7 7 7 1 6666666 1 3333333333 7 77 33 4444444 8 0 0 888 0 0 0 0 0 0 0 8 222 44444 0 5555555555555555555 8 666666666 0 000 0 0 8 22222222222 00 0 0000 888888888888 2 88888888 2 2 888888888888888888888888888888888888888 222 7 22222 22 888 33333 00 22 7 8 888888 0 8 0 00 0000 888888888888888888888888888888888 88 0 0 8888888888888888888 2 0 555 5 5555 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 000 0 0 88 0 5 3
consensus : GTGCTTGAAAA-TGCG--TTNAAAAGGCCGTATTT-TAT-A---TAT-ATAA---G----CCAA-G-GCTA-CA-AG-ATCACACACCAT-TGTAT-------------------C-A--------------------ACA--------------------TGAGGG-----CTGTA---GAA----TGA---ATA-------TAG-TTCAAAA-CGA-T-ATTTT-AAAA-----CA-A--GT-TNTC-T---TAT-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-C----N--TA----T-------AAT-GGC-TTTA-AAT------------C--CA--AAGATNT-GGGGTGT-------G--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C----TCACT-CG-AG--ATTTCATCT-CN--GGTGAGCTA-AAACA-TTTTGGCTCA-CCAG---TG----AAATGACAAAACTAG--T-ATTGGAT---AT--T--A-AACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--A---AAG-GAAAA-CG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTTA-TTTC-CCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT-G-CAAAAA-GGGT-------------------CAAGTTTCTG----TAA-TGGGT-GATTT-T-GAAAC-TGAA-CGAGGNATA---GTCACCAGTATCTAAC-ATG--G-TTTT-----------AGTATATTC------G-AATGATATTGTAAAA-----------------A--AA-----------------TCAACAGCATT-A-CATAAAGT-GCATAA---TCTT--TGTTGTTG--GGGTAT-----TTTCTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAG----TTA-------------TA-----AATTTAA-GTGAGATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( gi|3 ) : GTGCTTGAAAA-TGCG--CTAAAAAGGCTGTATTT-T-------TAT--------G----CCAA-G-GCTA-CA-AG-ATCCCACACCAT-TGTAT-------------------C----------------------ACA--------------------TGAGGA-----CTATA---GAA----TGA---ATA-------TAG-TTCAAA--CGA-T-ATTTT-AAAA-----CA-A--GT-TGTC-T---TAT-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-C----A--TA----T-------AAT-GAC-TTTA-AAT------------C--TA--AAGATTT-GGGGTGT-------G--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C----TAACT-CG-AG--ATTTTATCT-CG--GGTAAACTA-AAACA-TTTTTGCTCA-CCAG---TG----AAATGACAAAACTAG--T-ATTGGATGTTGT--T--A-AACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AAT-GAAAA-CA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGAAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCA-TATC-CCA-ATTC-T-AGTGAT-TATTTTATAAAAAT-G-CAAAAA-GGGT-------------------CAAGTTTCTG----TA--TGGGT-GATTT---GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-ATG--G-TTTT-----------AGTATATTT------G-AATGATATTGTAAAA-----------------A---------------------TCAACAGCATT-A-CATAAAGT-GCATCA---TCTT--TGTTGTTG--TGGTAT-----TTTCTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAG----TTA-------------TA-----AA-----------ATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG--TTAAAA-GGCCGTATTT-TATT----CAT--------GATAGCCA--G-GCTA-CA-AATATCACACACCAT-TGTAT-------------------C----------------------ACAAGGATGGTGATTTCTATACATGAGGG------TATA---GA-----TGA---ATA-------TAG-TTCAAAA-CGA-T-ATTT---AAA-----CA-A---T-TGTC-T---TATTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-C----T--TA----T-------AAT-GGC-TTTAGAAT------------C--CA--AAGATGT-GGGGTGT-------G--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C----TCACTCCG-AGTCATTT--TCTGCT--GATAAACTA-AAACATTTTTTGCTC--CCAG---AGGA--AAATGACAAAATAAG--T-ATTG------AT--TAAA-AACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AAG-AAAAA-CA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|10 : tTGCTTGAAA--TGCAAACATAAAAGACC--ATTTAT-------CATAATAA---G----CCAC-GAGCTA-CA-AA-----CACACAAAATGTAT-------------------C----------------------ACA--------------------TG-GAAGTCTTCTATA---CA-----TGA---AGA-------TAG-TTCAAAACCGA-T-A-TTT-GAAA-----CACA--G--TGTC-TATATAT-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-C----A--T-----T-------AAT-G-C-TTTA-AActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|5 : aaatatTTGAAAA-TGTG--GTCGAA---------TT-T-------TATCATAAGAAG----CCAA-G-GCTA-CA-AG-ATCACACACCAT-TGCAT-------------------CTAT-------------------ATA--------------------TGAGGG-----CCGTAACAGAAATAGTGATTTATAACAGAAATAG-TTAAAA--AAAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TTT-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-C----T--TAAAGGTCAACTGAAAC-GGT-TTTC-AACATTCGGTTATTGC--TATTAAAAGTT-GAAATGTGCAGTGTG--GTTC---TTTCGAAA-TGT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C----TCACT-AG-AT--ATTTCATCT-CG--GGTGGGCTA-AAACA-TTTTGGCTCA-CTAaatcccaagctgt
gi|2 : A-TGCG--TTAAAAAG-CCGTATTA-TCAAA---TAT--------G----CCTATA-GCTAACATAG-ATCA-AC-CCAT-TGTAT-------------------TCAACATGAATCAAATCTCCTATACA--------------------TGAGAG-----TTATA---GAT----TAA---ATA-------TAGATTCAAAAACTA-TTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TA--A-TAATCGATCTAT-AA--GCATTTCT-GAAC-ACGCTTTGA--TA------------AAT-G-C-TCTA-A--------------C--CA--AAGAT---GTGGTGG-------G--ATTC---TTTCGAAAATGT-TAA-A-AGTTA-TAGACAA--GGAT---AAAAAC----TCACT-CG-AG--ATTTCATCT-CG----TAAAC-A-AAACA-TTTT-GCTCA-CCAG---TG----AA-TGCAAAAACTAG--T-AT-GGATAC--------A-AACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATC-TA-------TAGA--A---AA--GAAAA-CA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : atgctcttaatatGGC-GTATTT-TATCATAATAA--------G----CCAA-G-GCTA-CA-AG-ATTACACACCAT-TGCATAACATGTATGGCCTTTCTAT----------------------ACA--------------------TGAGTA-----ATGTA---GAA----TAA---ATA-------TAC-TTCAAA--GGA-T-ATTGT-AATG-----CA-A--TT-TTTC-T---TAT-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-T----T--TA----T-------ATT-GGC-GTTgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|9 : CA--------------------TGAGGG-----CTGTA---GAA----TAG---ATAA------TAG-TTCAAA--CGA-T-ATTTT-AAAA-----CA-G--TT-TTTG-T---TAT-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-C----T--TA----T-------AAT-AAC-TTT---AT------------C--CA--AATATctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|4 : tgtgcttgacaaggtcgtattttatcataagtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGA-T-ATTTTTAAAA-----CA-A--GT-TGTT-C---TAT-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-C----A--TG----T-------AAT-GGC-TTTA-AAT------------C--CA--AAGATGT-GGGGTGT-------G--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N----NNNNN-NN-NN--NNNNNNNNN-NN--NNNNNNNNNTAAACA-TTTTGTCTCA-CCAG---TG----AAATAACA-------------------------------ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAA-C---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTTgt
gi|7 : T-AAAA-----CA-A--GT-GTTCAT---TAT-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-C----GCCTA----T-------AATCGACATTTA-AAT------------CCCTA--TAGATTTCGGGGT-T-------GGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CT--CGGAAACTA-AATCA-TTCTAGCTCACCCAG---TGATACAGATGAC---ACTAG--TCATTGG-TGATATCCT--C-AACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC------AAT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTTtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|6 : aT---ACAA-C----TCTTT-CG-AG--ATTTCATCT-CT--GGTGAGCTA-AAAAG-TTTTGGCTCA-CTGG---CG----AGACGACAAGGCTATATT-ATTGAA----GT--A--ACAACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---ATG-GAGAA-CG-TGTATGCTTTTA-Ttgagtatgttaacat
gi|6 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCT-CGCCAGTGAGCCA-AAACT-TTTTAGCTCA-CCAGAGATG----AAAT
gi|5 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgag-AACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAA-CG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAcgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|15 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---ATG-GAAAA-CT-TGTATATTTtaggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|1 : TGGACCTTTCAATATC-CCAGATTCCT-AGGGATCTGTTTTA-AAAAGT-A-AAAAAA-GGGT-------------------CAGTTTCCTG----TAATTGAGTCGATTTTTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATG--GGTTTT-----------AGTATATTT------G-A-TGATATTGTAAAA-----------------AAGAAA----------------TGAACAGCATT-AACATAAAGT-GCATAA---TCTT--TGTTGTTGT-TGGTAT-----TTTCTTATGCGTCT-ACCAGTTTCTACACAG-AAACAGTGGGCCACTTACTT--CTGAG----TTATCAAATTTAATGGTA-----AA-----------ATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACAa
gi|5 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGGACTTTTTA-TTTC-TCA-ATTC-T-AGTGAG-TGT-----AAAAGT-G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATA--TGGGT-GATCT---GAGAC-TGAA-CGAGGAATA---GT------TATTTAAC-ATG--T-TTTTTTTTTTTTTTAAGTGTATTCCTAAAGA-AATGAAAT--TCATC-----------------A---------------------TCAACAGCATT-A-CAAAGAGT-ACATAA---TCTT--TGTTGCTG--GGGTATTTTAATTTCTGAT--GTCT-ACCGGTTTCT--------AGTAGT-GGTCATTTG-TT--TTGAA----TTA-------------TA-----AATTTAAGATGAGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|4 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgGACCTTTTA-TATC-CTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT-GGCAAAAA-GGGT-------------------CAAGTTTCTG----TA--TGGGT--ATTT---GAAAC-TGAA-CGAGA--TA---GT-ACCAGTATC-AACGATG--G-TTTT-----------AGTATATTT------G-AATGATATTGTAAAA-----------------AGAAATGAAATTCGTCGATAGATCAACAGCATT-T-CTTAAAGT-GCATAA---TCTT--TGTTGTTG--GGGTAT-----TTTTCTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAG----TTA-------------TA-----AATTTAATGTAAAATTTATC--GG-GCAACACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtcaggaatcctt
gi|2 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtGACTTTTCA-ATTT-CCA-ATTC-TCAGTGAT-TGTTT-ATAAAGTTTG-CAAAAAAGGGT-------------------CA---TTCT---------TGG-T-GATTTAT-GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCATGTAG-TTT-------------ATAT-TTT------GTAATGATATTGTAAAAGAAATAAAATTCCCTCTA---------------------TCAACAGCATTTA-CATAAAGTCGCATTAGAATCTTATTTTTGTTGGATGGTATT----TTTCGCAG--GCGTGACCAGT---CACGCAGAAAACATT-GACCAC-TG-TCGACTAAGAAATTTA-------------TATGCCCGA-----------ATTTGAC--GGTGCA-CACGGAACATTT-TACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|12 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtTTTA-TTTCTCCA-ATTT-T-ATTGAT-TATTTTTTAAAAGC-G-TAAA
gi|12 : tactaacaaatgtgtgcaccgacgcaaactgAAGTTACT-----TAAACGGGT-GATTT---GAGAC-TGAA-TGAcaacctaataaactccaagtgttggagttaagtgtataatgaagttacttaaacgggtgatttgagactgaatgacaaagatgattttataagtt
gi|14 : tactaacaaatgtgtgcaccgacgcaaactgtttatttctccaattttattgattattttttaaaagcgtaaacaacctaataaactccaagtgttggagttaagtgtataatgAAGA-----------------C---------------------TCAAGAGCATT-G-CAAAAAGT-GCATAA---TCTT--TGTTGTCG--GGG------------------GTCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAA----TTcaaagatgattttataagtt
gi|17 : tatatacagacagacataattcatcatcATAAAGT-GCATAA---TCTT--TGTTGTTT--GGGTAA-----TTTCTTAT--GTCT-ACCAGTTTCT
gi|11 : ------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACAtaataacaaaaacgca
