lowQualScore : 1 1 111 1 1
lowQualScore : 3 8 2 1 777 222 3 3 1 88 3 3 3 0 3 3 555 5 88 3 3 6 4
lowQualScore : . . . . ... ... . . . .. . . . . . . ... . .. . . . .
lowQualScore : 0 9 2 2 888 555 1 1 7 55 1 1 1 2 1 3 888 2 22 3 3 2 0
consensus : AATTATGATGAATCTAT-GATGAAAGG---TTTAG---G-A-GGTG-TG-A-ACTTA-TAT-G-T---AAAAAAAACTG-TT-G-AAATA-AGGAA
Reference ( gi|6 ) : AATTATAATGAATCTAT-GATCAAACG---TTTAG---G-A-GATG-GG-A-ACTTA-TAT-G-T---AAAATAAACTG-CT-G-AAGTA-AGGAA
gi|7 : AATTATAATGAATCTAT-GATCAAACG---TTTAG---G-A-GATG-GG-A-ACTTA-TAT-G-T---AAAATAAACTG-CT-G-AAGTA-AGGAA
gi|3 : AATTATGATGAATCTATTGATGAAAGGGATTTTAGT--GTA-CATG-TG-C--CTTA-TGT-G-T---AAAATATACTGTCTCG-AAATA-AGGA
gi|4 : atcAATTATGATGAATCTTTTGATGAAAGG---TGTATAACG-A-GATG-GG-A-ACTTA-TAT-
gi|1 : gtgatcATGATAAATTAAT-GATGACAGG---TTTAG---G-A-GATG-GG-A-AGTTG-TATGG-T---AAA--AAACTG-TT-G-GGAAA-AGGAAtgtttaaaaagggaacatt
gi|13 : tgtcgatcaattacatgcTGATGAATCTAT-GATGAAATA---TTTAA---G-A-TATA-GG-A-CCTTA-TAT-G-T---AAA--CGACTG-TT-G-Acat
gi|9 : TAT-GATGAAAGG---TT-AG---G-A-AGTGTGG-A-ACTTC-TAT-GTT---AAAAAAGACTG-TT-G-AA-TA-AGGAA
gi|12 : AT-GATGAAAGG---GTTAG---G-A-G-TG-TG-A-ACTTG-TAT-G-T---TATAAAAAC-G-TT-G-AAAT--AGGAAtata
gi|11 : AT-GATGAAAGG---TTAGG---A-A-GGTG-TG-A-ACTTA-TGT-GCT---AAAA-AACCTG--T-G-AAATACAGGAAtat
gi|10 : T-GATGAAAGG---GTTAG---G-AAGGTG-TG-A-ACTTA-T-T-GTT---AAAAAAAACTG-TT-GAAAGTA-AGGAAta
gi|8 : TTAG---A-A-GGTG-TG-ACACTTACTGT-G-TTTTAAAAAAAACTG-CT-G-AAATA-AGGAAtt
gi|14 : gagggTAGT--G-A-GGTG-TG-A-ACTTA-TTT-G-T-----TACAAACTG-TT-G-AAATA-AGGAtacaaattaat
gi|16 : gaaagggTAG---T-A-GGTG-TG-A-ACTTA-TAT-GTT---AAAAAAACCTG-TT-G-AAtatt
gi|5 : aaggg-A-GATG-TGTG-ACTTA-CAT-G-T---TAAA-AAACTG-TT-G-AAATA-AGGAAaacagga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): GAAAGGGTTAGGCAGGTGTGAAAATATTATGTTAAAAAAATTTGGAATAAGGAATATTTTAATAAGTTATAGTTGACCTTGACC
Unaligned ( gi|15 ): AAGGGTTGAGGTGTGAACTTATTTATTGTTAAAAAAACCTGTTGAAATAGGAAT
Alignments
lowQualScore : 111111111 1111111
lowQualScore : 5 4 000000000 5 2 2 2 2 2 5555 5 7777777 33 3 33
lowQualScore : . . ......... . . . . . . .... . ....... .. . ..
