lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         11111111111111111111                                                                                   3333333333333333333333333333333333333333333333333333333333333333333333333333                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                1111111111111111111111                                                                                                                   
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1         33333       1                                         11      2222        55555555555555555555   2   222             11      1    1         11                1                  6666666666666666666666666666666666666666666666666666666666666666666666666666       3333                                                    111   44444                1111                      4444444    111111111111          11    333333333                                    999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999         3333                 55555555555555     3333                4444444444       11    11  1111                     333    222       11    11  11     1                555555555555555555555555  11            1111    11   22          1                     888888888888        22          33         22             222              2222222222222222222222    1             2   3                                11       4   2       1        2    1              1         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1   2                      5         44444       0         1 7   7 6 1            6        33      4444     4  33333333333333333333   7   000         2   22      5    5    6  3 44             2  1       2      4   9999999999999999999999999999999999999999999999999999999999999999999999999999       8888           7        2           77    3     1 1  1  000   88888  4         0   1111 2  4  88   88 66     7777777    555555555555   7 6    55    111111111  0     5  5  0     5   5 55        000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000         3333 2 5 7           99999999999999     6666      6666  7   9999999999 9     11    22  2222  666     6 0     1  000    111       88    77  33     7  555 0  2      333333333333333333333333  66            7777    00   11          5           7   6     222222222222  0   9 11  4 6     22    6    22         8   222       1 1    8888888888888888888888  0 7      6      6   1       1     7     2        6   99       0   0  88   0        7 4  5          6   5         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          .   .                      .         .....       .         . .   . . .            .        ..      ....     .  ....................   .   ...         .   ..      .    .    .  . ..             .  .       .      .   ............................................................................       ....           .        .           ..    .     . .  .  ...   .....  .         .   .... .  .  ..   .. ..     .......    ............   . .    ..    .........  .     .  .  .     .   . ..        ..........................................................................................         .... . . .           ..............     ....      ....  .   .......... .     ..    ..  ....  ...     . .     .  ...    ...       ..    ..  ..     .  ... .  .      ........................  ..            ....    ..   ..          .           .   .     ............  .   . ..  . .     ..    .    ..         .   ...       . .    ......................  . .      .      .   .       .     .     .        .   ..       .   .  ..   .        . .  .          .   .         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          0   5                      0         55555       0         0 0   0 7 0            0        55      0000     0  55555555555555555555   5   555         5   00      0    0    0  0 55             5  5       5      0   5555555555555555555555555555555555555555555555555555555555555555555555555555       5555           8        0           99    7     4 9  7  000   33333  0         7   1111 0  2  00   33 88     6666666    333333333333   9 0    22    333333333  3     4  9  7     0   4 66        555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555         5555 6 0 0           22222222222222     4444      4444  9   9999999999 1     44    11  1111  000     0 7     4  000    111       33    99  33     1  999 7  1      222222222222222222222222  22            0000    22   00          0           0   0     000000000000  7   0 00  7 7     00    0    33         3   777       0 0    7777777777777777777777  7 3      0      7   7       0     3     5        0   55       0   0  00   5        5 0  0          0   0         
consensus                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               NNNNNNNNNNCAAAANCAATTACCCGCTTCCAATTTCAGTCTATTTTGA---AAAAAAAA-TGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCANNGCTTCCGTATAGGCANGGCTACTGAGCT--AGCCAGGNAGGGGGTTCGAAGCAGTCANATTAAAGCAATGGGGAGATGGAATNCNNATGCTTATCTTGCNTANATTCGCCNTACCGTNTAAATTTGTCCTNCACCAGTTGTACCTTNGTAATTCTCNTTTCACCNTGTATATACGTNCANNTNCAATTTAATTTTTTTTCCTTAATTGCATGTCTAACCNAAACCAAGTATTCCAGGTGC--GTCTATCTGGATAGTCGG---ATC-NTCCATNCCTTATTGGGCCGGGN-TGGCNGCA-CAG-CAN-AGACC-----G-GGGGN----TCNC-A-CCTNAACCTGCCAGCAANGATC---ACCTGGAACGGNATTCGGGG-CCTNAAGTGGGACCAGCTAGAGCAAACTATG----GAA--AANATT-AT-CACNA---ACATGGTCAAA------AA---TCC--CCCCACCTGAT---TTA-TTCTGTTTCATNTNGGNT-CNAACGACCTTACGTCCTCCGACAGAATTAGTCACATCAAAATCCNTCGCCAACAANATNGCCNATGCACACTGTNNAG----ATNCCATGCTCTGTGGCCAAGTACAACCAA-CTTATTTGGTCAGGCATTACTTGCCTAGGCGCTANTGGCAC--TTTGCNCAGCCCTTGATGCGATGGT-CCCAAAATTAAC----AAAAAGCGTGCGAGGTTAAACCACCTAATGCAACAGTTCATGGCCAC--------GAAGTCCCGGGTNTNTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC-------AT-----TCGCCT--ATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCGGGNAGGGTTACAATCANTCTTGGT-CCAGAGNNTTCNTCAGTGACCCNTTCAATACCCCATTCCTGTGTTTGTTG
Reference ( gi|2 )            :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTAAAGGTACCNAAACCAATTACCCGCTTTCAATTTCATTCTATTTTG----AAAAAAAA-TGTCTCACCTGATTAAAGGTACCAGGTCATTACAGGTCTCACAGCTTCCGTATAGGCATGGCTAATG--CTTCAGCCCAGCAGGCGGTTCCAAGCAGTCAGATTGGAGCAATTGGGATATGGGATTCTAATGCTTATCTTGCCTATATTCGCCCTACTGTATAAAGCATTCCTTCATTACCCGCTTTTTTGCA---TTTTTTTCACCATGTATAT-------------------------TTCTTTA--T-TATGTCTAACCTAAACCAAGCATTCCAGGTGC--ATCTGTCTGGATAGTCGG---ATC-TTCAATTCCTTATTGGGCCGAGT-TAGCAGCA-CAG-CAT-AGACC-----GTGGGGG----TCTC-A-CCTCAGCCTGCGAGCAAAGATT---ACTTGGAACGGTATTCGGGG-CTTGAAGTGGGACCA-----AG-------TG----GAA--AACATT-AT-CACTA---ACATGGTTAAA------AA---TCC--CCCCACCTGATA--TTA-TTCTGTTTCATGTCCGAT-CTAATGACCTTACGTCCTCCAACC---TTAGT----TCAAAATCCCTTGCCATCAGCATA--CAATGCATATTGTACAG----ATACAATGCTTTGTGGCCAAA---AACCAAGCTTATTTAATCAGG-ATTACTTGC-TAGACGCTATTGGCAC--T--GTCCAGCCCTTG--GCGATGGG-CCCAAAATTAAC----AAAAGACGTTTGAGGTTAAACAACCTAATGCAAAAGTCCATGGCCACAGTCCACAGAGGTCTCATGTTTCTACATTTATCACGATCAAAATATCAAAATCTCAGAAATTCAATTATTCCGTCAAGACGGCTCTCACCTCTATCCGATTTAGGCAATCA-GTTCTTTCTCAATAATCTTCAGGCAGGGTTACGATCTGTCTTGGTGCCA-AGTATTCATCAGTGACACTTTCAATATCCCATCCCTTTGTTTGTTG
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG----AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCAACGCTTCC----AGGCAAGG------------------GGAGG-GGT-CGAAGCAGTCATATTAAAGCAATGGGGAGATGGAATGCCCATGCTTATCTTGCATAAATTCACCCTACCGTATAA---------TCACTA------TTTTGGTAATTTTTCTTTCACCTTGTATATATGTTCAATTTCA------------TTCCTTA--T-CATGCCTAACCTAAACCAAGTATTCCAGGTGC--ATCTGTCTGG-TAGTCGG---ATC---------CTTATTGGGCCGGGT-TAGTAGC--CAG-CAT-AGACC-----A-GGGGC----TCTC-G-CCTCAACCTGCCAGCAAA--TC---ACTTGGAACGGTATTTGGGG-CTTAAAGTGGGACCA-----AG-------------GAA--CCCATA-AT-CACGG---ACATGGTCAAA------CA---TTCATCCCCACGTGATA--TTC-TTCTGTTTCAT-TCGGAT-CAAATGGCCTTACGTCCTCCGACC---TCAGT----TTAAAATTCATCGCCAACAACATC--CAATGCACACTGTTAAG----ATACCATGCTCAGTGGCC-AA---ATCCAAGCTTGTTTGGTCCGG-CTTACTTGC-TAG-CGCTATTGGCAC--T--AAGCAGCCCTTT--GCGATGGA-CCCAAACGTAGCCAAAAAAAGCCGCGCGAGGTTAAACCACCTAATGCAAAAGTTCATTG-------CCACAGAGGTCGCGGGTATCTATATAGATCATGATC---ACATCCAAACCTCACAAATTAAATTATTCCATCAAGATGGCACTCGC--CTATCT-ATTTAGACAATCA-GTTATTTCTCAATAATC-TCGGGAAGGGTTACAATCAGTCTTGGT-CCA-AGATTTCGTCAGTGAC-CTTTCAATATCCCATTCCTGTGTTTGTTG
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTGA---AAAAAAAA-TGTCTCACCCGCTTACACGCACcttcttaacccatagctgtattgatttggggaaactttaacatacctaatttgttgtggaggtcactgtgccaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                         aaatatcgattcgatacatccagttacatcttactcaccattaccaagtccaaaaacggaccaattaggccggtccaacactgtcaaaatcaccaagtaaaatcttagtacttctggtcaggaccttcctcaaactcgtatctaacaacacaagtaccttacttgcacatatcgatgaAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTGAAAAAAAAAAAA-TGTCTCACCTGATTAAAGGTACC
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                       ggttactttgaattagtgaagttgtacacaggtatctgaccttcaattgatgcatccggtcacatcttactcaccattaccaaatccaaaacagaccaattagggcggtccaccatattcaaaatcaccaagcaaaacgatagtactatctgtcctgtacatctgatcaggaccttcgtcaaactcgtatctaacaacacaagtaccttacttacacatgtcaatggcAAACCAATTACCCGCTTTCAATTTCAGTCTGTTTTG------CAAAAA-TGCCT
gi|4                          : ttcaccacccttgtgtcccgccatatgtgggacattaagaagtgtcaaggctctcgcacaactcgttatcaaccaatacacctacgccaccgcattacagccgttcaacatttttcgcacccagtatggattacctcaatcttagcctgccccagtagatcagctgttacactttctagcctacttgcatattcgggatggctcttttgcaacagcccagctatatattaatccaatttcccattttcataaacttaagggtcattcagacacaacaaaaatttacacactctccaaacccctagaaggcatccgaagatctgcagatcctagcaaggaccttagaatcccaatctcgcagcagcttctcgctaaacttatccaagttttaccaatcaattgtcgatctccctatgaatcagccctgtttacagcttcatactgcttagcttattttgggttacttagattagcgaagttttacatctccaggtatttgaccttcatttgcaagcatccggtcacatctttcccactattactaagtccaaaatggaccagatagggcggtccaccattgtcaaaatcaacaaccaaaatcatggtactttctgtcctgtacatctggtcaggacctacctcaaactcagttctagcaacacaagtactttagccatacatattgatggtAGGTCATTATAGGTCTCATAGCTTCCGTATAGGCATGGCTACTGAGCT--AGCCAGACAGGGGGTTCAAAGCAGTCAGATTAAAGCAATGGGGAGATGGAATTCAAATGTTTATCTTACCTACATTCGCCATACTGTTTAAATTTGTCCTATATCAGTTGTACCTTTGTA---CTCATT-CATCATATATATACATGTATGTGCAATTTAATTTTTTTTCTTTAATTGTATGTCTAACCAAAACCAAGTATTCCAGGTGC--ATCTATCTGGATAGTTGG---AGC-ACCCATCCCTTATTGGGCCAGGG-TGGCAGCA-CAG-CAT-AGACC-----G-GGGGC----TCAC-A-CTTCAACCTGCCAGCAAGGAGG---ACTTGAAATGGTATTCCGCG-CTTAATGTGGGACCA-----AG-------TG----GAA--AAGATT-AT-CACTA---ACATGGTCAAA------AA---TTCA-CCCCACCTGAGT--TTC-TTCTGTTTCG-----GAT-CTAATGACCTTACGTTCTCCGACT---TTAGT----TCAAAATCCCTCGCCAACAACATC--CAATGCACACTATACAG----ATACAATGCTCTGTGGCCAAA---AACTAACCTTATTTGGTCAGG-ATTACTTGC-TAGGCGCTATTGGCGC--C--ACGTAGCCCTT
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTCTAATCAAACCCAAGTTTTCTAGGCAC--AACTATTTGGATAATTGG---ATC-ATCCATTCCTTACTGGGCGGGGC-TGGTTGCA-CAG-CAG-AGACCAGGGGGAGGGGGCAATTCTTAA-CCT--ACCTACTAG----GATC---ACTTGGAACGGCATCCGacggctaaacagttcatggccactgaagtcccgggtctgtacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatctt
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TAACTCTAATTAAGCATTCCATGACCTTATCTATCTGGATTGTGGGCTAATC-T---ATTACGTATTGGGCTGGAA-TAGCTG-G-CAG--AT-AGA
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gtcattttagatccactagttatcgcattggcattgacaccaaattaaccaaacttgggtttttacacaattacattaaacaaaagggatggtggtagtcaattcttatctttcatacactataacctagctattttgtcactacatcaacacacttactttcactcagttacattaaagaagcttttcaacgtatttgttaaattcggccatgccactagCCCGATGT--GTATATCTGGATAATCG-----TC-T---ATATTTTATTTG-CCGGGT-TAGCGGCA-CAG-CAT-AGACC-----GGGCGGC----TCAC-A-CCTCAACCTGTCAGCAAGGATC---ACTTGGAATGATATTCGGGG-CTTGAAGGGGGATCA-----AA-------TA----GAA--GAGACC-AT-CACAA---ACATGGTCAAC------AAGCTTCCTTCCCCGCCTAAGT--TCC-TTCGGTTTCATGTTGGAT-TTAATAAACTTACGTCCTCTGAGA---TTAAT----TCAAAATCCTTCGCCA-------A--C-ATGTACACTATACAGATCTATATAATGCACTGT-GCCCAA---AACTAAGCTTATCTGTTCGGG-ATTACTTGC-TAGGCGCTATTGGCACGAT--GTT---TCTCTG--G-GATGGGCCCCAAAATCAGC----AAAA
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGGTGC--GACTATCT-----ATCGG---AGCATTC-ATACCTTGCTGGTCCGGAA-TGGCTGCA-TAG-CAG-AGACC-------GGGGG----Ta
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      C--ATCCATCTGGATTGTGGG---ATA-ATGCATTCCCTATTGGGCTT-GTATCGCTGT--CAGACAG-AAACC-----A-GGGGC----ACTA-A-CATGAACACCCGAGCGTCCATT---TCCTGGAATGGAATTCGAGG-AGTCAAATGGGAGCA-----GG-------TT----GAACCAGCCTTGATGTAGCA---AAAAGACTGAA-----------------CCCGCCAGATATGTTAGTT---TTTCATGCGGGGT-CTAATGACCTCACgg