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111 111 4444444444 11111111111111111111111111111111111111111111 55555555555555555555555 111 22222 111 1111111 11 11111 11111 222222222222 1111 33333333333333 11111 111 111 111 2222 1111111 66666666666666666666 1 111111111 11 111 6666666666666666666 2222 2222 111 11 1 1111 333333333333 222222222 1111111111111111111111111111111111111 111 11 1111111 1 444444444444 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 33 33333 444 3 6 2222222222 99 6 6 6 6 88888888888888888888888888888888888888888888 5 33333333333333333333333 000 00000 000 5 8888888 5 55 5 4 11111 4 00000 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 1 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 1 5 6 444 2 5 5 0 77 0 0000 1 3 0000000 1 00000000000000000000 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 444 6 6 6 6 6 6 6 6 555 99 6 8 2222222222222222222 3 9999 8 8 0 9999 8 8 0 77 0 444 77 11 6 4444 888888888888 0 777777777 0 0000000000000000000000000000000000000 6 6 5 000 77 33 8888888 77 5 3 2 5 6 6 99 8 0 000000000000 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ..... ... . . .......... .. . . . . ............................................ . ....................... ... ..... ... . ....... . .. . . ..... . ..... . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . . .. ... . . . . . . ... . . ... . . .. . . . ... . . . . .. . .... . . ....... . .................... . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . . . . . . . ... .. . . ................... . .... . . . .... . . . .. . ... .. .. . .... ............ . ......... . ..................................... . . . ... .. .. ....... .. . . . . . . .. . . ............ .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 22 00000 000 2 7 5555555555 88 7 7 7 7 33333333333333333333333333333333333333333333 7 77777777777777777777777 000 99999 000 7 6666666 0 11 0 4 11111 4 99999 0 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 0 7 6 444 9 7 7 7 11 3 0000 4 6 4444444 4 11111111111111111111 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 888 7 7 7 7 7 7 7 7 777 22 7 0 0000000000000000000 8 4444 0 0 8 6666 0 0 8 00 8 000 44 44 0 0000 888888888888 8 000000000 8 0000000000000000000000000000000000000 7 7 7 000 99 66 1111111 99 7 3 5 7 7 7 22 0 8 888888888888 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG--TTAAAAA---GGCCGTATT-TTATCATAT-ATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGACAAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TC-CCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTT-----------AGTATATTT------G-AATGATATTGTAAAAGA---------------A-------------------TCAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAAT-G-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG--TTNAAAA---GGCCGTATT-TTAT-ATAT-ATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TNTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATNT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CNGGTGAGCTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGACAAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTTATT-TC-CCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGNATA---GTCACCAGTATCTAAC-ATG--G-TTTT-----------AGTATATTC------G-AATGATATTGTAAAAAA---------------A-------------------TCAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAA--G-TG---AGATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG--TT-AAAA---GGCCGTATT-TTAT-TCATGATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTAT-----------C-ACAAGGATGGTGATTTCTATA----------CATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT---AAA-----CA-A---T-TGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGACAAAATAAG--T-ATTG-------AT--TAA-A-A--ACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATC-CCAGATTCCT-AGGGATCTGTTTTA-AAAAGT--A-AAAAAA-GGGT-------------------CAGTTTCCTGTA---ATTGAGTCGATTT-TTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATG--GGTTTT-----------AGTATATTT------G-A-TGATATTGTAAAAAAGAA------------A-------------------TGAACAGCA-TTAACATAAAGT-GCAT---AATCT--TTGTTGTTGTT-GGTA-T-----TTTCTTATGCGTCT-ACCAGTTTCTACACAGAAA-CAGTGGGCCACTTACTT--CTGAGTTATCAAATTTAATGG-TA---AAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACATAAAA---GACCAT----TTATCATA--ATAAGCCAC-GAGCTA-CA-AA---CACACAAAAT-GTAT-----------C-A------------------------------CATG-GAAGTCTTC------------------TATA---CA-----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT-GAAA-----CACA--G--TGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|12 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttccaTTTATT-TCTCCA-ATTT-T-ATTGAT-TATTTTTTAAAAGC--G-TAAAtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|14 : tactaacaaatgtgtgcaccgacgcaaactgAAGA---------------C-------------------TCAAGAGCA-TTG-CAAAAAGT-GCAT---AATCT--TTGTTGTCGG--GG-----------------G--TCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTcaacctaataaactccaagtgttggagttaagtgtataatgaagttacttaaacgggtgatttgagactgaatgacaaagatgattttataagtt
gi|15 : tatatacagacagacataattcatcatcAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCT--TTGTTGTTTG--GGTA-A-----TTTCTTATG--TCT-ACCAGTTTCTa
gi|2 : A-TGCG--TTAAAAA---G-CCGTATTATCAA-ATAT-----GCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATC-A-------------------AATCTCCTATACATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCAAAAACTAG--T-AT-G--GA-T-AC------A-A--ACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCAAT-TT-CCA-ATTC-TCAGTGAT-TGTTT-ATAAA-GTTTG-CAAAAAAGGGT-------------------CA---TTCT-------T-GG-T-GATTTAT--GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCATGTAG-TTT-------------ATAT-TTT------GTAATGATATTGTAAAAGAAATAAAATTCCCTCTA-------------------TCAACAGCATTTA-CATAAAGTCGCATTAGAATCTTATTTTTGTTGGATGGTATT-----TTTCGCAGG--CGTGACCAGT---CACGCAGAAAACATTGA-CCAC-TG-TCGACTAAG-----AAATTTAT--A-TGCCCGAATTTGAC--GGTGCA-CACGGAACATTTT-ACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG--CTAAAAA---GGCTGTATT-TT------T-AT--GCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTAT-----------C-A------------------------------CATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGACAAAACTAG--T-ATTG--GA-T-GT--TGTTA-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCATA-TC-CCA-ATTC-T-AGTGAT-TATTTTATAAAAAT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-ATG--G-TTTT-----------AGTATATTT------G-AATGATATTGTAAAA-----------------A-------------------TCAACAGCA-TTA-CATAAAGT-GCAT---CATCT--TTGTTGTTGT--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAA----------------ATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTTAAAA-----CA-A--GT-TGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAATAACAA-----------------------------------CA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTATA-TC-CTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT--GGCAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-A--TT-T--GAAAC-TGAA-CGAG--ATA---GT-ACCAGTATC-AACGATG--G-TTTT-----------AGTATATTT------G-AATGATATTGTAAAAAG---------------AAATGAAATTCGTCGATAGATCAACAGCA-TTT-CTTAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTTCTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAAT-G-TA---AAATTTATC--GG-GCAACACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgt--TTGAAAATGTGGTCGAATT-TTATCATA--AGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCAT-----------CTAT------------------A----------TATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTTCATCT-CGGGTG----------------GGCT--------------------AAAAC--A--T-TTTG--GC-TCAC--T---A-ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTATT-TC-TCA-ATTC-T-AGTGAG-TGT-----AAAAGT--G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATAT-GGGT-GATCT----GAGAC-TGAA-CGAGGAATA---GT------TATTTAAC-ATG--T-TTTTTTTTTTTTTTAAGTGTATTCCTAAAGA-AATGAAATT----CATC---------------A-------------------TCAACAGCA-TTA-CAAAGAGT-ACAT---AATCT--TTGTTGCTGG--GGTA-TTTTAATTTCTGATG--TCT-ACCGGTTTCT--------AGTAGTGG-TCATTTG-TT--TTGAATTAT-AAATTTAA--GATG---AGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATT-TTATCATA--ATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCAT-------------A-------------------A----------CATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT-AATG-----CA-A--TT-TTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGACAAGGCTATATT-ATTG--AAGT-A-------ACA--ACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AAAA-----CA-A--GT-GTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC---ACTAG--TCATTGGTGA-T-ATCCT---C-A--ACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a----------CATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT-AAAA-----CA-G--TT-TTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-tgagtatgttaacat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 22222 11111111111111111111111111111111111111111111 55555555555555555555555 111 22222 111 1111111 11 11111 11111 222222222222 1111 33333333333333 11111 111 111 111 2222 1111111 66666666666666666666 1 111111111 11 111 111 1111 6666666666666666666 2222 2222 111 11 1 1111 444444444444444444444444444444444 111 11 1111111 1 2222222222 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 77 11111111 3 1 5 44444 99 6 6 6 6 88888888888888888888888888888888888888888888 5 33333333333333333333333 000 00000 000 5 8888888 5 55 5 4 11111 4 00000 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 8 9999 2 5 5 0 77 0000 1 5 3 0000000 1 00000000000000000000 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 444 6 6 000 8 8 8 1 8 0 777 0 2222 8 2222222222222222222 3 9999 8 8 0 9999 8 8 0 66 0 444 44 11 6 4444 11 6 8 88 0 111111111111111111111111111111111 6 6 5 000 77 33 8888888 77 5 3 2 5 6 6 99 8 0 2222222222 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ........ . . . ..... .. . . . . ............................................ . ....................... ... ..... ... . ....... . .. . . ..... . ..... . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . .. ... . . . . . . ... . . ... . . .. . .... . . . . .. .... . . . ....... . .................... . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . ... . . . . . . ... . .... . ................... . .... . . . .... . . . .. . ... .. .. . .... .. . . .. . ................................. . . . ... .. .. ....... .. . . . . . . .. . . .......... .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 55 55555555 2 0 7 22222 88 7 7 7 7 33333333333333333333333333333333333333333333 7 77777777777777777777777 000 99999 000 7 6666666 0 11 0 4 11111 4 99999 1 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 1 4444 9 7 7 7 11 0000 4 7 6 4444444 4 11111111111111111111 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 888 7 7 888 0 0 0 0 0 8 000 8 2222 0 0000000000000000000 8 4444 0 0 8 6666 0 0 8 44 8 000 66 44 0 0000 88 0 0 88 8 888888888888888888888888888888888 7 7 7 000 99 66 1111111 99 7 3 5 7 7 7 22 0 8 6666666666 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATA-ATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAA----------------GA-A-------------ATCAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATATATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAA----------------GA---------------ATCAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG----TTAAAA-GGCCGTATTTTATTCATG-ATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTAT-----------C-ACAAGGATGGTGATTTCTATA----------CATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT---AAA-----CA-A---T-TGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGAC-AAAATAAG--T-ATTG-------AT--TAA-A-A--ACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATCCCAGATTCCT-AGGGATCTGTTTTA-AAAAGT--A-AAAAAA-GGGT-------------------CAGTTTCCTGTA---ATTGAGTCGATTT-TTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATG--GGTTTTAGTATATTTG-A--TGATATTGTAAAA----------------AAGAA------------ATGAACAGCA-TTAACATAAAGT-GCAT---AATCT--TTGTTGTTGTT-GGTA-T-----TTTCTTATGCGTCT-ACCAGTTTCTACACAGAAA-CAGTGGGCCACTTACTT--CTGAGTTATCAAATTTAATGGTA---AAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACAT--AAAAGACCAT---TTAT-CATA-ATAAGCCAC-GAGCTA-CA-AA---CACACAAAAT-GTAT-----------C-A------------------------------CATG-GAAGTCTTC------------------TATA---CA-----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT-GAAA-----CACA--G--TGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|14 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttccaAA----------------GA---------------CTCAAGAGCA-TTG-CAAAAAGT-GCAT---AATCT--TTGTTGTCGG--GG-----------------G--TCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|15 : tatatacagacagacataattcatcatcAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCT--TTGTTGTTTG--GGTA-A-----TTTCTTATG--TCT-ACCAGTTTCTa
