lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 2222222222222222222222222222222 77777777777777777777777777777777777777 1 666666666666666666666666666666666666666666666666666666666666 4444 111111111 111111 2222222222222 111111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 333 1 1
lowQualScore : 44 4 222 3 2222222222222222222222222222222 55 2 1 00000000000000000000000000000000000000 5 1 2 88888 555555555555555555555555555555555555555555555555555555555555 5 4444 1 444444444 4 111111 4 9999999999999 4 7777 111111 33 7777 6 66 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 6 1 6 6 88 0 666 2 5 6 3
lowQualScore : .. . ... . ............................... .. . . ...................................... . . . ..... ............................................................ . .... . ......... . ...... . ............. . .... ...... .. .... . .. .................................................................................. . . . . . .. . ... . . . .
lowQualScore : 22 6 888 6 5555555555555555555555555555555 00 3 4 88888888888888888888888888888888888888 3 4 6 77777 222222222222222222222222222222222222222222222222222222222222 0 6666 4 666666666 0 555555 0 3333333333333 4 1111 777777 11 2222 5 88 6666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 7 5 7 7 55 3 555 8 0 0 3
consensus : NGCTGCAAC-GGGTACCCGAAATAAC-CGAAAA-C-----C-----GC-GGGTC-GT----GTC--G--TTCGGGT------C---CGT------T-----A------TTC---CGGATTTCGGTTCNGGTCCGGTGTTTGT---------AT--TA-------TT------AG----------AAA----------CAACATGGCG-TCAAAA-TCTAAATTT--CGC----TTGATT-TATTG------TT-A-----AT------TGA-TGTCATC-GTGGACGAAA-T-A--GACACANT-TAAAATACG-CC--------------------ACAGTA--TCAA----AATATCA-TCAA----TGA-CAAG-------A-----CATTTA---TATCG-AAGCATGG-AATGG-AA-ATGAGTAGAAGT-GGCAACGATGTTTCTAGTAT-GAT
Reference ( gi|4 ) : AGCTGCAAT-GGGTACCCAAAATAAC-CAAAAA-C-----T-----GC-ATGTT-GT----GTC--G--TTTGGGT------C---TGT------T-----A------TTC---TGGATTTCGGTTCTGGTCCAATGTTTGT---------AT--TA-------TT------AG----------AAA----------CAGAATGGCA-TCATGT-TCTAAATTT--AGC----TTGATT-TATTG------TT-A-----TT------TGA-TGTCATT-GTGGACAAAA-T-A--GACACAAT-CAGAATAAG-TC--------------------GCAGTG--TCAA----AATATCA-TCAG----TGA-CGAG-------C-----CACTTA---TATTGAAAGCATGG-AATGG-AA-ATGGGTAGAA-T-GGCAATAATGTTGCTAGCAT-GATA
gi|2 : GCTGCAAC-CGGTACACACAATAAC-CGAAAA-A-----C-----GC-AGGTC-AT----GTT--G--TTTGGGTTGGGTTC---GGT------TCCATCA------TTC---CGGATTTCGGTTCAGGTTTAGTGTTTGT---------AT--CA-------TTTCAATTAG----------AAA----------CATGATGGTG-TCAGAA-TTTAAATTT--CAC----TTGATT-TATTG------TT-A-----GT------CGA-TGTCAAT-GTACACAAAA-T-C--AAC-C-AT-TAGAATAAG-AC--------------------ACAG-----------------CA-CCA-------------------------------A---TATTGAAAGCATGG-AGGGG-AA-AGAAGCAAAAGT-GGCAACTTTGTTTCTAGTATAGAT
gi|1 : gGCTGCAGT-GGGCACCCGAAATG----------T-----T-----GT-TCATT-GT-----TC--G--GGTGGGT------T---CGTATTCCTT-----AATT---TTC---TGTATTTCAGGTCAGATCTGGGGTTTTTTTCTTCTTCAT--TT-------TT------AGGAATCTGTGTAAA----------CAACATGGTA-TCGAAA-TCTAACTTT--CGT----TTGGTT-TATTG------TT-A-----AT------TTA-TGTCTTC-ATGTACG---------GACA-AAT-----ATACG-CC--------------------ATAGTA--TCAG------TTTCA-CCAT----TGA-CAAA-------G-----CATTTG---TATCAAAAGCATGG-CATTG-AA-TTGAGTAGAAGT-GGCAATGATGTTTCTgtaaagtttaaaccagagtccatatcagataatctgctaaattaatatattgtaaaaaatacaa
gi|7 : ttaggGCTGCTAC-AGGTCCTCGAAATAAC-TGAAAA-C-----C-----GC-GGGTC-AA----GTT--G--TTTGGGT------C--------------------------------AGATCT-GATTCAGGTCCGGTGCTTGT---------ATAATA-------TT------AG----------AAA----------CAACATGGTG-TCAAAA-TCTAAATTT--TGC----TTGATT-TACTGTGGGACTT-A-----TT------TGA------------AACGAAG-T-A--AGCACAAcgtctaaaccagttcatgtccacaagtaattagattgtataaactaaatacaaa
gi|16 : gtgataattgaataggGCTGCAACCGGGTACCCGAAATTGC-CAAAAA-C-----T-----AT-AGATC-TT----GTT--G--TTCGGGT------T---TG-------------A------TT----TGG