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   caGGGT-TGGCAGCA-ACG--AC-AAACC-----A--GGTG----ACGC-AATCTGAATCTG---GCAGCGGTTGTCACCTGGAAAGGAGTGCGGGA-CTCAGA-TGAGACCAGCTAGAGCAAACTATG----GAA--AAACTT-AG-TAATACAGAAATATTTTAA------A----TCC--CCTCATTT------TTA---CTGGTGCATTTAGGTT-CAAACGACCTTAC-------AACAGAATTAGTCACATCAAAACAATTT--CA-CAAAATGGCCTATGCAC-TTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT--TTTGCCCA--TCTTGATGCG--GGT-CCCAAAATTAAC----AAAAAGCGTtgatgagggcgtcacttgtacatatttttttttttacaaagatggcccccaatgtacattgtgtaggtttaatgctctttggcccaatacgaaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cttcccatactggggggggg-TGGCAGCAACAG-GACCAAACC-----A-GGTGG----ACGC-AATCTGAATCTG---GCAGCGGTTGTCACCTGGAAAGGAGTGCGGGG-ACTCAGATGAGACCAGCTAGAGCAAACTATG----GAA--AAC-TT-AG-TAATACAGAAATATTTTAA------A----TCC--CCTCATTT--T---TTA---CTGGTGCATTTAGGTT-CAAACGACCTTAC-------AACAGAATTAGTCACATCAAAA-CAATTTTCA-CAAAATGGCCTATGCACTTTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT--TTTGCCCA--TCTTGATGCG--GGT-CCCAAAATTAAC----AAAAAGCGTactagaattaaa
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gAACCTGCAAGCA----TC---ACGTGTGATGGCATTCGGGG-CCTTAAGTGGGATCA-----AG-------TACGAAGAA--TAGACC-AT-AACAA---ACATGGTTAGC------AA---TGC--TCC-A---GACG--TC----TTGTTTCATGT-GGATGCGAATGATCTTACATCactagaattaaa
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TC---ACCTGGAAAGGAGTGCGGGGACCAGA--TGAGACCAGCTAGAGCAAACTATG----GAA--AAACTT-AG----TA---ATACAG--AAATATTTTAA---TCC--CCTCATTT------TTA---CTGGTGCATTTAGGTT-CAAACGACCTTAC-------AACAGAATTAGTCACATCAAAACAATTT--CA-CAAAATGGCCTATGCACTTTGT-TAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT--TTTGCCCA--TCTTGATGCG--GGT-CCCAAAATTAAC----AAAAAGCGTtcatatttcgtccaatgttttcactaacatggtacaatgta
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           catactggggggggggggtggcagcaacgacaaaccaggtggacgcaatctgaatctggcagcgttgT----TCAGN-TCCCTCGCCAACAACATC--CAATGCACACTGTACAG----ATACAATGCTCTGTGGCCAAA---AACCAACCTTATTTGGTCAGG-ATTACTTGC-TAGGCGCCATCGTCAC--C--ACGTAGCCCTTactagaattaaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          attcacctattcaatttagacaatcacgtttttctcagtaatcAACAGTTCATGGCCAC--T-----GAAGTCCCGGGTCTGTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC-------AT-----TCACCT--ATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aggtcattataggtctcatagcttccgtataggcatggctactgagctagccagacagggggttcaaagcagtcagattaaagcaatggggagatggaattcaaatgtttatcttacctacattcgccatactgtttaaatttgtcctatatcagttgtacctttgtactcattcatcatatatatacatgtatgtgcaatttaattttttttctttaattgtatgtctaaccaaaaccaagtattccaggtgcatctatctggatagttggagcacccatcccttattgggccagggtggcagcacagcatagaccgggggctcacacttcaacctgccagcaaggaggacttgaaatggtattccgcgcttaatgtgggaccaagtggaaaagattatcactaacatggtcaaaaattcaccccacctgagtttcttctgtttcggatctaatgaccttacgttctccgactttagttcaaaatccctcgccaacaacatccaatgcacactatacagatacaatgctctgtggccaaaaactaaccttatttggtcaggattacttgctaggcgctattggcgccacgtagcccttacggctaAACAGTTCATGGCCACAG-------AAGTCCCGGGTTTATACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC-------AT-----TCACCT--ATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACAATCATTCTTGGT-CCAGAGTATTCCTCAGTGACCCATT-AATACCCC

Unaligned ( gi|5 ): TCCCCACCCTTGTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCATGGCTCTTGCACAACTCCTTGTTAACCAACACACATGCGACCTACGACACCGCATTACAGCAGTTCAAAATTTTCCGCATTCAGTATGCATTGCCTCAATCCTGTCCTGCCTCAGTAGACCAGCTGCTACACTTTCTAGCCTACTTGTCTATTCGGGGTGGCTCGTTTAGAACAGCCCAGCTATTTATTAGTGCAATTTCATGCTTTCATAAACTTATGTGTCATTCAGACACGACAAAAATTTACACTCTCTCCAAAACCTTAGAAGGCATCCGTAGATCCGCAGGTCCTACCAAGTACCTTAGAATCCCAATCTCACTCCAGGTTTTTACCAAACTTATCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTACTGCGTCATTTTGCGTAGCCTATTTTGGGTTTCTTCGAATTGGCGAAGTTTTACACCTCCAGGTATCTGACCTTCAAATGGACGCATCCGGTCACATCTTACTCACCATTACCAAGTCCAAAACGGACCAATTAGGGCGGTCCACCATTGTCAAAATCACCAAGCAAAATCATAGTACTTTCTGTCCTGTACATATGGTCAGAACCTTCCTCAAACTTGTATCTAGCAA
Unaligned ( gi|6 ): TTCCCACCCCTTTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCAAGCCTCTTGCACAACTCCTTGTCAACTAACACACATGTCACCTACGACACCACATTACAACAGTTCAATAATTTTTGCATTCAGTATGGATTGTCTCAATCCTGTCCTGCCCCAGTAGATCAGCTGCTACATTTTCTCACCTACTTGTCTATTCGGTGTGGCTCGTTTAGAACAAGCCAGCTATATATTAATGCAATTTCATATTTTCATAAACTTAAGTGGCATTCAGACTCGACAAAAATTTACACTGTCTCCGAAACTTTAGAAGGCATCCATAGATCCGCAGGTCCTACCAAGGACCTTAGAATCCCAATCTCACTCCAGCTTTTAACCAAACTTAGCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTTCTGCGTCATTTTGCTTAGCCTATTTTTCGGTTACTTTGAATTAGCGAAGTTGTACACAGGTATCCGACCTTCAATTGATGCATCCAAAACAGACCAATTAGGGCGGTCCACC
Unaligned ( gi|12 ): ATAATTACAGGGCATGCACGATTCAACCAAATCCTTCATTGTCACCAAACCCCTTGAGGGTTGCGCAGATCGGTGGGTTAACAAGGATATCCGTGCCCTATATCCTACCAACTTTTTCCACCGAATTATCACAGCCCTGCCTAATGTATGTAGGTCCCCATATGAAGCTGCATTTTTTTAGCAGCATTTACCATTACTTACTATGGCCTGCTCAGAGTTACCGAAACACTTGCACTCATGCACTCGGACCTGACTATTGTACATGAGCTTATGCCAGATTATTATACAAAAGTCAAAACTGACCAGATAGGTAGCTCCA
Unaligned ( gi|17 ): AGTTCCTAAGTCCAACACTATCAGTCAACCTCTGTCAAAATCAATAATGAAAAACACTTTCTGTCCAGTGGACTTGTTTATGACTTACCCCAGACTAAGACTTCACATTTCGAGCACACTATGGCTACTGGTGCACATCATGGCAAACCTATTACGCAGTCCTAATTCCTAGCCATTCTGAAAAATATGCTTT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       1111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                111                                                                      333333333333                                            1          11                    1             6666666666666666666666666666666666666666               4444444444444444444444444444444444444444444444     22222                         1111                                                                                   11                1111                                     55555555555555555555555555555555555555            11111111111111     33333333333333                            3333333333333333     2222                           33333                                          2222    333              1        1                 22      1           222               111               2                                 66666666                                                              555555555555555555555555555555555                    1   1                                         1   2                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               1                                444        3           2   2 2                       22      33       1  666666666666 0  77 1     8   6         1      2    0    0     1  1 11           0 1  1   0    1    2 1 7777777777777777777777777777777777777777  3    1   3   1111111111111111111111111111111111111111111111     00000     1                   0000 2         0 11 3    55  0  2               1    1  44   99 44     99999  4  88 1  99   1            4444    0     3  1         5 1  0        66666666666666666666666666666666666666   1  1   0 99999999999999     11111111111111         6 2  1  1  0       2222222222222222     6666 888     7 11  1 77  4  2  00000  2      2    66  9999  1 3       1       5555    444       1      5  9     5   5      1      11   1  1     99    555  1            111      8   4 5  4       2           2             66666666      0     1 1                  3        4   2 0             888888888888888888888888888888888   0                0   6             0  2  1             1       3   3  22   1       6  1  6    0         2         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               .                                ...        .           .   . .                       ..      ..       .  ............ .  .. .     .   .         .      .    .    .     .  . ..           . .  .   .    .    . . ........................................  .    .   .   ..............................................     .....     .                   .... .         . .. .    ..  .  .               .    .  ..   .. ..     .....  .  .. .  ..   .            ....    .     .  .         . .  .        ......................................   .  .   . ..............     ..............         . .  .  .  .       ................     .... ...     . ..  . ..  .  .  .....  .      .    ..  ....  . .       .       ....    ...       .      .  .     .   .      .      ..   .  .     ..    ...  .            ...      .   . .  .       .           .             ........      .     . .                  .        .   . .             .................................   .                .   .             .  .  .             .       .   .  ..   .       .  .  .    .         .         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               0                                000        2           5   5 5                       00      22       0  888888888888 2  22 0     8   5         0      5    2    0     2  0 88           2 0  0   0    0    5 0 2222222222222222222222222222222222222222  2    0   2   8888888888888888888888888888888888888888888888     00000     0                   6666 0         1 99 4    22  2  8               0    0  99   55 66     00000  0  88 0  44   0            2222    5     9  0         4 0  9        00000000000000000000000000000000000000   0  9   1 99999999999999     00000000000000         9 6  0  0  7       0000000000000000     8888 888     3 11  1 66  4  6  00000  6      2    33  4444  0 9       1       4444    444       4      0  4     0   6      0      88   0  9     77    222  8            777      0   6 0  0       5           5             22222222      2     0 0                  2        0   5 8             555555555555555555555555555555555   8                0   0             8  0  0             0       3   3  00   0       7  0  7    7         5         
consensus                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGAGCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTNCATCA-CCGCAC-CTTNGTA-TTTTCCTTTCACCNTGTATATACGTTNA------TTTTCAAC-TA------TTTCTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACCAG-TAGAGCAAACTATGGAAAA--GAT-TA----T----CACAAACATGGTCAAAAA---TCC--CCCCACCTGA-T-TTNTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCAC-T---CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCACT-CGCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAACNACCTAATGCAANAGTTCATGGCCACA-------GAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATT------------CATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
Reference ( family-2418 )     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAANCAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCANNGCTTCCGTATAGGCANGGCTACTGAGCT--AGCCAGGNAGGGGGTTCGAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATNCNNATGCTTATCTTGCNTANATT-CGCCNTACCGTNTAAATTTGTC-CTNCACCAGTTGTAC-CTTNGTAATTCTCNTTTCACCNTGTATATACGTNCA------NNTNCAATTTAATTTTTTTTCCTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CGTCTATCTGGATAGTCGGATCNTCCATNCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNTCNCA--CCTNAACCTGCCAGCAANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACCAGCTAGAGCAAACTATGGAAAA--NAT-TA----T----CACNAACATGGTCAAAAA---TCC--CCCCACCTGA-T-TTATT-CTGTTTCATNTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCACAT---CAAAATCCNTCGCCAAC-AANATNG---CCNATGCACACTGTNNAG----ATNCCATGCTCTGTGGCCAAGTACAACCAA-CTTATTTGGTCAGGCATTACTTGCCTAGGCGCTANTGGCACTTTGCNCAGCCCTTGATGCGAT-GGTCCCAAAATTAAC---AAAAAG-CGTGCGAG-GTTAAACCACCTAATGCAACAGTTCATGGCCAC--------GAAGTCCCGGGTNTNTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATT------------CATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCGGGNAGGGTTACAATCANTCTTGGT-CCAGAGNNTTCNTCAGTGACCCNTTCAATACCCCATTCCTGTGTTTGTTG