gi|2 : A-TGCG----TTAAAAAG-CCGTATT--AT-CAAATAT--GCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATC-A-------------------AATCTCCTATACATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCA-AAAACTAG--T-AT-G--GA-T-AC------A-A--ACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCAAT-TTCCA-ATTC-TCAGTGAT-TGTTT-ATAAA-GTTTG-CAAAAAAGGGT-------------------CA---TTCT-------T-GG-T-GATTTAT--GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCATGTAG-TTT--ATAT-TTTGTAA-TGATATTGTAAAA----------------GAAATAAAATTCCCTCTATCAACAGCATTTA-CATAAAGTCGCATTAGAATCTTATTTTTGTTGGATGGTATT-----TTTCGCAGG--CGTGACCAGT---CACGCAGAAAACATTGA-CCAC-TG-TCGACTAAG-----AAATTT-ATA-TGCCCGAATTTGAC--GGTGCA-CACGGAACATTTT-ACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG----CTAAAAAGGCTGTATTTT-------TAT--GCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTAT-----------C-A------------------------------CATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-GT--TGTTA-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCATA-TCCCA-ATTC-T-AGTGAT-TATTTTATAAAAAT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAA---------------------------------ATCAACAGCA-TTA-CATAAAGT-GCAT---CATCT--TTGTTGTTGT--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAA---------------ATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTTAAAA-----CA-A--GT-TGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAATAAC-AA-----------------------------------CA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTATA-TCCTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT--GGCAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-A--TT-T--GAAAC-TGAA-CGAG--ATA---GT-ACCAGTATC-AACGATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAAAGAAATGAAATTCGTCGATAG------------ATCAACAGCA-TTT-CTTAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTTCTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TA---AAATTTATC--GG-GCAACACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtTTGAAAA-TGTG------------GTCGAATTTTAT-CATA-AGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCAT-----------CTAT------------------A----------TATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTT---------------------CA-TCTCGG--------GTG--------GGCTAAAAC--A--T-TTTG--GC-TCAC--T---A-ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTATT-TCTCA-ATTC-T-AGTGAG-TGT-----AAAAGT--G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATAT-GGGT-GATCT----GAGAC-TGAA-CGAGGAATA---GT------TATTTAAC-ATG--T-TTTTTTTTTTTTTT-AAGTG-TATTCCTAAA----------------GAAATGAAATTCATC--ATCAACAGCA-TTA-CAAAGAGT-ACAT---AATCT--TTGTTGCTGG--GGTA-TTTTAATTTCTGATG--TCT-ACCGGTTTCT--------AGTAGTGG-TCATTTG-TT--TTGAATTAT-AAATTTAAGA-TG---AGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATTTTAT-CATA-ATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCAT-------------A-------------------A----------CATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT-AATG-----CA-A--TT-TTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGAC-AAGGCTATATT-ATTG--AAGT-A-------ACA--ACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AAAA-----CA-A--GT-GTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC----ACTAG--TCATTGGTGA-T-ATCCT---C-A--ACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a-TGC-----TTGACAAGGTCGTATTTTAT-CATAtgagtatgttaacat
gi|9 : tg----------CATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT-AAAA-----CA-G--TT-TTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-agtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgagggctgtagaatagataatagttcaaacgatattttaaaacagtttttgttatgtatcactttatgcaattctgataccttataataactttatccaaatatgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|12 ): TACTAACAAATGTGTGCACCGACGCAAACTGTTTATTTCTCCAATTTTATTGATTATTTTTTAAAAGCGTAAACAACCTAATAAACTCCAAGTGTTGGAGTTAAGTGTATAATGAAGTTACTTAAACGGGTGATTTGAGACTGAATGACAAAGATGATTTTATAAGTT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 11111111111111111111111111111111111111111111 55555555555555555555555 1111111111 111 1111111 11 11111 11111 222222222222 1111 33333333333333 11111 111 111 111 2222 1111111 66666666666666666666 1 111111111 11 111 111 1111 6666666666666666666 2222 2222 111 1 1111 2222222222222222222222222222222222222 111 11 1111111 1 2222222222 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 77 11111111 3 1 5 1 7 99 6 6 6 6 88888888888888888888888888888888888888888888 5 33333333333333333333333 5555555555 000 5 8888888 5 55 5 4 11111 4 00000 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 8 9999 2 5 5 0 77 0000 1 5 3 0000000 1 00000000000000000000 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 444 6 6 000 8 8 8 1 8 0 777 0 2222 8 2222222222222222222 3 9999 8 8 0 9999 8 8 0 66 0 444 3 11 6 4444 11 6 8 88 0 2222222222222222222222222222222222222 6 6 5 000 77 33 8888888 77 5 3 2 5 6 6 99 8 0 2222222222 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ........ . . . . . .. . . . . ............................................ . ....................... .......... ... . ....... . .. . . ..... . ..... . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . .. ... . . . . . . ... . . ... . . .. . .... . . . . .. .... . . . ....... . .................... . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . ... . . . . . . ... . .... . ................... . .... . . . .... . . . .. . ... . .. . .... .. . . .. . ..................................... . . . ... .. .. ....... .. . . . . . . .. . . .......... .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 55 55555555 2 0 7 4 8 88 7 7 7 7 33333333333333333333333333333333333333333333 7 77777777777777777777777 4444444444 000 7 6666666 0 11 0 4 11111 4 99999 1 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 1 4444 9 7 7 7 11 0000 4 7 6 4444444 4 11111111111111111111 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 888 7 7 888 0 0 0 0 0 8 000 8 2222 0 0000000000000000000 8 4444 0 0 8 6666 0 0 8 44 8 000 8 44 0 0000 88 0 0 88 8 9999999999999999999999999999999999999 7 7 7 000 99 66 1111111 99 7 3 5 7 7 7 22 0 8 6666666666 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAAA-----GAA--------------AT------------CAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAA------GAA--------------AT------------CAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG----TTAAAA-GGCCGTATTTTATTCATGATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTAT-----------C-ACAAGGATGGTGATTTCTATA----------CATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT---AAA-----CA-A---T-TGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGAC-AAAATAAG--T-ATTG-------AT--TAA-A-A--ACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATCCCAGATTCCT-AGGGATCTGTTTTA-AAAAGT--A-AAAAAA-GGGT-------------------CAGTTTCCTGTA---ATTGAGTCGATTT-TTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATG--GGTTTTAGTATATTTG-A--TGATATTGTAAAAAA----GAA--------------AT------------GAACAGCA-TTAACATAAAGT-GCAT---AATCT--TTGTTGTTGTT-GGTA-T-----TTTCTTATGCGTCT-ACCAGTTTCTACACAGAAA-CAGTGGGCCACTTACTT--CTGAGTTATCAAATTTAATGGTA---AAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACAT--AAAAGACCAT---TTAT-CATAATAAGCCAC-GAGCTA-CA-AA---CACACAAAA-TGTAT-----------C---------------------A----------CATG-GAAGTCTTC------------------TATA----CA----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT-GAAA-----CACA--G--TGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|14 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttccaT------------CAAGAGCA-TTG-CAAAAAGT-GCAT---AATCT--TTGTTGTCGG--GG-----------------G--TCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|15 : tatatacagacagacataattcatcatcaagacAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCT--TTGTTGTTTG--GGTA-A-----TTTCTTATG--TCT-ACCAGTTTCTa
gi|2 : A-TGCG----TTAAAAAG-CCGTATT--AT-CA-AATATGCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATC-A-------------------AATCTCCTATACATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCA-AAAACTAG--T-AT-G--GA-T-AC------A-A--ACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCAAT-TTCCA-ATTC-TCAGTGAT-TGTTT-ATAAA-GTTTG-CAAAAAAGGGT-------------------CA---TTCT-------T-GG-T-GATTTAT--GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCATGTAG-TTT--ATAT-TTTGTAA-TGATATTGTAAAA------GAAATAAAATTCCCTCTAT------------CAACAGCATTTA-CATAAAGTCGCATTAGAATCTTATTTTTGTTGGATGGTATT-----TTTCGCAGG--CGTGACCAGT---CACGCAGAAAACATTGA-CCAC-TG-TCGACTAAG-----AAATTT-ATA-TGCCCGAATTTGAC--GGTGCA-CACGGAACATTTT-ACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG----CTAAAAAGGCTGTATTTT--------TATGCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTAT-----------C-A------------------------------CATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-GT--TGTTA-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCATA-TCCCA-ATTC-T-AGTGAT-TATTTTATAAAAAT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAA-----------------------AT------------CAACAGCA-TTA-CATAAAGT-GCAT---CATCT--TTGTTGTTGT--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAA---------------ATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTTAAAA-----CA-A--GT-TGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAATAAC-AA-----------------------------------CA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTATA-TCCTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT--GGCAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-A--TT-T--GAAAC-TGAA-CGAG--ATA---GT-ACCAGTATC-AACGATG--G-TTTTAGTATATTTG-AA-TGATATTGTAAAAAGAAATGAA--------------ATTCGTCGATAGATCAACAGCA-TTT-CTTAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTTCTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TA---AAATTTATC--GG-GCAACACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtTTGAAAA-TGTG------------GTCGAATTTTAT-CATAAGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCAT-----------CTAT------------------A----------TATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTT---------------------CA-TCTCGG--------GTG--------GGCTAAAAC--A--T-TTTG--GC-TCAC--T---A-ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTATT-TCTCA-ATTC-T-AGTGAG-TGT-----AAAAGT--G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATAT-GGGT-GATCT----GAGAC-TGAA-CGAGGAATA---GTTA------TTTAAC-ATG--T-TTTTTTTTTTTTTT-AAGTG-TATTCCTAAA------GAA--------------ATGAAATTCATCATCAACAGCA-TTA-CAAAGAGT-ACAT---AATCT--TTGTTGCTGG--GGTA-TTTTAATTTCTGATG--TCT-ACCGGTTTCT--------AGTAGTGG-TCATTTG-TT--TTGAATTAT-AAATTTAAGA-TG---AGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCAT-------------A-------------------A----------CATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT-AATG-----CA-A--TT-TTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGAC-AAGGCTATATT-ATTG--AAGT-A-------ACA--ACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AAAA-----CA-A--GT-GTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC----ACTAG--TCATTGGTGA-T-ATCCT---C-A--ACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a-TGC-----TTGACAAGGTCGTATTTTAT-CATAAtgagtatgttaacat