gi|18 : gggGCTGTAAC-AGGTGCTCGAAATAAC-TGAAAACC-----T-----GC-AGGCC-AT---------G--TTTGATT------C---TAT------T-----ttcca
gi|6 : gCTTCAAC-AGGTACCCGAAATAACAGAAAAA-C-----C-----CC-AGGTC-AT----GTT--G--CT----T------T---TGT-------------------------TGAAAT-------TGGTTCAA-GTCTG----------AT--TA-------AT------AT----------AAA----------CAATGTGGCA-TCAAAA-TATAAAGGT--GGCTTAATTAATT-TATTG------TT-A-----AA------TGA-TGTCATT-GTGGACAAAA-C-A--GATACATT-TGAAATATG-TC--------------------ca
gi|19 : CTGAAAT-GGGTACCAGAAATAAC-TGAAAA-C-----T-----AT-GGGTC-GT----GTT--G--TTTGGTT------C---aaaggatccatacc
gi|15 : CTGCAAT-GCCTACCCGAAATAAC-CGAAAA-C-----C-----AC-GGGTC-GT----GCT--G--TCCGGGT------C---c
gi|5 : ggaTGTAAC-AGGTGCTCGAAATAAC-TGAAAA-C-----CCGCAGGCCATGTTTGA----GTC--GGATTCTATT------C---AAT------T-----A------TTC---TGGATTTTGGT-ATGGT-----GTTTGA---------AT--CA-------TT------AG----------ATA----------CAATATGACA-TCAAAAATCTAAATTT--CAC----ACGATT-TATTG------TT-T-----AT------AGA-TGTCACT-GCAGACAAAA-T-A--GACACATT-TGAAATAAG-CC--------------------ACAACA--TC------AATATCA-TCAA----TGA-CAGG-------A-----CA--TA---TAgggttcagttccagtattcggga
gi|3 : CAAT-GGGTACCTGAACTGTC-TTAAAA-C-----T-----GC-AGGTC-TT----ACT--A--TTCAATT------CAATTTT------T-----ACCGGATTTCAGTTGGATTTCAATTC-AGTCCAGTTTTAGTGATAGAATCAT--TA-------TT------AG----------AAATCTTTTTAAACAACATGGCA-TCA-------AAATTTTGAGC----GTGGTTATATT-------TT-AATGCTTTGTCCAATGA-TGGCATC-ATGGACAAAG-C-AATGACAAGATGTAAAATATG-TCAGACACCTTTAAGACACACTACAGTA--T--A----AATATCA-TCAT----TGA-GGAA--------------AC------------AAACATGG-ATTGGAAA-ATGAGCAGAA----GTAACAATc
gi|12 : AAC-AGGTACCCGAAATAAC-GGGAAA-CACAAGT------C-ATGTT-GTAACGATCATG--CTCGGGT------C---CAT------T-----T------TTC---CGGATTTTGG
gi|14 : agatgaaggacaaGGTTCGGGTTCAATGTTTGT---------GC--TATTTAGTGTT------AG----------AAA----------CAAGATGGCACTGATA--TCTATATTC--A-C----TTGATT-TATTG------TT-A-----
gi|10 : TTTTT---------AT--TA-------TT------AG----------AAATCTGTTTAATCAACATGACT-TCAGAT-TGTAAATTT--TGC----TTGGTT-TATTG------TC-A-----AT------TGA-TGTCATC-AAGGACAAA
gi|9 : AAACTT--GGC----TTAATT-TATTG------TT-A-----AA------TGA-TGTCATC-AAGAAAAAAA-CCA--TTCGCATT-GAAAATACGCTC--------------------GAAG-A--TCCA----AAT--CA-TCAA----TAA-CAAAATATGTACATGTACATGTA---TATCGTAAGCATGG-AACGG-AA-ACGAGTAGAAGT-GGCATTGATGtttaaaattcgccacag
gi|8 : aaaatttaT-TATTG------TTTA-----CT------TGAATGTCGTCCATGGACAAAAAT-A--GGCACACT-TAAAATACT-CC--------------------ACAG-GATTCAG------TATCAATCAAA---TGA-CAAA-------A-----CATTTA---TATTG-AAGC-TGGAAATGA-AA-ATGAGAAGAA-GAGGCAACACTATTTCTAGTAT-attct
gi|13 : TCATT-ATGGATGAAA-T-G--GACACCAT-TAGAATAAG-CC--------------------AACGCA--CCAATATGAATATCA-TCGA----TGA-AAAG-------A-----CA-TTAAAGTATTGatccgtcaagtctaaacgttacattgtaca
gi|11 : TG--TTAA----AGCATCA---AGATGATGATCAAG-------A-----CACTTG---TATTGGAAACATGG-AAGGG-AACAT--GTAGAAGT-AGCAATGATGTTTCTATTAT-
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AAGCATATGGTGTCAAAATCTAAAGCATGGTTGTATTTTGATGATGGTATCATGGCCAAAACAATGA
Unaligned ( gi|20 ): TATTTCTAGTATAGATGTCAAGTCTAAACCAGAGTCCA
Alignments
lowQualScore : 1111 11111111111 44444444444444444444444444444444 1 1111111111 4444444444444444444444444444444444444444444444444 222222222222 333333333333333333333333333 222222 3333333333333333333333333 1
lowQualScore : 3 2 3 8888 0 2 1111 77777777777 0 99999999999999999999999999999999 2 1 9999999999 1 0 5555555555555555555555555555555555555555555555555 2 2 3 88888 7777 6 3 000000000000 4 33 6 444444444444444444444444444 88 1 4 6 4 222222 1 4 55 55 3333333333333333333333333 5 5 5 0 0 0
lowQualScore : . . . .... . . .... ........... . ................................ . . .......... . . ................................................. . . . ..... .... . . ............ . .. . ........................... .. . . . . ...... . . .. .. ......................... . . . . . .