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCAACGCTTCC----AGGCAAGG------------------GGAGGGG--TCGAAGCAGTCATATTAAAGCAATGGGGA-GATGGAATGCCCATGCTTATCTTGCATAAATT-CACCCTACCGTATAA----------TCAC------TAT-TTTGGTAATTTTTCTTTCACCTTGTATATATGTTCA------ATTTCA------------TTCCTTA--T----CATGCC-----TAACCTAAACCAAGTATTCCAGGTG----CATCTGTCTGG-TAGTCGGAT--------CCTTATTGGGCCGGGTTAGTAGC--CAG-CAT-AGACC---A-GG-GGCTCTCG--CCTCAACCTGCCAGCAA--ATCACTTGGAACGGTATTTGGGGCTTAAAGTGGGACCA-----AGGAACCCATA------------A----T----CACGGACATGGTCAAACA---TTCATCCCCACGTGA-TATTCTT-CTGTTTCAT-TCGGATCAAATGGCCTTACGTCCTCCGAC----CTCAGT----T---TAAAATTCATCGCCAAC-AACAT-----CCAATGCACACTGTTAAG----ATACCATGCTCAGTGGCCAAAT----CCAAGCTTGTTTGGTCCGGC-TTACTTG-CTA-GCGCTATTGGCAC--TAAGCAGCCCTT--TGCGAT-GGACCCAAACGTAGCCAAAAAAAGCCGCGCGAG-GTTAAACCACCTAATGCAAAAGTTCATTGCCACA-------GAGGTCGCGGGTATCTATATAGATCATGATCAC---ATCCAAACCTCACAAATTAAATTATTCCATCAAGATGGCACTC------GC--------CTA-TCTATTTAGACAATCA-GTTATTTCTCAATAATC-TCGGGAAGGGTTACAATCAGTCTTGGT-CCA-AGATTTCGTCAGTGA-CCTTTCAATATCCCATTCCTGTGTTTGTTG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGGTGGCAGCA-ACG--AC-AAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGTTG-TCACCTGGAAAGGAGTGCGGGGACCAGA-TGAGACCAGCTAGAGCAAACTATGGAAAA--ACT-TAGTAATA---CAGAAATATTTT----AA---TCC--CCTCATTT-----TTA---CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTC--AC-AAAATGG---CCTATGCACTTTGTT-AG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCATTTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAActtcttaacccatagctgtattgatttggggaaactttaacatacctaatttgttgtggaggtcactgtgccaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           catactggggggggTGGCAGCAACAG-GACCAAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGGACTCAGATGAGACCAGCTAGAGCAAACTATGGAAAACTTAG-TA----A----TACAGAAATATTT-TAAA---TCC--CCTCATTT---T-TTA---CTGGTGCATTTAGGTTCAAACGACCTTA-------CAAC-AGAATTAGTCACAT---CAAAA-CAATTTTC-AC-AAAATGG---CCTATGCACTTTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCATTTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       g----CATCCATCTGGATTGTGGGATAATGCATTCCCTATTGGGCTTGTATCGCTGT--CAGACAG-AAACC---A-GG-GGCACTAA--CATGAACACCCGAGCGTCCATTTCCTGGAATGGAATTCGAGGAGTCAAATGGGAGCAGGTTGAACCAGCCTTG--------ATGTA----G----CAAAAA---GACTGAA-----------CCCGCCAGA-T-ATGTTAGTTTTTCATGCGGGGTCTAATGACCTCA------CTGATGAGGGC--GTCACTTGTACATATTTTTTTTTTTACAAAGATGGCCCCCAATGTACATTGTGTAG----GTTTAATGCTCTTTGGCCCAATACGA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   caGTCATTTTAGATCCACTAGTTATCGCATTGGCATTGACACCAAATT--AACCAAACTTGGGTTTTTACACAATTACATTAAA-CAAAAGGGATGGTGGTAGTCA-ATTCTTATCTTTCATACACTATAACCTAGC-TAT---TTTGTCACTACATCA---ACACACTTA---------CTTTCACTCAGT---TACATTAAAGAAGCTTTTCAACGTA------TTTGTTAAATTCGGCCATGCCACTAGTAACTCTAATTAAGCATTCCA--TGACCTTATCTATCTGGATTGTGGGCTAATCTATTACGTATTGGGCTGGAATAGCTG-G-CAG--AT-AGAaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTATTTTGAAAAAAAAAAAATGTCTCACCTGATTAAAGGTACC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                      ggttactttgaattagtgaagttgtacacaggtatctgaccttcaattgatgcatccggtcacatcttactcaccattaccaaatccaaaacagaccaattagggcggtccaccatattcaaaatcaccaagcaaaacgatagtactatctgtcctgtacatctgatcaggaccttcgtcaaactcgtatctaacaacacaagtaccttacttacacatgtcaatggcCAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCAC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   aaatatcgattcgatacatccagttacatcttactcaccattaccaagtccaaaaacggaccaattaggccggtccaacactgtcaaaatcaccaagtaaaatcttagtacttctggtcaggaccttcctcaaactcgtatctaacaacacaagtaccttacttgcacatatcgatgaAACCTGCAAGCA----TCACGTGTGATGGCATTCGGGGCCTTAAGTGGGATCAAGTA---CGAA-----GAATA--GAC-CA----T----AACAAACATGGTTAGCAA---T-G--CTCCA---GA----CGTC-TTGTTTCATGTGGATGCGAATGATCTTACATC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTC-----TAATCAAACCCAAGTTTTCTAGGCA----CAACTATTTGGATAATTGGATCATCCATTCCTTACTGGGCGGGGCTGGTTGCA-CAG-CAG-AGACCAGGG-GG-AGGGGGCAATTCTTAACCTACCTACTAGGATCACTTGGAACGGCATCCGtcatatttcgtccaatgttttcactaacatggtacaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNAAACCAATTACCCGCTTTCAATTTCATTCTATTTTG---AAAAAAAA-TGTCTCACCTGATTAAAGGTACCAGGTCATTACAGGTCTCACAGCTTCCGTATAGGCATGGCTAATG--CTTCAGCCCAGCAGGCGGTTCCAAGCAGTCAGATTGGAGCAATTGGGA-TATGGGATTCTAATGCTTATCTTGCCTATATT-CGCCCTACTGTATAAAGCATTC-CTTCATTACCCGCTT-TTTTGCA-TTTT--TTTCACCATGTATAT-------------------------------TTCTTTA-TT-----ATGTC-----TAACCTAAACCAAGCATTCCAGGTG----CATCTGTCTGGATAGTCGGATCTTCAATTCCTTATTGGGCCGAGTTAGCAGCA-CAG-CAT-AGACC---GTGG-GGGTCTCA--CCTCAGCCTGCGAGCAAAGATTACTTGGAACGGTATTCGGGGCTTGAAGTGGGACCA-----AG-------TGGAAAA--CAT-TA----T----CACTAACATGGTTAAAAA---TCC--CCCCACCTGA-TATTATT-CTGTTTCATGTCCGATCTAATGACCTTACGTCCTCCAAC-C---TTAGT----T---CAAAATCCCTTGCCATC-AGCATA-----CAATGCATATTGTACAG----ATACAATGCTTTGTGGCCAAA---AACCAAGCTTATTTAATCAGG-ATTACTTGC-TAGACGCTATTGGCACT--GTCCAGCCCTTG--GCGAT-GGGCCCAAAATTAAC---AAAAGA-CGTTTGAG-GTTAAACAACCTAATGCAAAAGTCCATGGCCACAGTCCACAGAGGTCTCATGTTTCTACATTTATCACGATCAAAATATCAAAATCTCAGAAATTCAATTATT------------CCGTCAAGACGGCTCTCACCTCTATCCGATTTAGGCAATCA-GTTCTTTCTCAATAATCTTCAGGCAGGGTTACGATCTGTCTTGGTGCCA-AGTATTCATCAGTGACACTTTCAATATCCCATCCCTTTGTTTGTTG
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ttaaaggtacCAGGTG----CGACTATCTA-----TCGGAGCATTCATACCTTGCTGGTCCGGAATGGCTGCA-TAG-CAG-AGACC---G-GG-GG
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTGTTTTG---CAAAAAtgg
gi|4                          : ttcaccacccttgtgtcccgccatatgtgggacattaagaagtgtcaaggctctcgcacaactcgttatcaaccaatacacctacgccaccgcattacagccgttcaacatttttcgcacccagtatggattacctcaatcttagcctgccccagtagatcagctgttacactttctagcctacttgcatattcgggatggctcttttgcaacagcccagctatatattaatccaatttcccattttcataaacttaagggtcattcagacacaacaaaaatttacacactctccaaacccctagaaggcatccgaagatctgcagatcctagcaaggaccttagaatcccaatctcgcagcagcttctcgctaaacttatccaagttttaccaatcaattgtcgatctccctatgaatcagccctgtttacagcttcatactgcttagcttattttgggttacttagattagcgaagttttacatctccaggtatttgaccttcatttgcaagcatccggtcacatctttcccactattactaagtccaaaatggaccagatagggcggtccaccattgtcaaaatcaacaaccaaaatcatggtactttctgtcctgtacatctggtcaggacctacctcaaactcagttctagcaacacaagtactttagccatacatattgatggtAGGTCATTATAGGTCTCATAGCTTCCGTATAGGCATGGCTACTGAGCT--AGCCAGACAGGGGGTTCAAAGCAGTCAGATTAAAGCAATGGGGA-GATGGAATTCAAATGTTTATCTTACCTACATT-CGCCATACTGTTTAAATTTGTC-CTATATCAGTTGTAC-CTTTGTA---CTCATT-CATCATATATATACATGTA------TGTGCAATTTAATTTTTTTTCTTTAATT-G--TATGTC-----TAACCAAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTTGGAGCACCCATCCCTTATTGGGCCAGGGTGGCAGCA-CAG-CAT-AGACC---G-GG-GGCTCACA--CTTCAACCTGCCAGCAAGGAGGACTTGAAATGGTATTCCGCGCTTAATGTGGGACCA---AG---------TGGAAAA--GAT-TA----T----CACTAACATGGTCAAAAA---TTCA-CCCCACCTGAGT-TTCTT-CTGTTTC-----GGATCTAATGACCTTACGTTCTCCGAC----TTTAGT----T---CAAAATCCCTCGCCAAC-AACAT-----CCAATGCACACTATACAG----ATACAATGCTCTGTGGCCAAA---AACTAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCTATTGGCGC--CACGTAGCCCTTtgcct
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AACAGTTCATGGCCACT-------GAAGTCCCGGGTCTGTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATT------------CATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTacggctaaacagttcatggccactgaagtcccgggtctgtacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatctt
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aggtcattataggtctcatagcttccgtataggcatggctactgagctagccagacagggggttcaaagcagtcagattaaagcaatggggagatggaattcaaatgtttatcttacctacattcgccatactgtttaaatttgtcctatatcagttgtacctttgtactcattcatcatatatatacatgtatgtgcaatttaattttttttctttaattgtatgtctaaccaaaaccaagtattccaggtgcatctatctggatagttggagcacccatcccttattgggccagggtggcagcacagcatagaccgggggctcacacttcaacctgccagcaaggaggacttgaaatggtattccgcgcttaatgtgggaccaagtggaaaagattatcactaacatggtcaaaaattcaccccacctgagtttcttctgtttcggatctaatgaccttacgttctccgactttagttcaaaatccctcgccaacaacatccaatgcacactatacagatacaatgctctgtggccaaaaactaaccttatttggtcaggattacttgctaggcgctattggcgccacgtagcccttacggctaATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGNTCCCTCGCCAAC-AACAT-----CCAATGCACACTGTACAG----ATACAATGCTCTGTGGCCAAA---AACCAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCCATCGTCAC--CACGTAGCCCTTntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            attcacctattcaatttagacaatcacgtttttctcagtaatcttcAACAGTTCATGGCCACA-------GAAGTCCCGGGTTTATACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATT------------CATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACAATCATTCTTGGT-CCAGAGTATTCCTCAGTGACCCATT-AATACCCCacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       attcacctattcaatttagacaatcacgtttttctcagtaatcttcagntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaCCCGATG----TGTATATCTGGATA-----ATCGTCTATATTTTATTTG-CCGGGTTAGCGGCA-CAG-CAT-AGACC---G-GGCGGCTCACA--CCTCAACCTGTCAGCAAGGATCACTTGGAATGATATTCGGGGCTTGAAGGGGGATCAA------------ATAGAAGA--GAC-CA----T----CACAAACATGGTCAACAAGCTTCCTTCCCCGCCTAAGT-TCCTT-CGGTTTCATGTTGGATTTAATAAACTTACGTCCTCTGA----GATTAAT----T---CAAAATCCTTCGCCAAC--------------ATGTACACTATACAGATCTATATAATGCACTGTGCCCAA----AACTAAGCTTATCTGTTCGGG-ATTACTTG-CTAGGCGCTATTGGCACGATGTTT--CTC----TGGGATGGGCCCCAAAATCAGC---AAAAAtgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGTTGGCAGCA-ACG--AC-AAACC---A-GG-TGA-CGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGAC-TCAGATGAGACCAGCTAGAGCAAACTATGGAAAA--ACT-TAG---TAATACAGAAATATTTT---AAA---TCC--CCTCATT----T-TTA---CTGGTGCATTTAGGTTCAAACGACCTTA-------CAAC-AGAATTAGTCACAT---CAAAA-CAATTTC--AC-AAAATGG---CCTATGCAC-TTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCATTTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAA

Unaligned ( gi|5 ): TCCCCACCCTTGTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCATGGCTCTTGCACAACTCCTTGTTAACCAACACACATGCGACCTACGACACCGCATTACAGCAGTTCAAAATTTTCCGCATTCAGTATGCATTGCCTCAATCCTGTCCTGCCTCAGTAGACCAGCTGCTACACTTTCTAGCCTACTTGTCTATTCGGGGTGGCTCGTTTAGAACAGCCCAGCTATTTATTAGTGCAATTTCATGCTTTCATAAACTTATGTGTCATTCAGACACGACAAAAATTTACACTCTCTCCAAAACCTTAGAAGGCATCCGTAGATCCGCAGGTCCTACCAAGTACCTTAGAATCCCAATCTCACTCCAGGTTTTTACCAAACTTATCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTACTGCGTCATTTTGCGTAGCCTATTTTGGGTTTCTTCGAATTGGCGAAGTTTTACACCTCCAGGTATCTGACCTTCAAATGGACGCATCCGGTCACATCTTACTCACCATTACCAAGTCCAAAACGGACCAATTAGGGCGGTCCACCATTGTCAAAATCACCAAGCAAAATCATAGTACTTTCTGTCCTGTACATATGGTCAGAACCTTCCTCAAACTTGTATCTAGCAA
Unaligned ( gi|6 ): TTCCCACCCCTTTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCAAGCCTCTTGCACAACTCCTTGTCAACTAACACACATGTCACCTACGACACCACATTACAACAGTTCAATAATTTTTGCATTCAGTATGGATTGTCTCAATCCTGTCCTGCCCCAGTAGATCAGCTGCTACATTTTCTCACCTACTTGTCTATTCGGTGTGGCTCGTTTAGAACAAGCCAGCTATATATTAATGCAATTTCATATTTTCATAAACTTAAGTGGCATTCAGACTCGACAAAAATTTACACTGTCTCCGAAACTTTAGAAGGCATCCATAGATCCGCAGGTCCTACCAAGGACCTTAGAATCCCAATCTCACTCCAGCTTTTAACCAAACTTAGCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTTCTGCGTCATTTTGCTTAGCCTATTTTTCGGTTACTTTGAATTAGCGAAGTTGTACACAGGTATCCGACCTTCAATTGATGCATCCAAAACAGACCAATTAGGGCGGTCCACC
Unaligned ( gi|12 ): ATAATTACAGGGCATGCACGATTCAACCAAATCCTTCATTGTCACCAAACCCCTTGAGGGTTGCGCAGATCGGTGGGTTAACAAGGATATCCGTGCCCTATATCCTACCAACTTTTTCCACCGAATTATCACAGCCCTGCCTAATGTATGTAGGTCCCCATATGAAGCTGCATTTTTTTAGCAGCATTTACCATTACTTACTATGGCCTGCTCAGAGTTACCGAAACACTTGCACTCATGCACTCGGACCTGACTATTGTACATGAGCTTATGCCAGATTATTATACAAAAGTCAAAACTGACCAGATAGGTAGCTCCA
Unaligned ( gi|17 ): AGTTCCTAAGTCCAACACTATCAGTCAACCTCTGTCAAAATCAATAATGAAAAACACTTTCTGTCCAGTGGACTTGTTTATGACTTACCCCAGACTAAGACTTCACATTTCGAGCACACTATGGCTACTGGTGCACATCATGGCAAACCTATTACGCAGTCCTAATTCCTAGCCATTCTGAAAAATATGCTTT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                111                                                                      4444444444444                                            1          1                     1             2222222222        55555555555555555555            999999999999999999999999999999999999999999999999999     22222                         1111                                                                                   11               1111                                       7777777777777777777777777777777777777777            22222222222222    222222222    11                            333333333333333333333333333333                       22222                                          2222    111              1        1                33333333333333333          222               111                                             3333333                                                                   555555555555555555555555555555555                    1   1                                         1   1                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                444    0               1   1 1                       1       33          6666666666666 0  33       8   1         1      2    0    0     1    0            0 1  0   0         2   2222222222  44    00000000000000000000        1   444444444444444444444444444444444444444444444444444     00000     1                   0000           0 0  0     3  0  2               1    1  44   99 44     99999  4  66 4  11   1           4444     0     3  1         5 1  0       4 0000000000000000000000000000000000000000  1   0   0 00000000000000    444444444  1 11         6 2  1  1  0       888888888888888888888888888888     7 11  1 77  4  2  55555  2      2    66  9999  1 1       1       2222    555       1      5  9     5    4     0     99999999999999999    99    555  1            111      8   3    3       1           1         2222222           0     1 1                  3        1   2 0             888888888888888888888888888888888   0                0   6             0              0            3   3       3       6     6              1         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ...    .               .   . .                       .       ..          ............. .  ..       .   .         .      .    .    .     .    .            . .  .   .         .   ..........  ..    ....................        .   ...................................................     .....     .                   ....           . .  .     .  .  .               .    .  ..   .. ..     .....  .  .. .  ..   .           ....     .     .  .         . .  .       . ........................................  .   .   . ..............    .........  . ..         . .  .  .  .       ..............................     . ..  . ..  .  .  .....  .      .    ..  ....  . .       .       ....    ...       .      .  .     .    .     .     .................    ..    ...  .            ...      .   .    .       .           .         .......           .     . .                  .        .   . .             .................................   .                .   .             .              .            .   .       .       .     .              .         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                000    8               0   0 0                       2       22          5555555555555 2  88       8   0         0      5    2    0     2    8            2 0  2   0         5   5555555555  88    55555555555555555555        0   555555555555555555555555555555555555555555555555555     00000     0                   6666           1 5  2     4  2  4               0    0  99   55 66     00000  0  33 7  88   0           3333     5     9  0         4 0  9       4 0000000000000000000000000000000000000000  1   9   1 77777777777777    666666666  0 11         7 6  0  0  7       000000000000000000000000000000     3 11  1 66  4  6  77777  3      2    77  4444  0 7       1       4444    000       4      0  4     0    2     8     55555555555555555    77    222  0            777      0   8    8       0           0         5555555           2     2 0                  2        0   5 8             555555555555555555555555555555555   8                0   0             8              7            3   3       7       7     7              0         