gi|9 : tg----------CATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT-AAAA-----CA-G--TT-TTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-gtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgagggctgtagaatagataatagttcaaacgatattttaaaacagtttttgttatgtatcactttatgcaattctgataccttataataactttatccaaatatgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|12 ): TACTAACAAATGTGTGCACCGACGCAAACTGTTTATTTCTCCAATTTTATTGATTATTTTTTAAAAGCGTAAACAACCTAATAAACTCCAAGTGTTGGAGTTAAGTGTATAATGAAGTTACTTAAACGGGTGATTTGAGACTGAATGACAAAGATGATTTTATAAGTT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 11111111111111111111111111111111111111111111 55555555555555555555555 1111111111 111 1111111 11 11111 11111 222222222222 1111 33333333333333 11111 111 111 111 2222 1111111 66666666666666666666 1 111111111 11 111 111 1111 6666666666666666666 2222 2222 111 1 1111 11111111111111111111111111111111111111 111 111 11 11111 1 2222222222 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 77 11111111 3 1 5 1 7 99 6 6 6 6 88888888888888888888888888888888888888888888 5 33333333333333333333333 5555555555 000 5 8888888 5 55 5 4 11111 4 00000 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 8 9999 2 5 5 0 77 0000 1 5 3 0000000 1 00000000000000000000 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 444 6 6 000 8 8 8 1 8 0 777 0 2222 8 2222222222222222222 3 9999 8 8 0 9999 8 8 0 66 0 444 3 11 6 4444 11 6 8 88 0 8 55555555555555555555555555555555555555 111 5 000 77 33 44444 5 77 5 3 2 5 6 6 99 8 0 2222222222 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ........ . . . . . .. . . . . ............................................ . ....................... .......... ... . ....... . .. . . ..... . ..... . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . .. ... . . . . . . ... . . ... . . .. . .... . . . . .. .... . . . ....... . .................... . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . ... . . . . . . ... . .... . ................... . .... . . . .... . . . .. . ... . .. . .... .. . . .. . . ...................................... ... . ... .. .. ..... . .. . . . . . . .. . . .......... .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 55 55555555 2 0 7 4 8 88 7 7 7 7 33333333333333333333333333333333333333333333 7 77777777777777777777777 4444444444 000 7 6666666 0 11 0 4 11111 4 99999 1 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 1 4444 9 7 7 7 11 0000 4 7 6 4444444 4 11111111111111111111 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 888 7 7 888 0 0 0 0 0 8 000 8 2222 0 0000000000000000000 8 4444 0 0 8 6666 0 0 8 44 8 000 8 44 0 0000 88 0 0 88 8 0 99999999999999999999999999999999999999 222 7 000 99 66 33333 7 99 7 3 5 7 7 7 22 0 8 6666666666 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAAAA--GAA-------------AT-----------------CAACAGCATT-A-CATAAAGT-GCAT---AATCTT--TGTTGTTGG--GGTAT-----TTT-CTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-AT--T---A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAAA---GAA-------------AT-----------------CAACAGCATT-A-CATAAAGT-GCAT---AATCTT--TGTTGTTGG--GGTAT-----TTT-CTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TG---AAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG----TTAAAA-GGCCGTATTTTATTCATGATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTAT-----------C-ACAAGGATGGTGATTTCTATA----------CATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT---AAA-----CA-A---T-TGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGAC-AAAATAAG--T-ATTG-------AT--TAA-A-A--ACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATCCCAGATTCCT-AGGGATCTGTTTTA-AAAAGT--A-AAAAAA-GGGT-------------------CAGTTTCCTGTA---ATTGAGTCGATTT-TTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATG--GGTTTTAGTATATTTG-A--TGATATTG-TAAAAAA--GAA-------------AT-----------------GAACAGCATT-AACATAAAGT-GCAT---AATCTT--TGTTGTTGTT-GGTAT-----TTT-CTTATGCGTCT-ACCAGTTTCTACACAGAAA-CAGTGGGCCACTTACTT--CTGAGTTATCAAATTTAATGGTA---AAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACAT--AAAAGACCAT---TTAT-CATAATAAGCCAC-GAGCTA-CA-AA---CACACAAAA-TGTAT-----------C---------------------A----------CATG-GAAGTCTTC------------------TATA----CA----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT-GAAA-----CACA--G--TGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|14 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttccaT-----------------CAAGAGCATT-G-CAAAAAGT-GCAT---AATCTT--TGTTGTCGG--GG-----------------G--TCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|15 : tatatacagacagacataattcatcatcaagacAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCTT--TGTTGTTTG--GGTAA-----TTT-CTTATG--TCT-ACCAGTTTCTa
gi|2 : A-TGCG----TTAAAAAG-CCGTATT--AT-CA-AATATGCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATC-A-------------------AATCTCCTATACATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCA-AAAACTAG--T-AT-G--GA-T-AC------A-A--ACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCAAT-TTCCA-ATTC-TCAGTGAT-TGTTT-ATAAA-GTTTG-CAAAAAAGGGT-------------------CA---TTCT-------T-GG-T-GATTTAT--GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCATGTAG-TTT--ATAT-TTTGTAA-TGATATTG-TAAAAG---AAATAAAATTCCCTCTAT-----------------CAACAGCATTTA-CATAAAGTCGCATTAGAATCTTATTTTTGTTGGATGGTAT-----TTTTCGCAGG--CGTGACCAGTC---ACGCAGAAAACATTGA-CCAC-TG-TCGACTAAG-----AAATTT-ATA-TGCCCGAATTTGAC--GGTGCA-CACGGAACATTTT-ACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG----CTAAAAAGGCTGTATTTT--------TATGCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTAT-----------C-A------------------------------CATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA-T-GT--TGTTA-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCATA-TCCCA-ATTC-T-AGTGAT-TATTTTATAAAAAT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAAA--------------------T-----------------CAACAGCATT-A-CATAAAGT-GCAT---CATCTT--TGTTGTTGT--GGTAT-----TTT-CTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAA---------------ATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTTAAAA-----CA-A--GT-TGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAATAAC-AA-----------------------------------CA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTATA-TCCTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT--GGCAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-A--TT-T--GAAAC-TGAA-CGAG--ATA---GT-ACCAGTATC-AACGATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAAA---GAA-------------ATGAAATTCGTCGATAGATCAACAGCATT-T-CTTAAAGT-GCAT---AATCTT--TGTTGTTGG--GGTAT-----TTT-TCTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTAATG-TA---AAATTTATC--GG-GCAACACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtTTGAAAA-TGTG------------GTCGAATTTTAT-CATAAGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCAT-----------CTAT------------------A----------TATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTT---------------------CA-TCTCGG--------GTG--------GGCTAAAAC--A--T-TTTG--GC-TCAC--T---A-ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTATT-TCTCA-ATTC-T-AGTGAG-TGT-----AAAAGT--G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATAT-GGGT-GATCT----GAGAC-TGAA-CGAGGAATA---GTTA------TTTAAC-ATG--T-TTTTTTTTTTTTTT-AAGTG-TATTCCTAAAGAAATGAA-------------ATTCATCAT----------CAACAGCATT-A-CAAAGAGT-ACAT---AATCTT--TGTTGCTGG--GGTATTTTAATTT-CTGATG--TCT-ACCGGTTTCT--------AGTAGTGG-TCATTTG-TT--TTGAATTAT-AAATTTAAGA-TG---AGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCAT-------------A-------------------A----------CATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT-AATG-----CA-A--TT-TTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGAC-AAGGCTATATT-ATTG--AAGT-A-------ACA--ACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AAAA-----CA-A--GT-GTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC----ACTAG--TCATTGGTGA-T-ATCCT---C-A--ACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a-TGC-----TTGACAAGGTCGTATTTTAT-CATAAtgagtatgttaacat
gi|9 : tg----------CATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT-AAAA-----CA-G--TT-TTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-gtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgagggctgtagaatagataatagttcaaacgatattttaaaacagtttttgttatgtatcactttatgcaattctgataccttataataactttatccaaatatgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|12 ): TACTAACAAATGTGTGCACCGACGCAAACTGTTTATTTCTCCAATTTTATTGATTATTTTTTAAAAGCGTAAACAACCTAATAAACTCCAAGTGTTGGAGTTAAGTGTATAATGAAGTTACTTAAACGGGTGATTTGAGACTGAATGACAAAGATGATTTTATAAGTT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 11111111111111111111111111111111111111111111 55555555555555555555555 1111111111 111 1111111 11 11111 11111 222222222222 1111 33333333333333 11111 111 111 111 2222 1111111 666666666666666666666 1 111111111 11 111 111 1111 6666666666666666666 2222 2222 111 1 11 00000000000000000000000000000000000000000000 1 111 1111 11111 1 2222222222 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 77 11111111 3 1 5 1 7 99 6 6 6 6 88888888888888888888888888888888888888888888 5 33333333333333333333333 5555555555 000 5 8888888 5 55 5 4 11111 4 00000 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 8 9999 2 5 5 0 77 0000 1 5 3 0000000 1 000000000000000000000 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 444 6 6 000 8 8 8 1 8 0 777 0 2222 8 2222222222222222222 3 9999 8 8 0 9999 8 8 0 66 0 444 3 11 6 8 11 11 6 88 8 0 8 22222222222222222222222222222222222222222222 3 5 000 77 0000 44444 5 77 5 3 99 6 6 99 8 0 2222222222 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ........ . . . . . .. . . . . ............................................ . ....................... .......... ... . ....... . .. . . ..... . ..... . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . .. ... . . . . . . ... . . ... . . .. . .... . . . . .. .... . . . ....... . ..................... . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . ... . . . . . . ... . .... . ................... . .... . . . .... . . . .. . ... . .. . . .. .. . .. . . . ............................................ . . ... .. .... ..... . .. . . .. . . .. . . .......... .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 55 55555555 2 0 7 4 8 88 7 7 7 7 33333333333333333333333333333333333333333333 7 77777777777777777777777 4444444444 000 7 6666666 0 11 0 4 11111 4 99999 1 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 1 4444 9 7 7 7 11 0000 4 7 6 4444444 4 111111111111111111111 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 888 7 7 888 0 0 0 0 0 8 000 8 2222 0 0000000000000000000 8 4444 0 0 8 6666 0 0 8 44 8 000 8 44 0 0 00 88 0 88 0 8 0 22222222222222222222222222222222222222222222 3 7 000 99 7777 33333 7 99 7 3 77 7 7 22 0 8 6666666666 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA---T-AT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AA--GAA----------------A----------T-------CAACAGCATT-ACATAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTG---AAATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA---T-AT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AA--GAA----------------A----------T-------CAACAGCATT-ACATAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTG---AAATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG----TTAAAA-GGCCGTATTTTATTCATGATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTAT-----------C-ACAAGGATGGTGATTTCTATA----------CATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT---AAA-----CA-A---T-TGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGAC-AAAATAAG--T-ATTG---------AT--TAAA-A--ACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATCCCAGATTCCT-AGGGATCTGTTTTA-AAAAGT--A-AAAAAA-GGGT-------------------CAGTTTCCTGTA---ATTGAGTCGATTT-TTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATGG--GTTTTAGTATATTTG--A-TGATATTG-TAAAA--AA--GAA----------------A----------T-------GAACAGCATTAACATAAAGT-GCAT---AATCTT--TGTTGTTGTT--GGTAT-----TTT-CTTATGCGTCT-ACCAGTTTCTACACAG-AAACAGTGGGCCACTTACTT--CTGAGTTATCAAATTTAATGGTA---AAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACAT--AAAAGACCAT---TTAT-CATAATAAGCCAC-GAGCTA-CA-AA---CACACAAAA-TGTAT-----------C---------------------A----------CATG-GAAGTCTTC------------------TATA----CA----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT-GAAA-----CACA--G--TGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|14 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttcca----------T-------CAAGAGCATT-GCAAAAAGT-GCAT---AATCTT--TGTTGTCG-G--GG-------------------GTCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|15 : tatatacagacagacataattcatcatcaagacAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCTT--TGTTGTTT-G--GGTAA-----TTT-CTTAT--GTCT-ACCAGTTTCTa