lowQualScore : 3 2 3 7777 7 2 7777 33333333333 4 55555555555555555555555555555555 3 6 4444444444 0 2 3333333333333333333333333333333333333333333333333 3 1 6 77777 7777 7 6 111111111111 0 88 2 888888888888888888888888888 33 6 0 7 0 888888 0 4 66 66 8888888888888888888888888 7 7 7 1 7 0
consensus : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTT---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAA--------------------A-T---AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGG-AA-ATGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
Reference ( family-2386 ) : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTC---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACGAA--------------------A-T---AGACACANTTAAAATACGC-CACAGTAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGG-AA-ATGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
gi|1 : GCTGCAGT-GGGCACCCGAAATG-TTG-TTCATT-GTTCGGGTGG-------GT-----------TCGTAT-----------T-C------CTT--AATTTT-CTGTATTTCAGGT----------CAGATCTGGGGTTTTTTTCTTCTTCAT--TTTT-------AGGAATCTGTGTAAA----------CAACATGGTATCGAAA-TCTAAC-TTTCGT----TTGGTT-TATTGTT-AAT-----------TTA-TGTCTTC-ATGTACG-----------------------------GACA-----AATATACGC-CATAGTAT-C------AGTTTCA-CCAT-TGA-CAAAG------------CATTTGTATCAA-AAGCATGG-CATTG-AA-TTGAGTAGAAGTGGCAATGATGTTTCTCGT
gi|10 : ttaggTTTTT---------AT--TATT-------AG----------AAATCTGTTTAATCAACATGACTTCAGAT-TGTAAA-TTTTGC----TTGGTT-TATTGTC-AAT-----------TGA-TGTCATC-AAGGAC-AA--------------------A-T-----------TTAAAATTCGC-CACAGctaaaccagttcatgtccacaagtaattagattgtataaactaaatacaaa
gi|11 : AGCAT-CAA----GATG-------A-TGATCAAGA------------CACTTGTATT-GGAAACATGG-AAGGG-AACATG--TAGAAGTAGCAATGATGTTTCTATTAT-
gi|12 : tgttaaAAC-AGGTACCCGAAATAACGG-GAAA-C-A--CAAGTCATGTT---GTAACGATCATGCTCGGGT-----------C-C------ATT--T---TT-CCGGATTTTGGgatgtcaagt
gi|13 : agatgaaggacaaTCATT-ATGGATGAA--------------------A-T---GGACACCATTAGAATAAGC-CAACGCAC-CAATATGAATATCA-TCGA-TGA-AAAGA------------CATT
gi|14 : GGTT----------CGGGTTCAATGTTTGT---------GC--TATTTAGTGTTAG----------AAA----------CAAGATGGCACTGATA-TCTATA-TT-CAC----TTGATT-TATTGTT-Aaaagtattg
gi|15 : CTGCAAT-GCCTACCCGAAATAACCG-AAAACC-A--CGGGTCGTGCT---GT-----------CCGGGT-----------CGG------GTTCAG---TT-CCAGTATTCGG
gi|16 : ggaGCTGCAACCGGGTACCCGAAATTGCCA-AAAACT-A--TAGATCTTGTT---GT-----------TCGGGT---------------------TT------------GATTT-GGTT----------Cga
gi|17 : gggATATGGTGTCAAAA-TCTAAA-----GC----ATGGTTGTATT-TT-GA------------TGA-TGGTATC-ATGGCCAAA--------------------A-C---Aca
gi|18 : aagcGCTGTAAC-AGGTGCTCGAAATAACTG-AAAACCTG--CAGGCCATGTatga
gi|19 : gCTGAAAT-GGGTACCAGAAATAACTG-AAAACT-A--TGGGTCGTGTT---GT-----------TTGGTT-----------C-C------ttgattctattca
gi|2 : GCTGCAAC-CGGTACACACAATAACCG-AAAAAC-G--CAGGTCATGTT---GT-----------TTGGGTTGGGTTCGGTTC-C------ATC--A---TT-CCGGATTTCGGTT----------CAGGTTTAGTGTTTGT---------AT--CATTTCAATT-AG----------AAA----------CATGATGGTGTCAGAA-TTTAAA-TTTCAC----TTGATT-TATTGTT-AGT-----------CGA-TGTCAAT-GTACACAAA--------------------A-T---CAAC-CA-TTAGAATAAGA-CACAGCAC-C------AATAT--------TGA-------------------------------AAGCATGG-AGGGG-AA-AGAAGCAAAAGTGGCAACTTTGTTTCTAGTATAGAT
gi|3 : gCAAT-GGGTACCTGAACTGTCTT-AAAACT-G--CAGGTCTTACT---AT-----------TCAATT-----------C-A------ATT--T---TTACCGGATTTCAGTTGGATTTCAATTCAGTCCAGTTTTAGTGATAGAATCAT--TATT-------AG----------AAATCTTTTTAAACAACATGGCATCAAAA-TTTTGA-----GC----GTGGTTATATT-TT-AATGCTTTGTCCAATGA-TGGCATC-ATGGACAAAGCAATGACAAGATGTAAAATA-TGTCAGACACCTTTAAGACACAC-TACAGTAT---A----AATATCA-TCAT-TGA-GGAAA------------C------------AAACATGG-ATTGGAAA-ATGAGCAGAAGTAACAAgtaaagtttaaaccagagtccatatcagataatctgctaaattaatatattgtaaaaaatacaa
gi|4 : GCTGCAAT-GGGTACCCAAAATAACCA-AAAACT-G--CATGTTGTGTC---GT-----------TTGGGT-----------C-T------GTT--A---TT-CTGGATTTCGGTT----------CTGGTCCAATGTTTGT---------AT--TATT-------AG----------AAA----------CAGAATGGCATCATGT-TCTAAA-TTTAGC----TTGATT-TATTGTT-ATT-----------TGA-TGTCATT-GTGGACAAA--------------------A-T---AGACACAATCAGAATAAGT-CGCAGTGT-CAA----AATATCA-TCAG-TGA-CGAGC------------CACTTATATT-GAAAGCATGG-AATGG-AA-ATGGGTAGAA-TGGCAATAATGTTGCTAGCAT-GATt
gi|5 : aTGTAAC-AGGTGCTCGAAATAACTG-AAAACCCG--CAGGCCATGTTTGAGT------------CGGAT-----------T-CTATTCAATT--A---TT-CTGGATTT----------------TGGTATGGTGTTTGA---------AT--CATT-------AG----------ATA----------CAATATGACATCAAAAATCTAAA-TTTCAC----ACGATT-TATTGTT-TAT-----------AGA-TGTCACT-GCAGACAAA--------------------A-T---AGACACATTTGAAATAAGC-CACAACAT-C------AATATCA-TCAA-TGA-CAGGA------------CATATAa
gi|6 : CTTCAAC-AGGTACCCGAAATAACAGAAAAACC-C--CAGGTCATGTT---GC-----------T----T-----------T-T------GTT-----------GAAATT-GGTT----------CAAGTCTG-----------------AT--TAAT-------AT----------AAA----------CAATGTGGCATCAAAA-TATAAA-GGTGGCTTAATTAATT-TATTGTT-AAA-----------TGA-TGTCATT-GTGGACAAA--------------------A-C---AGATACATTTGAAATATGT-CAAAGGAT-Cc
gi|7 : GCTGCTAC-AGGTCCTCGAAATAACTG-AAAACC-G--CGGGTCAAGTT---GT-----------TTGGGT-----------C----------------------AGATCT-GATT----------CAGGTCCGGTGCTTGT---------ATAATATT-------AG----------AAA----------CAACATGGTGTCAAAA-TCTAAA-TTTTGC----TTGATT-TACTGTcatacc
gi|8 : gtgataattgaataggT-TATTGTTTACT-----------TGAATGTCGTCCATGGACAAA--------------------AAT---AGGCACACTTAAAATACTC-CACAGGATTCAG------TATCAATCAAATGA-CAAAA------------CATTTATATT-G-AAGC-TGGAAATGA-AA-ATGAGAAGAAGAGGCAACACTATTTCTAGTAT-gggacttatttgaaacgaagtaagcacaa
gi|9 : AAAA-TTTAAAACTTGGC----TTAATT-TATTGTT-AAA-----------TGA-TGTCATC-AAGAAAAAA--------------------A-CC--ATTCGCATTGAAAATACGCTCGAAG-AT-CCA----AAT--CA-TCAA-TAA-CAAAATATGTACATGTACATGTATATC-GTAAGCATGG-AACGG-AA-ACGAGTAGAAGTGGCATTGATGATTCTatccgtcaagtctaaacgttacattgtaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATTTCTAGTATAGATGTCAAGTCTAAACCAGAGTCCA
Alignments
lowQualScore : 11111111111 44444444444444444444444444444444 1 1111111111 4444444444444444444444444444444444444444444444444 222222222222 33333333333333333333333333 222222 3333333333333333333333333 1
lowQualScore : 3 2 3 99999 0 2 555 77777777777 0 99999999999999999999999999999999 2 1 9999999999 1 0 5555555555555555555555555555555555555555555555555 2 2 3 88888 7777 6 3 000000000000 4 33 88888888888888888888888888 2 1 4 4 4 222222 1 4 55 55 1111111111111111111111111 5 666 0 0 0
lowQualScore : . . . ..... . . ... ........... . ................................ . . .......... . . ................................................. . . . ..... .... . . ............ . .. .......................... . . . . . ...... . . .. .. ......................... . ... . . .