consensus                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGA-GCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CCGCACTTTTGTA-TTTT-CTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T----CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCACAT----CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCA-C----T-C-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAACNACCTAATGCAANAGTTCATGG-------CCACAGAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATT------------CATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
Reference ( family-2418 )     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGA-GCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTNCATCA-CCGCACCTTNGTA-TTTTCCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T----CACAAACATGGTCAAAAA---TCC--CCCCACCTGA-T-TTNTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCAC-T----CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCA-C----T-C-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAACNACCTAATGCAANAGTTCATGG-------CCACAGAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATT------------CATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCAACGCTTCC----AGGCAAGG-------------------GGAGGGG--TCGAAGCAGTCATATTAAAGCAATGGGGA-GATGGAATGCCCATGCTTATCTTGCATAAATT-CACCCTACCGTATAA-------------TCA-CT--ATTTTGGTAATTTTTCTTTCACCTTGTATATATGTTCA------ATTTCA--------TT-----CCTTA--T----CATGCC-----TAACCTAAACCAAGTATTCCAGGTG----CATCTGTCTGG-TAGTCGGATC--------CTTATTGGGCCGGGTTAGTAGC--CAG-CAT-AGACC---A-GG-GGCTCTCG--CCTCAACCTGCCAGCAA--ATCACTTGGAACGGTATTTGGGGCTTAAAGTGGGACC-A------AGGAACCCATA-------------A----T----CACGGACATGGTCAAACA---TTCATCCCCACGTGA-TATTCTT-CTGTTTCAT-TCGGATCAAATGGCCTTACGTCCTCCGAC-C---TCAGT----T----TAAAATTCATCGCCAAC-AACAT-----CCAATGCACACTGTTAAG----ATACCATGCTCAGTGGCCAAAT----CCAAGCTTGTTTGGTCCGGC-TTACTTGC-TAG-CGCTATTGGCA-C----TAA-G--CAGCCCTT--TGCGAT-GGACCCAAACGTAGCCAAAAAAAGCCGCGCGAG-GTTAAACCACCTAATGCAAAAGTTCATTG-------CCACAGAGGTCGCGGGTATCTATATAGATCATGATCAC---ATCCAAACCTCACAAATTAAATTATTCCATCAAGATGGCACTC------GC--------CTA-TCTATTTAGACAATCA-GTTATTTCTCAATAATC-TCGGGAAGGGTTACAATCAGTCTTGGT-CCA-AGATTTCGTCAGTGA-CCTTTCAATATCCCATTCCTGTGTTTGTTG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGGTGGCAGCA-ACG--AC-AAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGTTG-TCACCTGGAAAGGAGTGCGGGGACCAGA-TGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATA---CAGAAATATTTT----AA---TCC--CCTCA------T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT----CAAAA-CAATTTC--AC-AAAATGG---CCTATGCACTTTGTT-AG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCA-T----T-TTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAActtcttaacccatagctgtattgatttggggaaactttaacatacctaatttgttgtggaggtcactgtgccaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            catactggggggggTGGCAGCAACAG-GACCAAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGGACTCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAACTTAGT-AA----TA---CAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTTACTGGTGCATTTAGGTTCAAACGACCTTA-------CAAC-AGAATTAGTCACAT----CAAAA-CAATTTTC-AC-AAAATGG---CCTATGCACTTTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCATT----T-T-GCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        g----CATCCATCTGGATTGTGGGATAATGCATTCCCTATTGGGCTTGTATCGCTGT--CAGACAG-AAACC---A-GG-GGCAC-TAA-CATGAACACCCGAGCGTCCATTTCCTGGAATGGAATTCGAGGAGTCAAATGGGAGC-AGG-TTGAACCAGCCTT---------GATGTA----G----CAAAAA---GACTGAA-----------CCCGCCAGA-T-ATGTTAGTTTTTCATGCGGGGTCTAATGACCTCA------CTGATGAGGGC--GTCAC-TTGTACATATTTTTTTTTTTACAAAGATGGCCCCCAATGTACATTGTGTAG----GTTTAATGCTCTTTGGCCCAATACGA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   caGTCATTTTAGATCCACTAGTTATCGCATTGGCATTGACACCAA-ATT--AACCAAACTTGGGTTTTTACACAATTACATTAAA-CAAAAGGGATGGTGGTAGTC-AATTCTTATCTTTCATACACTATAACCTAGC-TAT---TTTGTCACTACATCA-ACACAC----------TTACTTTCACTCAGT---TACATTAAAGAAGCTTTTCAACGT--ATTT-----GTTAAATTCGGCCATGCCACTAGTAACTCTAATTAAGCATTCCA--TGACCTTATCTATCTGGATTGTGGGCTAATCTATTACGTATTGGGCTGGAATAGCTG-G-CAG--AT-AGAaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTATTTTGAAAAAAAAAAAATGTCTCACCTGATTAAAGGTACC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                      ggttactttgaattagtgaagttgtacacaggtatctgaccttcaattgatgcatccggtcacatcttactcaccattaccaaatccaaaacagaccaattagggcggtccaccatattcaaaatcaccaagcaaaacgatagtactatctgtcctgtacatctgatcaggaccttcgtcaaactcgtatctaacaacacaagtaccttacttacacatgtcaatggcCAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCAC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aaatatcgattcgatacatccagttacatcttactcaccattaccaagtccaaaaacggaccaattaggccggtccaacactgtcaaaatcaccaagtaaaatcttagtacttctggtcaggaccttcctcaaactcgtatctaacaacacaagtaccttacttgcacatatcgatgaAACCTGCAAGC----ATCACGTGTGATGGCATTCGGGGCCTTAAGTGGGATCAA-G-TA---CGAA-----GAATA---GAC-CA----T----AACAAACATGGTTAGCAA---T-G--CTCCA---GA-C-GTCT---TGTTTCATGTGGATGCGAATGATCTTACATC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTC-----TAATCAAACCCAAGTTTTCTAGGCA----CAACTATTTGGATAATTGGATCATCCATTCCTTACTGGGCGGGGCTGGTTGCA-CAG-CAG-AGACCAGGG-GG-AGGGGGCAATTCTTAACCTACCTACTAGGATCACTTGGAACGGCATCCGtcatatttcgtccaatgttttcactaacatggtacaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNAAACCAATTACCCGCTTTCAATTTCATTCTATTTTG---AAAA-AAAATGTCTCACCTGATTAAAGGTACCAGGTCATTACAGGTCTCACAGCTTCCGTATAGGCATGGCTA---ATGCTTCAGCCCAGCAGGCGGTTCCAAGCAGTCAGATTGGAGCAATTGGGA-TATGGGATTCTAATGCTTATCTTGCCTATATT-CGCCCTACTGTATAAAGCATTC-CTTCATTACCCGCTTTTTTGCA-TTTT--TTTCACCATGTA-------------------------T--ATTT-----CTTT-ATT-----ATGTC-----TAACCTAAACCAAGCATTCCAGGTG----CATCTGTCTGGATAGTCGGATCTTCAATTCCTTATTGGGCCGAGTTAGCAGCA-CAG-CAT-AGACC---GTGG-GGGTCTC-A-CCTCAGCCTGCGAGCAAAGATTACTTGGAACGGTATTCGGGGCTTGAAGTGGGACC-A----AG---------TGGAAAA---CAT-TA----T----CACTAACATGGTTAAAAA---TCC--CCCCACCTGA-TATTATT-CTGTTTCATGTCCGATCTAATGACCTTACGTCCTCCAAC----CTTAGT----T----CAAAATCCCTTGCCATC-AGCATA-----CAATGCATATTGTACAG----ATACAATGCTTTGTGGCCAAA---AACCAAGCTTATTTAATCAGG-ATTACTTG-CTAGACGCTATTGGCA-C----T---GTCCAGCCCTTG--GCGAT-GGGCCCAAAATTAAC---AAAAGA-CGT-TTGAGGTTAAACAACCTAATGCAAAAGTCCATGGCCACAGTCCACAGAGGTCTCATGTTTCTACATTTATCACGATCAAAATATCAAAATCTCAGAAATTCAATTATT------------CCGTCAAGACGGCTCTCACCTCTATCCGATTTAGGCAATCA-GTTCTTTCTCAATAATCTTCAGGCAGGGTTACGATCTGTCTTGGTGCCA-AGTATTCATCAGTGACACTTTCAATATCCCATCCCTTTGTTTGTTG
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ttaaaggtacCAGGTG----CGACTATCTA-----TCGGAGCATTCATACCTTGCTGGTCCGGAATGGCTGCA-TAG-CAG-AGACC---G-GG-GG
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTGTTTTG---CAAAAAtgg
gi|4                          : ttcaccacccttgtgtcccgccatatgtgggacattaagaagtgtcaaggctctcgcacaactcgttatcaaccaatacacctacgccaccgcattacagccgttcaacatttttcgcacccagtatggattacctcaatcttagcctgccccagtagatcagctgttacactttctagcctacttgcatattcgggatggctcttttgcaacagcccagctatatattaatccaatttcccattttcataaacttaagggtcattcagacacaacaaaaatttacacactctccaaacccctagaaggcatccgaagatctgcagatcctagcaaggaccttagaatcccaatctcgcagcagcttctcgctaaacttatccaagttttaccaatcaattgtcgatctccctatgaatcagccctgtttacagcttcatactgcttagcttattttgggttacttagattagcgaagttttacatctccaggtatttgaccttcatttgcaagcatccggtcacatctttcccactattactaagtccaaaatggaccagatagggcggtccaccattgtcaaaatcaacaaccaaaatcatggtactttctgtcctgtacatctggtcaggacctacctcaaactcagttctagcaacacaagtactttagccatacatattgatggtAGGTCATTATAGGTCTCATAGCTTCCGTATAGGCATGGCTACTGA-GCT--AGCCAGACAGGGGGTTCAAAGCAGTCAGATTAAAGCAATGGGGA-GATGGAATTCAAATGTTTATCTTACCTACATT-CGCCATACTGTTTAAATTTGTC-CTATATCAGTTGTACCTTTGTA-CT---CATTCATCATATATATACATGTA------TGTGCAAT-TTAATTTTTTTTCTTTAATT-G--TATGTC-----TAACCAAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTTGGAGCACCCATCCCTTATTGGGCCAGGGTGGCAGCA-CAG-CAT-AGACC---G-GG-GGCTCACA--CTTCAACCTGCCAGCAAGGAGGACTTGAAATGGTATTCCGCGCTTAATGTGGGACC-A------AG-------TGGAAAA---GAT-TA----T----CACTAACATGGTCAAAAA---TTCA-CCCCACCTGAGT-TTCTT-CTGTTTC-----GGATCTAATGACCTTACGTTCTCCGAC-T---TTAGT----T----CAAAATCCCTCGCCAAC-AACAT-----CCAATGCACACTATACAG----ATACAATGCTCTGTGGCCAAA---AACTAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCTATTGGCG-C------C-ACGTAGCCCTTtgcct
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AACAGTTCATGG-------CCACTGAAGTCCCGGGTCTGTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATT------------CATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTacggctaaacagttcatggccactgaagtcccgggtctgtacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatctt
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aggtcattataggtctcatagcttccgtataggcatggctactgagctagccagacagggggttcaaagcagtcagattaaagcaatggggagatggaattcaaatgtttatcttacctacattcgccatactgtttaaatttgtcctatatcagttgtacctttgtactcattcatcatatatatacatgtatgtgcaatttaattttttttctttaattgtatgtctaaccaaaaccaagtattccaggtgcatctatctggatagttggagcacccatcccttattgggccagggtggcagcacagcatagaccgggggctcacacttcaacctgccagcaaggaggacttgaaatggtattccgcgcttaatgtgggaccaagtggaaaagattatcactaacatggtcaaaaattcaccccacctgagtttcttctgtttcggatctaatgaccttacgttctccgactttagttcaaaatccctcgccaacaacatccaatgcacactatacagatacaatgctctgtggccaaaaactaaccttatttggtcaggattacttgctaggcgctattggcgccacgtagcccttacggctaATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGNTCCCTCGCCAAC-AACAT-----CCAATGCACACTGTACAG----ATACAATGCTCTGTGGCCAAA---AACCAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCCATCGTCA-C------C-ACGTAGCCCTTntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       attcacctattcaatttagacaatcacgtttttctcagtaatcttcAACAGTTCATGG-------CCACAGAAGTCCCGGGTTTATACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATT------------CATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACAATCATTCTTGGT-CCAGAGTATTCCTCAGTGACCCATT-AATACCCCacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        attcacctattcaatttagacaatcacgtttttctcagtaatcttcagntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaCCCGATG----TGTATATCTGGATAATCG-----TCTATATTTTATTTG-CCGGGTTAGCGGCA-CAG-CAT-AGACC---G-GGCGGCTCACA--CCTCAACCTGTCAGCAAGGATCACTTGGAATGATATTCGGGGCTTGAAGGGGGATC-A-A------------ATAGAAGA---GAC-CA----T----CACAAACATGGTCAACAAGCTTCCTTCCCCGCCTAAGT-TCCTT-CGGTTTCATGTTGGATTTAATAAACTTACGTCCTCTGA----GATTA---AT-T----CAAAATCCTTCGCCAAC--------------ATGTACACTATACAGATCTATATAATGCACTGTGCCCAA----AACTAAGCTTATCTGTTCGGG-ATTACTTG-CTAGGCGCTATTGGCA-CGATGT-T-TCTC---------TGGGATGGGCCCCAAAATCAGC---AAAAAtgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGTTGGCAGCA-ACG--AC-AAACC---A-GG-TGA-CGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGAC-TCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAG---TAATACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTA-------CAAC-AGAATTAGTCACAT----CAAAA-CAATTTC--AC-AAAATGG---CCTATGCAC-TTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCATT----T-T-GCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAG-CGTACTAGAATTAAA