gi|2 : A-TGCG----TTAAAAAG-CCGTATT--AT-CA-AATATGCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATC-A-------------------AATCTCCTATACATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCA-AAAACTAG--T-AT-G--GA---T-AC-----A-A--ACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCAAT-TTCCA-ATTC-TCAGTGAT-TGTTT-ATAAA-GTTTG-CAAAAAAGGGT-------------------CA---TTCT-------T-GG-T-GATTTAT--GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCAT-GTAGTTT--ATAT-TTTGTAA-TGATATTG-TAAAAGAAA--TAA----------------AATTCCCTCTAT-------CAACAGCATTTACATAAAGTCGCATTAGAATCTTATTTTTGTTG-GATGGTAT-----TTTTCGCAG--GCGTGACCAGTC---ACGCAGAAAACATT-GACCAC-TG-TCGACTAAG-----AAATTT-AT-ATGCCCGAATTTGAC--GGTGCA-CACGGAACATTT-TACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG----CTAAAAAGGCTGTATTTT--------TATGCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTAT-----------C-A------------------------------CATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GATGTT-GT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCATA-TCCCA-ATTC-T-AGTGAT-TATTTTATAAAAAT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--A---------------------------------T-------CAACAGCATT-ACATAAAGT-GCAT---CATCTT--TGTTGTTG-T--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAA---------------ATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTTAAAA-----CA-A--GT-TGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAATAAC-AA------------------------------------CA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTATA-TCCTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT--GGCAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-A--TT-T--GAAAC-TGAA-CGAG--ATA---GT-ACCAGTATC-AACGAT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AG--AAATGAAATTCGTCGATAGA----------T-------CAACAGCATT-TCTTAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-TCTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTA---AAATTTATC--GG-GCAACACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtTTGAAAA-TGTG------------GTCGAATTTTAT-CATAAGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCAT-----------CTAT------------------A----------TATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTT---------------------CA-TCTCGG--------GTG--------GGCTAAAAC--A--T-TTTG--GC---TCAC--T--A-ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTATT-TCTCA-ATTC-T-AGTGAG-TGT-----AAAAGT--G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATAT-GGGT-GATCT----GAGAC-TGAA-CGAGGAATA---GTTA------TTTAAC-AT-G--TTTTTTTTTTTTTTT-AAGTG-TATTCCTAAAG--AAATGAA----------------A----------TTCATCATCAACAGCATT-ACAAAGAGT-ACAT---AATCTT--TGTTGCTG-G--GGTATTTTAATTT-CTGAT--GTCT-ACCGGTTTCT--------AGTAGT-GGTCATTTG-TT--TTGAATTAT-AAATTTAAG-ATG---AGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCAT-------------A-------------------A----------CATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT-AATG-----CA-A--TT-TTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGAC-AAGGCTATATT-ATTG--AAG--T-A------ACA--ACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AAAA-----CA-A--GT-GTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC----ACTAG--TCATTGGTGA---T-ATCCT--C-A--ACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a-TGC-----TTGACAAGGTCGTATTTTAT-CATAAtgagtatgttaacat
gi|9 : tg----------CATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT-AAAA-----CA-G--TT-TTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-gtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgagggctgtagaatagataatagttcaaacgatattttaaaacagtttttgttatgtatcactttatgcaattctgataccttataataactttatccaaatatgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|12 ): TACTAACAAATGTGTGCACCGACGCAAACTGTTTATTTCTCCAATTTTATTGATTATTTTTTAAAAGCGTAAACAACCTAATAAACTCCAAGTGTTGGAGTTAAGTGTATAATGAAGTTACTTAAACGGGTGATTTGAGACTGAATGACAAAGATGATTTTATAAGTT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 11111111111111111111111111111111111111111111 55555555555555555555555 1111111111 111 1111111 11 11111 11111 222222222222 1111 33333333333333 11111 111 111 111 2222 1111111 666666666666666666666 1 111111111 11 111 111 1111 6666666666666666666 2222 2222 111 1 11 00000000000000000000000000000000000000000000 1 111 1111 11111 1 2222222222 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 77 11111111 3 1 5 1 7 99 6 6 6 6 88888888888888888888888888888888888888888888 5 33333333333333333333333 5555555555 000 5 8888888 5 55 5 4 11111 4 00000 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 8 9999 2 5 5 0 77 0000 1 5 3 0000000 1 000000000000000000000 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 444 6 6 000 8 8 8 1 8 0 777 0 2222 8 2222222222222222222 3 9999 8 8 0 9999 8 8 0 66 0 444 3 11 6 8 11 11 6 88 8 0 8 22222222222222222222222222222222222222222222 3 5 000 77 0000 44444 5 77 5 3 99 6 6 99 8 0 2222222222 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ........ . . . . . .. . . . . ............................................ . ....................... .......... ... . ....... . .. . . ..... . ..... . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . .. ... . . . . . . ... . . ... . . .. . .... . . . . .. .... . . . ....... . ..................... . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . ... . . . . . . ... . .... . ................... . .... . . . .... . . . .. . ... . .. . . .. .. . .. . . . ............................................ . . ... .. .... ..... . .. . . .. . . .. . . .......... .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 55 55555555 2 0 7 4 8 88 7 7 7 7 33333333333333333333333333333333333333333333 7 77777777777777777777777 4444444444 000 7 6666666 0 11 0 4 11111 4 99999 1 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 1 4444 9 7 7 7 11 0000 4 7 6 4444444 4 111111111111111111111 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 888 7 7 888 0 0 0 0 0 8 000 8 2222 0 0000000000000000000 8 4444 0 0 8 6666 0 0 8 44 8 000 8 44 0 0 00 88 0 88 0 8 0 22222222222222222222222222222222222222222222 3 7 000 99 7777 33333 7 99 7 3 77 7 7 22 0 8 6666666666 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA---T-AT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AA--GAA----------------A----------T-------CAACAGCATT-ACATAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTG---AAATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA---T-AT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AA--GAA----------------A----------T-------CAACAGCATT-ACATAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTG---AAATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG----TTAAAA-GGCCGTATTTTATTCATGATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTAT-----------C-ACAAGGATGGTGATTTCTATA----------CATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT---AAA-----CA-A---T-TGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGAC-AAAATAAG--T-ATTG---------AT--TAAA-A--ACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATCCCAGATTCCT-AGGGATCTGTTTTA-AAAAGT--A-AAAAAA-GGGT-------------------CAGTTTCCTGTA---ATTGAGTCGATTT-TTTGAAACCTGAA-CG-GGGATAAAGGCTACCAGTATCTAAC-ATGG--GTTTTAGTATATTTG--A-TGATATTG-TAAAA--AA--GAA----------------A----------T-------GAACAGCATTAACATAAAGT-GCAT---AATCTT--TGTTGTTGTT--GGTAT-----TTT-CTTATGCGTCT-ACCAGTTTCTACACAG-AAACAGTGGGCCACTTACTT--CTGAGTTATCAAATTTAATGGTA---AAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACAT--AAAAGACCAT---TTAT-CATAATAAGCCAC-GAGCTA-CA-AA---CACACAAAA-TGTAT-----------C---------------------A----------CATG-GAAGTCTTC------------------TATA----CA----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT-GAAA-----CACA--G--TGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|14 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttcca----------T-------CAAGAGCATT-GCAAAAAGT-GCAT---AATCTT--TGTTGTCG-G--GG-------------------GTCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|15 : tatatacagacagacataattcatcatcaagacAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCTT--TGTTGTTT-G--GGTAA-----TTT-CTTAT--GTCT-ACCAGTTTCTa
gi|2 : A-TGCG----TTAAAAAG-CCGTATT--AT-CA-AATATGCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATC-A-------------------AATCTCCTATACATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTT-TAAATTAACCA-ACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCA-AAAACTAG--T-AT-G--GA---T-AC-----A-A--ACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCAAT-TTCCA-ATTC-TCAGTGAT-TGTTT-ATAAA-GTTTG-CAAAAAAGGGT-------------------CA---TTCT-------T-GG-T-GATTTAT--GAAAC-TGAAACGAGATA-A---GTCTCCAGTATTTCCCCAT-GTAGTTT--ATAT-TTTGTAA-TGATATTG-TAAAAGAAA--TAA----------------AATTCCCTCTAT-------CAACAGCATTTACATAAAGTCGCATTAGAATCTTATTTTTGTTG-GATGGTAT-----TTTTCGCAG--GCGTGACCAGTC---ACGCAGAAAACATT-GACCAC-TG-TCGACTAAG-----AAATTT-AT-ATGCCCGAATTTGAC--GGTGCA-CACGGAACATTT-TACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG----CTAAAAAGGCTGTATTTT--------TATGCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTAT-----------C-A------------------------------CATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GATGTT-GT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCATA-TCCCA-ATTC-T-AGTGAT-TATTTTATAAAAAT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGGTA---GTTACCAGTATCTCAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--A---------------------------------T-------CAACAGCATT-ACATAAAGT-GCAT---CATCTT--TGTTGTTG-T--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAA---------------ATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTTAAAA-----CA-A--GT-TGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAATAAC-AA------------------------------------CA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTATA-TCCTT-ATTC-T-AGAGGT-TGTTTTATAAAAGT--GGCAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-A--TT-T--GAAAC-TGAA-CGAG--ATA---GT-ACCAGTATC-AACGAT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AG--AAATGAAATTCGTCGATAGA----------T-------CAACAGCATT-TCTTAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-TCTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTA---AAATTTATC--GG-GCAACACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtTTGAAAA-TGTG------------GTCGAATTTTAT-CATAAGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCAT-----------CTAT------------------A----------TATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT-AAAA-----CA-A--TT-TGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTT---------------------CA-TCTCGG--------GTG--------GGCTAAAAC--A--T-TTTG--GC---TCAC--T--A-ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTATT-TCTCA-ATTC-T-AGTGAG-TGT-----AAAAGT--G-CAAAAA-GGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATAT-GGGT-GATCT----GAGAC-TGAA-CGAGGAATA---GTTA------TTTAAC-AT-G--TTTTTTTTTTTTTTT-AAGTG-TATTCCTAAAG--AAATGAA----------------A----------TTCATCATCAACAGCATT-ACAAAGAGT-ACAT---AATCTT--TGTTGCTG-G--GGTATTTTAATTT-CTGAT--GTCT-ACCGGTTTCT--------AGTAGT-GGTCATTTG-TT--TTGAATTAT-AAATTTAAG-ATG---AGATTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCAT-------------A-------------------A----------CATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT-AATG-----CA-A--TT-TTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGAC-AAGGCTATATT-ATTG--AAG--T-A------ACA--ACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT-AAAA-----CA-A--GT-GTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC----ACTAG--TCATTGGTGA---T-ATCCT--C-A--ACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a-TGC-----TTGACAAGGTCGTATTTTAT-CATAAtgagtatgttaacat
gi|9 : tg----------CATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT-AAAA-----CA-G--TT-TTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-gtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgagggctgtagaatagataatagttcaaacgatattttaaaacagtttttgttatgtatcactttatgcaattctgataccttataataactttatccaaatatgt
blockSeqs : A AAACAT A A . T A AT A A T . TCAACATGAATCAAATCTCCTATA T CCTTTCTATACATGAGTAA ACAGAAATAG TTT A ACAGAAA A AC T T TTAAC C CAGTC G A ATA A . A . AT A TC T A C G GCC AAAGGTCAAC GA CG A AAA C GGTTATTGCTATTA TTGAA C G GC CCT T A G . A A . A A TAG . G . C CGG T T . AC ATAC A T A TATATT T GTGATATCCTCA C G . . G T A . G C AC C GG TAG T . G CT A C . A . CCTACATTG . TTG ATG AC T CC TTT C A AT . . C T . TAT TTG A TACGTTAGTCGTATATAAT A TATA . . AT . A AT . C TC C . TA TA A TA G C AGAAATGAAATTCGTCGATAGAT T C TAG AT GAT TTTAA T . G G GA . . GA . ATATGCCC . T A A . TGATTT A G ACT ATG T ATGCGTCCAGAAATCCGTGTTCCAGATCCTTTCCATTTTCACCA T . G CA . .