lowQualScore : 3 2 3 55555 7 2 888 33333333333 4 55555555555555555555555555555555 3 6 4444444444 0 2 3333333333333333333333333333333333333333333333333 3 1 6 77777 7777 7 6 111111111111 0 88 00000000000000000000000000 6 6 0 8 0 888888 0 4 66 66 2222222222222222222222222 7 111 1 7 0
consensus : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTT---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAA--------------------A-T---AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGGAA-A-TGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
Reference ( family-2386 ) : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTT---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAA--------------------A-T---AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGGAA-A-TGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
gi|1 : GCTGCAGT-GGGCACCCGAAATG-TTG-TTCATT-GTTCGGGTGG-------GT-----------TCGTAT-----------T-C------CTT--AATTTT-CTGTATTTCAGGT----------CAGATCTGGGGTTTTTTTCTTCTTCAT--TTTT-------AGGAATCTGTGTAAA----------CAACATGGTATCGAAA-TCTAAC-TTTCGT----TTGGTT-TATTGTT-AAT-----------TTA-TGTCTTC-ATGTAC-----------------------------GGACAAAT-----ATACGC-CATAGTAT-C------AGTTTCA-CCAT-TGA-CAAAG------------CATTTGTATCAA-AAGCATGG-CATTGAA-T-TGAGTAGAAGTGGCAATGATGTTTCTCGT
gi|10 : ttaggTTTTT---------AT--TATT-------AG----------AAATCTGTTTAATCAACATGACTTCAGAT-TGTAAA-TTTTGC----TTGGTT-TATTGTC-AAT-----------TGA-TGTCATC-AAGGACAA---------------------------------ATTTAAAATTCGC-CACAGctaaaccagttcatgtccacaagtaattagattgtataaactaaatacaaa
gi|11 : AGCAT-CAA----GATG-------A-TGATCAAGA------------CACTTGTATT-GGAAACATGG-AAGGGAACA-TG--TAGAAGTAGCAATGATGTTTCTATTAT-
gi|12 : tgttaaAAC-AGGTACCCGAAATAACGG-GAAAC--A--CAAGTCATGTT---GTAACGATCATGCTCGGGT-----------C-C------ATT--T---TT-CCGGATTTTGGgatgtcaagt
gi|13 : agatgaaggacaaTCATT-ATGGATGAA--------------------A-T---GGACACCATTAGAATAAGC-CAACGCAC-CAATATGAATATCA-TCGA-TGA-AAAGA------------CATT
gi|14 : GGTT----------CGGGTTCAATGTTTGT---------GC--TATTTAGTGTTAG----------AAA----------CAAGATGGCACTGATA-TCTATA-TT-CAC----TTGATT-TATTGTT-Aaaagtattg
gi|15 : CTGCAAT-GCCTACCCGAAATAACCG-AAAACC-A--CGGGTCGTGCT---GT-----------CCGGGT-----------CGG------GTTCAG---TT-CCAGTATTCGG
gi|16 : ggaGCTGCAACCGGGTACCCGAAATTGCCA-AAAACT-A--TAGATCTTGTT---GT-----------TCGGGT---------------------TT------------GATTT-GGTT----------Cga
gi|17 : gggATATGGTGTCAAAA-TCTAAA-----GC----ATGGTTGTATT-TT-GA------------TGA-TGGTATC-ATGGCCAAA--------------------A-C---Aca
gi|18 : aagcGCTGTAAC-AGGTGCTCGAAATAACTG-AAAACCTG--CAGGCCATGTT---atga
gi|19 : gCTGAAAT-GGGTACCAGAAATAACTG-AAAACT-A--TGGGTCGTGTT---GT-----------TTGGTT-----------C-C------tgattctattca
gi|2 : GCTGCAAC-CGGTACACACAATAACCG-AAAAAC-G--CAGGTCATGTT---GT-----------TTGGGTTGGGTTCGGTTC-C------ATC--A---TT-CCGGATTTCGGTT----------CAGGTTTAGTGTTTGT---------AT--CATTTCAATT-AG----------AAA----------CATGATGGTGTCAGAA-TTTAAA-TTTCAC----TTGATT-TATTGTT-AGT-----------CGA-TGTCAAT-GTACACAAA--------------------A-T---CAAC-CA-TTAGAATAAGA-CACAGCAC-C------AATAT--------TGA-------------------------------AAGCATGG-AGGGGAA-A-GAAGCAAAAGTGGCAACTTTGTTTCTAGTATAGAT
gi|3 : gCAAT-GGGTACCTGAACTGTCTT-AAAACT-G--CAGGTCTTACT---AT-----------TCAATT-----------C-A------ATT--T---TTACCGGATTTCAGTTGGATTTCAATTCAGTCCAGTTTTAGTGATAGAATCAT--TATT-------AG----------AAATCTTTTTAAACAACATGGCATCAAAA-TTTTGA-----GC----GTGGTTATATT-TT-AATGCTTTGTCCAATGA-TGGCATC-ATGGACAAAGCAATGACAAGATGTAAAATA-TGTCAGACACCTTTAAGACACAC-TACAGTAT---A----AATATCA-TCAT-TGA-GGAAA------------CA------------AACATGG-ATTGGAA-AATGAGCAGAAGTAACAAgtaaagtttaaaccagagtccatatcagataatctgctaaattaatatattgtaaaaaatacaa
gi|4 : GCTGCAAT-GGGTACCCAAAATAACCA-AAAACT-G--CATGTTGTGTC---GT-----------TTGGGT-----------C-T------GTT--A---TT-CTGGATTTCGGTT----------CTGGTCCAATGTTTGT---------AT--TATT-------AG----------AAA----------CAGAATGGCATCATGT-TCTAAA-TTTAGC----TTGATT-TATTGTT-ATT-----------TGA-TGTCATT-GTGGACAAA--------------------A-T---AGACACAATCAGAATAAGT-CGCAGTGT-CAA----AATATCA-TCAG-TGA-CGAGC------------CACTTATATT-GAAAGCATGG-AATGGAA-A-TGGGTAGAA-TGGCAATAATGTTGCTAGCAT-GATt