Unaligned ( gi|5 ): TCCCCACCCTTGTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCATGGCTCTTGCACAACTCCTTGTTAACCAACACACATGCGACCTACGACACCGCATTACAGCAGTTCAAAATTTTCCGCATTCAGTATGCATTGCCTCAATCCTGTCCTGCCTCAGTAGACCAGCTGCTACACTTTCTAGCCTACTTGTCTATTCGGGGTGGCTCGTTTAGAACAGCCCAGCTATTTATTAGTGCAATTTCATGCTTTCATAAACTTATGTGTCATTCAGACACGACAAAAATTTACACTCTCTCCAAAACCTTAGAAGGCATCCGTAGATCCGCAGGTCCTACCAAGTACCTTAGAATCCCAATCTCACTCCAGGTTTTTACCAAACTTATCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTACTGCGTCATTTTGCGTAGCCTATTTTGGGTTTCTTCGAATTGGCGAAGTTTTACACCTCCAGGTATCTGACCTTCAAATGGACGCATCCGGTCACATCTTACTCACCATTACCAAGTCCAAAACGGACCAATTAGGGCGGTCCACCATTGTCAAAATCACCAAGCAAAATCATAGTACTTTCTGTCCTGTACATATGGTCAGAACCTTCCTCAAACTTGTATCTAGCAA
Unaligned ( gi|6 ): TTCCCACCCCTTTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCAAGCCTCTTGCACAACTCCTTGTCAACTAACACACATGTCACCTACGACACCACATTACAACAGTTCAATAATTTTTGCATTCAGTATGGATTGTCTCAATCCTGTCCTGCCCCAGTAGATCAGCTGCTACATTTTCTCACCTACTTGTCTATTCGGTGTGGCTCGTTTAGAACAAGCCAGCTATATATTAATGCAATTTCATATTTTCATAAACTTAAGTGGCATTCAGACTCGACAAAAATTTACACTGTCTCCGAAACTTTAGAAGGCATCCATAGATCCGCAGGTCCTACCAAGGACCTTAGAATCCCAATCTCACTCCAGCTTTTAACCAAACTTAGCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTTCTGCGTCATTTTGCTTAGCCTATTTTTCGGTTACTTTGAATTAGCGAAGTTGTACACAGGTATCCGACCTTCAATTGATGCATCCAAAACAGACCAATTAGGGCGGTCCACC
Unaligned ( gi|12 ): ATAATTACAGGGCATGCACGATTCAACCAAATCCTTCATTGTCACCAAACCCCTTGAGGGTTGCGCAGATCGGTGGGTTAACAAGGATATCCGTGCCCTATATCCTACCAACTTTTTCCACCGAATTATCACAGCCCTGCCTAATGTATGTAGGTCCCCATATGAAGCTGCATTTTTTTAGCAGCATTTACCATTACTTACTATGGCCTGCTCAGAGTTACCGAAACACTTGCACTCATGCACTCGGACCTGACTATTGTACATGAGCTTATGCCAGATTATTATACAAAAGTCAAAACTGACCAGATAGGTAGCTCCA
Unaligned ( gi|17 ): AGTTCCTAAGTCCAACACTATCAGTCAACCTCTGTCAAAATCAATAATGAAAAACACTTTCTGTCCAGTGGACTTGTTTATGACTTACCCCAGACTAAGACTTCACATTTCGAGCACACTATGGCTACTGGTGCACATCATGGCAAACCTATTACGCAGTCCTAATTCCTAGCCATTCTGAAAAATATGCTTT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                111                                                                      4444444444444                                            1          1                     1             2222222222        333333333333333333333           999999999999999999999999999999999999999999999999999     22222                         1111                                                                                   11               1111                                       7777777777777777777777777777777777777            111         11    222222222    11                              33333333333333     2222                           22222                                          2222    111              1        1                 44444444444444          222               111                                             3333333                                                                    55555555555555555555555555555555                    1   1                                         1   1                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                444    0               1   1 1                       1       33          6666666666666 0  33       8   1         1      2    0    0     1    0            0 1  0   0         2   2222222222  33    333333333333333333333       1   444444444444444444444444444444444444444444444444444     00000     1                   0000           0 0  0     3  0  2               1    1  44   99 44     99999  4  66 4  11   1           4444     0     3  1         5 1  0       4 0000000000000000000000000000000000000  1   0   0 333   777   66    888888888  0 11         6 2  1  1  0         77777777777777     6666 888     7 11  1 2   4  2  55555  2      2    66  9999  1 1       1       2222    555       1      5  9     5    4     0      33333333333333    99    555  1            111       8  3     3      1           1         2222222           0     1 1                   3       1   2 0              88888888888888888888888888888888    3               0   6              0             0            3   3       3       6     6              1         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ...    .               .   . .                       .       ..          ............. .  ..       .   .         .      .    .    .     .    .            . .  .   .         .   ..........  ..    .....................       .   ...................................................     .....     .                   ....           . .  .     .  .  .               .    .  ..   .. ..     .....  .  .. .  ..   .           ....     .     .  .         . .  .       . .....................................  .   .   . ...   ...   ..    .........  . ..         . .  .  .  .         ..............     .... ...     . ..  . .   .  .  .....  .      .    ..  ....  . .       .       ....    ...       .      .  .     .    .     .      ..............    ..    ...  .            ...       .  .     .      .           .         .......           .     . .                   .       .   . .              ................................    .               .   .              .             .            .   .       .       .     .              .         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                000    8               0   0 0                       2       22          5555555555555 2  88       8   0         0      5    2    0     2    8            2 0  2   0         5   5555555555  88    000000000000000000000       0   555555555555555555555555555555555555555555555555555     00000     0                   6666           1 5  2     4  2  4               0    0  99   55 66     00000  0  33 7  88   0           3333     5     9  0         4 0  9       4 0000000000000000000000000000000000000  1   9   1 333   888   77    777777777  9 11         7 6  0  0  7         55555555555555     8888 888     3 11  1 9   4  6  77777  3      2    77  4444  0 7       1       4444    000       4      0  4     0    2     8      55555555555555    77    222  0            777       0  8     8      0           0         5555555           2     2 0                   2       0   5 8              22222222222222222222222222222222    8               0   0              8             7            3   3       7       7     7              0         
consensus                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGA-GCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CCGCACTTTTGTA--TTTTCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T-CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCAC-T---CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCAC----TC-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAACNACCTAATGCAANAGTTCATGG-------CCACAGAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATTC------------ATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
Reference ( family-2418 )     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGA-GCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CCGCACTTTTGTA--TTTTCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T-CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCACAT---CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCAC----TC-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAACNACCTAATGCAANAGTTCATGG-------CCACAGAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATTC------------ATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCAACGCTTCC----AGGCAAGG-------------------GGAGGGG--TCGAAGCAGTCATATTAAAGCAATGGGGA-GATGGAATGCCCATGCTTATCTTGCATAAATT-CACCCTACCGTATAA-------------TCA-CT--ATTTTGGTAATTTTTCTTTCACCTTGTATATATGTTCA------ATTTCA--------TT-----CCTTA--T----CATGCC-----TAACCTAAACCAAGTATTCCAGGTG----CATCTGTCTGG-TAGTCGGATC--------CTTATTGGGCCGGGTTAGTAGC--CAG-CAT-AGACC---A-GG-GGCTCTCG--CCTCAACCTGCCAGCAA--ATCACTTGGAACGGTATTTGGGGCTTAAAGTGGGACC-A------AGGAACCCATA-------------A----T-CACGGACATGGTCAAACA---TTCATCCCCACGTGA-TATTCTT-CTGTTTCAT-TCGGATCAAATGGCCTTACGTCCTCCGAC-C---TCAGT----T---TAAAATTCATCGCCAAC-AACAT-----CCAATGCACACTGTTAAG----ATACCATGCTCAGTGGCCAAAT----CCAAGCTTGTTTGGTCCGGC-TTACTTGC-TAG-CGCTATTGGCAC----TAAGC--AGCCCTT--TGCGAT-GGACCCAAACGTAGCCAAAAAAAGCCGCGCGAGG-TTAAACCACCTAATGCAAAAGTTCATTG-------CCACAGAGGTCGCGGGTATCTATATAGATCATGATCACA---TCCAAACCTCACAAATTAAATTATTCCATCAAGATGGCACTC------GC--------CTAT-CTATTTAGACAATCA-GTTATTTCTCAATAATCT-CGGGAAGGGTTACAATCAGTCTTGGT-CCA-AGATTTCGTCAGTGA-CCTTTCAATATCCCATTCCTGTGTTTGTTG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGGTGGCAGCA-ACG--AC-AAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGTTG-TCACCTGGAAAGGAGTGCGGGGACCAGA-TGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATACAGAAATATTTT----AA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTC--AC-AAAATGG---CCTATGCACTTTGTT-AG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAActtcttaacccatagctgtattgatttggggaaactttaacatacctaatttgttgtggaggtcactgtgccaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            catactggggggggTGGCAGCAACAG-GACCAAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGGACTCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAACTTAGT-AA----TACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTTACTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTTCA-C-AAAATGG---CCTATGCACTTTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        g----CATCCATCTGGATTGTGGGATAATGCATTCCCTATTGGGCTTGTATCGCTGT--CAGACAG-AAACC---A-GG-GGCAC-TAA-CATGAACACCCGAGCGTCCATTTCCTGGAATGGAATTCGAGGAGTCAAATGGGAGC-AGG-TTGAACCAGCCTT---------GATGTA----G-CAAAAA---GACTGAA-----------CCCGCCAGA-T-ATGTTAGTTTTTCATGCGGGGTCTAATGACCTCA------CTGATGAGGGC--GTCACTTGTACATATTTTTTTTTTTACAAAGATGGCCCCCAATGTACATTGTGTAG----GTTTAATGCTCTTTGGCCCAATACGA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   caGTCATTTTAGATCCACTAGTTATCGCATTGGCATTGACACCAA-ATT--AACCAAACTTGGGTTTTTACACAATTACATTAAA-CAAAAGGGATGGTGGTAGTC-AATTCTTATCTTTCATACACTATAACCTAGC-TAT---TTTGTCACTACATCA-ACACACT----TA------CTTTCACTCAGT---TACATTAAAGAAGCTTTTCAACGT--ATTT-----GTTAAATTCGGCCATGCCACTAGTAACTCTAATTAAGCATTCCA--TGACCTTATCTATCTGGATTGTGGGCTAATCTATTACGTATTGGGCTGGAATAGCTG-G-CAG--AT-AGAaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTATTTTGAAAAAAAAAAAATGTCTCACCTGATTAAAGGTACC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                      ggttactttgaattagtgaagttgtacacaggtatctgaccttcaattgatgcatccggtcacatcttactcaccattaccaaatccaaaacagaccaattagggcggtccaccatattcaaaatcaccaagcaaaacgatagtactatctgtcctgtacatctgatcaggaccttcgtcaaactcgtatctaacaacacaagtaccttacttacacatgtcaatggcCAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCAC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aaatatcgattcgatacatccagttacatcttactcaccattaccaagtccaaaaacggaccaattaggccggtccaacactgtcaaaatcaccaagtaaaatcttagtacttctggtcaggaccttcctcaaactcgtatctaacaacacaagtaccttacttgcacatatcgatgaAACCTGCAAGC----ATCACGTGTGATGGCATTCGGGGCCTTAAGTGGGATCAA-G-TA---CGAA-----GAATA---GAC-CA----T-AACAAACATGGTTAGCAA---TGC--TCCA----GA-C-GTCT---TGTTTCATGTGGATGCGAATGATCTTACATC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTC-----TAATCAAACCCAAGTTTTCTAGGCA----CAACTATTTGGATAATTGGATCATCCATTCCTTACTGGGCGGGGCTGGTTGCA-CAG-CAG-AGACCAGGG-GG-AGGGGGCAATTCTTAACCTACCTACTAGGATCACTTGGAACGGCATCCGtcatatttcgtccaatgttttcactaacatggtacaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNAAACCAATTACCCGCTTTCAATTTCATTCTATTTTG---AAAA-AAAATGTCTCACCTGATTAAAGGTACCAGGTCATTACAGGTCTCACAGCTTCCGTATAGGCATGGCTA---ATGCTTCAGCCCAGCAGGCGGTTCCAAGCAGTCAGATTGGAGCAATTGGGA-TATGGGATTCTAATGCTTATCTTGCCTATATT-CGCCCTACTGTATAAAGCATTC-CTTCATTACCCGCTTTTTTGCA--TTTT-TTTCACCATGTA-------------------------T--ATTT-----CTTT-ATT-----ATGTC-----TAACCTAAACCAAGCATTCCAGGTG----CATCTGTCTGGATAGTCGGATCTTCAATTCCTTATTGGGCCGAGTTAGCAGCA-CAG-CAT-AGACC---GTGG-GGGTCTC-A-CCTCAGCCTGCGAGCAAAGATTACTTGGAACGGTATTCGGGGCTTGAAGTGGGACC-A----AG---------TGGAAAA---CAT-TA----T-CACTAACATGGTTAAAAA---TCC--CCCCACCTGA-TATTATT-CTGTTTCATGTCCGATCTAATGACCTTACGTCCTCCAAC----CTTAGT----T---CAAAATCCCTTGCCATC-AGCATA-----CAATGCATATTGTACAG----ATACAATGCTTTGTGGCCAAA---AACCAAGCTTATTTAATCAGG-ATTACTTG-CTAGACGCTATTGGCAC----T--GTCCAGCCCTTG--GCGAT-GGGCCCAAAATTAAC---AAAAGAC-GT-TTGAGGTTAAACAACCTAATGCAAAAGTCCATGGCCACAGTCCACAGAGGTCTCATGTTTCTACATTTATCACGATCAAAATATCAAAATCTCAGAAATTCAATTATTC------------CGTCAAGACGGCTCTCACCTCTATCCGATTTAGGCAATCA-GTTCTTTCTCAATAATCTTCAGGCAGGGTTACGATCTGTCTTGGTGCCA-AGTATTCATCAGTGACACTTTCAATATCCCATCCCTTTGTTTGTTG
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ttaaaggtacCAGGTG----CGACTATCTA-----TCGGAGCATTCATACCTTGCTGGTCCGGAATGGCTGCA-TAG-CAG-AGACC---G-GG-GG
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTGTTTTG---CAAAAAtgg