blockSeqs : A GTTA A G . T T C . . . . CTATA . TCTTC GAT . . . . AA . . . . GT C . . . . . . . . . . . . . A TGA . T . CA . CT . . G . . T . . . N N . . . . . . . T NNN N . . A . A . A TAGTC T GATGTTGTTAA . G . . . . A . . . . T A . . . . . . . . . . CC . . TG T T G T . . TA . . . T . TAT GG . . A . . . T . . GG . T TC G . . TA A A . . GAAATAAAATTCCCTCTAT . . . . G . . . . . GA . . . . AATGTA . . . T . . A . . TA . ATGCTCCAGAAACCGAGTGGCCAGTCACTTCATTTGCACA . . . . . .
blockSeqs : A GCTA A G . T T A . . . . CA . T GAA . . . . A . . . . GT G . . . . . . . . . . . . . T A . G . A . . . . A . . N . . . T A . . . . . . . N CTG T . . A . A . A TAGT T GCTCACTAACA . A . . . . . . . . . T G . . . . . . . . . . TC . . AA A C G C . . TA . . . A . AT G . . A . . . . . . GA . T TA . . . TT T A . . AAATGAAATTCATCAT . . . . G . . . . . GA . . . . AAGATG . . . T . . . . . TG . ATGCGTGTTCACCA . . . . . .
blockSeqs : . TTG A G . T A A . . . . CA . C GAA . . . . G . . . . TT G . . . . . . . . . . . . . A G . G . A . . . . G . . C . . . T A . . . . . . . C CTC T . . A . A . G TAGT T AAGTAACA . A . . . . . . . . . T A . . . . . . . . . . TC . . AT A T G . . . TT . . . T . . G . . . . . . . . . . . . A . . . . . A . . AT . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : G . . . . A A . . . . AA . C GAA . . . . A . . . . TT G . . . . . . . . . . . . . A A . G . A . . . . . . . . . . . . . . . . . . . . C C . . . A . . . . AT . GATACAA . G . . . . . . . . . T A . . . . . . . . . . CC . . TG G T . . . . . . . . G . . . . . . . . .
blockSeqs : . . . C CA . . . . . . . . . GT T . . . . . . . . . . . . . T A . G . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C G . . . . . . . . . . TC . . TG G . . . . G . . . .
blockSeqs : . . . . . . TT T . . . . . . . . . . . . . T A . A . . . . . . . . . . C . . . . . . . . . . . A . . A .
blockSeqs : . . . G T . . . . . . . . . . . . . T . . . .
blockSeqCons : A* A* CA****************************************** C********************** GAA******* NT*** A*** *** ** CTG* A* **** GAGTAACA************* ** T* C** TN* AT* **** **** *** A* AAATGAAATTCTCAT***************************** G*** ** GA AAGC****** ** TG**
originalCons : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTAT-----------C-A-------------------A----------CATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-A--GT-TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTG--GA---T-AT--T--A-A--ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATT-TCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA---AT-GGGT-GATTT-T--GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-AT-G--GTTTTAGTATATTTG-AA-TGATATTG-TAAAA--AA--GAA----------------A----------T-------CAACAGCATT-ACATAAAGT-GCAT---AATCTT--TGTTGTTG-G--GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAT-GTG---AAATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
finalCons : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTATCA------------------------------------------CATG-AGGGC----------------------TGTAGAA-------TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT-AAAA-----CA-ANT---TGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTTA---A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCTCTG-GTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTGGAGTAACA-------------ACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTAT-TTA-GAGC--TTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCATN-TCCCA-ATTC-T-AGTGAT-TGTTTAT-AAAAGT--G-CAAAAA-GGGT-------------------CAAGTTTCTGTA----T-GGGT-GATTT----GAAAC-TGAA-CGAGGGATA---GTTACCAGTATCTAAC-AT-G--GTTTTAGTATATTTGA-A-TGATATTG-TAAAAAAATGAAATTCTCAT-----------------------------CAACAGCATT-ACATAAAGT-GCAT---AATCTT--TGTTGTTGG---GGTAT-----TTT-CTTAT--GTCT-ACCAGTTTCTAC-CAGAAAACAGT-GGCCACTTG-TT--CTGAGTTAT-AAATTTAAGC------AAATTTATC--GG-GCA-CACGGTAGATGT-GACCG------TTCAACAGTCT-TG---AGCACCTG--ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|12 ): TACTAACAAATGTGTGCACCGACGCAAACTGTTTATTTCTCCAATTTTATTGATTATTTTTTAAAAGCGTAAACAACCTAATAAACTCCAAGTGTTGGAGTTAAGTGTATAATGAAGTTACTTAAACGGGTGATTTGAGACTGAATGACAAAGATGATTTTATAAGTT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222 000000000000000000000000000000000000000000000000000000000000000000000000000 1111111111 111 1111111 11 111111 222222222222 1111 33333333333333 11111 111 111 111 4444444444444444444444444444444444444444444444 1 111111111 11 111 1111 11 111 6666666666666666666 11111111 111111 111 1111 11111 55555555555 111 11 1111111 1 555555555555 11 222222 111 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1
lowQualScore : 77 11111111 3 1 5 1 7 99 6 6 6 6 777777777777777777777777777777777777777777777777777777777777777777777777777 5555555555 000 5 8888888 5 55 5 777777 66 5 1 4 777 4 4 4 4 66 4 66 4 8 4 4 777 222222222222 66 44 4 2222 5 66666666666666 22222 5 1 99 111 3 6 6 6 5 9 000 5 5 000 5 5 77 8 9999 2 5 5 0 77 2222222222222222222222222222222222222222222222 5 1 5 5 5 5 1 5 5 5 66 4 77 888 5 5 5 66 5 5 5 5 5 666666666 66 888 777 22 55 99 999 6 6 8 1 8 8 8 1 8 0 8888 11 111 2222222222222222222 3 99999999 8 666666 8 8 555 8 444 3 999 8 4444 11 6 8 88 0 8 8 88888 99999999999 6 6 5 000 77 33 8888888 77 5 3 2 5 6 6 99 8 0 888888888888 11 8 8 6 8 333333 5 8 444 5555 8 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 8 11 8 0
lowQualScore : .. ........ . . . . . .. . . . . ........................................................................... .......... ... . ....... . .. . ...... .. . . . ... . . . . .. . .. . . . . ... ............ .. .. . .... . .............. ..... . . .. ... . . . . . . ... . . ... . . .. . .... . . . . .. .............................................. . . . . . . . . . . .. . .. ... . . . .. . . . . . ......... .. ... ... .. .. .. ... . . . . . . . . . . .... .. ... ................... . ........ . ...... . . ... . ... . ... . .... .. . . .. . . . ..... ........... . . . ... .. .. ....... .. . . . . . . .. . . ............ .. . . . . ...... . . ... .... . .............................................................................................. . . . .. . .
lowQualScore : 55 55555555 2 0 7 4 8 88 7 7 7 7 888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444 000 7 6666666 0 11 0 222222 11 3 1 4 888 4 4 4 4 11 4 11 4 9 4 4 111 000000000000 11 66 4 7777 0 22222222222222 55555 0 0 22 777 3 7 7 7 2 0 000 7 7 000 7 7 99 1 4444 9 7 7 7 11 9999999999999999999999999999999999999999999999 7 7 7 7 7 7 4 0 0 0 99 2 22 888 0 0 0 99 0 0 0 0 0 888888888 99 888 111 44 99 22 777 7 7 0 0 0 0 0 0 0 8 8888 00 000 0000000000000000000 8 88888888 0 000000 0 0 888 0 000 8 444 0 0000 88 0 0 88 8 0 0 00000 88888888888 7 7 7 000 99 66 1111111 99 7 3 5 7 7 7 22 0 8 888888888888 00 0 0 0 0 000000 6 0 000 0000 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0
consensus : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTATC----------------------AC--------------------ATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT------AA--AACAANTTGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTGG---A----G-TA---ACAACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCA-TATCCCA-ATTC-T-AGTGAT-TGTTTTATAAAAG--TG-C-AAAAAGGGT-------------------CAAGTTTCTG----TA--TGGGT-GATT--T---GAAAC-TG-AACGAGGGAT-A---GTTACCAGTATCT-AAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAA-A--AATGAAATTC-TC--T--ATCAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTA-AT-G--TAAAATTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
Reference ( family-2426 ) : GTGCTTGAAAA-TGCG----TTAAAAAGGCCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGTATC----------------------AC--------------------ATG-AGGG----C------------------TGTA---GAA----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTTT------AA--AACAANTTGTC-T---TA-T-G-TA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CN--T--A---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTTATAGACAGACGGAT---AAAA-C-TCA---CT-CG-AG--ATTTCATCT-CTGGTAAACTA-AAACA-TTTTGGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTGG---A----G-TA---ACAACA-ACCTAAGGACAT-TGATT-T-TG-AGC-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TACCA-GGGT---TA-TT-CT-GAA--AG-TA-CA-TAGATTC-A-AAATCTCC-------TAGC--A---AA-GGAAAACG-TGTATGCTTTTA-TTTA-GAG--CTTTACATGTA-ATG-TATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTCA-TNTCCCA-ATTC-T-AGTGAT-TGTTT-ATAAAAG--TG-C-AAAAAGGGT-------------------CAAGTTTCTG----TA--TGGGT-GATT--T---GAAAC-TG-AACGAGGGAT-A---GTTACCAGTATCT-AAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAA-A--AATGAAATTC-TC-----ATCAACAGCA-TTA-CATAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTA-A--G--CAAA-TTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TG-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTATATG-TACA