gi|5 : aTGTAAC-AGGTGCTCGAAATAACTG-AAAACCCG--CAGGCCATGTTTGAGT------------CGGAT-----------T-CTATTCAATT--A---TT-CTGGATTT----------------TGGTATGGTGTTTGA---------AT--CATT-------AG----------ATA----------CAATATGACATCAAAAATCTAAA-TTTCAC----ACGATT-TATTGTT-TAT-----------AGA-TGTCACT-GCAGACAAA--------------------A-T---AGACACATTTGAAATAAGC-CACAACAT-C------AATATCA-TCAA-TGA-CAGGA------------CATATAa
gi|6 : CTTCAAC-AGGTACCCGAAATAACAGAAAAACC-C--CAGGTCATGTT---GC-----------T----T-----------T-T------GTT-----------GAAATT-GGTT----------CAAGTCTG-----------------AT--TAAT-------AT----------AAA----------CAATGTGGCATCAAAA-TATAAA-GGTGGCTTAATTAATT-TATTGTT-AAA-----------TGA-TGTCATT-GTGGACAAA--------------------A-C---AGATACATTTGAAATATGT-CAAAGGAT-Cc
gi|7 : GCTGCTAC-AGGTCCTCGAAATAACTG-AAAACC-G--CGGGTCAAGTT---GT-----------TTGGGT-----------C----------------------AGATCT-GATT----------CAGGTCCGGTGCTTGT---------ATAATATT-------AG----------AAA----------CAACATGGTGTCAAAA-TCTAAA-TTTTGC----TTGATT-TACTGTcatacc
gi|8 : gtgataattgaataggT-TATTGTTTACT-----------TGAATGTCGTCCATGGACAAA--------------------AAT---AGGCACACTTAAAATACTC-CACAGGATTCAG------TATCAATCAAATGA-CAAAA------------CATTTATATT-G-AAGC-TGGAAATGAAA-A-TGAGAAGAAGAGGCAACACTATTTCTAGTAT-gggacttatttgaaacgaagtaagcacaa
gi|9 : AAAA-TTTAAAACTTGGC----TTAATT-TATTGTT-AAA-----------TGA-TGTCATC-AAGAAAAAA--------------------A-CC--ATTCGCATTGAAAATACGCTCGAAG-AT-CCA----AAT--CA-TCAA-TAA-CAAAATATGTACATGTACATGTATATC-GTAAGCATGG-AACGGAA-A-CGAGTAGAAGTGGCATTGATGATTCTatccgtcaagtctaaacgttacattgtaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATTTCTAGTATAGATGTCAAGTCTAAACCAGAGTCCA
Alignments
lowQualScore : 11111111111 44444444444444444444444444444444 1 1111111111 4444444444444444444444444444444444444444444444444 222222222222 33333333333333333333333333 222222 3333333333333333333333333 1
lowQualScore : 3 2 3 99999 0 2 555 77777777777 0 99999999999999999999999999999999 2 1 9999999999 1 0 5555555555555555555555555555555555555555555555555 2 2 3 88888 7777 6 3 000000000000 4 33 88888888888888888888888888 2 1 4 4 4 222222 1 4 55 55 1111111111111111111111111 5 666 0 0 0
lowQualScore : . . . ..... . . ... ........... . ................................ . . .......... . . ................................................. . . . ..... .... . . ............ . .. .......................... . . . . . ...... . . .. .. ......................... . ... . . .
lowQualScore : 3 2 3 55555 7 2 888 33333333333 4 55555555555555555555555555555555 3 6 4444444444 0 2 3333333333333333333333333333333333333333333333333 3 1 6 77777 7777 7 6 111111111111 0 88 00000000000000000000000000 6 6 0 8 0 888888 0 4 66 66 2222222222222222222222222 7 111 1 7 0
consensus : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTT---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAA--------------------A-T---AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGGAA-A-TGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
Reference ( family-2386 ) : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTT---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAA--------------------A-T---AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGGAA-A-TGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
gi|1 : GCTGCAGT-GGGCACCCGAAATG-TTG-TTCATT-GTTCGGGTGG-------GT-----------TCGTAT-----------T-C------CTT--AATTTT-CTGTATTTCAGGT----------CAGATCTGGGGTTTTTTTCTTCTTCAT--TTTT-------AGGAATCTGTGTAAA----------CAACATGGTATCGAAA-TCTAAC-TTTCGT----TTGGTT-TATTGTT-AAT-----------TTA-TGTCTTC-ATGTAC-----------------------------GGACAAAT-----ATACGC-CATAGTAT-C------AGTTTCA-CCAT-TGA-CAAAG------------CATTTGTATCAA-AAGCATGG-CATTGAA-T-TGAGTAGAAGTGGCAATGATGTTTCTCGT
gi|10 : ttaggTTTTT---------AT--TATT-------AG----------AAATCTGTTTAATCAACATGACTTCAGAT-TGTAAA-TTTTGC----TTGGTT-TATTGTC-AAT-----------TGA-TGTCATC-AAGGACAA---------------------------------ATTTAAAATTCGC-CACAGctaaaccagttcatgtccacaagtaattagattgtataaactaaatacaaa
gi|11 : AGCAT-CAA----GATG-------A-TGATCAAGA------------CACTTGTATT-GGAAACATGG-AAGGGAACA-TG--TAGAAGTAGCAATGATGTTTCTATTAT-
gi|12 : tgttaaAAC-AGGTACCCGAAATAACGG-GAAAC--A--CAAGTCATGTT---GTAACGATCATGCTCGGGT-----------C-C------ATT--T---TT-CCGGATTTTGGgatgtcaagt