gi|4                          : ttcaccacccttgtgtcccgccatatgtgggacattaagaagtgtcaaggctctcgcacaactcgttatcaaccaatacacctacgccaccgcattacagccgttcaacatttttcgcacccagtatggattacctcaatcttagcctgccccagtagatcagctgttacactttctagcctacttgcatattcgggatggctcttttgcaacagcccagctatatattaatccaatttcccattttcataaacttaagggtcattcagacacaacaaaaatttacacactctccaaacccctagaaggcatccgaagatctgcagatcctagcaaggaccttagaatcccaatctcgcagcagcttctcgctaaacttatccaagttttaccaatcaattgtcgatctccctatgaatcagccctgtttacagcttcatactgcttagcttattttgggttacttagattagcgaagttttacatctccaggtatttgaccttcatttgcaagcatccggtcacatctttcccactattactaagtccaaaatggaccagatagggcggtccaccattgtcaaaatcaacaaccaaaatcatggtactttctgtcctgtacatctggtcaggacctacctcaaactcagttctagcaacacaagtactttagccatacatattgatggtAGGTCATTATAGGTCTCATAGCTTCCGTATAGGCATGGCTACTGA-GCT--AGCCAGACAGGGGGTTCAAAGCAGTCAGATTAAAGCAATGGGGA-GATGGAATTCAAATGTTTATCTTACCTACATT-CGCCATACTGTTTAAATTTGTC-CTATATCAGTTGTACCTTTGTA--CT--CATTCATCATATATATACATGTA------TGTGCAAT-TTAATTTTTTTTCTTTAATT-G--TATGTC-----TAACCAAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTTGGAGCACCCATCCCTTATTGGGCCAGGGTGGCAGCA-CAG-CAT-AGACC---G-GG-GGCTCACA--CTTCAACCTGCCAGCAAGGAGGACTTGAAATGGTATTCCGCGCTTAATGTGGGACC-A------AG-------TGGAAAA---GAT-TA----T-CACTAACATGGTCAAAAA---TTCA-CCCCACCTGAGT-TTCTT-CTGTTTC-----GGATCTAATGACCTTACGTTCTCCGAC-T---TTAGT----T---CAAAATCCCTCGCCAAC-AACAT-----CCAATGCACACTATACAG----ATACAATGCTCTGTGGCCAAA---AACTAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCTATTGGCGC-----C-ACGTAGCCCTTtgcct
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AACAGTTCATGG-------CCACTGAAGTCCCGGGTCTGTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTacggctaaacagttcatggccactgaagtcccgggtctgtacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatctt
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aggtcattataggtctcatagcttccgtataggcatggctactgagctagccagacagggggttcaaagcagtcagattaaagcaatggggagatggaattcaaatgtttatcttacctacattcgccatactgtttaaatttgtcctatatcagttgtacctttgtactcattcatcatatatatacatgtatgtgcaatttaattttttttctttaattgtatgtctaaccaaaaccaagtattccaggtgcatctatctggatagttggagcacccatcccttattgggccagggtggcagcacagcatagaccgggggctcacacttcaacctgccagcaaggaggacttgaaatggtattccgcgcttaatgtgggaccaagtggaaaagattatcactaacatggtcaaaaattcaccccacctgagtttcttctgtttcggatctaatgaccttacgttctccgactttagttcaaaatccctcgccaacaacatccaatgcacactatacagatacaatgctctgtggccaaaaactaaccttatttggtcaggattacttgctaggcgctattggcgccacgtagcccttacggcta------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGNTCCCTCGCCAAC-AACAT-----CCAATGCACACTGTACAG----ATACAATGCTCTGTGGCCAAA---AACCAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCCATCGTCAC-----C-ACGTAGCCCTTntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 attcacctattcaatttagacaatcacgtttttctcagtaatcttcAACAGTTCATGG-------CCACAGAAGTCCCGGGTTTATACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACAATCATTCTTGGT-CCAGAGTATTCCTCAGTGACCCATT-AATACCCCacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        attcacctattcaatttagacaatcacgtttttctcagtaatcttcagntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaCCCGATG----TGTATATCTGGATAATCG-----TCTATATTTTATTTG-CCGGGTTAGCGGCA-CAG-CAT-AGACC---G-GGCGGCTCACA--CCTCAACCTGTCAGCAAGGATCACTTGGAATGATATTCGGGGCTTGAAGGGGGATC-A-A------------ATAGAAGA---GAC-CA----T-CACAAACATGGTCAACAAGCTTCCTTCCCCGCCTAAGT-TCCTT-CGGTTTCATGTTGGATTTAATAAACTTACGTCCTCTGA----GATTAAT----T---CAAAATCCTTCGCCAAC--------------ATGTACACTATACAGATCTATATAATGCACTGTGCCCAA----AACTAAGCTTATCTGTTCGGG-ATTACTTG-CTAGGCGCTATTGGCACGATGTT-TCTC---------TGGGATGGGCCCCAAAATCAGC---AAAAAtgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGTTGGCAGCA-ACG--AC-AAACC---A-GG-TGA-CGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGAC-TCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTC--AC-AAAATGG---CCTATGCAC-TTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAA

Unaligned ( gi|5 ): TCCCCACCCTTGTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCATGGCTCTTGCACAACTCCTTGTTAACCAACACACATGCGACCTACGACACCGCATTACAGCAGTTCAAAATTTTCCGCATTCAGTATGCATTGCCTCAATCCTGTCCTGCCTCAGTAGACCAGCTGCTACACTTTCTAGCCTACTTGTCTATTCGGGGTGGCTCGTTTAGAACAGCCCAGCTATTTATTAGTGCAATTTCATGCTTTCATAAACTTATGTGTCATTCAGACACGACAAAAATTTACACTCTCTCCAAAACCTTAGAAGGCATCCGTAGATCCGCAGGTCCTACCAAGTACCTTAGAATCCCAATCTCACTCCAGGTTTTTACCAAACTTATCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTACTGCGTCATTTTGCGTAGCCTATTTTGGGTTTCTTCGAATTGGCGAAGTTTTACACCTCCAGGTATCTGACCTTCAAATGGACGCATCCGGTCACATCTTACTCACCATTACCAAGTCCAAAACGGACCAATTAGGGCGGTCCACCATTGTCAAAATCACCAAGCAAAATCATAGTACTTTCTGTCCTGTACATATGGTCAGAACCTTCCTCAAACTTGTATCTAGCAA
Unaligned ( gi|6 ): TTCCCACCCCTTTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCAAGCCTCTTGCACAACTCCTTGTCAACTAACACACATGTCACCTACGACACCACATTACAACAGTTCAATAATTTTTGCATTCAGTATGGATTGTCTCAATCCTGTCCTGCCCCAGTAGATCAGCTGCTACATTTTCTCACCTACTTGTCTATTCGGTGTGGCTCGTTTAGAACAAGCCAGCTATATATTAATGCAATTTCATATTTTCATAAACTTAAGTGGCATTCAGACTCGACAAAAATTTACACTGTCTCCGAAACTTTAGAAGGCATCCATAGATCCGCAGGTCCTACCAAGGACCTTAGAATCCCAATCTCACTCCAGCTTTTAACCAAACTTAGCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTTCTGCGTCATTTTGCTTAGCCTATTTTTCGGTTACTTTGAATTAGCGAAGTTGTACACAGGTATCCGACCTTCAATTGATGCATCCAAAACAGACCAATTAGGGCGGTCCACC
Unaligned ( gi|12 ): ATAATTACAGGGCATGCACGATTCAACCAAATCCTTCATTGTCACCAAACCCCTTGAGGGTTGCGCAGATCGGTGGGTTAACAAGGATATCCGTGCCCTATATCCTACCAACTTTTTCCACCGAATTATCACAGCCCTGCCTAATGTATGTAGGTCCCCATATGAAGCTGCATTTTTTTAGCAGCATTTACCATTACTTACTATGGCCTGCTCAGAGTTACCGAAACACTTGCACTCATGCACTCGGACCTGACTATTGTACATGAGCTTATGCCAGATTATTATACAAAAGTCAAAACTGACCAGATAGGTAGCTCCA
Unaligned ( gi|17 ): AGTTCCTAAGTCCAACACTATCAGTCAACCTCTGTCAAAATCAATAATGAAAAACACTTTCTGTCCAGTGGACTTGTTTATGACTTACCCCAGACTAAGACTTCACATTTCGAGCACACTATGGCTACTGGTGCACATCATGGCAAACCTATTACGCAGTCCTAATTCCTAGCCATTCTGAAAAATATGCTTT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       11111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                111                                                                      444444444444                                            1          1                     1             2222222222        3333333333333333333333               00000000000000000000000000000000000000000000000     22222                                                                                                              11               1111                                       7777777777777777777777777777777777777            111         11    222222222    11                              4444444444444444444444444444                       22222                                          2222    111              1        11                44444444444444          222               111                                                   3333333                                                              55555555555555555555555555555555                    1   1                                         1   1                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                444        3           1   1 1                       1       33          000000000000 0  33       8   1         1      2    0    0     1    0            0 1  0   0         2   2222222222  33    3333333333333333333333       1   3   66666666666666666666666666666666666666666666666     00000     1                    66          0 0  0     3  0  2               1    1  44   99 44     99999  4  66 4  77   1           4444     0     3  1         5 1  0       4 0000000000000000000000000000000000000  1   0   0 333   777   66    888888888  0 11         6 2  1  1  0         3333333333333333333333333333     7 11  1 2   4  2  55555  2      2    66  9999  1 1       1       2222    555       1      5  9     11   4     0      33333333333333    99    555  1            111       8  3     3      1           1               2222222     0     1 1                   3       1   2 0              88888888888888888888888888888888    3               0   6              0             0            3   3       3       6     6              1         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ...        .           .   . .                       .       ..          ............ .  ..       .   .         .      .    .    .     .    .            . .  .   .         .   ..........  ..    ......................       .   .   ...............................................     .....     .                    ..          . .  .     .  .  .               .    .  ..   .. ..     .....  .  .. .  ..   .           ....     .     .  .         . .  .       . .....................................  .   .   . ...   ...   ..    .........  . ..         . .  .  .  .         ............................     . ..  . .   .  .  .....  .      .    ..  ....  . .       .       ....    ...       .      .  .     ..   .     .      ..............    ..    ...  .            ...       .  .     .      .           .               .......     .     . .                   .       .   . .              ................................    .               .   .              .             .            .   .       .       .     .              .         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                000        2           0   0 0                       2       22          222222222222 2  88       8   0         0      5    2    0     2    8            2 0  2   0         5   5555555555  88    0000000000000000000000       0   2   22222222222222222222222222222222222222222222222     00000     0                    99          1 5  2     4  2  4               0    0  99   55 66     00000  0  33 7  22   0           3333     5     9  0         4 0  9       4 0000000000000000000000000000000000000  1   9   1 333   888   77    777777777  9 11         7 6  0  0  7         5555555555555555555555555555     3 11  1 9   4  6  77777  3      2    77  4444  0 7       1       4444    000       4      0  4     22   2     8      55555555555555    77    222  0            777       0  8     8      0           0               5555555     2     2 0                   2       0   5 8              22222222222222222222222222222222    8               0   0              8             7            3   3       7       7     7              0         
consensus                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGAGCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CC-GCACTTTTGTA--TTTTCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT--GC-ATGTC-----TAACCNAAACCAAGTATTCCAGGTGC--ATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T-CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCACAT----CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCAC----TC-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAACNACCTAATGCAANAGTTCATGGCCACAG-------AGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATTC------------ATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
Reference ( family-2418 )     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGAGCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CC-GCACTTTTGTA--TTTTCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT--GC-ATGTC-----TAACCNAAACCAAGTATTCCAGGTGC--ATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T-CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCAC-T----CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCAC----TC-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAACNACCTAATGCAANAGTTCATGGCCACAG-------AGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATTC------------ATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCAACGCTTCC----AGGCAAGG------------------GGAGGGG--TCGAAGCAGTCATATTAAAGCAATGGGGA-GATGGAATGCCCATGCTTATCTTGCATAAATT-CACCCTACCGTATAA-------------TCA-CT---ATTTTGGTAATTTTTCTTTCACCTTGTATATATGTTCA------ATTTCA--------TT-----CCTTA--T---C-ATGCC-----TAACCTAAACCAAGTATTCCAGGTGC--ATCTGTCTGG-TAGTCGGATC--------CTTATTGGGCCGGGTTAGTAGC--CAG-CAT-AGACC---A-GG-GGCTCTCG--CCTCAACCTGCCAGCAA--ATCACTTGGAACGGTATTTGGGGCTTAAAGTGGGACC-A------AGGAACCCATA-------------A----T-CACGGACATGGTCAAACA---TTCATCCCCACGTGA-TATTCTT-CTGTTTCAT-TCGGATCAAATGGCCTTACGTCCTCCGAC-C---TCAGT----T----TAAAATTCATCGCCAAC-AACAT-----CCAATGCACACTGTTAAG----ATACCATGCTCAGTGGCCAAAT----CCAAGCTTGTTTGGTCCGGC-TTACTTGC-TAG-CGCTATTGGCAC----TAAGC--AGCCCTT--TGCGAT-GGACCCAAACGTAGCCAAAAAAAGCCGCGCGAGG-TTAAACCACCTAATGCAAAAGTTCATTGCCACAG-------AGGTCGCGGGTATCTATATAGATCATGATCACA---TCCAAACCTCACAAATTAAATTATTCCATCAAGATGGCACTC------GC--------CTAT-CTATTTAGACAATCA-GTTATTTCTCAATAATCT-CGGGAAGGGTTACAATCAGTCTTGGT-CCA-AGATTTCGTCAGTGA-CCTTTCAATATCCCATTCCTGTGTTTGTTG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGGTGGCAGCA-ACG--AC-AAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGTTG-TCACCTGGAAAGGAGTGCGGGGACCAGA-TGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATACAGAAATATTTT----AA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT----CAAAA-CAATTTC--AC-AAAATGG---CCTATGCACTTTGTT-AG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAActtcttaacccatagctgtattgatttggggaaactttaacatacctaatttgttgtggaggtcactgtgccaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          