gi|1 : GTGCTTGAAAAATGCG----TTAAAA-GGCCGTATTTTATTCATGATA-GCCA--G-GCTA-CA-AATATCACACACCATTGTATC----------------------ACAAGGATGGTGATTTCTATACATG-AGGG-----------------------TATA---GA-----TGA---AT-A-------TAG-TTCAAAA-CGAT-ATTT--------A--AACAA-TTGTC-T---TA-TTG-TAATCA--CTAT-AA--GCAATTCT-GAAC-AC-CT--T--A---------T--AAT-GGC-TTT--AGA-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TTTGAAAATTGT-TAA-ACAGTTTATAGAGAG-CGAATTTAAAAA-C-TCA---CTCCG-AGTCATTT--TCTGCTGATAAACTA-AAACATTTTTTGCTC--CCAGAGGA--AAATGAC-AAAATAAG--T-ATT-G---A----T-TA---AAAACA-ACCTAAGGACATGTGATTCT-TT-AGT-CAGAAATTCGCATATTTTA-TAGG-CGATTATCAACGA---A-CA-GG-----TA-TTCCT-GAA--AG-TA-CAGTAGATTC-ATAAATCTTG-------TAGCAAA---AA-GAAAAACA-TGTATGCTTTTACTTTA-GAG--TTTTACATGTA-ATA-TATTTTGA
gi|1 : tTGGACCTTTCAATATCCCAGATTCCT-AGGGATCTGTTT-TAAAAAG--TA-A-AAAAAGGGT-------------------CAGTTTCCTG----TAATTGAGTCGATT--TTTTGAAACCTG-AACG-GGGAT-AAAGGCTACCAGTATCT-AAC-ATG--GGTTTTAGTATATTTG-A--TGATATTG-TAAAA-A--A--GAAATG------------AACAGCA-TTAACATAAAGT-GCAT---AATCT--TTGTTGTTGTT-GGTA-T-----TTTCTTATGCGTCT-ACCAGTTTCTACACAGAAA-CAGTGGGCCACTTACTT--CTGAGTTATCAAATTTA-ATGG--TAAAATTTATTCGGG-GCA-CACGGTAGATGTGGACCG------TTCAACAGTCT-TG---AGCACC-TGTCTTTTC-CTTCTA------------ATGC------------GTCAGAAATCGG---------TTCC------------------AGATCCTTTC-----CATTTCACCG-TGGAAGTTGCTTGCAT-TTTC--AAGACATAGCTCTATATGCTACActtgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgtggacctttcaatatcccagattcctagggatctgttttaaaaagtaaaaaaagggtcagtttcctgtaattgagtcgattttttgaaacctgaacggggataaaggctaccagtatctaacatgggttttagtatatttgatgatattgtaaaaaagaaatgaacagcattaacataaagtgcataatctttgttgttgttggtattttcttatgcgtctaccagtttctacacagaaacagtgggccacttacttctgagttatcaaatttaatggtaaaatttattcggggcacacggtagatgtggaccgttcaacagtcttgagcacctgtcttttccttctaatgcgtcagaaatcggttccagatcctttccatttcaccgtggaagttgcttgcattttcaagacatagctctatatgctacatacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|10 : tgtgcttgaaaaatgcgttaaaaggccgtattttattcatgatagccaggctacaaatatcacacaccattgtatcacaaggatggtgatttctatacatgagggtatagatgaatatagttcaaaacgatatttaaacaattgtcttattgtaatcactataagcaattctgaacaccttataatggctttagaatccaaagatgtggggtgtgattctttgaaaattgttaaacagtttatagagagcgaatttaaaaactcactccgagtcattttctgctgataaactaaaacattttttgctcccagaggaaaatgacaaaataagtattgattaaaaacaacctaaggacatgtgattctttagtcagaaattcgcatattttataggcgattatcaacgaacaggtattcctgaaagtacagtagattcataaatcttgtagcaaaaagaaaaacatgtatgcttttactttagagttttacatgtaatatattttgacttgttaatattgtctagatttcaaaatacctttctttgttataggtcgatttcaaaatccaaaaaaatatcctgtatgcatgagatacaccaatgtgggtaaatacaatacagtatcaaaaacatgtagattacaaaatgtcgcaatacacagtgtactttatttattacaatgaccaggcaattcatcagagatgtcacacccaatgTGCTTGAAA--TGCAAACAT--AAAAGACCAT---TTAT-CATAATAAGCCAC-GAGCTA-CA-AA---CACACAAAA-TGTATC----------------------AC--------------------ATG-GAAGTCTTC------------------TATA----CA----TGA---AG-A-------TAG-TTCAAAACCGAT-A-TTT------GA--AACACAGTGTC-TATATA-T-G-TA-TCA---TATAAA--GCAA-TAT-AA-C-AC-CA--T------------T--AAT--GC-TTTAAA-A-ATCC--------------CAAG-----CTGT-tacaactccttaatcacaatatacaagtcgttacttgataaacaagg
gi|11 : aaatat------------GT---------T---------TT-C------------------ATC------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-ACATACATCTCTATG-TACA
gi|14 : agcacctacttgattatttcgggcgttctaaatgcgtccaaaaataccgtgttcccagaatcctttccaTCAAGAGCA-TTG-CAAAAAGT-GCAT---AATCT--TTGTTGTCGG--GG-----------------G--TCT-GCCTGTTTCCAT-CA-------------TACTTG-TT--CTAAATTtaacatctctttatcacaatataaaccaagtcgtacatgtaaacaagg
gi|15 : tatatacagacagacataattcatcatcaagacAATTCGTA-ATTTTA-TAGG-CAATTATAAACGA--TACCC-AGGT---TA-TT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCCCC-------TGGC--A---AT-GGAAAACT-TGTATATTT
gi|17 : ATAAAGT-GCAT---AATCT--TTGTTGTTTG--GGTA-A-----TTTCTTATG--TCT-ACCAGTTTCTa
gi|2 : A-TGCG----TTAAAAAG-CCGTATT--AT-CA-AATATGCCTATA-GCTAACATAG-ATCA-AC-CCATTGTATTCAACATGAATCAAATCTCCTATAC--------------------ATG-AGAG----T------------------TATA---GAT----TAA---AT-A-------TAGATTCAAAAACTATTATTTTTAAATTAACCAACAGTCTCTC-T---TAAT-A--A-TCGATCTAT-AA--GCATTTCT-GAAC-ACGCT--TTGA---------T--AAA-TGC-TCT--A-A---CC--------------AAAG-----ATGT-GG--TGGG--ATTC---TTTCGAAAATGT-TAA-A-AGTT-ATAGACAA--GGAT---AAAAAC-TCA---CT-CG-AG--ATTTCATCT-C--GTAAAC-A-AAACA-TTTTG-CTCA-CCAGTG----AA-TGCA-AAAACTAG--T-AT-GG---A------TA---CAAACA-ACCTAAG-ACAT--GATT-T-TG-AGC-AAGAAAT-CACA-ATTTTA-TAGG-CGATTATCAACGA--TATCAGGGGT---TA-TG-CT-GAACTAG-TA-CA-TAGA-TC-A-AAATCT-A-------TAG---A---AA-AGAAAACA-TGTATGC-TTTA--TTA-GAG---TTCACA-GTA-ATG-TATTTtaataacaaaaacgca
gi|2 : atgctcttaatatGACTTTTCA-ATTTCCA-ATTC-TCAGTGAT-TGTTT-AT-AAAGTTTG-CAAAAAAGGGT-------------------CA---TTCT-----T-----GGT-GATTTAT---GAAAC-TGAAACGA--GATAA---GTCTCCAGTATTTCCCC-ATGTAG-TTT--ATAT-TTTGTAA-TGATATTG-TAAAAGA--AATAAAATTC-CCTCT--ATCAACAGCATTTA-CATAAAGTCGCATTAGAATCTTATTTTTGTTGGATGGTATT-----TTTCGCAGG--CGTGACCAGT---CACGCAGAAAACATTGA-CCAC-TG-TCGACTAAG-----AAATTTATAT-GCCCGAA-TTTGAC--GGTGCA-CACGGAACATTTT-ACCGTGATTTTTC-ACAGTCTGTGACTAGCACC----ATATCC-TTTCTA------------ATGCTCCAGAAACCGAGT---------GGCCAGTCACTT-C------------------A--------TTTGCACA------CGTT-GAAGGTTCTTGCATGTTGCCAAA-ACATACATCTATgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtgacttttcaatttccaattctcagtgattgtttataaagtttgcaaaaaagggtcattcttggtgatttatgaaactgaaacgagataagtctccagtatttccccatgtagtttatattttgtaatgatattgtaaaagaaataaaattccctctatcaacagcatttacataaagtcgcattagaatcttatttttgttggatggtatttttcgcaggcgtgaccagtcacgcagaaaacattgaccactgtcgactaagaaatttatatgcccgaatttgacggtgcacacggaacattttaccgtgatttttcacagtctgtgactagcaccatatcctttctaatgctccagaaaccgagtggccagtcacttcatttgcacacgttgaaggttcttgcatgttgccaaaacatacatctat
gi|3 : atgctcttaatatatgcgttaaaaagccgtattatcaaatatgcctatagctaacatagatcaacccattgtattcaacatgaatcaaatctcctatacatgagagttatagattaaatatagattcaaaaactattatttttaaattaaccaacagtctctcttaataatcgatctataagcatttctgaacacgctttgataaatgctctaaccaaagatgtggtgggattctttcgaaaatgttaaaagttatagacaaggataaaaactcactcgagatttcatctcgtaaacaaaacattttgctcaccagtgaatgcaaaaactagtatggatacaaacaacctaagacatgattttgagcaagaaatcacaattttataggcgattatcaacgatatcaggggttatgctgaactagtacatagatcaaaatctatagaaaagaaaacatgtatgctttattagagttcacagtaatgtatttgatatgttaatattgttagcttttcaaaacttctttgttataggcattatcaaatccaaaaaatagcacttttgcaagaacaccaatgtgggttggtaaaactaattacaggctaaaacagtacattaccaaattagcaaaaccatttgtattttttatacatatacaggcaatttactacgagagtcacaccaatgtGTGCTTGAAAA-TGCG----CTAAAAAGGCTGTATTTT--------TATGCCAA-G-GCTA-CA-AG-ATCCCACACCATTGTATC----------------------AC--------------------ATG-AGGA----C------------------TATA---GAA----TGA---AT-A-------TAG-TTCAAA--CGAT-ATTTT------AA--AACAAGTTGTC-T---TA-T-G-TA-TCA--CCAT-AA--GCAATTCT-GA-C-AC-CA--T--A---------T--AAT-GAC-TTT--A-A-ATCT--------------AAAG-----ATTT-GGGGTGTG--ATTC---TTTCGAAATTGT-TAA-A-AGTTAATAGACAGACGGAT---AAAA-C-TAA---CT-CG-AG--ATTTTATCT-CGGGTAAACTA-AAACA-TTTTTGCTCA-CCAGTG----AAATGAC-AAAACTAG--T-ATTGG---ATGTTG-TT---A-AACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGG-CGATTATCAACGA--TATCA-GGGT---TA-TT-CT-AAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA-TGAAAACA-TGTATGCTTTTA-TTTA-GAG--TTTTACATGTA-ATG-TATTTTGA
gi|3 : TGGACCTTTCA-TATCCCA-ATTC-T-AGTGAT-TATTTTATAAAAA--TG-C-AAAAAGGGT-------------------CAAGTTTCTG----TA--TGGGT-GATT--T---GAAAC-TG-AACGAGGGGT-A---GTTACCAGTATCT-CAC-ATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAA-A---------------------TCAACAGCA-TTA-CATAAAGT-GCAT---CATCT--TTGTTGTTGT--GGTA-T-----TTTCTTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAA--------------A-TTTATC--GG-GCA-CACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AGCACC-TA-ATTTTC-CTTCTA------------ATGC------------GT---------G---------TT-C------------------A--------C-----CA------CG-T-GAAGTTGCCTGCAT-TTTC--AA-ACATACATCTATATG-TACAaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggacctttcatatcccaattctagtgattattttataaaaatgcaaaaagggtcaagtttctgtatgggtgatttgaaactgaacgaggggtagttaccagtatctcacatggttttagtatatttgaatgatattgtaaaaatcaacagcattacataaagtgcatcatctttgttgttgtggtattttcttatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaaatttatcgggcacacggtagatgtgaccgttcaacagtcttgagcacctaattttccttctaatgcgtgttcaccacgtgaagttgcctgcattttcaaacatacatctatatgtaca