lowQualScore : 7 0 000000000 3 7 7 7 7 7 3333 3 0000000 99 1 55
consensus : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-G--T---AAAAAAAACTG--TTGAAA-TA-AGGAA
Reference ( family-24 ) : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-G--T---AAAAAAAACTG--TTGAAA-TA-AGGAA
gi|1 : ATGATAAATT-AA-TGATGACAGG---TTT---AG-G-A-GATGG-GA-AGTTG-T--A-TGG--T-----AAAAAACTG--TTGGGA-AA-AGGAA
gi|10 : tgtcgatcaattacatgc-TGATGAAAGG---GTT---AG-G-AAGGTGT-GA-ACTTA-T----T-GT-T---AAAAAAAACTG--TTGAAAGTA-AGGAAcat
gi|11 : A-TGATGAAAGG---TTA---GG-A-A-GGTGT-GA-ACTTA-T--G-T-G--C---TAAAAAACCTG---TGAAA-TACAGGAAtt
gi|12 : A-TGATGAAAGG---GTT---AG-G-A-G-TGT-GA-ACTTG-T--A-T-G--T---TATAAAAAC-G--TTGAAA-T--AGGAAta
gi|13 : TGATGAATC-TA-TGATGAAATA---TTT---AA-G-A-TATAG-GA-CCTTA-T--A-T-G--T-----AAACGACTG--TTGAtat
gi|14 : GAAAGG---GT----AGTG-A-GGTGT-GA-ACTTA-T--T-T-G--T-----TACAAACTG--TTGAAA-TA-AGGA
gi|15 : AAGGG---TT-------G-A-GGTGT-GA-ACTTA-TTTA-TTG--TT--AAAAAAACCTG--TTGAAA-T--AGGAAtatt
gi|16 : AAGGG---T-----AG-T-A-GGTGT-GA-ACTTA-T--A-T-GT-T---AAAAAAACCTG--TTGAAA-AC-AGGAt
gi|3 : AATTATGATGAATC-TATTGATGAAAGGGATTTT---AGTGTA-CATGT-G--CCTTA-T--G-T-G--T---AAAATATACTGTCTCGAAA-TA-AGGA
gi|4 : atcAATTATGATGAATCTTT-TGATGAAAGG---TGTATAAC-G-A-GATGG-GA-ACTTA-T--ATT-GTTT---AAAAA
gi|5 : gtgatcAAAGG---TT-----A-G-A-TGTGT-GA--CTTA-C--A-T-G--T---TAAAA-AACTG--TTGAAA-TA-AGGAAgggaacatt
gi|6 : gaAATTATAATGAATC-TA-TGATCAAACG---TTT---AG-G-A-GATGG-GA-ACTTA-T--A-T-G--T---AAAATAAACTG--CTGAAG-TA-AGGAAtattttaagtttggaggacctttacc
gi|7 : AATTATAATGAATC-TA-TGATCAAACG---TTT---AG-G-A-GATGG-GA-ACTTA-T--A-T-G--T---AAAATAAACTG--CTGAAG-TA-AGGAA
gi|8 : AGG---GTT---AG-A-A-GGTGT-GACACTTACT--G-T-G--TTTTAAAAAAAACTG--CTGAAA-TA-AGGAA
gi|9 : g-TA-TGATGAAAGG----TT---AG-G-A-AGTGTGGA-ACTTC-T--A-T-GT-T---AAAAAAGACTG--TTG-AA-TA-AGGAAtacaaattaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GAAAGGGTTAGGCAGGTGTGAAAATATTATGTTAAAAAAATTTGGAATAAGGAATATTTTAATAAGTTATAGTTGACCTTGACC
Alignments
lowQualScore : 111111111 1111111
lowQualScore : 5 4 000000000 5 2 2 2 2 2 5555 5 7777777 33 3 33
lowQualScore : . . ......... . . . . . . .... . ....... .. . ..