catactggggggggTGGCAGCAACAG-GACCAAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGGACTCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAACTTAGT-AA----TACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTTACTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT----CAAAA-CAATTTTCA-C-AAAATGG---CCTATGCACTTTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gC--ATCCATCTGGATTGTGGGATAATGCATTCCCTATTGGGCTTGTATCGCTGT--CAGACAG-AAACC---A-GG-GGCAC-TAA-CATGAACACCCGAGCGTCCATTTCCTGGAATGGAATTCGAGGAGTCAAATGGGAGC-AGG-TTGAACCAGCCTT---------GATGTA----G-CAAAAA---GACTGAA-----------CCCGCCAGA-T-ATGTTAGTTTTTCATGCGGGGTCTAATGACCTCA------CTGATGAGGGC--GTCAC-TTGTACATATTTTTTTTTTTACAAAGATGGCCCCCAATGTACATTGTGTAG----GTTTAATGCTCTTTGGCCCAATACGA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   caGTCATTTTAGATCCACTAGTTATCGCATTGGCATTGACACCAAATT--AACCAAACTTGGGTTTTTACACAATTACATTAAA-CAAAAGGGATGGTGGTAGTC-AATTCTTATCTTTCATACACTATAACCTAGC-TAT---TTTGTCACTACATCA-AC-ACACTT----A------CTTTCACTCAGT---TACATTAAAGAAGCTTTTCAACGT--ATTT-----GTTAAATTCGGCCATGCCACTAGTAACTCTAATTAAGCATTCCATGACCTTATCTATCTGGATTGTGGGCTAATCTATTACGTATTGGGCTGGAATAGCTG-G-CAG--AT-AGAaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTATTTTGAAAAAAAAAAAATGTCTCACCTGATTAAAGGTACC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                      ggttactttgaattagtgaagttgtacacaggtatctgaccttcaattgatgcatccggtcacatcttactcaccattaccaaatccaaaacagaccaattagggcggtccaccatattcaaaatcaccaagcaaaacgatagtactatctgtcctgtacatctgatcaggaccttcgtcaaactcgtatctaacaacacaagtaccttacttacacatgtcaatggcCAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCAC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aaatatcgattcgatacatccagttacatcttactcaccattaccaagtccaaaaacggaccaattaggccggtccaacactgtcaaaatcaccaagtaaaatcttagtacttctggtcaggaccttcctcaaactcgtatctaacaacacaagtaccttacttgcacatatcgatgaAACCTGCAAGC----ATCACGTGTGATGGCATTCGGGGCCTTAAGTGGGATCAA-G-TA---CGAA-----GAATA---GAC-CA----T-AACAAACATGGTTAGCAA---TGC--TCCA----GA-C-GTCT---TGTTTCATGTGGATGCGAATGATCTTACATC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTC-----TAATCAAACCCAAGTTTTCTAGGCAC--AACTATTTGGATAATTGGATCATCCATTCCTTACTGGGCGGGGCTGGTTGCA-CAG-CAG-AGACCAGGG-GG-AGGGGGCAATTCTTAACCTACCTACTAGGATCACTTGGAACGGCATCCGtcatatttcgtccaatgttttcactaacatggtacaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNAAACCAATTACCCGCTTTCAATTTCATTCTATTTTG---AAAAAAAA-TGTCTCACCTGATTAAAGGTACCAGGTCATTACAGGTCTCACAGCTTCCGTATAGGCATGGCTAATG--CTTCAGCCCAGCAGGCGGTTCCAAGCAGTCAGATTGGAGCAATTGGGA-TATGGGATTCTAATGCTTATCTTGCCTATATT-CGCCCTACTGTATAAAGCATTC-CTTCATTA-CCCGCTTTTTTGCA--TTTT-TTTCACCATGTATAT---------------------------TT-----CTTTA-TT-----ATGTC-----TAACCTAAACCAAGCATTCCAGGTGC--ATCTGTCTGGATAGTCGGATCTTCAATTCCTTATTGGGCCGAGTTAGCAGCA-CAG-CAT-AGACC---GTGG-GGGTCTCA--CCTCAGCCTGCGAGCAAAGATTACTTGGAACGGTATTCGGGGCTTGAAGTGGGACC-A------AG-------TGGAAAA---CAT-TA----T-CACTAACATGGTTAAAAA---TCC--CCCCACCTGA-TATTATT-CTGTTTCATGTCCGATCTAATGACCTTACGTCCTCCAAC-C---TTAGT----T----CAAAATCCCTTGCCATC-AGCATA-----CAATGCATATTGTACAG----ATACAATGCTTTGTGGCCAAA---AACCAAGCTTATTTAATCAGG-ATTACTTGC-TAGACGCTATTGGCAC----T--GTCCAGCCCTTG--GCGAT-GGGCCCAAAATTAAC---AAAAGAC-GT-TTGAGGTTAAACAACCTAATGCAAAAGTCCATGGCCACAGTCCACAGAGGTCTCATGTTTCTACATTTATCACGATCAAAATATCAAAATCTCAGAAATTCAATTATTC------------CGTCAAGACGGCTCTCACCTCTATCCGATTTAGGCAATCA-GTTCTTTCTCAATAATCTTCAGGCAGGGTTACGATCTGTCTTGGTGCCA-AGTATTCATCAGTGACACTTTCAATATCCCATCCCTTTGTTTGTTG
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ttaaaggtacCAGGTGC--GACTATCTA-----TCGGAGCATTCATACCTTGCTGGTCCGGAATGGCTGCA-TAG-CAG-AGACC---G-GG-GG
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTGTTTTG---CAAAAAtgg
gi|4                          : ttcaccacccttgtgtcccgccatatgtgggacattaagaagtgtcaaggctctcgcacaactcgttatcaaccaatacacctacgccaccgcattacagccgttcaacatttttcgcacccagtatggattacctcaatcttagcctgccccagtagatcagctgttacactttctagcctacttgcatattcgggatggctcttttgcaacagcccagctatatattaatccaatttcccattttcataaacttaagggtcattcagacacaacaaaaatttacacactctccaaacccctagaaggcatccgaagatctgcagatcctagcaaggaccttagaatcccaatctcgcagcagcttctcgctaaacttatccaagttttaccaatcaattgtcgatctccctatgaatcagccctgtttacagcttcatactgcttagcttattttgggttacttagattagcgaagttttacatctccaggtatttgaccttcatttgcaagcatccggtcacatctttcccactattactaagtccaaaatggaccagatagggcggtccaccattgtcaaaatcaacaaccaaaatcatggtactttctgtcctgtacatctggtcaggacctacctcaaactcagttctagcaacacaagtactttagccatacatattgatggtAGGTCATTATAGGTCTCATAGCTTCCGTATAGGCATGGCTACTGAGCT--AGCCAGACAGGGGGTTCAAAGCAGTCAGATTAAAGCAATGGGGA-GATGGAATTCAAATGTTTATCTTACCTACATT-CGCCATACTGTTTAAATTTGTC-CTATATCAGTT-GTACCTTTGTA--CT--CATTCATCATATATATACATGTA------TGTGCAAT-TTAATTTTTTTTCTTTAATT--GT-ATGTC-----TAACCAAAACCAAGTATTCCAGGTGC--ATCTATCTGGATAGTTGGAGCACCCATCCCTTATTGGGCCAGGGTGGCAGCA-CAG-CAT-AGACC---G-GG-GGCTCACA--CTTCAACCTGCCAGCAAGGAGGACTTGAAATGGTATTCCGCGCTTAATGTGGGACC-A------AG-------TGGAAAA---GAT-TA----T-CACTAACATGGTCAAAAA---TTCA-CCCCACCTGAGT-TTCTT-CTGTTTC-----GGATCTAATGACCTTACGTTCTCCGAC-T---TTAGT----T----CAAAATCCCTCGCCAAC-AACAT-----CCAATGCACACTATACAG----ATACAATGCTCTGTGGCCAAA---AACTAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCTATTGGCGC-----C-ACGTAGCCCTTtgcct
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACAGTTCATGGCCACTG-------AAGTCCCGGGTCTGTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTacggctaaacagttcatggccactgaagtcccgggtctgtacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatctt
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aggtcattataggtctcatagcttccgtataggcatggctactgagctagccagacagggggttcaaagcagtcagattaaagcaatggggagatggaattcaaatgtttatcttacctacattcgccatactgtttaaatttgtcctatatcagttgtacctttgtactcattcatcatatatatacatgtatgtgcaatttaattttttttctttaattgtatgtctaaccaaaaccaagtattccaggtgcatctatctggatagttggagcacccatcccttattgggccagggtggcagcacagcatagaccgggggctcacacttcaacctgccagcaaggaggacttgaaatggtattccgcgcttaatgtgggaccaagtggaaaagattatcactaacatggtcaaaaattcaccccacctgagtttcttctgtttcggatctaatgaccttacgttctccgactttagttcaaaatccctcgccaacaacatccaatgcacactatacagatacaatgctctgtggccaaaaactaaccttatttggtcaggattacttgctaggcgctattggcgccacgtagcccttacggcta------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGNTCCCTCGCCAAC-AACAT-----CCAATGCACACTGTACAG----ATACAATGCTCTGTGGCCAAA---AACCAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCCATCGTCAC-----C-ACGTAGCCCTTntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                attcacctattcaatttagacaatcacgtttttctcagtaatcttcAACAGTTCATGGCCACAG-------AAGTCCCGGGTTTATACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACAATCATTCTTGGT-CCAGAGTATTCCTCAGTGACCCATT-AATACCCCacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        attcacctattcaatttagacaatcacgtttttctcagtaatcttcagntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaCCCGATGT--GTATATCTGGATAATCG-----TCTATATTTTATTTG-CCGGGTTAGCGGCA-CAG-CAT-AGACC---G-GGCGGCTCACA--CCTCAACCTGTCAGCAAGGATCACTTGGAATGATATTCGGGGCTTGAAGGGGGATC-A-A------------ATAGAAGA---GAC-CA----T-CACAAACATGGTCAACAAGCTTCCTTCCCCGCCTAAGT-TCCTT-CGGTTTCATGTTGGATTTAATAAACTTACGTCCTCTGA----GATTA---AT-T----CAAAATCCTTCGCCAAC--------------ATGTACACTATACAGATCTATATAATGCACTGTGCCCAA----AACTAAGCTTATCTGTTCGGG-ATTACTTG-CTAGGCGCTATTGGCACGATGTT-TCTC---------TGGGATGGGCCCCAAAATCAGC---AAAAAtgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGTTGGCAGCA-ACG--AC-AAACC---A-GG-TGA-CGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGAC-TCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT----CAAAA-CAATTTC--AC-AAAATGG---CCTATGCAC-TTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAA

Unaligned ( gi|5 ): TCCCCACCCTTGTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCATGGCTCTTGCACAACTCCTTGTTAACCAACACACATGCGACCTACGACACCGCATTACAGCAGTTCAAAATTTTCCGCATTCAGTATGCATTGCCTCAATCCTGTCCTGCCTCAGTAGACCAGCTGCTACACTTTCTAGCCTACTTGTCTATTCGGGGTGGCTCGTTTAGAACAGCCCAGCTATTTATTAGTGCAATTTCATGCTTTCATAAACTTATGTGTCATTCAGACACGACAAAAATTTACACTCTCTCCAAAACCTTAGAAGGCATCCGTAGATCCGCAGGTCCTACCAAGTACCTTAGAATCCCAATCTCACTCCAGGTTTTTACCAAACTTATCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTACTGCGTCATTTTGCGTAGCCTATTTTGGGTTTCTTCGAATTGGCGAAGTTTTACACCTCCAGGTATCTGACCTTCAAATGGACGCATCCGGTCACATCTTACTCACCATTACCAAGTCCAAAACGGACCAATTAGGGCGGTCCACCATTGTCAAAATCACCAAGCAAAATCATAGTACTTTCTGTCCTGTACATATGGTCAGAACCTTCCTCAAACTTGTATCTAGCAA
Unaligned ( gi|6 ): TTCCCACCCCTTTGCCCCGCCATCTGTGGGACATTTAGCAGACGAAGCGTCAAGCCTCTTGCACAACTCCTTGTCAACTAACACACATGTCACCTACGACACCACATTACAACAGTTCAATAATTTTTGCATTCAGTATGGATTGTCTCAATCCTGTCCTGCCCCAGTAGATCAGCTGCTACATTTTCTCACCTACTTGTCTATTCGGTGTGGCTCGTTTAGAACAAGCCAGCTATATATTAATGCAATTTCATATTTTCATAAACTTAAGTGGCATTCAGACTCGACAAAAATTTACACTGTCTCCGAAACTTTAGAAGGCATCCATAGATCCGCAGGTCCTACCAAGGACCTTAGAATCCCAATCTCACTCCAGCTTTTAACCAAACTTAGCCAAGTTTTACCAGTCGTTTGTCGATCTCCCTATGAATCAGCCCTGTTTTCTGCGTCATTTTGCTTAGCCTATTTTTCGGTTACTTTGAATTAGCGAAGTTGTACACAGGTATCCGACCTTCAATTGATGCATCCAAAACAGACCAATTAGGGCGGTCCACC
Unaligned ( gi|12 ): ATAATTACAGGGCATGCACGATTCAACCAAATCCTTCATTGTCACCAAACCCCTTGAGGGTTGCGCAGATCGGTGGGTTAACAAGGATATCCGTGCCCTATATCCTACCAACTTTTTCCACCGAATTATCACAGCCCTGCCTAATGTATGTAGGTCCCCATATGAAGCTGCATTTTTTTAGCAGCATTTACCATTACTTACTATGGCCTGCTCAGAGTTACCGAAACACTTGCACTCATGCACTCGGACCTGACTATTGTACATGAGCTTATGCCAGATTATTATACAAAAGTCAAAACTGACCAGATAGGTAGCTCCA
Unaligned ( gi|17 ): AGTTCCTAAGTCCAACACTATCAGTCAACCTCTGTCAAAATCAATAATGAAAAACACTTTCTGTCCAGTGGACTTGTTTATGACTTACCCCAGACTAAGACTTCACATTTCGAGCACACTATGGCTACTGGTGCACATCATGGCAAACCTATTACGCAGTCCTAATTCCTAGCCATTCTGAAAAATATGCTTT

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                111                                                                      4444444444444                                            1          1                     1             2222222222        333333333333333333333           999999999999999999999999999999999999999999999999999     22222                         1111                                                                                   11               1111                                       7777777777777777777777777777777777777            111         11    222222222    11                              33333333333333     2222                           22222                                          2222    111              1        1                 44444444444444          222               111                                             3333333                                                                    55555555555555555555555555555555                    1   1                                         1   1                                              
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                444    0               1   1 1                       1       33          6666666666666 0  33       8   1         1      2    0    0     1    0            0 1  0   0         2   2222222222  33    333333333333333333333       1   444444444444444444444444444444444444444444444444444     00000     1                   0000           0 0  0     3  0  2               1    1  44   99 44     99999  4  66 4  11   1           4444     0     3  1         5 1  0       4 0000000000000000000000000000000000000  1   0   0 333   777   66    888888888  0 11         6 2  1  1  0         77777777777777     6666 888     7 11  1 2   4  2  55555  2      2    66  9999  1 1       1       2222    555       1      5  9     5    4     0      33333333333333    99    555  1            111       8  3     3      1           1         2222222           0     1 1                   3       1   2 0              88888888888888888888888888888888    3               0   6              0             0            3   3       3       6     6              1         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ...    .               .   . .                       .       ..          ............. .  ..       .   .         .      .    .    .     .    .            . .  .   .         .   ..........  ..    .....................       .   ...................................................     .....     .                   ....           . .  .     .  .  .               .    .  ..   .. ..     .....  .  .. .  ..   .           ....     .     .  .         . .  .       . .....................................  .   .   . ...   ...   ..    .........  . ..         . .  .  .  .         ..............     .... ...     . ..  . .   .  .  .....  .      .    ..  ....  . .       .       ....    ...       .      .  .     .    .     .      ..............    ..    ...  .            ...       .  .     .      .           .         .......           .     . .                   .       .   . .              ................................    .               .   .              .             .            .   .       .       .     .              .         
lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                000    8               0   0 0                       2       22          5555555555555 2  88       8   0         0      5    2    0     2    8            2 0  2   0         5   5555555555  88    000000000000000000000       0   555555555555555555555555555555555555555555555555555     00000     0                   6666           1 5  2     4  2  4               0    0  99   55 66     00000  0  33 7  88   0           3333     5     9  0         4 0  9       4 0000000000000000000000000000000000000  1   9   1 333   888   77    777777777  9 11         7 6  0  0  7         55555555555555     8888 888     3 11  1 9   4  6  77777  3      2    77  4444  0 7       1       4444    000       4      0  4     0    2     8      55555555555555    77    222  0            777       0  8     8      0           0         5555555           2     2 0                   2       0   5 8              22222222222222222222222222222222    8               0   0              8             7            3   3       7       7     7              0         
consensus                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGA-GCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CCGCACTTTTGTA--TTTTCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T-CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCAC-T---CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCAC----TC-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAACNACCTAATGCAANAGTTCATGG-------CCACAGAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATTC------------ATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
Reference ( family-2418 )     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                NNNNNNNNNNCAAAACCAATTACCCGCTTTCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGNTTANANGCACCAGGTCATTATAGGTCCCATAGCTTCCGTATAGGCATGGCTACCGA-GCT--AGCCAAGCAGGGGGTTCNAAGCAGTCANATTAAAGCAATGGGGA-GATGGAATTCNAATGCTTATCTTGCNTACATT-CGCCCTACCGTATAAATTTGTC-CTACATCA-CCGCACTTTTGTA--TTTTCTTTCACCNTGTATATACGTTNA------TTTTCAAC-T--ATTT-----CTTTAATT-G--CATGTC-----TAACCNAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTCGGATCATCCATTCCTTATTGGGCCGGGNTGGCNGCA-CAG-CAN-AGACC---G-GG-GGNNCGCAA-CCTNAACCTGCCAGCGANGATCACCTGGAACGGNATTCGGGGCCTNAAGTGGGACC-A-G-TAGAGCAAACTATGGAAAA---GAT-TA----T-CACAAACATGGTCAAAAA---TCC--CCCCGCCTGA-T-TTCTT-CTGTTTCATGTNGGNTCNAACGACCTTACGTCCTCCGAC-AGAATTAGTCACAT---CAAAATCCNTCGCCAAC-AANATGG---CCAATGCACACTGTNCAG----ATNCAATGCTCTGTGGCCAAATACAACCAAGCTTATTTGGTCAGGCATTACTTGCCTAGGCGCTATTGGCAC----TC-GCCCAGCCCTTGATGCGAT-GGNCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAACNACCTAATGCAANAGTTCATGG-------CCACAGAGGTCCCGGGTTTNTACATAGATCATGATCACAATATCAAANTCTCGTAAATTCAGTCATTC------------ATTC------GC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACGATCAGTCTTGGT-CCA-AGTATTCGTCAGTGACCCTTTCAATATCCCATCCCTNTGTTTGTTG
gi|1                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCACCAGGTCATTATAGGTCCCAACGCTTCC----AGGCAAGG-------------------GGAGGGG--TCGAAGCAGTCATATTAAAGCAATGGGGA-GATGGAATGCCCATGCTTATCTTGCATAAATT-CACCCTACCGTATAA-------------TCA-CT--ATTTTGGTAATTTTTCTTTCACCTTGTATATATGTTCA------ATTTCA--------TT-----CCTTA--T----CATGCC-----TAACCTAAACCAAGTATTCCAGGTG----CATCTGTCTGG-TAGTCGGATC--------CTTATTGGGCCGGGTTAGTAGC--CAG-CAT-AGACC---A-GG-GGCTCTCG--CCTCAACCTGCCAGCAA--ATCACTTGGAACGGTATTTGGGGCTTAAAGTGGGACC-A------AGGAACCCATA-------------A----T-CACGGACATGGTCAAACA---TTCATCCCCACGTGA-TATTCTT-CTGTTTCAT-TCGGATCAAATGGCCTTACGTCCTCCGAC-C---TCAGT----T---TAAAATTCATCGCCAAC-AACAT-----CCAATGCACACTGTTAAG----ATACCATGCTCAGTGGCCAAAT----CCAAGCTTGTTTGGTCCGGC-TTACTTGC-TAG-CGCTATTGGCAC----TAAGC--AGCCCTT--TGCGAT-GGACCCAAACGTAGCCAAAAAAAGCCGCGCGAGG-TTAAACCACCTAATGCAAAAGTTCATTG-------CCACAGAGGTCGCGGGTATCTATATAGATCATGATCACA---TCCAAACCTCACAAATTAAATTATTCCATCAAGATGGCACTC------GC--------CTAT-CTATTTAGACAATCA-GTTATTTCTCAATAATCT-CGGGAAGGGTTACAATCAGTCTTGGT-CCA-AGATTTCGTCAGTGA-CCTTTCAATATCCCATTCCTGTGTTTGTTG
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGGTGGCAGCA-ACG--AC-AAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGTTG-TCACCTGGAAAGGAGTGCGGGGACCAGA-TGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATACAGAAATATTTT----AA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTC--AC-AAAATGG---CCTATGCACTTTGTT-AG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAActtcttaacccatagctgtattgatttggggaaactttaacatacctaatttgttgtggaggtcactgtgccaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            catactggggggggTGGCAGCAACAG-GACCAAACC---A-GG-TGGACGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGGACTCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAACTTAGT-AA----TACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTTACTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTTCA-C-AAAATGG---CCTATGCACTTTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        g----CATCCATCTGGATTGTGGGATAATGCATTCCCTATTGGGCTTGTATCGCTGT--CAGACAG-AAACC---A-GG-GGCAC-TAA-CATGAACACCCGAGCGTCCATTTCCTGGAATGGAATTCGAGGAGTCAAATGGGAGC-AGG-TTGAACCAGCCTT---------GATGTA----G-CAAAAA---GACTGAA-----------CCCGCCAGA-T-ATGTTAGTTTTTCATGCGGGGTCTAATGACCTCA------CTGATGAGGGC--GTCACTTGTACATATTTTTTTTTTTACAAAGATGGCCCCCAATGTACATTGTGTAG----GTTTAATGCTCTTTGGCCCAATACGA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   caGTCATTTTAGATCCACTAGTTATCGCATTGGCATTGACACCAA-ATT--AACCAAACTTGGGTTTTTACACAATTACATTAAA-CAAAAGGGATGGTGGTAGTC-AATTCTTATCTTTCATACACTATAACCTAGC-TAT---TTTGTCACTACATCA-ACACACT----TA------CTTTCACTCAGT---TACATTAAAGAAGCTTTTCAACGT--ATTT-----GTTAAATTCGGCCATGCCACTAGTAACTCTAATTAAGCATTCCA--TGACCTTATCTATCTGGATTGTGGGCTAATCTATTACGTATTGGGCTGGAATAGCTG-G-CAG--AT-AGAaa
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTATTTTGAAAAAAAAAAAATGTCTCACCTGATTAAAGGTACC
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                      ggttactttgaattagtgaagttgtacacaggtatctgaccttcaattgatgcatccggtcacatcttactcaccattaccaaatccaaaacagaccaattagggcggtccaccatattcaaaatcaccaagcaaaacgatagtactatctgtcctgtacatctgatcaggaccttcgtcaaactcgtatctaacaacacaagtaccttacttacacatgtcaatggcCAAAAATAATTACCCGCTTCCAATTTCAGTCTATTTTG---AAAAAAAAATGTCTCACCCGCTTACACGCAC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aaatatcgattcgatacatccagttacatcttactcaccattaccaagtccaaaaacggaccaattaggccggtccaacactgtcaaaatcaccaagtaaaatcttagtacttctggtcaggaccttcctcaaactcgtatctaacaacacaagtaccttacttgcacatatcgatgaAACCTGCAAGC----ATCACGTGTGATGGCATTCGGGGCCTTAAGTGGGATCAA-G-TA---CGAA-----GAATA---GAC-CA----T-AACAAACATGGTTAGCAA---TGC--TCCA----GA-C-GTCT---TGTTTCATGTGGATGCGAATGATCTTACATC
gi|19                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTC-----TAATCAAACCCAAGTTTTCTAGGCA----CAACTATTTGGATAATTGGATCATCCATTCCTTACTGGGCGGGGCTGGTTGCA-CAG-CAG-AGACCAGGG-GG-AGGGGGCAATTCTTAACCTACCTACTAGGATCACTTGGAACGGCATCCGtcatatttcgtccaatgttttcactaacatggtacaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CNAAACCAATTACCCGCTTTCAATTTCATTCTATTTTG---AAAA-AAAATGTCTCACCTGATTAAAGGTACCAGGTCATTACAGGTCTCACAGCTTCCGTATAGGCATGGCTA---ATGCTTCAGCCCAGCAGGCGGTTCCAAGCAGTCAGATTGGAGCAATTGGGA-TATGGGATTCTAATGCTTATCTTGCCTATATT-CGCCCTACTGTATAAAGCATTC-CTTCATTACCCGCTTTTTTGCA--TTTT-TTTCACCATGTA-------------------------T--ATTT-----CTTT-ATT-----ATGTC-----TAACCTAAACCAAGCATTCCAGGTG----CATCTGTCTGGATAGTCGGATCTTCAATTCCTTATTGGGCCGAGTTAGCAGCA-CAG-CAT-AGACC---GTGG-GGGTCTC-A-CCTCAGCCTGCGAGCAAAGATTACTTGGAACGGTATTCGGGGCTTGAAGTGGGACC-A----AG---------TGGAAAA---CAT-TA----T-CACTAACATGGTTAAAAA---TCC--CCCCACCTGA-TATTATT-CTGTTTCATGTCCGATCTAATGACCTTACGTCCTCCAAC----CTTAGT----T---CAAAATCCCTTGCCATC-AGCATA-----CAATGCATATTGTACAG----ATACAATGCTTTGTGGCCAAA---AACCAAGCTTATTTAATCAGG-ATTACTTG-CTAGACGCTATTGGCAC----T--GTCCAGCCCTTG--GCGAT-GGGCCCAAAATTAAC---AAAAGAC-GT-TTGAGGTTAAACAACCTAATGCAAAAGTCCATGGCCACAGTCCACAGAGGTCTCATGTTTCTACATTTATCACGATCAAAATATCAAAATCTCAGAAATTCAATTATTC------------CGTCAAGACGGCTCTCACCTCTATCCGATTTAGGCAATCA-GTTCTTTCTCAATAATCTTCAGGCAGGGTTACGATCTGTCTTGGTGCCA-AGTATTCATCAGTGACACTTTCAATATCCCATCCCTTTGTTTGTTG
gi|20                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ttaaaggtacCAGGTG----CGACTATCTA-----TCGGAGCATTCATACCTTGCTGGTCCGGAATGGCTGCA-TAG-CAG-AGACC---G-GG-GG
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACCAATTACCCGCTTTCAATTTCAGTCTGTTTTG---CAAAAAtgg
gi|4                          : ttcaccacccttgtgtcccgccatatgtgggacattaagaagtgtcaaggctctcgcacaactcgttatcaaccaatacacctacgccaccgcattacagccgttcaacatttttcgcacccagtatggattacctcaatcttagcctgccccagtagatcagctgttacactttctagcctacttgcatattcgggatggctcttttgcaacagcccagctatatattaatccaatttcccattttcataaacttaagggtcattcagacacaacaaaaatttacacactctccaaacccctagaaggcatccgaagatctgcagatcctagcaaggaccttagaatcccaatctcgcagcagcttctcgctaaacttatccaagttttaccaatcaattgtcgatctccctatgaatcagccctgtttacagcttcatactgcttagcttattttgggttacttagattagcgaagttttacatctccaggtatttgaccttcatttgcaagcatccggtcacatctttcccactattactaagtccaaaatggaccagatagggcggtccaccattgtcaaaatcaacaaccaaaatcatggtactttctgtcctgtacatctggtcaggacctacctcaaactcagttctagcaacacaagtactttagccatacatattgatggtAGGTCATTATAGGTCTCATAGCTTCCGTATAGGCATGGCTACTGA-GCT--AGCCAGACAGGGGGTTCAAAGCAGTCAGATTAAAGCAATGGGGA-GATGGAATTCAAATGTTTATCTTACCTACATT-CGCCATACTGTTTAAATTTGTC-CTATATCAGTTGTACCTTTGTA--CT--CATTCATCATATATATACATGTA------TGTGCAAT-TTAATTTTTTTTCTTTAATT-G--TATGTC-----TAACCAAAACCAAGTATTCCAGGTG----CATCTATCTGGATAGTTGGAGCACCCATCCCTTATTGGGCCAGGGTGGCAGCA-CAG-CAT-AGACC---G-GG-GGCTCACA--CTTCAACCTGCCAGCAAGGAGGACTTGAAATGGTATTCCGCGCTTAATGTGGGACC-A------AG-------TGGAAAA---GAT-TA----T-CACTAACATGGTCAAAAA---TTCA-CCCCACCTGAGT-TTCTT-CTGTTTC-----GGATCTAATGACCTTACGTTCTCCGAC-T---TTAGT----T---CAAAATCCCTCGCCAAC-AACAT-----CCAATGCACACTATACAG----ATACAATGCTCTGTGGCCAAA---AACTAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCTATTGGCGC-----C-ACGTAGCCCTTtgcct
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AACAGTTCATGG-------CCACTGAAGTCCCGGGTCTGTACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTacggctaaacagttcatggccactgaagtcccgggtctgtacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatctt
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aggtcattataggtctcatagcttccgtataggcatggctactgagctagccagacagggggttcaaagcagtcagattaaagcaatggggagatggaattcaaatgtttatcttacctacattcgccatactgtttaaatttgtcctatatcagttgtacctttgtactcattcatcatatatatacatgtatgtgcaatttaattttttttctttaattgtatgtctaaccaaaaccaagtattccaggtgcatctatctggatagttggagcacccatcccttattgggccagggtggcagcacagcatagaccgggggctcacacttcaacctgccagcaaggaggacttgaaatggtattccgcgcttaatgtgggaccaagtggaaaagattatcactaacatggtcaaaaattcaccccacctgagtttcttctgtttcggatctaatgaccttacgttctccgactttagttcaaaatccctcgccaacaacatccaatgcacactatacagatacaatgctctgtggccaaaaactaaccttatttggtcaggattacttgctaggcgctattggcgccacgtagcccttacggcta------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAG
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGNTCCCTCGCCAAC-AACAT-----CCAATGCACACTGTACAG----ATACAATGCTCTGTGGCCAAA---AACCAACCTTATTTGGTCAGG-ATTACTTG-CTAGGCGCCATCGTCAC-----C-ACGTAGCCCTTntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 attcacctattcaatttagacaatcacgtttttctcagtaatcttcAACAGTTCATGG-------CCACAGAAGTCCCGGGTTTATACATAGATCATGATCACAATATCAAATTCTGGTAAATTCAGTCATTC------------ATTC------AC--------CTATTCAATTTAGACAATCACGTT-TTTCTCAGTAATCTTCAGGCAGGGTTACAATCATTCTTGGT-CCAGAGTATTCCTCAGTGACCCATT-AATACCCCacggctaaacagttcatggccacagaagtcccgggtttatacatagatcatgatcacaatatcaaattctggtaaattcagtcattcattcacctattcaatttagacaatcacgtttttctcagtaatcttcaggcagggttacaatcattcttggtccagagtattcctcagtgacccattaatacccctgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        attcacctattcaatttagacaatcacgtttttctcagtaatcttcagntccctcgccaacaacatccaatgcacactgtacagatacaatgctctgtggccaaaaaccaaccttatttggtcaggattacttgctaggcgccatcgtcaccacgtagcccttacggctaCCCGATG----TGTATATCTGGATAATCG-----TCTATATTTTATTTG-CCGGGTTAGCGGCA-CAG-CAT-AGACC---G-GGCGGCTCACA--CCTCAACCTGTCAGCAAGGATCACTTGGAATGATATTCGGGGCTTGAAGGGGGATC-A-A------------ATAGAAGA---GAC-CA----T-CACAAACATGGTCAACAAGCTTCCTTCCCCGCCTAAGT-TCCTT-CGGTTTCATGTTGGATTTAATAAACTTACGTCCTCTGA----GATTAAT----T---CAAAATCCTTCGCCAAC--------------ATGTACACTATACAGATCTATATAATGCACTGTGCCCAA----AACTAAGCTTATCTGTTCGGG-ATTACTTG-CTAGGCGCTATTGGCACGATGTT-TCTC---------TGGGATGGGCCCCAAAATCAGC---AAAAAtgcttgaatttttttttttgcattcttgcgatacatagaacatatcaattatgggcaagcatgaataaatactatttttggctattgttccaa
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGTTGGCAGCA-ACG--AC-AAACC---A-GG-TGA-CGCAA-TCTGAATCTGGCAGCGGTTGTCACCTGGAAAGGAGTGCGGGAC-TCAGATGAGACC-A-GCTAGAGCAAACTATGGAAAA---ACT-TAGTAATACAGAAATATTTT---AAA---TCC--CCTC-----A-T-TTTTA-CTGGTGCATTTAGGTTCAAACGACCTTACA-------AC-AGAATTAGTCACAT---CAAAA-CAATTTC--AC-AAAATGG---CCTATGCAC-TTGTTAAG----ATTTCATGCTCTCTGGCCAAGTACAACC---CTTATTTTGTCAGCCAT--CTTACCTATAAAATAATGGCAT----TTTGCCCA--TCTTGATGCG---GGTCCCAAAATTAAC---AAAAAGC-GTACTAGAATTAAA