gi|13 : agatgaaggacaaTCATT-ATGGATGAA--------------------A-T---GGACACCATTAGAATAAGC-CAACGCAC-CAATATGAATATCA-TCGA-TGA-AAAGA------------CATT
gi|14 : GGTT----------CGGGTTCAATGTTTGT---------GC--TATTTAGTGTTAG----------AAA----------CAAGATGGCACTGATA-TCTATA-TT-CAC----TTGATT-TATTGTT-Aaaagtattg
gi|15 : CTGCAAT-GCCTACCCGAAATAACCG-AAAACC-A--CGGGTCGTGCT---GT-----------CCGGGT-----------CGG------GTTCAG---TT-CCAGTATTCGG
gi|16 : ggaGCTGCAACCGGGTACCCGAAATTGCCA-AAAACT-A--TAGATCTTGTT---GT-----------TCGGGT---------------------TT------------GATTT-GGTT----------Cga
gi|17 : gggATATGGTGTCAAAA-TCTAAA-----GC----ATGGTTGTATT-TT-GA------------TGA-TGGTATC-ATGGCCAAA--------------------A-C---Aca
gi|18 : aagcGCTGTAAC-AGGTGCTCGAAATAACTG-AAAACCTG--CAGGCCATGTT---atga
gi|19 : gCTGAAAT-GGGTACCAGAAATAACTG-AAAACT-A--TGGGTCGTGTT---GT-----------TTGGTT-----------C-C------tgattctattca
gi|2 : GCTGCAAC-CGGTACACACAATAACCG-AAAAAC-G--CAGGTCATGTT---GT-----------TTGGGTTGGGTTCGGTTC-C------ATC--A---TT-CCGGATTTCGGTT----------CAGGTTTAGTGTTTGT---------AT--CATTTCAATT-AG----------AAA----------CATGATGGTGTCAGAA-TTTAAA-TTTCAC----TTGATT-TATTGTT-AGT-----------CGA-TGTCAAT-GTACACAAA--------------------A-T---CAAC-CA-TTAGAATAAGA-CACAGCAC-C------AATAT--------TGA-------------------------------AAGCATGG-AGGGGAA-A-GAAGCAAAAGTGGCAACTTTGTTTCTAGTATAGAT
gi|3 : gCAAT-GGGTACCTGAACTGTCTT-AAAACT-G--CAGGTCTTACT---AT-----------TCAATT-----------C-A------ATT--T---TTACCGGATTTCAGTTGGATTTCAATTCAGTCCAGTTTTAGTGATAGAATCAT--TATT-------AG----------AAATCTTTTTAAACAACATGGCATCAAAA-TTTTGA-----GC----GTGGTTATATT-TT-AATGCTTTGTCCAATGA-TGGCATC-ATGGACAAAGCAATGACAAGATGTAAAATA-TGTCAGACACCTTTAAGACACAC-TACAGTAT---A----AATATCA-TCAT-TGA-GGAAA------------CA------------AACATGG-ATTGGAA-AATGAGCAGAAGTAACAAgtaaagtttaaaccagagtccatatcagataatctgctaaattaatatattgtaaaaaatacaa
gi|4 : GCTGCAAT-GGGTACCCAAAATAACCA-AAAACT-G--CATGTTGTGTC---GT-----------TTGGGT-----------C-T------GTT--A---TT-CTGGATTTCGGTT----------CTGGTCCAATGTTTGT---------AT--TATT-------AG----------AAA----------CAGAATGGCATCATGT-TCTAAA-TTTAGC----TTGATT-TATTGTT-ATT-----------TGA-TGTCATT-GTGGACAAA--------------------A-T---AGACACAATCAGAATAAGT-CGCAGTGT-CAA----AATATCA-TCAG-TGA-CGAGC------------CACTTATATT-GAAAGCATGG-AATGGAA-A-TGGGTAGAA-TGGCAATAATGTTGCTAGCAT-GATt
gi|5 : aTGTAAC-AGGTGCTCGAAATAACTG-AAAACCCG--CAGGCCATGTTTGAGT------------CGGAT-----------T-CTATTCAATT--A---TT-CTGGATTT----------------TGGTATGGTGTTTGA---------AT--CATT-------AG----------ATA----------CAATATGACATCAAAAATCTAAA-TTTCAC----ACGATT-TATTGTT-TAT-----------AGA-TGTCACT-GCAGACAAA--------------------A-T---AGACACATTTGAAATAAGC-CACAACAT-C------AATATCA-TCAA-TGA-CAGGA------------CATATAa
gi|6 : CTTCAAC-AGGTACCCGAAATAACAGAAAAACC-C--CAGGTCATGTT---GC-----------T----T-----------T-T------GTT-----------GAAATT-GGTT----------CAAGTCTG-----------------AT--TAAT-------AT----------AAA----------CAATGTGGCATCAAAA-TATAAA-GGTGGCTTAATTAATT-TATTGTT-AAA-----------TGA-TGTCATT-GTGGACAAA--------------------A-C---AGATACATTTGAAATATGT-CAAAGGAT-Cc
gi|7 : GCTGCTAC-AGGTCCTCGAAATAACTG-AAAACC-G--CGGGTCAAGTT---GT-----------TTGGGT-----------C----------------------AGATCT-GATT----------CAGGTCCGGTGCTTGT---------ATAATATT-------AG----------AAA----------CAACATGGTGTCAAAA-TCTAAA-TTTTGC----TTGATT-TACTGTcatacc
gi|8 : gtgataattgaataggT-TATTGTTTACT-----------TGAATGTCGTCCATGGACAAA--------------------AAT---AGGCACACTTAAAATACTC-CACAGGATTCAG------TATCAATCAAATGA-CAAAA------------CATTTATATT-G-AAGC-TGGAAATGAAA-A-TGAGAAGAAGAGGCAACACTATTTCTAGTAT-gggacttatttgaaacgaagtaagcacaa
gi|9 : AAAA-TTTAAAACTTGGC----TTAATT-TATTGTT-AAA-----------TGA-TGTCATC-AAGAAAAAA--------------------A-CC--ATTCGCATTGAAAATACGCTCGAAG-AT-CCA----AAT--CA-TCAA-TAA-CAAAATATGTACATGTACATGTATATC-GTAAGCATGG-AACGGAA-A-CGAGTAGAAGTGGCATTGATGATTCTatccgtcaagtctaaacgttacattgtaca
blockSeqs : C G A CTG A TGA AACGATCATGC TGGGTTCGGTTCCATCATT C T GGATTTCAAT G GATAGAATCATTATTAGAAATCTTTTTAAA C T A ACTTG TTAA G T TGCTTTGTCCAA A CA GCAATGACAAGATGTAAAATATGTC T C T C T AATATG G A AA TC TATGTACATGTACATGTATATCGT A CA A
blockSeqs : . C . CCG G . . TCTATTCAATTATT C C . A ATTATTAGAAATCTGTTTAAT G A . TTTT . A . T . A AAT A A . C . AA A . A A CACTTGTATTGG . AA .