lowQualScore : 7 0 000000000 3 7 7 7 7 7 3333 3 0000000 99 1 55
consensus : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-G--T---AAAAAAAACTG--TTGAAA-TA-AGGAA
Reference ( family-24 ) : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-G--T---AAAAAAAACTG--TTGAAA-TA-AGGAA
gi|1 : ATGATAAATT-AA-TGATGACAGG---TTT---AG-G-A-GATGG-GA-AGTTG-T--A-TGG--T-----AAAAAACTG--TTGGGA-AA-AGGAA
gi|10 : tgtcgatcaattacatgc-TGATGAAAGG---GTT---AG-G-AAGGTGT-GA-ACTTA-T----T-GT-T---AAAAAAAACTG--TTGAAAGTA-AGGAAcat
gi|11 : A-TGATGAAAGG---TTA---GG-A-A-GGTGT-GA-ACTTA-T--G-T-G--C---TAAAAAACCTG---TGAAA-TACAGGAAtt
gi|12 : A-TGATGAAAGG---GTT---AG-G-A-G-TGT-GA-ACTTG-T--A-T-G--T---TATAAAAAC-G--TTGAAA-T--AGGAAta
gi|13 : TGATGAATC-TA-TGATGAAATA---TTT---AA-G-A-TATAG-GA-CCTTA-T--A-T-G--T-----AAACGACTG--TTGAtat
gi|14 : GAAAGG---GT----AGTG-A-GGTGT-GA-ACTTA-T--T-T-G--T-----TACAAACTG--TTGAAA-TA-AGGA
gi|15 : AAGGG---TT-------G-A-GGTGT-GA-ACTTA-TTTA-TTG--TT--AAAAAAACCTG--TTGAAA-T--AGGAAtatt
gi|16 : AAGGG---T-----AG-T-A-GGTGT-GA-ACTTA-T--A-T-GT-T---AAAAAAACCTG--TTGAAA-AC-AGGAt
gi|3 : AATTATGATGAATC-TATTGATGAAAGGGATTTT---AGTGTA-CATGT-G--CCTTA-T--G-T-G--T---AAAATATACTGTCTCGAAA-TA-AGGA
gi|4 : atcAATTATGATGAATCTTT-TGATGAAAGG---TGTATAAC-G-A-GATGG-GA-ACTTA-T--ATT-GTTT---AAAAA
gi|5 : gtgatcAAAGG---TT-----A-G-A-TGTGT-GA--CTTA-C--A-T-G--T---TAAAA-AACTG--TTGAAA-TA-AGGAAgggaacatt
gi|6 : gaAATTATAATGAATC-TA-TGATCAAACG---TTT---AG-G-A-GATGG-GA-ACTTA-T--A-T-G--T---AAAATAAACTG--CTGAAG-TA-AGGAAtattttaagtttggaggacctttacc
gi|7 : AATTATAATGAATC-TA-TGATCAAACG---TTT---AG-G-A-GATGG-GA-ACTTA-T--A-T-G--T---AAAATAAACTG--CTGAAG-TA-AGGAA
gi|8 : AGG---GTT---AG-A-A-GGTGT-GACACTTACT--G-T-G--TTTTAAAAAAAACTG--CTGAAA-TA-AGGAA
gi|9 : g-TA-TGATGAAAGG----TT---AG-G-A-AGTGTGGA-ACTTC-T--A-T-GT-T---AAAAAAGACTG--TTG-AA-TA-AGGAAtacaaattaat
blockSeqs : T T GATTTT T T A G C C TTA T TTTTA TC G AC
blockSeqs : . . TGTATA T . . . . . AT . TTTA . . A
blockSeqs : . . GTT . . . . . . G . TTA . . A
blockSeqs : . . TTA . . . . . . A . TTA . . C
blockSeqs : . . GTT . . . . . . A . TTA . . A
blockSeqs : . . TTT . . . . . . T . TTA . . A
blockSeqs : . TTT . . . . . . A . CT . . A
blockSeqs : . TTT . . . . . . G . TT . . A
blockSeqs : . GTT . . . . . . A . TA . . A
blockSeqs : GT . . . . . . A . TT . . A
blockSeqs : TT . . . . . . A . TA . . .
blockSeqs : TT . . . . . . G . TA . . .
blockSeqs : TT . . . . . . A . T .