gi|4 : gtgcttgaaaatgcgctaaaaaggctgtatttttatgccaaggctacaagatcccacaccattgtatcacatgaggactatagaatgaatatagttcaaacgatattttaaaacaagttgtcttatgtatcaccataagcaattctgacaccatataatgactttaaatctaaagatttggggtgtgattctttcgaaattgttaaaagttaatagacagacggataaaactaactcgagattttatctcgggtaaactaaaacatttttgctcaccagtgaaatgacaaaactagtattggatgttgttaaacaacctaaggacattgattttgagtcagaaattcgcaattttataggcgattatcaacgatatcagggttattctaaaagtacatagattcaaaatcttctagcaaatgaaaacatgtatgcttttatttagagttttacatgtaatgtattttgaaaataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-TTCAAA--CGAT-ATTTTT-----AA--AACAAGTTGTT-C---TA-T-G-GA-TCA--CTAT-AA--GCAATTCT-GA-C-AC-CA--T--G---------T--AAT-GGC-TTT--A-A-ATCC--------------AAAG-----ATGT-GGGGTGTG--ATTC---TANNNNNNNNNN-NNN-N-NNNNNNNNNNNNNNNNNNN---NNNN-N-NNN---NN-NN-NN--NNNNNNNNN-NNNNNNNNNNNTAAACA-TTTTGTCTCA-CCAGTG----AAAT--------------------------------A---ACAACA-ACCTAAGGACAT-TGATT-T-TG-AGT-CAGAAATTCGCA-ATTTTA-TAGGCCGATTATCAACGA--TATCA--GGT---TATTT-CTGGAA--AG-TA-CA-TAGATTC-A-AAATCTTC-------TAGC--A---AA--GAAAAC---GTATGCTTTTA-TTTA-GAGTTTTTTACAT-TA-ATG-TATTTT
gi|4 : GACCTTTTA-TATCCTT-ATTC-T-AGAGGT-TGTTTTATAAAAG--TGGC-AAAAAGGGT-------------------CAAGTTTCTG----TA--TGGGT--ATT--T---GAAAC-TG-AACGAG--AT-A---GT-ACCAGTATC--AACGATG--G-TTTTAGTATATTTG-AA-TGATATTG-TAAAA-AGAAATGAAATTCGTCGATAGATCAACAGCA-TTT-CTTAAAGT-GCAT---AATCT--TTGTTGTTGG--GGTA-T-----TTTTCTATG--TCT-ACCAGTTTCTAC-CAGAAAACAGTGG-CCACTTG-TT--CTGAGTTAT-AAATTTA-AT-G--TAAAATTTATC--GG-GCAACACGGTAGATGTG-ACCG------TTCAACAGTCT-TG---AG-ACCATG-ATTTTTTCTTCTAATGCGTCCAGAAATCC------------GT---------G---------TT-CCAGATCCTTTCCATTTTCA--------C-----CA------CG-T-GAAGTTGCTTGCAT-TTTC--AA-A-ATACATCTATATG-TACAtgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtgaccttttatatccttattctagaggttgttttataaaagtggcaaaaagggtcaagtttctgtatgggtatttgaaactgaacgagatagtaccagtatcaacgatggttttagtatatttgaatgatattgtaaaaagaaatgaaattcgtcgatagatcaacagcatttcttaaagtgcataatctttgttgttggggtatttttctatgtctaccagtttctaccagaaaacagtggccacttgttctgagttataaatttaatgtaaaatttatcgggcaacacggtagatgtgaccgttcaacagtcttgagaccatgattttttcttctaatgcgtccagaaatccgtgttccagatcctttccattttcaccacgtgaagttgcttgcattttcaaaatacatctatatgtacaaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : ttcaaacgatatttttaaaacaagttgttctatggatcactataagcaattctgacaccatgtaatggctttaaatccaaagatgtggggtgtgattctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaacattttgtctcaccagtgaaataacaacaacctaaggacattgattttgagtcagaaattcgcaattttataggccgattatcaacgatatcaggttatttctggaaagtacatagattcaaaatcttctagcaaagaaaacgtatgcttttatttagagttttttacattaatgtatttttgcatatgttaatattgttagattttcaaatacctttctttttataggtcgaatatcaaaatccaaaaatatactttattgcatgagattacaaccagtgtgggtaaaaacaatacagtacaaaaacatgtagattaccaaatgtagcataaaccagtgttattatttatacatatgacaggcaattcactagagatgtcacaccaatgtTTGAAAA-TGTG------------GTCGAATTTTAT-CATAAGAAGCCAA-G-GCTA-CA-AG-ATCACACACCATTGCATCTAT-------------------AT--------------------ATG-AGGG----C------------------CGTAACAGAAATAGTGATTTAT-AACAGAAATAG-TTAAAAA-AAAT-ATTTT------AA--AACAATTTGTC-T---TT-T-G-TA-TCA--GTAC-AT--GCAATTTT-GA-T-AC-CT--T--AAAGGTCAACTGAAAC-GGT-TTTC-A-ACATTCGGTTATTGCTATTAAAAGTTGAAATGT-GCAGTGTG--GTTC---TTTCGAAAT-GT-TAA-A-AGTTTTTAGACAGACAGAA---AAAG-C-TCA---CT-AG-AT--ATTT---------------------CA-TCTCGG--------GTG--------GGCTAAAAC--A--T-TTTGGCTCA----C-TA---ACAACA-ACCCAGGAACAA-TGATT-T-TG-AGCACAGACAATCGTA-ATTTTA-TGGG-CGATTATCAACGA--TATCC-AGGT---TA-GT-TT-GAA--AA-TA-CA-TGGATTC-A-AAATCTCC-------TAGC--ATTGAATGGAAAACG-TGTATGCTTTTA-CATG---------TACATGTA-ACG-TATTTTGAaacatctccttatcacaatataacaagtcgtactgtatacaag
gi|5 : TGGACTTTTTA-TTTCTCA-ATTC-T-AGTGAG-TGT-----AAAAG--TG-C-AAAAAGGATTACGTTAGTCGTATATAATCAAGTTTCTGCATATA--TGGGT-GATC--T---GAGAC-TG-AACGAGGAAT-A---GTTA------TTT-AAC-ATG--T-TTTTTTTTTTTTTT-AAGTG-TATTCCTAAAG-A--AATGAAATTCATC-----ATCAACAGCA-TTA-CAAAGAGT-ACAT---AATCT--TTGTTGCTGG--GGTA-TTTTAATTTCTGATG--TCT-ACCGGTTTCT--------AGTAGTGG-TCATTTG-TT--TTGAATTAT-AAATTTA-A--GATGAGA-TTTATC--GG-GGT-CACGG------------------------CAGTCT-TG---GGCACC-TG-ATTTTC-CTTCTG------------ATGC------------GT---------taggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgtggactttttatttctcaattctagtgagtgtaaaagtgcaaaaaggattacgttagtcgtatataatcaagtttctgcatatatgggtgatctgagactgaacgaggaatagttatttaacatgtttttttttttttttaagtgtattcctaaagaaatgaaattcatcatcaacagcattacaaagagtacataatctttgttgctggggtattttaatttctgatgtctaccggtttctagtagtggtcatttgttttgaattataaatttaagatgagatttatcggggtcacggcagtcttgggcacctgattttccttctgatgcgttcaggaatcctt
gi|6 : ttgaaaatgtggtcgaattttatcataagaagccaaggctacaagatcacacaccattgcatctatatatgagggccgtaacagaaatagtgatttataacagaaatagttaaaaaaaatattttaaaacaatttgtcttttgtatcagtacatgcaattttgataccttaaaggtcaactgaaacggttttcaacattcggttattgctattaaaagttgaaatgtgcagtgtggttctttcgaaatgttaaaagtttttagacagacagaaaaagctcactagatatttcatctcgggtgggctaaaacattttggctcactaacaacaacccaggaacaatgattttgagcacagacaatcgtaattttatgggcgattatcaacgatatccaggttagtttgaaaatacatggattcaaaatctcctagcattgaatggaaaacgtgtatgcttttacatgtacatgtaacgtattttgataggttaatattgtttaatattgttagatgttcaaatacccttcctctttatcggtcgattctcataaatcaaaaaatataattacgtacatgagatacacccatatgggtaaagcaatacagtacaaaaacatgaagatgagcataaaccagcgtattactaaagatgttacaccgacgCGTATTTTAT-CATAATAAGCCAA-G-GCTA-CA-AG-ATTACACACCATTGCATA----------------------AC--------------------ATGTATGG----CCTTTCTATACATGAGTAATGTA---GAA----TAA---AT-A-------TAC-TTCAAAG--GAT-ATTGT------AA--TGCAATTTTTC-T---TA-T-G-TA-TCA--CTAT-AT--ACAATTTT-GA-T-AC-TT--T--A---------T--ATT-GGC-GTT--tcaggaatcctt
gi|6 : ggT---ACAA-C-TCT---TT-CG-AG--ATTTCATCT-CTGGTGAGCTA-AAAAG-TTTTGGCTCA-CTGGCG----AGACGAC-AAGGCTATATT-ATTGA---A----G-TA---ACAACA-ACCTAAGAACAT-TGATT-T-TG-AGCACAGAAATTCGTA-CTTATA-TAGG-CGATTATCAACGA--TACCC-AGAT---GA-TT-TT-GAA--AG-TA-CA-TGGATTC-A-AATTCTCCTACATTGTAGC--A---AT-GGAGAACG-TGTATGCTTTTA-Tctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacaactctttcgagatttcatctctggtgagctaaaaagttttggctcactggcgagacgacaaggctatattattgaagtaacaacaacctaagaacattgattttgagcacagaaattcgtacttatataggcgattatcaacgatacccagatgattttgaaagtacatggattcaaattctcctacattgtagcaatggagaacgtgtatgcttttat
gi|7 : ggcgtattttatcataataagccaaggctacaagattacacaccattgcataacatgtatggcctttctatacatgagtaatgtagaataaatatacttcaaaggatattgtaatgcaatttttcttatgtatcactatatacaattttgatactttatattggcgttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnT------AA--AACAAGTGTTCAT---TA-T-GATA-TCA--CTAT-AATCGCAATTCTTGA-CCAC-CGCCT--A---------T--AATCGACATTT--A-A-ATCCCT------------ATAG-----ATTTCGGGGT-TGGCACTCCCTTTCCGAATTCGTATAAGA-AGTTTATAGACAGACAGAT---AAAA-CATCATAGCG-CGGAG--ATTTCATCT-CTCGGAAACTA-AATCA-TTCTAGCTCACCCAGTGATACAGATGAC----ACTAG--TCATTGG---T----GATATCCTCAACACACCTAAGGACAT-TTGTT-TGTGTACT-CAGAAATTCGCA-ATTTTAGTAAG-CG--TATCAACGAACTTCCA-GGGTTAGTA-TC-CT-GAA--AGATACCC-TAGATTCAA-AAATCTTC-------T-GC--A---AT-GAAAACCACTGTATGCTATTT-TTTACCAG--CTTTTCATGTACATGATATTTT
gi|9 : a-TGC-----TTGACAAGGTCGTATTTTAT-CATAAtgagtatgttaacat
gi|9 : tgC--------------------ATG-AGGG----C------------------TGTA---GAA----TAG---ATAA-------TAG-TTC-AAA-CGAT-ATTTT------AA--AACAGTTTTTG-T---TA-T-G-TA-TCA--CTTT-AT--GCAATTCT-GA-T-AC-CT--T--A---------T--AAT-AAC-TTT------ATCC--------------AAAT-----ATGT-gtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgagggctgtagaatagataatagttcaaacgatattttaaaacagtttttgttatgtatcactttatgcaattctgataccttataataactttatccaaatatgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CGTTACTATGGTTAGATTCTCAACATACCCTGTCTTTGTTATAGCTCGATCTATCCAAAATATCCATAAATATCCCCTACTTGCACTGAGCATCGCTCGTAGTACATCTCAATCGGGAGTGAATAAACACACTACGCATAGCTCAACACGGAACGATATCTGATTACAATACTGTAGCTTAACCGGTGTATTTACTTTATACATTATGACGGCAATT
Unaligned ( gi|12 ): TACTAACAAATGTGTGCACCGACGCAAACTGTTTATTTCTCCAATTTTATTGATTATTTTTTAAAAGCGTAAACAACCTAATAAACTCCAAGTGTTGGAGTTAAGTGTATAATGAAGTTACTTAAACGGGTGATTTGAGACTGAATGACAAAGATGATTTTATAAGTT
Unaligned ( gi|13 ): GTTGCATGAGATATCCGTATGGGTCAAGCAACACAATACATAAAGTCATAAGCACAGAACAATGTATTTATATTTACATATGACAAAGATGTCACACCGACGTGAACCTTTTGATT
Unaligned ( gi|16 ): ACATTAAAGGTCAACTGAAACGGTTTTCAACATTCGGTTTTCGCTTGAATTTAGTTAGAAAATATAATTTCTTTAATGT