blockSeqs : . C . CA T . . CGGGTTCAGTT C C . C GCTATTTAGTGTTAGAAA T G . TTTC . . . T . A ACC T A . C . AA A . A G CACTTATATTGA . A .
blockSeqs : . T . TA A . . CAATTTTTA C C . T ATCATTTCAATTAGAAA G G . TTTA . . . T . A AT A C . T . AG A . T C CATTTATATTG . A
blockSeqs : . T . TA G . . CCATTTTT T C . T ATAATATTAGAAA C A . TTTC . . . T . G AC T A . T . CA A . G C CA . A
blockSeqs : . C . CG A . . CTGTTATT T . . A ATTATTAGAAA A A . GGTG . . . A . A AT T A . C . A A . A C . . A
blockSeqs : . T . TG T . . TTGTT . . . A ATCATTAGATA T A . TTTT . . . T . G AT C T . G . . A . A C
blockSeqs : . C . TG G . . TT . . . ATTAATATAAA T A . TTC . . . A . G AT T C . G . . . . . .
blockSeqs : . T . CC A . . C . . C G . . . . . . . G AC . C . . .
blockSeqs : . A . CG A . . . . . . . A .
blockSeqs : . T . A A . .
blockSeqCons : CG*** CGTTNTT************************* ATTATTAGAAA************************************** AT************************ AA****
originalCons : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACC-G--CGGGTCGTGTT---GT-----------TCGGGT-----------C-C------GTT--A---TT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAA--------------------A-T---AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGGAA-A-TGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
finalCons : NGCTGCAAC-GGGTACCCGAAATAACCG-AAAACCG---CGGGTCGTGTT---GT-----------TCGGGTCGTTNTT-------------------------CCGGATTTCGGTT----------CNGGTCCGGTGTTTGTATTATTAGAAA--------------------------------------CAACATGGCGTCAAAA-TCTAAA-TTTCGC----TTGATT-TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAAAT------------------------AGACACATTTAAAATACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGGAA-A-TGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATTTCTAGTATAGATGTCAAGTCTAAACCAGAGTCCA
Alignments
lowQualScore : 11111111111 7777777777777777777777777777777777777777 1 1111111111 4444444444444444444444444444444444444444444444444 1111 222222222222 111111 33333333333333333333 222222 3333333333333333333333333 1
lowQualScore : 3 2 3 6 2 2 44 555 77777777777 7777777777777777777777777777777777777777 666 1 9999999999 1 0 5555555555555555555555555555555555555555555555555 2 2 3 88888 3333 3 000000000000 4 33 111111 4 2 22222222222222222222 1 4 4 4 222222 1 4 55 55 3333333333333333333333333 5 5 5 0 0 0
lowQualScore : . . . . . . .. ... ........... ........................................ ... . .......... . . ................................................. . . . ..... .... . ............ . .. ...... . . .................... . . . . ...... . . .. .. ......................... . . . . . .
lowQualScore : 3 9 3 7 8 2 66 888 33333333333 4444444444444444444444444444444444444444 333 6 4444444444 0 2 3333333333333333333333333333333333333333333333333 3 1 6 77777 8888 6 111111111111 0 88 222222 0 6 55555555555555555555 6 0 8 0 888888 0 4 66 66 8888888888888888888888888 7 7 7 1 7 0
consensus : NGCTGCAAC-GGGTACCCGAAATAACCGAAAA-CC-GCGGGTCGT--GTT---GT-----------TCGGGT-----C-------G------------T---------T--NTT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGCTTGATT----TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAAA-C-A--GAC-ACATTTAAAAT--------------------ACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGG-AA-ATGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
Reference ( family-2386 ) : NGCTGCAAC-GGGTACCCGAAATAACCGAAAA-CC-GCGGGTCGT--GTT---GT-----------TCGGGT-----C-------G------------T---------T--NTT-CCGGATTTCGGTT----------CNGGTCCGGTGTTTGT---------AT--TATT-------AG----------AAA----------CAACATGGCGTCAAAA-TCTAAA-TTTCGCTTGATT----TATTGTT-AAT-----------TGA-TGTCATC-GTGGACAAAA-T-A--GAC-ACATTTAAAAT--------------------ACGC-CACAGCAT-CAA----AATATCA-TCAA-TGA-CAAGA------------CATTTATATC-G-AAGCATGG-AATGG-AA-ATGAGTAGAAGTGGCAACGATGTTTCTAGTAT-GAT
gi|1 : GCTGCAGT-GGGCACCCGAAAT-----------------GTTGTTCATT---GT-----------TCGGGTGGGTTC-------G------------TATTCCTTAAT--TTT-CTGTATTTCAGGT----------CAGATCTGGGGTTTTTTTCTTCTTCAT--TTTT-------AGGAATCTGTGTAAA----------CAACATGGTATCGAAA-TCTAAC-TTTCGTTTGGTT----TATTGTT-AAT-----------TTA-TGTCTTC-ATGTAC-------G--GAC-AAAT-----AT--------------------ACGC-CATAGTAT-C------AGTTTCA-CCAT-TGA-CAAAG------------CATTTGTATCAA-AAGCATGG-CATTG-AA-TTGAGTAGAAGTGGCAATGATGTTTCTCGT