blockSeqs : T . . . . . . . . T
blockSeqCons : TTA****
originalCons : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-G--T---AAAAAAAACTG--TTGAAA-TA-AGGAA
finalCons : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-GTTA----AAAAAAACTG--TTGAAA-TA-AGGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): GAAAGGGTTAGGCAGGTGTGAAAATATTATGTTAAAAAAATTTGGAATAAGGAATATTTTAATAAGTTATAGTTGACCTTGACC
Alignments
lowQualScore : 5 4 999999999 5 5 2 2 2 2 6666 2 2 666 0 2 33 2 2
lowQualScore : . . ......... . . . . . . .... . . ... . . .. . .
lowQualScore : 7 0 222222222 0 0 5 5 5 5 9999 5 6 888 4 3 77 9 9
consensus : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-GTT--AAAAAAAACTG--TTGAAA-TA-AGGAA
Reference ( family-24 ) : AATTATGATGAATC-TA-TGATGAAAGG---TTT---AG-G-A-GGTGT-GA-ACTTA-T--A-T-GTT--AAAAAAAACTG--TTGAAA-TA-AGGAA
gi|1 : ATGATAAATT-AA-TGATGACAGG---TTT---AG-G-A-GATGG-GA-AGTTG-T--A-T-GGT----AAAAAACTG--TTGGGA-AA-AGGAA
gi|10 : tgtcgatcaattacatgc-TGATGAAAGG---GTT---AG-G-AAGGTGT-GA-ACTTA-T----T-GTT--AAAAAAAACTG--TTGAAAGTA-AGGAAcat
gi|11 : A-TGATGAAAGG---TTA---GG-A-A-GGTGT-GA-ACTTA-T--G-T-GCT---AAAAAACCTG---TGAAA-TACAGGAAtt
gi|12 : A-TGATGAAAGG---GTT---AG-G-A-G-TGT-GA-ACTTG-T--A-T-GTT--ATAAAAA--CG--TTGAAA-T--AGGAAta
gi|13 : TGATGAATC-TA-TGATGAAATA---TTT---AA-G-A-TATAG-GA-CCTTA-T--A-T-GT-----AAACGACTG--TTGAtat
gi|14 : GAAAGG---GT----AGTG-A-GGTGT-GA-ACTTA-T--T-T-GTT-----ACAAACTG--TTGAAA-TA-AGGA
gi|15 : AAGGG---TT-------G-A-GGTGT-GA-ACTTA-TTTA-TTGTT--AAAAAAACCTG--TTGAAA-T--AGGAAtatt
gi|16 : AAGGG---T-----AG-T-A-GGTGT-GA-ACTTA-T--A-T-GTT--AAAAAAACCTG--TTGAAA-AC-AGGAt
gi|2 : GAAAGG---GTT---AG-GCA-GGTGT-GA-AAATA-TT-A-T-GTT--AAAAAAA--T---TTGGAA-TA-AGGAA
gi|3 : AATTATGATGAATC-TATTGATGAAAGGGATTTT---AGTGTA-CATGT-G--CCTTA-T--G-T-G-T--AAAATATACTGTCTCGAAA-TA-AGGAtattttaataagttatagttgaccttgacc
gi|4 : atcAATTATGATGAATCTTT-TGATGAAAGG---TGTATAAC-G-A-GATGG-GA-ACTTA-T--ATT-GTT--TAAAAA
gi|5 : gtgatcAAAGG---TT-----A-G-A-TGTGT-GA--CTTA-C--A-T-GTT--AAAA--AACTG--TTGAAA-TA-AGGAAgggaacatt
gi|6 : gaAATTATAATGAATC-TA-TGATCAAACG---TTT---AG-G-A-GATGG-GA-ACTTA-T--A-T-G-T--AAAATAAACTG--CTGAAG-TA-AGGAAtattttaagtttggaggacctttacc
gi|7 : AATTATAATGAATC-TA-TGATCAAACG---TTT---AG-G-A-GATGG-GA-ACTTA-T--A-T-G-T--AAAATAAACTG--CTGAAG-TA-AGGAA
gi|8 : AGG---GTT---AG-A-A-GGTGT-GACACTTACT--G-T-GTTTTAAAAAAAACTG--CTGAAA-TA-AGGAA
gi|9 : g-TA-TGATGAAAGG----TT---AG-G-A-AGTGTGGA-ACTTC-T--A-T-GTT--AAAAAAGACTG--TTG-AA-TA-AGGAAtacaaattaat