gi|10 : ttaggTTTTT---------AT--TATT-------AG----------AAATCTGTTTAATCAACATGACTTCAGAT-TGTAAA-TTTTGCTTGGTT----TATTGTC-AAT-----------TGA-TGTCATC-AAGGACAA--------------ATTTAAAAT--------------------TCGC-CACAGctaaaccagttcatgtccacaagtaattagattgtataaactaaatacaaa
gi|11 : AGCAT-CAA----GATG-------A-TGATCAAGA------------CACTTGTATT-GGAAACATGG-AAGGG-AACATG--TAGAAGTAGCAATGATGTTTCTATTAT-
gi|12 : tgttaaAAC-AGGTACCCGAAATAACGGGAAA--C-ACAAGTCAT--GTT---GTAACGATCATGCTCGGGTC----C-------A------------T---------T--TTT-CCGGATTTTGGgatgtcaagt
gi|13 : agatgaaggacaaTCATT-ATGGATGAAA-T-G--GAC-ACCATTAGAAT--------------------AAGC-CAACGCAC-CAATATGAATATCA-TCGA-TGA-AAAGA------------CATT
gi|14 : GGTT----------CGGGTTCAATGTTTGT---------GC--TATTTAGTGTTAG----------AAA----------CAAGATGGCACTGATA-TCTATA-TT-CACTTGATT----TATTGTT-Aaaagtattg
gi|15 : CTGCAAT-GCCTACCCGAAATAACCGAAAA-CC-ACGGGTCGT--GCT---GT-----------CCGGGT-----CGG-----G------------T---------TCAGTT-CCAGTATTCGG
gi|16 : ggaGCTGCAACCGGGTACCCGAAATTGCCAAAAA-CT-ATAGATCTT--GTT---GT-----------TCGGGT--------------------------T---------T---------GATTT-GGTT----------Cga
gi|17 : gggATATGGTGTCAAAA-TCTAAA-----GCATGGTTG---TATT-TT-GA------------TGA-TGGTATC-ATGGCCAAAA-C-A--ca
gi|18 : aagcGCTGTAAC-AGGTGCTCGAAATAACTGAAAA-CCTGCAGGCCAT--GTT---atga
gi|19 : gCTGAAAT-GGGTACCAGAAATAACTGAAAA-CT-ATGGGTCGT--GTT---GT-----------TTGGTT-----C-------tgattctattca
gi|2 : GCTGCAAC-CGGTACACACAATAACCGAAAA-AC-GCAGGTCAT--GTT---GT-----------TTGGGT-----T-------GGGTTCGGTTCCAT---------C--ATT-CCGGATTTCGGTT----------CAGGTTTAGTGTTTGT---------AT--CATTTCAATT-AG----------AAA----------CATGATGGTGTCAGAA-TTTAAA-TTTCACTTGATT----TATTGTT-AGT-----------CGA-TGTCAAT-GTACACAAAA-T-C--AAC--CA-TTAGAAT--------------------AAGA-CACAGCAC-C------AATAT--------TGA-------------------------------AAGCATGG-AGGGG-AA-AGAAGCAAAAGTGGCAACTTTGTTTCTAGTATAGATc
gi|3 : gCAAT-GGGTACCTGAACTGTCTTAAAA-CT-GCAGGTCTT--ACT---AT-----------TCAATT-----C-------AA-----------T---------T--TTTACCGGATTTCAGTTGGATTTCAATTCAGTCCAGTTTTAGTGATAGAATCAT--TATT-------AG----------AAATCTTTTTAAACAACATGGCATCAAAA-TTTTGA-----GCGTGGTTA---TATT-TT-AATGCTTTGTCCAATGA-TGGCATC-ATGGACAAAG-C-AATGACAAGATGTAAAATATGTCAGACACCTTTAAGACACAC-TACAGTAT---A----AATATCA-TCAT-TGA-GGAAA------------C------------AAACATGG-ATTGGAAA-ATGAGCAGAAGTAACAAgtaaagtttaaaccagagtccatatcagataatctgctaaattaatatattgtaaaaaatacaa
gi|4 : GCTGCAAT-GGGTACCCAAAATAACCAAAAA-CT-GCATGTTGT--GTC---GT-----------TTGGGT-----CT------G------------T---------T--ATT-CTGGATTTCGGTT----------CTGGTCCAATGTTTGT---------AT--TATT-------AG----------AAA----------CAGAATGGCATCATGT-TCTAAA-TTTAGCTTGATT----TATTGTT-ATT-----------TGA-TGTCATT-GTGGACAAAA-T-A--GAC-ACAATCAGAAT--------------------AAGT-CGCAGTGT-CAA----AATATCA-TCAG-TGA-CGAGC------------CACTTATATT-GAAAGCATGG-AATGG-AA-ATGGGTAGAA-TGGCAATAATGTTGCTAGCAT-GATt
gi|5 : aTGTAAC-AGGTGCTCGAAATAACTGAAAA-CCCGCAGGCCAT--GTTTGAGT------------CGGAT-----TCTATTCAA------------T---------T--ATT-CTGGATTT----------------TGGTATGGTGTTTGA---------AT--CATT-------AG----------ATA----------CAATATGACATCAAAAATCTAAA-TTTCACACGATT----TATTGTT-TAT-----------AGA-TGTCACT-GCAGACAAAA-T-A--GAC-ACATTTGAAAT--------------------AAGC-CACAACAT-C------AATATCA-TCAA-TGA-CAGGA------------CATATAa
gi|6 : CTTCAAC-AGGTACCCGAAATAACAGAAAAACC-CCAGGTCAT--GTT---GC-----------TT------------------------------T---------T--GTT---GAAATT-GGTT----------CAAGTCTG-----------------AT--TAAT-------AT----------AAA----------CAATGTGGCATCAAAA-TATAAA-GGTGGCTTAATTAATTTATTGTT-AAA-----------TGA-TGTCATT-GTGGACAAAA-C-A--GAT-ACATTTGAAAT--------------------ATGT-CAAAGGAT-Cc
gi|7 : GCTGCTAC-AGGTCCTCGAAATAACTGAAAA-CC-GCGGGTCAA--GTT---GT-----------TTGGGT-----C-------A--------------------------------GATCT-GATT----------CAGGTCCGGTGCTTGT---------ATAATATT-------AG----------AAA----------CAACATGGTGTCAAAA-TCTAAA-TTTTGCTTGATT----TACTGTcatacc
gi|8 : gtgataattgaataggT----TATTGTTTACT-----------TGAATGTCGTCCATGGACAAAAAT-A--GGC-ACACTTAAAAT--------------------ACTC-CACAGGATTCAG------TATCAATCAAATGA-CAAAA------------CATTTATATT-G-AAGC-TGGAAATGA-AA-ATGAGAAGAAGAGGCAACACTATTTCTAGTAT-gggacttatttgaaacgaagtaagcacaa
gi|9 : AAAA-TTTAAAACTTGGCTTAATT----TATTGTT-AAA-----------TGA-TGTCATC-AAGAAAAAAA-CCA--TTC-GCATTGAAAAT--------------------ACGCTCGAAG-AT-CCA----AAT--CA-TCAA-TAA-CAAAATATGTACATGTACATGTATATC-GTAAGCATGG-AACGG-AA-ACGAGTAGAAGTGGCATTGATGATTCTatccgtcaagtctaaacgttacattgtaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TATTTCTAGTATAGATGTCAAGTCTAAACCAGAGTCCA